Multiple sequence alignment - TraesCS3A01G032300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G032300 chr3A 100.000 5180 0 0 1 5180 17698339 17703518 0.000000e+00 9566
1 TraesCS3A01G032300 chr3A 87.669 1257 125 11 3097 4342 16598973 16600210 0.000000e+00 1435
2 TraesCS3A01G032300 chr3A 88.574 1024 101 12 879 1898 16596934 16597945 0.000000e+00 1229
3 TraesCS3A01G032300 chr3A 89.474 931 92 6 2043 2971 16598052 16598978 0.000000e+00 1171
4 TraesCS3A01G032300 chr3D 96.780 4596 69 22 324 4881 10639365 10634811 0.000000e+00 7594
5 TraesCS3A01G032300 chr3D 85.931 2765 296 57 591 3333 10520471 10517778 0.000000e+00 2865
6 TraesCS3A01G032300 chr3D 82.480 976 113 34 3402 4346 10517775 10516827 0.000000e+00 802
7 TraesCS3A01G032300 chr3D 84.731 465 67 4 3563 4024 10299164 10299627 3.650000e-126 462
8 TraesCS3A01G032300 chr3D 96.330 109 3 1 5073 5180 423008933 423008825 1.480000e-40 178
9 TraesCS3A01G032300 chr3D 95.413 109 5 0 5072 5180 588106724 588106616 1.920000e-39 174
10 TraesCS3A01G032300 chr3D 95.413 109 5 0 5072 5180 600417835 600417727 1.920000e-39 174
11 TraesCS3A01G032300 chr3D 85.161 155 21 2 4804 4956 10495164 10495010 1.930000e-34 158
12 TraesCS3A01G032300 chr3B 95.882 2137 72 12 759 2883 14704091 14701959 0.000000e+00 3445
13 TraesCS3A01G032300 chr3B 88.200 1322 121 16 2013 3333 14464152 14465439 0.000000e+00 1544
14 TraesCS3A01G032300 chr3B 89.844 1024 85 9 2314 3333 14997705 14996697 0.000000e+00 1297
15 TraesCS3A01G032300 chr3B 87.395 1071 119 11 795 1862 14463009 14464066 0.000000e+00 1216
16 TraesCS3A01G032300 chr3B 91.678 757 63 0 2256 3012 14694358 14693602 0.000000e+00 1050
17 TraesCS3A01G032300 chr3B 88.369 748 74 13 799 1542 14695989 14695251 0.000000e+00 887
18 TraesCS3A01G032300 chr3B 81.734 969 130 24 3402 4346 14996694 14995749 0.000000e+00 765
19 TraesCS3A01G032300 chr3B 80.674 771 109 21 3592 4346 14465672 14466418 3.500000e-156 562
20 TraesCS3A01G032300 chr3B 82.306 633 83 21 1538 2163 14694991 14694381 5.940000e-144 521
21 TraesCS3A01G032300 chr3B 80.197 712 93 11 3640 4337 14977334 14976657 1.680000e-134 490
22 TraesCS3A01G032300 chr3B 80.056 712 94 13 3640 4337 26657590 26658267 7.800000e-133 484
23 TraesCS3A01G032300 chr3B 83.028 436 33 13 309 727 14706120 14705709 1.770000e-94 357
24 TraesCS3A01G032300 chr3B 84.685 222 26 5 4742 4956 26663390 26663610 1.130000e-51 215
25 TraesCS3A01G032300 chr3B 84.513 226 22 8 4742 4956 14407978 14408201 1.460000e-50 211
26 TraesCS3A01G032300 chr3B 80.357 224 34 9 4739 4956 26658528 26658747 1.490000e-35 161
27 TraesCS3A01G032300 chr6B 78.071 1400 271 22 2301 3679 40441841 40443225 0.000000e+00 852
28 TraesCS3A01G032300 chr6B 95.652 115 5 0 4958 5072 548818929 548818815 8.860000e-43 185
29 TraesCS3A01G032300 chr4B 95.652 115 5 0 4958 5072 58745595 58745709 8.860000e-43 185
30 TraesCS3A01G032300 chr2B 95.652 115 5 0 4958 5072 453024143 453024029 8.860000e-43 185
31 TraesCS3A01G032300 chr2B 94.828 116 6 0 4957 5072 453026711 453026596 1.150000e-41 182
32 TraesCS3A01G032300 chr1B 95.652 115 5 0 4958 5072 15151709 15151823 8.860000e-43 185
33 TraesCS3A01G032300 chr1B 94.828 116 6 0 4958 5073 47620966 47620851 1.150000e-41 182
34 TraesCS3A01G032300 chr6D 94.783 115 6 0 4958 5072 132052748 132052862 4.120000e-41 180
35 TraesCS3A01G032300 chr7D 94.783 115 5 1 5067 5180 125081343 125081229 1.480000e-40 178
36 TraesCS3A01G032300 chr7A 96.296 108 4 0 5073 5180 695971248 695971141 1.480000e-40 178
37 TraesCS3A01G032300 chr5D 93.333 120 8 0 4953 5072 164648007 164648126 1.480000e-40 178
38 TraesCS3A01G032300 chr5D 94.643 112 6 0 5069 5180 69320956 69320845 1.920000e-39 174
39 TraesCS3A01G032300 chr2D 96.296 108 4 0 5073 5180 8892816 8892709 1.480000e-40 178
40 TraesCS3A01G032300 chr2D 93.966 116 7 0 4957 5072 156555558 156555443 5.330000e-40 176
41 TraesCS3A01G032300 chr2D 71.624 511 124 18 2304 2805 639689985 639689487 2.530000e-23 121
42 TraesCS3A01G032300 chr2A 96.296 108 4 0 5073 5180 270110469 270110576 1.480000e-40 178
43 TraesCS3A01G032300 chr6A 95.455 110 4 1 5072 5180 60222087 60221978 1.920000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G032300 chr3A 17698339 17703518 5179 False 9566.000000 9566 100.000000 1 5180 1 chr3A.!!$F1 5179
1 TraesCS3A01G032300 chr3A 16596934 16600210 3276 False 1278.333333 1435 88.572333 879 4342 3 chr3A.!!$F2 3463
2 TraesCS3A01G032300 chr3D 10634811 10639365 4554 True 7594.000000 7594 96.780000 324 4881 1 chr3D.!!$R2 4557
3 TraesCS3A01G032300 chr3D 10516827 10520471 3644 True 1833.500000 2865 84.205500 591 4346 2 chr3D.!!$R6 3755
4 TraesCS3A01G032300 chr3B 14701959 14706120 4161 True 1901.000000 3445 89.455000 309 2883 2 chr3B.!!$R3 2574
5 TraesCS3A01G032300 chr3B 14463009 14466418 3409 False 1107.333333 1544 85.423000 795 4346 3 chr3B.!!$F3 3551
6 TraesCS3A01G032300 chr3B 14995749 14997705 1956 True 1031.000000 1297 85.789000 2314 4346 2 chr3B.!!$R4 2032
7 TraesCS3A01G032300 chr3B 14693602 14695989 2387 True 819.333333 1050 87.451000 799 3012 3 chr3B.!!$R2 2213
8 TraesCS3A01G032300 chr3B 14976657 14977334 677 True 490.000000 490 80.197000 3640 4337 1 chr3B.!!$R1 697
9 TraesCS3A01G032300 chr3B 26657590 26658747 1157 False 322.500000 484 80.206500 3640 4956 2 chr3B.!!$F4 1316
10 TraesCS3A01G032300 chr6B 40441841 40443225 1384 False 852.000000 852 78.071000 2301 3679 1 chr6B.!!$F1 1378

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.033405 CCCCTCTTCTACTCCGACCA 60.033 60.0 0.00 0.0 0.00 4.02 F
298 299 0.033503 TCCTAGGTGCCGTGATCTGA 60.034 55.0 9.08 0.0 0.00 3.27 F
357 358 0.179936 GTGCTGGCCTTCAGAGCTAT 59.820 55.0 12.74 0.0 46.18 2.97 F
359 360 0.250252 GCTGGCCTTCAGAGCTATCC 60.250 60.0 3.32 0.0 46.18 2.59 F
834 2459 0.804364 TTCAACATGGCAGATGCGAC 59.196 50.0 0.00 0.0 43.26 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 3801 2.878406 GCTTGCGTATCATGGGTTACAT 59.122 45.455 0.0 0.0 41.57 2.29 R
2066 3962 6.537453 TTCTGGAAACCAAGTTCATTTGAA 57.463 33.333 0.0 0.0 30.80 2.69 R
2320 4225 6.029346 AGTTTCATCCCAAATGTCATCAAC 57.971 37.500 0.0 0.0 0.00 3.18 R
3815 5850 6.538021 CACCTCAAATCTAAGATCAAGGTCTG 59.462 42.308 0.0 0.0 33.71 3.51 R
4271 6320 2.125512 CTGGCCGAACTTCCTCCG 60.126 66.667 0.0 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.839836 GCCCCATAGCCCCTCTTC 59.160 66.667 0.00 0.00 0.00 2.87
21 22 1.772156 GCCCCATAGCCCCTCTTCT 60.772 63.158 0.00 0.00 0.00 2.85
22 23 0.473886 GCCCCATAGCCCCTCTTCTA 60.474 60.000 0.00 0.00 0.00 2.10
23 24 1.353091 CCCCATAGCCCCTCTTCTAC 58.647 60.000 0.00 0.00 0.00 2.59
24 25 1.132689 CCCCATAGCCCCTCTTCTACT 60.133 57.143 0.00 0.00 0.00 2.57
25 26 2.252714 CCCATAGCCCCTCTTCTACTC 58.747 57.143 0.00 0.00 0.00 2.59
26 27 2.252714 CCATAGCCCCTCTTCTACTCC 58.747 57.143 0.00 0.00 0.00 3.85
27 28 1.889829 CATAGCCCCTCTTCTACTCCG 59.110 57.143 0.00 0.00 0.00 4.63
28 29 1.219773 TAGCCCCTCTTCTACTCCGA 58.780 55.000 0.00 0.00 0.00 4.55
29 30 0.396001 AGCCCCTCTTCTACTCCGAC 60.396 60.000 0.00 0.00 0.00 4.79
30 31 1.393487 GCCCCTCTTCTACTCCGACC 61.393 65.000 0.00 0.00 0.00 4.79
31 32 0.033405 CCCCTCTTCTACTCCGACCA 60.033 60.000 0.00 0.00 0.00 4.02
32 33 1.411787 CCCCTCTTCTACTCCGACCAT 60.412 57.143 0.00 0.00 0.00 3.55
33 34 1.683917 CCCTCTTCTACTCCGACCATG 59.316 57.143 0.00 0.00 0.00 3.66
34 35 2.379972 CCTCTTCTACTCCGACCATGT 58.620 52.381 0.00 0.00 0.00 3.21
35 36 2.359531 CCTCTTCTACTCCGACCATGTC 59.640 54.545 0.00 0.00 0.00 3.06
44 45 4.057224 GACCATGTCGTTGTGCCA 57.943 55.556 0.00 0.00 0.00 4.92
45 46 1.574428 GACCATGTCGTTGTGCCAC 59.426 57.895 0.00 0.00 0.00 5.01
46 47 1.153066 ACCATGTCGTTGTGCCACA 60.153 52.632 0.00 0.00 0.00 4.17
47 48 0.749818 ACCATGTCGTTGTGCCACAA 60.750 50.000 6.08 6.08 35.42 3.33
54 55 3.522731 TTGTGCCACAACACCGCC 61.523 61.111 6.08 0.00 39.93 6.13
55 56 4.497984 TGTGCCACAACACCGCCT 62.498 61.111 0.00 0.00 39.93 5.52
56 57 2.281208 GTGCCACAACACCGCCTA 60.281 61.111 0.00 0.00 34.35 3.93
57 58 1.674322 GTGCCACAACACCGCCTAT 60.674 57.895 0.00 0.00 34.35 2.57
58 59 0.391927 GTGCCACAACACCGCCTATA 60.392 55.000 0.00 0.00 34.35 1.31
59 60 0.107897 TGCCACAACACCGCCTATAG 60.108 55.000 0.00 0.00 0.00 1.31
60 61 0.814010 GCCACAACACCGCCTATAGG 60.814 60.000 15.01 15.01 38.53 2.57
76 77 4.785453 GGCTGGACCTCCTTGCCG 62.785 72.222 11.39 0.00 42.67 5.69
77 78 3.706373 GCTGGACCTCCTTGCCGA 61.706 66.667 0.00 0.00 36.82 5.54
78 79 2.581354 CTGGACCTCCTTGCCGAG 59.419 66.667 0.00 0.00 36.82 4.63
92 93 3.877357 CGAGGAGAGCGCGCTGTA 61.877 66.667 41.82 0.00 0.00 2.74
93 94 2.278271 GAGGAGAGCGCGCTGTAC 60.278 66.667 41.82 36.40 0.00 2.90
94 95 3.052620 GAGGAGAGCGCGCTGTACA 62.053 63.158 37.96 0.00 0.00 2.90
95 96 2.580867 GGAGAGCGCGCTGTACAG 60.581 66.667 41.82 18.93 0.00 2.74
96 97 2.580867 GAGAGCGCGCTGTACAGG 60.581 66.667 41.82 14.74 0.00 4.00
97 98 4.803426 AGAGCGCGCTGTACAGGC 62.803 66.667 41.82 22.36 0.00 4.85
104 105 3.204827 GCTGTACAGGCGGCATGG 61.205 66.667 23.95 2.33 40.31 3.66
105 106 2.268920 CTGTACAGGCGGCATGGT 59.731 61.111 19.53 9.01 0.00 3.55
106 107 1.815421 CTGTACAGGCGGCATGGTC 60.815 63.158 19.53 11.35 0.00 4.02
107 108 2.513897 GTACAGGCGGCATGGTCC 60.514 66.667 19.53 2.26 0.00 4.46
115 116 2.819550 GGCATGGTCCGACGGTAT 59.180 61.111 14.79 4.56 0.00 2.73
116 117 2.043625 GGCATGGTCCGACGGTATA 58.956 57.895 14.79 1.35 0.00 1.47
117 118 0.606604 GGCATGGTCCGACGGTATAT 59.393 55.000 14.79 3.83 0.00 0.86
118 119 1.671850 GGCATGGTCCGACGGTATATG 60.672 57.143 14.79 16.12 0.00 1.78
119 120 1.271379 GCATGGTCCGACGGTATATGA 59.729 52.381 22.01 0.00 0.00 2.15
120 121 2.288579 GCATGGTCCGACGGTATATGAA 60.289 50.000 22.01 0.00 0.00 2.57
121 122 3.314553 CATGGTCCGACGGTATATGAAC 58.685 50.000 14.79 2.18 0.00 3.18
122 123 2.658285 TGGTCCGACGGTATATGAACT 58.342 47.619 14.79 0.00 0.00 3.01
123 124 2.359848 TGGTCCGACGGTATATGAACTG 59.640 50.000 14.79 0.00 0.00 3.16
124 125 2.620115 GGTCCGACGGTATATGAACTGA 59.380 50.000 14.79 0.00 0.00 3.41
125 126 3.549625 GGTCCGACGGTATATGAACTGAC 60.550 52.174 14.79 0.00 0.00 3.51
126 127 3.314635 GTCCGACGGTATATGAACTGACT 59.685 47.826 14.79 0.00 0.00 3.41
127 128 4.512944 GTCCGACGGTATATGAACTGACTA 59.487 45.833 14.79 0.00 0.00 2.59
128 129 5.180868 GTCCGACGGTATATGAACTGACTAT 59.819 44.000 14.79 0.00 0.00 2.12
129 130 5.766670 TCCGACGGTATATGAACTGACTATT 59.233 40.000 14.79 0.00 0.00 1.73
130 131 6.263842 TCCGACGGTATATGAACTGACTATTT 59.736 38.462 14.79 0.00 0.00 1.40
131 132 6.921857 CCGACGGTATATGAACTGACTATTTT 59.078 38.462 5.48 0.00 0.00 1.82
132 133 7.437267 CCGACGGTATATGAACTGACTATTTTT 59.563 37.037 5.48 0.00 0.00 1.94
133 134 9.454585 CGACGGTATATGAACTGACTATTTTTA 57.545 33.333 0.00 0.00 0.00 1.52
156 157 6.907206 AACATTGTTTGAGTGTTGATTTGG 57.093 33.333 0.00 0.00 34.98 3.28
157 158 5.976458 ACATTGTTTGAGTGTTGATTTGGT 58.024 33.333 0.00 0.00 0.00 3.67
158 159 6.042143 ACATTGTTTGAGTGTTGATTTGGTC 58.958 36.000 0.00 0.00 0.00 4.02
159 160 5.913137 TTGTTTGAGTGTTGATTTGGTCT 57.087 34.783 0.00 0.00 0.00 3.85
160 161 5.913137 TGTTTGAGTGTTGATTTGGTCTT 57.087 34.783 0.00 0.00 0.00 3.01
161 162 7.397892 TTGTTTGAGTGTTGATTTGGTCTTA 57.602 32.000 0.00 0.00 0.00 2.10
162 163 7.026631 TGTTTGAGTGTTGATTTGGTCTTAG 57.973 36.000 0.00 0.00 0.00 2.18
163 164 6.601613 TGTTTGAGTGTTGATTTGGTCTTAGT 59.398 34.615 0.00 0.00 0.00 2.24
164 165 6.861065 TTGAGTGTTGATTTGGTCTTAGTC 57.139 37.500 0.00 0.00 0.00 2.59
165 166 4.988540 TGAGTGTTGATTTGGTCTTAGTCG 59.011 41.667 0.00 0.00 0.00 4.18
166 167 4.315803 AGTGTTGATTTGGTCTTAGTCGG 58.684 43.478 0.00 0.00 0.00 4.79
167 168 4.062991 GTGTTGATTTGGTCTTAGTCGGT 58.937 43.478 0.00 0.00 0.00 4.69
168 169 4.062293 TGTTGATTTGGTCTTAGTCGGTG 58.938 43.478 0.00 0.00 0.00 4.94
169 170 4.062991 GTTGATTTGGTCTTAGTCGGTGT 58.937 43.478 0.00 0.00 0.00 4.16
170 171 4.345859 TGATTTGGTCTTAGTCGGTGTT 57.654 40.909 0.00 0.00 0.00 3.32
171 172 4.710324 TGATTTGGTCTTAGTCGGTGTTT 58.290 39.130 0.00 0.00 0.00 2.83
172 173 4.513692 TGATTTGGTCTTAGTCGGTGTTTG 59.486 41.667 0.00 0.00 0.00 2.93
173 174 3.823281 TTGGTCTTAGTCGGTGTTTGA 57.177 42.857 0.00 0.00 0.00 2.69
174 175 3.823281 TGGTCTTAGTCGGTGTTTGAA 57.177 42.857 0.00 0.00 0.00 2.69
175 176 4.345859 TGGTCTTAGTCGGTGTTTGAAT 57.654 40.909 0.00 0.00 0.00 2.57
176 177 4.062293 TGGTCTTAGTCGGTGTTTGAATG 58.938 43.478 0.00 0.00 0.00 2.67
177 178 3.120304 GGTCTTAGTCGGTGTTTGAATGC 60.120 47.826 0.00 0.00 0.00 3.56
178 179 3.071479 TCTTAGTCGGTGTTTGAATGCC 58.929 45.455 0.00 0.00 0.00 4.40
179 180 2.851263 TAGTCGGTGTTTGAATGCCT 57.149 45.000 0.00 0.00 0.00 4.75
180 181 1.523758 AGTCGGTGTTTGAATGCCTC 58.476 50.000 0.00 0.00 0.00 4.70
181 182 1.202758 AGTCGGTGTTTGAATGCCTCA 60.203 47.619 0.00 0.00 0.00 3.86
182 183 1.606668 GTCGGTGTTTGAATGCCTCAA 59.393 47.619 0.00 0.00 42.48 3.02
242 243 7.969387 TTTGAGAAAAACAAAGTCGATCTTG 57.031 32.000 7.64 7.64 36.40 3.02
243 244 5.510671 TGAGAAAAACAAAGTCGATCTTGC 58.489 37.500 8.82 0.00 36.40 4.01
244 245 5.296780 TGAGAAAAACAAAGTCGATCTTGCT 59.703 36.000 8.82 0.00 36.40 3.91
245 246 6.481976 TGAGAAAAACAAAGTCGATCTTGCTA 59.518 34.615 8.82 0.00 36.40 3.49
246 247 6.659776 AGAAAAACAAAGTCGATCTTGCTAC 58.340 36.000 8.82 0.00 36.40 3.58
247 248 4.647291 AAACAAAGTCGATCTTGCTACG 57.353 40.909 8.82 0.00 36.40 3.51
248 249 3.570926 ACAAAGTCGATCTTGCTACGA 57.429 42.857 8.82 0.00 36.40 3.43
253 254 2.561733 TCGATCTTGCTACGACAAGG 57.438 50.000 14.41 3.29 45.77 3.61
254 255 2.089201 TCGATCTTGCTACGACAAGGA 58.911 47.619 14.41 5.05 45.77 3.36
255 256 2.490509 TCGATCTTGCTACGACAAGGAA 59.509 45.455 14.41 4.89 45.77 3.36
256 257 2.599082 CGATCTTGCTACGACAAGGAAC 59.401 50.000 14.41 7.87 45.77 3.62
257 258 2.450609 TCTTGCTACGACAAGGAACC 57.549 50.000 14.41 0.00 45.77 3.62
258 259 1.001633 TCTTGCTACGACAAGGAACCC 59.998 52.381 14.41 0.00 45.77 4.11
259 260 0.759959 TTGCTACGACAAGGAACCCA 59.240 50.000 0.00 0.00 0.00 4.51
260 261 0.759959 TGCTACGACAAGGAACCCAA 59.240 50.000 0.00 0.00 0.00 4.12
261 262 1.154197 GCTACGACAAGGAACCCAAC 58.846 55.000 0.00 0.00 0.00 3.77
262 263 1.425412 CTACGACAAGGAACCCAACG 58.575 55.000 0.00 0.00 0.00 4.10
263 264 0.033781 TACGACAAGGAACCCAACGG 59.966 55.000 0.00 0.00 0.00 4.44
264 265 2.613506 CGACAAGGAACCCAACGGC 61.614 63.158 0.00 0.00 0.00 5.68
265 266 2.593436 ACAAGGAACCCAACGGCG 60.593 61.111 4.80 4.80 0.00 6.46
266 267 2.593436 CAAGGAACCCAACGGCGT 60.593 61.111 6.77 6.77 0.00 5.68
267 268 2.593436 AAGGAACCCAACGGCGTG 60.593 61.111 15.70 7.97 0.00 5.34
268 269 4.636435 AGGAACCCAACGGCGTGG 62.636 66.667 15.70 14.79 38.51 4.94
269 270 4.941309 GGAACCCAACGGCGTGGT 62.941 66.667 15.70 15.57 36.90 4.16
270 271 3.656045 GAACCCAACGGCGTGGTG 61.656 66.667 20.92 13.27 36.90 4.17
280 281 2.353030 GCGTGGTGCGTTTTGGTC 60.353 61.111 0.00 0.00 43.66 4.02
281 282 2.330041 CGTGGTGCGTTTTGGTCC 59.670 61.111 0.00 0.00 35.54 4.46
282 283 2.184167 CGTGGTGCGTTTTGGTCCT 61.184 57.895 0.00 0.00 35.54 3.85
283 284 0.881159 CGTGGTGCGTTTTGGTCCTA 60.881 55.000 0.00 0.00 35.54 2.94
284 285 0.872388 GTGGTGCGTTTTGGTCCTAG 59.128 55.000 0.00 0.00 0.00 3.02
285 286 0.250553 TGGTGCGTTTTGGTCCTAGG 60.251 55.000 0.82 0.82 0.00 3.02
286 287 0.250597 GGTGCGTTTTGGTCCTAGGT 60.251 55.000 9.08 0.00 0.00 3.08
287 288 0.872388 GTGCGTTTTGGTCCTAGGTG 59.128 55.000 9.08 0.00 0.00 4.00
288 289 0.887387 TGCGTTTTGGTCCTAGGTGC 60.887 55.000 9.08 3.06 0.00 5.01
289 290 1.583495 GCGTTTTGGTCCTAGGTGCC 61.583 60.000 9.08 12.90 0.00 5.01
290 291 1.296056 CGTTTTGGTCCTAGGTGCCG 61.296 60.000 9.08 0.00 0.00 5.69
291 292 0.250597 GTTTTGGTCCTAGGTGCCGT 60.251 55.000 9.08 0.00 0.00 5.68
292 293 0.250553 TTTTGGTCCTAGGTGCCGTG 60.251 55.000 9.08 0.00 0.00 4.94
293 294 1.122632 TTTGGTCCTAGGTGCCGTGA 61.123 55.000 9.08 0.90 0.00 4.35
294 295 0.907704 TTGGTCCTAGGTGCCGTGAT 60.908 55.000 9.08 0.00 0.00 3.06
295 296 1.327690 TGGTCCTAGGTGCCGTGATC 61.328 60.000 9.08 0.00 0.00 2.92
296 297 1.043673 GGTCCTAGGTGCCGTGATCT 61.044 60.000 9.08 0.00 0.00 2.75
297 298 0.103208 GTCCTAGGTGCCGTGATCTG 59.897 60.000 9.08 0.00 0.00 2.90
298 299 0.033503 TCCTAGGTGCCGTGATCTGA 60.034 55.000 9.08 0.00 0.00 3.27
299 300 1.043816 CCTAGGTGCCGTGATCTGAT 58.956 55.000 0.00 0.00 0.00 2.90
300 301 1.000283 CCTAGGTGCCGTGATCTGATC 60.000 57.143 10.72 10.72 0.00 2.92
301 302 1.959985 CTAGGTGCCGTGATCTGATCT 59.040 52.381 17.82 0.00 0.00 2.75
302 303 1.198713 AGGTGCCGTGATCTGATCTT 58.801 50.000 17.82 0.00 0.00 2.40
303 304 1.137872 AGGTGCCGTGATCTGATCTTC 59.862 52.381 17.82 10.30 0.00 2.87
304 305 1.134699 GGTGCCGTGATCTGATCTTCA 60.135 52.381 17.82 8.03 0.00 3.02
305 306 2.200067 GTGCCGTGATCTGATCTTCAG 58.800 52.381 17.82 6.27 45.59 3.02
306 307 1.216122 GCCGTGATCTGATCTTCAGC 58.784 55.000 17.82 11.61 43.95 4.26
307 308 1.472201 GCCGTGATCTGATCTTCAGCA 60.472 52.381 17.82 0.00 43.95 4.41
315 316 4.718940 TCTGATCTTCAGCATCGTACAA 57.281 40.909 0.00 0.00 43.95 2.41
356 357 1.599047 GTGCTGGCCTTCAGAGCTA 59.401 57.895 12.74 0.00 46.18 3.32
357 358 0.179936 GTGCTGGCCTTCAGAGCTAT 59.820 55.000 12.74 0.00 46.18 2.97
358 359 0.467384 TGCTGGCCTTCAGAGCTATC 59.533 55.000 12.74 0.00 46.18 2.08
359 360 0.250252 GCTGGCCTTCAGAGCTATCC 60.250 60.000 3.32 0.00 46.18 2.59
360 361 1.422531 CTGGCCTTCAGAGCTATCCT 58.577 55.000 3.32 0.00 46.18 3.24
361 362 2.603021 CTGGCCTTCAGAGCTATCCTA 58.397 52.381 3.32 0.00 46.18 2.94
447 453 7.219535 CCTTGTTATCAATTCAAGAAGCATTCG 59.780 37.037 5.61 0.00 40.59 3.34
476 494 2.913617 TCCTCAGTCCTCACTCACTAGA 59.086 50.000 0.00 0.00 0.00 2.43
511 529 0.949105 GCACAAGAACCACCGACGAT 60.949 55.000 0.00 0.00 0.00 3.73
533 551 1.610363 TAGATCTAGAGCTGGCCGTG 58.390 55.000 20.68 0.00 0.00 4.94
534 552 1.112315 AGATCTAGAGCTGGCCGTGG 61.112 60.000 10.32 0.00 0.00 4.94
535 553 2.707529 GATCTAGAGCTGGCCGTGGC 62.708 65.000 1.16 1.16 41.06 5.01
577 599 1.671845 GTGGTCGCTCGAGTATCTTCT 59.328 52.381 15.13 0.00 0.00 2.85
579 601 2.355132 TGGTCGCTCGAGTATCTTCTTC 59.645 50.000 15.13 0.00 0.00 2.87
580 602 2.287129 GGTCGCTCGAGTATCTTCTTCC 60.287 54.545 15.13 1.02 0.00 3.46
581 603 2.614983 GTCGCTCGAGTATCTTCTTCCT 59.385 50.000 15.13 0.00 0.00 3.36
582 604 2.873472 TCGCTCGAGTATCTTCTTCCTC 59.127 50.000 15.13 0.00 0.00 3.71
651 673 1.358402 CTCCGACGAGCTCCATCTG 59.642 63.158 8.47 3.01 0.00 2.90
655 677 3.781770 GACGAGCTCCATCTGGCGG 62.782 68.421 8.47 0.00 34.44 6.13
656 678 4.598894 CGAGCTCCATCTGGCGGG 62.599 72.222 8.47 0.00 34.44 6.13
657 679 4.247380 GAGCTCCATCTGGCGGGG 62.247 72.222 0.87 0.00 34.44 5.73
683 716 1.851304 GGTGATTGAGGGATTTGGCA 58.149 50.000 0.00 0.00 0.00 4.92
718 751 1.884075 CGTCAGACGGTTGGGATCCA 61.884 60.000 15.64 0.00 38.08 3.41
727 760 2.094234 CGGTTGGGATCCAATTGGTTTC 60.094 50.000 23.76 19.78 45.80 2.78
729 762 1.846007 TGGGATCCAATTGGTTTCCG 58.154 50.000 27.88 6.89 35.64 4.30
745 2193 2.413310 TCCGCTAAGGTTTGAATCCC 57.587 50.000 0.00 0.00 41.99 3.85
747 2195 1.389555 CGCTAAGGTTTGAATCCCCC 58.610 55.000 0.00 0.00 0.00 5.40
770 2389 1.251251 CCCTTCCTTTCAAGCACAGG 58.749 55.000 0.00 0.00 0.00 4.00
789 2408 7.333528 CACAGGTGCCATGTATTATTAAGTT 57.666 36.000 0.00 0.00 0.00 2.66
793 2412 8.292448 CAGGTGCCATGTATTATTAAGTTGATC 58.708 37.037 0.00 0.00 0.00 2.92
813 2432 2.158475 TCCAAAGGGCTGATTTGAGTGT 60.158 45.455 10.51 0.00 39.50 3.55
834 2459 0.804364 TTCAACATGGCAGATGCGAC 59.196 50.000 0.00 0.00 43.26 5.19
1199 2830 3.741476 GCCCGACAAGCAAGCCAG 61.741 66.667 0.00 0.00 0.00 4.85
1677 3572 1.993370 CTAAAGTGGCAGTACGAGTGC 59.007 52.381 0.00 0.00 43.61 4.40
1906 3801 8.763356 GTTTGATCTTGTATTGTTTGCATTGAA 58.237 29.630 0.00 0.00 0.00 2.69
2320 4225 9.722056 GATAATTTTGCAGGTACTTGATTGTAG 57.278 33.333 9.51 0.00 34.60 2.74
2938 4851 1.203162 ACAGGGGCATCATTCAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
3294 5209 7.177878 ACCTCACTGGAATATCTCATTTGTTT 58.822 34.615 0.00 0.00 39.71 2.83
3815 5850 0.530870 GGCGAGCTCCATAACCTCAC 60.531 60.000 8.47 0.00 0.00 3.51
3832 5867 5.276440 ACCTCACAGACCTTGATCTTAGAT 58.724 41.667 0.00 0.00 0.00 1.98
4271 6320 0.670854 GTCCTCTGACGGCTTCAACC 60.671 60.000 0.00 0.00 32.21 3.77
4309 6358 5.392380 CCAGAAAACTATCCATGACAGCAAC 60.392 44.000 0.00 0.00 0.00 4.17
4543 6613 5.237815 CACACATGTACTACACAGTCCATT 58.762 41.667 0.00 0.00 41.51 3.16
4558 6628 1.664873 CATTTTCCCGCTGCCACAA 59.335 52.632 0.00 0.00 0.00 3.33
4707 6777 8.677300 AGTCATTATGTTGGTAGCATAGTTTTG 58.323 33.333 0.00 0.00 31.44 2.44
4708 6778 8.458843 GTCATTATGTTGGTAGCATAGTTTTGT 58.541 33.333 0.00 0.00 31.44 2.83
4709 6779 9.674068 TCATTATGTTGGTAGCATAGTTTTGTA 57.326 29.630 0.00 0.00 31.44 2.41
4738 6808 4.876107 TCGAGTGCCTCTCATTTAAATTCC 59.124 41.667 0.00 0.00 42.88 3.01
4739 6809 4.635765 CGAGTGCCTCTCATTTAAATTCCA 59.364 41.667 0.00 0.00 42.88 3.53
4857 6928 5.321927 CACCTGTACCTGGAACCTTAATTT 58.678 41.667 0.00 0.00 0.00 1.82
4886 6957 6.567321 GCTGAACATATATAGTTGCCTGCTTG 60.567 42.308 5.59 0.00 0.00 4.01
4904 6977 0.764369 TGGCAGGGTGTCTCTTCAGT 60.764 55.000 0.00 0.00 0.00 3.41
4907 6980 2.038557 GGCAGGGTGTCTCTTCAGTTAA 59.961 50.000 0.00 0.00 0.00 2.01
4916 6989 7.159372 GGTGTCTCTTCAGTTAATTTCCAGTA 58.841 38.462 0.00 0.00 0.00 2.74
4926 6999 9.214957 TCAGTTAATTTCCAGTACAGTAATGTG 57.785 33.333 5.98 0.00 0.00 3.21
4933 7006 5.023452 TCCAGTACAGTAATGTGATGGACT 58.977 41.667 20.74 8.18 38.69 3.85
4941 7014 3.726557 AATGTGATGGACTGATGGTGT 57.273 42.857 0.00 0.00 0.00 4.16
4942 7015 2.477845 TGTGATGGACTGATGGTGTG 57.522 50.000 0.00 0.00 0.00 3.82
4945 7018 2.027745 GTGATGGACTGATGGTGTGACT 60.028 50.000 0.00 0.00 0.00 3.41
4951 7024 5.630121 TGGACTGATGGTGTGACTTTATTT 58.370 37.500 0.00 0.00 0.00 1.40
4953 7026 7.227873 TGGACTGATGGTGTGACTTTATTTAA 58.772 34.615 0.00 0.00 0.00 1.52
4954 7027 7.390440 TGGACTGATGGTGTGACTTTATTTAAG 59.610 37.037 0.00 0.00 39.87 1.85
4955 7028 7.145932 ACTGATGGTGTGACTTTATTTAAGC 57.854 36.000 0.00 0.00 37.37 3.09
4956 7029 6.151144 ACTGATGGTGTGACTTTATTTAAGCC 59.849 38.462 0.00 0.00 37.37 4.35
4957 7030 6.245408 TGATGGTGTGACTTTATTTAAGCCT 58.755 36.000 0.00 0.00 37.37 4.58
4958 7031 5.957842 TGGTGTGACTTTATTTAAGCCTG 57.042 39.130 0.00 0.00 37.37 4.85
4959 7032 5.381757 TGGTGTGACTTTATTTAAGCCTGT 58.618 37.500 0.00 0.00 37.37 4.00
4960 7033 5.830991 TGGTGTGACTTTATTTAAGCCTGTT 59.169 36.000 0.00 0.00 37.37 3.16
4961 7034 6.999272 TGGTGTGACTTTATTTAAGCCTGTTA 59.001 34.615 0.00 0.00 37.37 2.41
4962 7035 7.668052 TGGTGTGACTTTATTTAAGCCTGTTAT 59.332 33.333 0.00 0.00 37.37 1.89
4963 7036 7.968405 GGTGTGACTTTATTTAAGCCTGTTATG 59.032 37.037 0.00 0.00 37.37 1.90
4964 7037 8.726988 GTGTGACTTTATTTAAGCCTGTTATGA 58.273 33.333 0.00 0.00 37.37 2.15
4965 7038 8.726988 TGTGACTTTATTTAAGCCTGTTATGAC 58.273 33.333 0.00 0.00 37.37 3.06
4966 7039 8.182227 GTGACTTTATTTAAGCCTGTTATGACC 58.818 37.037 0.00 0.00 37.37 4.02
4967 7040 7.065324 TGACTTTATTTAAGCCTGTTATGACCG 59.935 37.037 0.00 0.00 37.37 4.79
4968 7041 6.317893 ACTTTATTTAAGCCTGTTATGACCGG 59.682 38.462 0.00 0.00 37.37 5.28
4975 7048 3.401033 CCTGTTATGACCGGCATATCA 57.599 47.619 19.51 19.51 39.15 2.15
4976 7049 3.329386 CCTGTTATGACCGGCATATCAG 58.671 50.000 28.18 28.18 46.91 2.90
4977 7050 3.329386 CTGTTATGACCGGCATATCAGG 58.671 50.000 27.85 18.54 45.30 3.86
4978 7051 2.038426 TGTTATGACCGGCATATCAGGG 59.962 50.000 18.01 0.00 39.15 4.45
4979 7052 1.275666 TATGACCGGCATATCAGGGG 58.724 55.000 0.00 0.00 38.44 4.79
4980 7053 2.032681 GACCGGCATATCAGGGGC 59.967 66.667 0.00 0.00 34.03 5.80
4981 7054 2.448542 ACCGGCATATCAGGGGCT 60.449 61.111 0.00 0.00 34.03 5.19
4982 7055 2.056906 GACCGGCATATCAGGGGCTT 62.057 60.000 0.00 0.00 34.03 4.35
4983 7056 0.766674 ACCGGCATATCAGGGGCTTA 60.767 55.000 0.00 0.00 34.03 3.09
4984 7057 0.036010 CCGGCATATCAGGGGCTTAG 60.036 60.000 0.00 0.00 0.00 2.18
4985 7058 0.674895 CGGCATATCAGGGGCTTAGC 60.675 60.000 0.00 0.00 0.00 3.09
4997 7070 2.959465 GGCTTAGCCCAGTGGATTAT 57.041 50.000 13.12 0.00 44.06 1.28
4998 7071 2.508526 GGCTTAGCCCAGTGGATTATG 58.491 52.381 13.12 6.14 44.06 1.90
4999 7072 2.508526 GCTTAGCCCAGTGGATTATGG 58.491 52.381 11.95 0.00 36.27 2.74
5000 7073 2.508526 CTTAGCCCAGTGGATTATGGC 58.491 52.381 11.95 3.97 42.48 4.40
5001 7074 0.771127 TAGCCCAGTGGATTATGGCC 59.229 55.000 11.95 0.00 43.18 5.36
5002 7075 1.531602 GCCCAGTGGATTATGGCCC 60.532 63.158 11.95 0.00 36.07 5.80
5003 7076 1.929745 CCCAGTGGATTATGGCCCA 59.070 57.895 11.95 0.00 35.10 5.36
5004 7077 0.261402 CCCAGTGGATTATGGCCCAA 59.739 55.000 11.95 0.00 35.10 4.12
5005 7078 1.696063 CCAGTGGATTATGGCCCAAG 58.304 55.000 1.68 0.00 33.69 3.61
5006 7079 1.063717 CCAGTGGATTATGGCCCAAGT 60.064 52.381 1.68 0.00 33.69 3.16
5007 7080 2.624029 CCAGTGGATTATGGCCCAAGTT 60.624 50.000 1.68 0.00 33.69 2.66
5008 7081 3.372566 CCAGTGGATTATGGCCCAAGTTA 60.373 47.826 1.68 0.00 33.69 2.24
5009 7082 4.473444 CAGTGGATTATGGCCCAAGTTAT 58.527 43.478 0.00 0.00 33.69 1.89
5010 7083 4.520492 CAGTGGATTATGGCCCAAGTTATC 59.480 45.833 0.00 0.00 33.69 1.75
5011 7084 4.416848 AGTGGATTATGGCCCAAGTTATCT 59.583 41.667 0.00 0.00 33.69 1.98
5012 7085 5.103515 AGTGGATTATGGCCCAAGTTATCTT 60.104 40.000 0.00 0.00 33.69 2.40
5013 7086 6.102615 AGTGGATTATGGCCCAAGTTATCTTA 59.897 38.462 0.00 0.00 33.69 2.10
5014 7087 6.948309 GTGGATTATGGCCCAAGTTATCTTAT 59.052 38.462 0.00 0.00 33.69 1.73
5015 7088 7.451566 GTGGATTATGGCCCAAGTTATCTTATT 59.548 37.037 0.00 0.00 33.69 1.40
5016 7089 7.451255 TGGATTATGGCCCAAGTTATCTTATTG 59.549 37.037 0.00 0.00 32.07 1.90
5017 7090 7.451566 GGATTATGGCCCAAGTTATCTTATTGT 59.548 37.037 0.00 0.00 32.07 2.71
5018 7091 8.782137 ATTATGGCCCAAGTTATCTTATTGTT 57.218 30.769 0.00 0.00 32.07 2.83
5019 7092 9.875708 ATTATGGCCCAAGTTATCTTATTGTTA 57.124 29.630 0.00 0.00 32.07 2.41
5020 7093 9.875708 TTATGGCCCAAGTTATCTTATTGTTAT 57.124 29.630 0.00 0.00 32.07 1.89
5021 7094 8.782137 ATGGCCCAAGTTATCTTATTGTTATT 57.218 30.769 0.00 0.00 32.07 1.40
5022 7095 9.875708 ATGGCCCAAGTTATCTTATTGTTATTA 57.124 29.630 0.00 0.00 32.07 0.98
5023 7096 9.349713 TGGCCCAAGTTATCTTATTGTTATTAG 57.650 33.333 0.00 0.00 32.07 1.73
5024 7097 8.793592 GGCCCAAGTTATCTTATTGTTATTAGG 58.206 37.037 0.00 0.00 32.07 2.69
5025 7098 9.569122 GCCCAAGTTATCTTATTGTTATTAGGA 57.431 33.333 0.00 0.00 32.07 2.94
5034 7107 7.450903 TCTTATTGTTATTAGGAGCTTAGCCC 58.549 38.462 0.00 1.79 0.00 5.19
5035 7108 5.646692 ATTGTTATTAGGAGCTTAGCCCA 57.353 39.130 12.82 0.00 0.00 5.36
5036 7109 5.444744 TTGTTATTAGGAGCTTAGCCCAA 57.555 39.130 12.82 6.73 0.00 4.12
5037 7110 5.646692 TGTTATTAGGAGCTTAGCCCAAT 57.353 39.130 12.82 11.73 0.00 3.16
5038 7111 6.013554 TGTTATTAGGAGCTTAGCCCAATT 57.986 37.500 12.82 1.73 0.00 2.32
5039 7112 7.144234 TGTTATTAGGAGCTTAGCCCAATTA 57.856 36.000 12.82 4.18 0.00 1.40
5040 7113 7.755618 TGTTATTAGGAGCTTAGCCCAATTAT 58.244 34.615 12.82 4.69 0.00 1.28
5041 7114 7.883311 TGTTATTAGGAGCTTAGCCCAATTATC 59.117 37.037 12.82 0.00 0.00 1.75
5042 7115 6.710499 ATTAGGAGCTTAGCCCAATTATCT 57.290 37.500 12.82 0.00 0.00 1.98
5043 7116 6.515512 TTAGGAGCTTAGCCCAATTATCTT 57.484 37.500 12.82 0.00 0.00 2.40
5044 7117 7.626999 TTAGGAGCTTAGCCCAATTATCTTA 57.373 36.000 12.82 0.00 0.00 2.10
5045 7118 6.710499 AGGAGCTTAGCCCAATTATCTTAT 57.290 37.500 12.82 0.00 0.00 1.73
5046 7119 6.716284 AGGAGCTTAGCCCAATTATCTTATC 58.284 40.000 12.82 0.00 0.00 1.75
5047 7120 5.582665 GGAGCTTAGCCCAATTATCTTATCG 59.417 44.000 0.00 0.00 0.00 2.92
5048 7121 6.115448 AGCTTAGCCCAATTATCTTATCGT 57.885 37.500 0.00 0.00 0.00 3.73
5049 7122 6.534634 AGCTTAGCCCAATTATCTTATCGTT 58.465 36.000 0.00 0.00 0.00 3.85
5050 7123 7.676947 AGCTTAGCCCAATTATCTTATCGTTA 58.323 34.615 0.00 0.00 0.00 3.18
5051 7124 8.322091 AGCTTAGCCCAATTATCTTATCGTTAT 58.678 33.333 0.00 0.00 0.00 1.89
5052 7125 8.947115 GCTTAGCCCAATTATCTTATCGTTATT 58.053 33.333 0.00 0.00 0.00 1.40
5056 7129 8.822805 AGCCCAATTATCTTATCGTTATTAGGA 58.177 33.333 0.00 0.00 0.00 2.94
5057 7130 9.614792 GCCCAATTATCTTATCGTTATTAGGAT 57.385 33.333 0.00 0.00 33.68 3.24
5070 7143 8.241497 TCGTTATTAGGATAGTTTGCTTAGGA 57.759 34.615 0.00 0.00 0.00 2.94
5071 7144 8.358148 TCGTTATTAGGATAGTTTGCTTAGGAG 58.642 37.037 0.00 0.00 0.00 3.69
5089 7162 4.598257 CACTAGTGCAGAACCGGG 57.402 61.111 10.54 0.00 0.00 5.73
5090 7163 1.741770 CACTAGTGCAGAACCGGGC 60.742 63.158 10.54 0.00 0.00 6.13
5091 7164 1.913762 ACTAGTGCAGAACCGGGCT 60.914 57.895 6.32 0.00 0.00 5.19
5092 7165 0.613853 ACTAGTGCAGAACCGGGCTA 60.614 55.000 6.32 0.00 0.00 3.93
5093 7166 0.753262 CTAGTGCAGAACCGGGCTAT 59.247 55.000 6.32 0.00 0.00 2.97
5094 7167 1.961394 CTAGTGCAGAACCGGGCTATA 59.039 52.381 6.32 0.00 0.00 1.31
5095 7168 0.753262 AGTGCAGAACCGGGCTATAG 59.247 55.000 6.32 0.00 0.00 1.31
5096 7169 0.880718 GTGCAGAACCGGGCTATAGC 60.881 60.000 16.78 16.78 41.14 2.97
5097 7170 1.334384 TGCAGAACCGGGCTATAGCA 61.334 55.000 25.53 6.20 44.36 3.49
5098 7171 0.880718 GCAGAACCGGGCTATAGCAC 60.881 60.000 25.53 21.77 44.36 4.40
5099 7172 0.249911 CAGAACCGGGCTATAGCACC 60.250 60.000 25.53 21.08 42.67 5.01
5100 7173 1.300697 GAACCGGGCTATAGCACCG 60.301 63.158 31.50 31.50 46.81 4.94
5103 7176 2.819550 CGGGCTATAGCACCGGTT 59.180 61.111 31.12 0.00 44.99 4.44
5104 7177 1.145377 CGGGCTATAGCACCGGTTT 59.855 57.895 31.12 0.00 44.99 3.27
5105 7178 1.157870 CGGGCTATAGCACCGGTTTG 61.158 60.000 31.12 12.97 44.99 2.93
5106 7179 0.107361 GGGCTATAGCACCGGTTTGT 60.107 55.000 25.53 0.00 44.36 2.83
5107 7180 1.139455 GGGCTATAGCACCGGTTTGTA 59.861 52.381 25.53 0.00 44.36 2.41
5108 7181 2.420408 GGGCTATAGCACCGGTTTGTAA 60.420 50.000 25.53 0.00 44.36 2.41
5109 7182 2.870411 GGCTATAGCACCGGTTTGTAAG 59.130 50.000 25.53 0.90 44.36 2.34
5110 7183 3.431207 GGCTATAGCACCGGTTTGTAAGA 60.431 47.826 25.53 0.00 44.36 2.10
5111 7184 3.554731 GCTATAGCACCGGTTTGTAAGAC 59.445 47.826 20.01 0.00 41.59 3.01
5112 7185 2.460757 TAGCACCGGTTTGTAAGACC 57.539 50.000 2.97 0.00 0.00 3.85
5113 7186 0.250597 AGCACCGGTTTGTAAGACCC 60.251 55.000 2.97 0.00 33.49 4.46
5114 7187 0.250597 GCACCGGTTTGTAAGACCCT 60.251 55.000 2.97 0.00 33.49 4.34
5115 7188 1.816572 GCACCGGTTTGTAAGACCCTT 60.817 52.381 2.97 0.00 33.49 3.95
5116 7189 2.578786 CACCGGTTTGTAAGACCCTTT 58.421 47.619 2.97 0.00 33.49 3.11
5117 7190 3.742385 CACCGGTTTGTAAGACCCTTTA 58.258 45.455 2.97 0.00 33.49 1.85
5118 7191 3.749609 CACCGGTTTGTAAGACCCTTTAG 59.250 47.826 2.97 0.00 33.49 1.85
5119 7192 3.392285 ACCGGTTTGTAAGACCCTTTAGT 59.608 43.478 0.00 0.00 33.49 2.24
5120 7193 3.749609 CCGGTTTGTAAGACCCTTTAGTG 59.250 47.826 0.00 0.00 33.49 2.74
5121 7194 3.187842 CGGTTTGTAAGACCCTTTAGTGC 59.812 47.826 0.00 0.00 33.49 4.40
5122 7195 3.504906 GGTTTGTAAGACCCTTTAGTGCC 59.495 47.826 0.00 0.00 0.00 5.01
5123 7196 2.754946 TGTAAGACCCTTTAGTGCCG 57.245 50.000 0.00 0.00 0.00 5.69
5124 7197 1.276989 TGTAAGACCCTTTAGTGCCGG 59.723 52.381 0.00 0.00 0.00 6.13
5125 7198 1.277273 GTAAGACCCTTTAGTGCCGGT 59.723 52.381 1.90 0.00 0.00 5.28
5126 7199 0.769247 AAGACCCTTTAGTGCCGGTT 59.231 50.000 1.90 0.00 0.00 4.44
5127 7200 0.323957 AGACCCTTTAGTGCCGGTTC 59.676 55.000 1.90 0.00 0.00 3.62
5128 7201 0.035739 GACCCTTTAGTGCCGGTTCA 59.964 55.000 1.90 0.00 0.00 3.18
5129 7202 0.036306 ACCCTTTAGTGCCGGTTCAG 59.964 55.000 1.90 0.00 0.00 3.02
5130 7203 0.036306 CCCTTTAGTGCCGGTTCAGT 59.964 55.000 1.90 0.00 0.00 3.41
5131 7204 1.276989 CCCTTTAGTGCCGGTTCAGTA 59.723 52.381 1.90 0.00 0.00 2.74
5132 7205 2.289819 CCCTTTAGTGCCGGTTCAGTAA 60.290 50.000 1.90 4.22 31.92 2.24
5133 7206 2.740447 CCTTTAGTGCCGGTTCAGTAAC 59.260 50.000 1.90 0.00 33.12 2.50
5142 7215 2.460757 GGTTCAGTAACCGGCACTAA 57.539 50.000 0.00 0.00 45.61 2.24
5143 7216 2.769893 GGTTCAGTAACCGGCACTAAA 58.230 47.619 0.00 0.00 45.61 1.85
5144 7217 2.740447 GGTTCAGTAACCGGCACTAAAG 59.260 50.000 0.00 0.00 45.61 1.85
5145 7218 3.396560 GTTCAGTAACCGGCACTAAAGT 58.603 45.455 0.00 0.00 0.00 2.66
5146 7219 5.853552 GGTTCAGTAACCGGCACTAAAGTG 61.854 50.000 0.00 5.73 45.61 3.16
5159 7232 4.324267 CACTAAAGTGTGGGGACTAAAGG 58.676 47.826 1.81 0.00 40.96 3.11
5160 7233 3.978672 ACTAAAGTGTGGGGACTAAAGGT 59.021 43.478 0.00 0.00 0.00 3.50
5161 7234 3.503800 AAAGTGTGGGGACTAAAGGTC 57.496 47.619 0.00 0.00 43.79 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.473886 TAGAAGAGGGGCTATGGGGC 60.474 60.000 0.00 0.00 40.05 5.80
4 5 1.132689 AGTAGAAGAGGGGCTATGGGG 60.133 57.143 0.00 0.00 0.00 4.96
5 6 2.252714 GAGTAGAAGAGGGGCTATGGG 58.747 57.143 0.00 0.00 0.00 4.00
6 7 2.252714 GGAGTAGAAGAGGGGCTATGG 58.747 57.143 0.00 0.00 0.00 2.74
7 8 1.889829 CGGAGTAGAAGAGGGGCTATG 59.110 57.143 0.00 0.00 0.00 2.23
8 9 1.781529 TCGGAGTAGAAGAGGGGCTAT 59.218 52.381 0.00 0.00 0.00 2.97
9 10 1.133853 GTCGGAGTAGAAGAGGGGCTA 60.134 57.143 0.00 0.00 0.00 3.93
10 11 0.396001 GTCGGAGTAGAAGAGGGGCT 60.396 60.000 0.00 0.00 0.00 5.19
11 12 1.393487 GGTCGGAGTAGAAGAGGGGC 61.393 65.000 0.00 0.00 0.00 5.80
12 13 0.033405 TGGTCGGAGTAGAAGAGGGG 60.033 60.000 0.00 0.00 0.00 4.79
13 14 1.683917 CATGGTCGGAGTAGAAGAGGG 59.316 57.143 0.00 0.00 0.00 4.30
14 15 2.359531 GACATGGTCGGAGTAGAAGAGG 59.640 54.545 0.00 0.00 0.00 3.69
15 16 3.701532 GACATGGTCGGAGTAGAAGAG 57.298 52.381 0.00 0.00 0.00 2.85
27 28 1.163420 TGTGGCACAACGACATGGTC 61.163 55.000 19.74 0.00 44.16 4.02
28 29 0.749818 TTGTGGCACAACGACATGGT 60.750 50.000 28.09 0.00 44.16 3.55
29 30 2.028936 TTGTGGCACAACGACATGG 58.971 52.632 28.09 0.00 44.16 3.66
37 38 2.610532 TAGGCGGTGTTGTGGCACAA 62.611 55.000 28.09 28.09 44.16 3.33
38 39 2.404566 ATAGGCGGTGTTGTGGCACA 62.405 55.000 17.96 17.96 40.89 4.57
39 40 0.391927 TATAGGCGGTGTTGTGGCAC 60.392 55.000 11.55 11.55 38.56 5.01
40 41 0.107897 CTATAGGCGGTGTTGTGGCA 60.108 55.000 0.00 0.00 0.00 4.92
41 42 0.814010 CCTATAGGCGGTGTTGTGGC 60.814 60.000 5.67 0.00 0.00 5.01
42 43 3.379650 CCTATAGGCGGTGTTGTGG 57.620 57.895 5.67 0.00 0.00 4.17
60 61 3.672295 CTCGGCAAGGAGGTCCAGC 62.672 68.421 0.00 1.95 38.89 4.85
61 62 2.581354 CTCGGCAAGGAGGTCCAG 59.419 66.667 0.00 0.00 38.89 3.86
75 76 3.877357 TACAGCGCGCTCTCCTCG 61.877 66.667 34.28 21.69 0.00 4.63
76 77 2.278271 GTACAGCGCGCTCTCCTC 60.278 66.667 34.28 15.99 0.00 3.71
77 78 3.057547 CTGTACAGCGCGCTCTCCT 62.058 63.158 34.28 16.25 0.00 3.69
78 79 2.580867 CTGTACAGCGCGCTCTCC 60.581 66.667 34.28 21.29 0.00 3.71
79 80 2.580867 CCTGTACAGCGCGCTCTC 60.581 66.667 34.28 23.39 0.00 3.20
80 81 4.803426 GCCTGTACAGCGCGCTCT 62.803 66.667 34.28 24.14 0.00 4.09
87 88 3.204827 CCATGCCGCCTGTACAGC 61.205 66.667 17.86 11.72 0.00 4.40
88 89 1.815421 GACCATGCCGCCTGTACAG 60.815 63.158 16.34 16.34 0.00 2.74
89 90 2.267642 GACCATGCCGCCTGTACA 59.732 61.111 0.00 0.00 0.00 2.90
90 91 2.513897 GGACCATGCCGCCTGTAC 60.514 66.667 0.00 0.00 0.00 2.90
91 92 4.155733 CGGACCATGCCGCCTGTA 62.156 66.667 0.00 0.00 45.38 2.74
98 99 0.606604 ATATACCGTCGGACCATGCC 59.393 55.000 20.51 0.00 0.00 4.40
99 100 1.271379 TCATATACCGTCGGACCATGC 59.729 52.381 20.51 0.00 0.00 4.06
100 101 3.005472 AGTTCATATACCGTCGGACCATG 59.995 47.826 20.51 16.22 0.00 3.66
101 102 3.005472 CAGTTCATATACCGTCGGACCAT 59.995 47.826 20.51 10.36 0.00 3.55
102 103 2.359848 CAGTTCATATACCGTCGGACCA 59.640 50.000 20.51 2.60 0.00 4.02
103 104 2.620115 TCAGTTCATATACCGTCGGACC 59.380 50.000 20.51 0.00 0.00 4.46
104 105 3.314635 AGTCAGTTCATATACCGTCGGAC 59.685 47.826 20.51 3.31 0.00 4.79
105 106 3.548770 AGTCAGTTCATATACCGTCGGA 58.451 45.455 20.51 1.60 0.00 4.55
106 107 3.984508 AGTCAGTTCATATACCGTCGG 57.015 47.619 10.48 10.48 0.00 4.79
107 108 7.925703 AAAATAGTCAGTTCATATACCGTCG 57.074 36.000 0.00 0.00 0.00 5.12
130 131 8.877779 CCAAATCAACACTCAAACAATGTTAAA 58.122 29.630 0.00 0.00 34.84 1.52
131 132 8.037758 ACCAAATCAACACTCAAACAATGTTAA 58.962 29.630 0.00 0.00 34.84 2.01
132 133 7.551585 ACCAAATCAACACTCAAACAATGTTA 58.448 30.769 0.00 0.00 34.84 2.41
133 134 6.405538 ACCAAATCAACACTCAAACAATGTT 58.594 32.000 0.00 0.00 37.02 2.71
134 135 5.976458 ACCAAATCAACACTCAAACAATGT 58.024 33.333 0.00 0.00 0.00 2.71
135 136 6.275335 AGACCAAATCAACACTCAAACAATG 58.725 36.000 0.00 0.00 0.00 2.82
136 137 6.469782 AGACCAAATCAACACTCAAACAAT 57.530 33.333 0.00 0.00 0.00 2.71
137 138 5.913137 AGACCAAATCAACACTCAAACAA 57.087 34.783 0.00 0.00 0.00 2.83
138 139 5.913137 AAGACCAAATCAACACTCAAACA 57.087 34.783 0.00 0.00 0.00 2.83
139 140 7.027778 ACTAAGACCAAATCAACACTCAAAC 57.972 36.000 0.00 0.00 0.00 2.93
140 141 6.018262 CGACTAAGACCAAATCAACACTCAAA 60.018 38.462 0.00 0.00 0.00 2.69
141 142 5.465390 CGACTAAGACCAAATCAACACTCAA 59.535 40.000 0.00 0.00 0.00 3.02
142 143 4.988540 CGACTAAGACCAAATCAACACTCA 59.011 41.667 0.00 0.00 0.00 3.41
143 144 4.389077 CCGACTAAGACCAAATCAACACTC 59.611 45.833 0.00 0.00 0.00 3.51
144 145 4.202326 ACCGACTAAGACCAAATCAACACT 60.202 41.667 0.00 0.00 0.00 3.55
145 146 4.062991 ACCGACTAAGACCAAATCAACAC 58.937 43.478 0.00 0.00 0.00 3.32
146 147 4.062293 CACCGACTAAGACCAAATCAACA 58.938 43.478 0.00 0.00 0.00 3.33
147 148 4.062991 ACACCGACTAAGACCAAATCAAC 58.937 43.478 0.00 0.00 0.00 3.18
148 149 4.345859 ACACCGACTAAGACCAAATCAA 57.654 40.909 0.00 0.00 0.00 2.57
149 150 4.345859 AACACCGACTAAGACCAAATCA 57.654 40.909 0.00 0.00 0.00 2.57
150 151 4.753107 TCAAACACCGACTAAGACCAAATC 59.247 41.667 0.00 0.00 0.00 2.17
151 152 4.710324 TCAAACACCGACTAAGACCAAAT 58.290 39.130 0.00 0.00 0.00 2.32
152 153 4.139859 TCAAACACCGACTAAGACCAAA 57.860 40.909 0.00 0.00 0.00 3.28
153 154 3.823281 TCAAACACCGACTAAGACCAA 57.177 42.857 0.00 0.00 0.00 3.67
154 155 3.823281 TTCAAACACCGACTAAGACCA 57.177 42.857 0.00 0.00 0.00 4.02
155 156 3.120304 GCATTCAAACACCGACTAAGACC 60.120 47.826 0.00 0.00 0.00 3.85
156 157 3.120304 GGCATTCAAACACCGACTAAGAC 60.120 47.826 0.00 0.00 0.00 3.01
157 158 3.071479 GGCATTCAAACACCGACTAAGA 58.929 45.455 0.00 0.00 0.00 2.10
158 159 3.074412 AGGCATTCAAACACCGACTAAG 58.926 45.455 0.00 0.00 0.00 2.18
159 160 3.071479 GAGGCATTCAAACACCGACTAA 58.929 45.455 0.00 0.00 0.00 2.24
160 161 2.037902 TGAGGCATTCAAACACCGACTA 59.962 45.455 0.00 0.00 31.34 2.59
161 162 1.202758 TGAGGCATTCAAACACCGACT 60.203 47.619 0.00 0.00 31.34 4.18
162 163 1.234821 TGAGGCATTCAAACACCGAC 58.765 50.000 0.00 0.00 31.34 4.79
163 164 1.974265 TTGAGGCATTCAAACACCGA 58.026 45.000 0.86 0.00 42.69 4.69
216 217 9.023967 CAAGATCGACTTTGTTTTTCTCAAATT 57.976 29.630 0.00 0.00 36.61 1.82
217 218 7.168135 GCAAGATCGACTTTGTTTTTCTCAAAT 59.832 33.333 11.14 0.00 36.61 2.32
218 219 6.472163 GCAAGATCGACTTTGTTTTTCTCAAA 59.528 34.615 11.14 0.00 36.61 2.69
219 220 5.971202 GCAAGATCGACTTTGTTTTTCTCAA 59.029 36.000 11.14 0.00 36.61 3.02
220 221 5.296780 AGCAAGATCGACTTTGTTTTTCTCA 59.703 36.000 11.14 0.00 36.61 3.27
221 222 5.752712 AGCAAGATCGACTTTGTTTTTCTC 58.247 37.500 11.14 0.00 36.61 2.87
222 223 5.757850 AGCAAGATCGACTTTGTTTTTCT 57.242 34.783 11.14 0.00 36.61 2.52
223 224 5.560378 CGTAGCAAGATCGACTTTGTTTTTC 59.440 40.000 11.14 0.00 36.61 2.29
224 225 5.235616 TCGTAGCAAGATCGACTTTGTTTTT 59.764 36.000 11.14 0.96 36.61 1.94
225 226 4.748102 TCGTAGCAAGATCGACTTTGTTTT 59.252 37.500 11.14 2.80 36.61 2.43
226 227 4.150098 GTCGTAGCAAGATCGACTTTGTTT 59.850 41.667 11.14 4.66 46.54 2.83
227 228 3.673809 GTCGTAGCAAGATCGACTTTGTT 59.326 43.478 11.14 8.40 46.54 2.83
228 229 3.243336 GTCGTAGCAAGATCGACTTTGT 58.757 45.455 11.14 3.22 46.54 2.83
229 230 3.890705 GTCGTAGCAAGATCGACTTTG 57.109 47.619 9.19 6.41 46.54 2.77
233 234 2.159421 TCCTTGTCGTAGCAAGATCGAC 60.159 50.000 14.97 9.47 46.34 4.20
234 235 2.089201 TCCTTGTCGTAGCAAGATCGA 58.911 47.619 14.97 0.00 46.34 3.59
235 236 2.561733 TCCTTGTCGTAGCAAGATCG 57.438 50.000 14.97 0.00 46.34 3.69
236 237 2.930682 GGTTCCTTGTCGTAGCAAGATC 59.069 50.000 14.97 0.00 46.34 2.75
237 238 2.354805 GGGTTCCTTGTCGTAGCAAGAT 60.355 50.000 14.97 0.00 46.34 2.40
238 239 1.001633 GGGTTCCTTGTCGTAGCAAGA 59.998 52.381 14.97 3.50 46.34 3.02
239 240 1.270625 TGGGTTCCTTGTCGTAGCAAG 60.271 52.381 9.12 9.12 43.88 4.01
240 241 0.759959 TGGGTTCCTTGTCGTAGCAA 59.240 50.000 0.00 0.00 0.00 3.91
241 242 0.759959 TTGGGTTCCTTGTCGTAGCA 59.240 50.000 0.00 0.00 0.00 3.49
242 243 1.154197 GTTGGGTTCCTTGTCGTAGC 58.846 55.000 0.00 0.00 0.00 3.58
243 244 1.425412 CGTTGGGTTCCTTGTCGTAG 58.575 55.000 0.00 0.00 0.00 3.51
244 245 0.033781 CCGTTGGGTTCCTTGTCGTA 59.966 55.000 0.00 0.00 0.00 3.43
245 246 1.227734 CCGTTGGGTTCCTTGTCGT 60.228 57.895 0.00 0.00 0.00 4.34
246 247 2.613506 GCCGTTGGGTTCCTTGTCG 61.614 63.158 0.00 0.00 34.97 4.35
247 248 2.613506 CGCCGTTGGGTTCCTTGTC 61.614 63.158 0.00 0.00 34.97 3.18
248 249 2.593436 CGCCGTTGGGTTCCTTGT 60.593 61.111 0.00 0.00 34.97 3.16
249 250 2.593436 ACGCCGTTGGGTTCCTTG 60.593 61.111 0.00 0.00 33.13 3.61
250 251 2.593436 CACGCCGTTGGGTTCCTT 60.593 61.111 0.00 0.00 35.09 3.36
251 252 4.636435 CCACGCCGTTGGGTTCCT 62.636 66.667 0.00 0.00 35.09 3.36
252 253 4.941309 ACCACGCCGTTGGGTTCC 62.941 66.667 9.84 0.00 41.49 3.62
253 254 3.656045 CACCACGCCGTTGGGTTC 61.656 66.667 9.84 0.00 41.49 3.62
265 266 0.872388 CTAGGACCAAAACGCACCAC 59.128 55.000 0.00 0.00 0.00 4.16
266 267 0.250553 CCTAGGACCAAAACGCACCA 60.251 55.000 1.05 0.00 0.00 4.17
267 268 0.250597 ACCTAGGACCAAAACGCACC 60.251 55.000 17.98 0.00 0.00 5.01
268 269 0.872388 CACCTAGGACCAAAACGCAC 59.128 55.000 17.98 0.00 0.00 5.34
269 270 0.887387 GCACCTAGGACCAAAACGCA 60.887 55.000 17.98 0.00 0.00 5.24
270 271 1.583495 GGCACCTAGGACCAAAACGC 61.583 60.000 17.98 4.41 0.00 4.84
271 272 1.296056 CGGCACCTAGGACCAAAACG 61.296 60.000 17.98 6.11 0.00 3.60
272 273 0.250597 ACGGCACCTAGGACCAAAAC 60.251 55.000 17.98 0.00 0.00 2.43
273 274 0.250553 CACGGCACCTAGGACCAAAA 60.251 55.000 17.98 0.00 0.00 2.44
274 275 1.122632 TCACGGCACCTAGGACCAAA 61.123 55.000 17.98 1.94 0.00 3.28
275 276 0.907704 ATCACGGCACCTAGGACCAA 60.908 55.000 17.98 5.40 0.00 3.67
276 277 1.305802 ATCACGGCACCTAGGACCA 60.306 57.895 17.98 1.17 0.00 4.02
277 278 1.043673 AGATCACGGCACCTAGGACC 61.044 60.000 17.98 15.38 0.00 4.46
278 279 0.103208 CAGATCACGGCACCTAGGAC 59.897 60.000 17.98 6.92 0.00 3.85
279 280 0.033503 TCAGATCACGGCACCTAGGA 60.034 55.000 17.98 0.00 0.00 2.94
280 281 1.000283 GATCAGATCACGGCACCTAGG 60.000 57.143 7.41 7.41 0.00 3.02
281 282 1.959985 AGATCAGATCACGGCACCTAG 59.040 52.381 13.14 0.00 0.00 3.02
282 283 2.073252 AGATCAGATCACGGCACCTA 57.927 50.000 13.14 0.00 0.00 3.08
283 284 1.137872 GAAGATCAGATCACGGCACCT 59.862 52.381 13.14 0.00 0.00 4.00
284 285 1.134699 TGAAGATCAGATCACGGCACC 60.135 52.381 13.14 0.00 0.00 5.01
285 286 2.299993 TGAAGATCAGATCACGGCAC 57.700 50.000 13.14 0.00 0.00 5.01
295 296 5.784750 TTTTGTACGATGCTGAAGATCAG 57.215 39.130 3.00 3.00 46.90 2.90
315 316 5.048504 ACGATGCACTGTTCATCTGATTTTT 60.049 36.000 16.32 0.00 38.47 1.94
322 323 1.081892 GCACGATGCACTGTTCATCT 58.918 50.000 16.32 3.53 44.26 2.90
356 357 5.281314 TCTTCCTACTTTCTTGCCTAGGAT 58.719 41.667 14.75 0.00 35.70 3.24
357 358 4.684724 TCTTCCTACTTTCTTGCCTAGGA 58.315 43.478 14.75 0.00 34.21 2.94
358 359 5.046231 ACTTCTTCCTACTTTCTTGCCTAGG 60.046 44.000 3.67 3.67 0.00 3.02
359 360 6.043854 ACTTCTTCCTACTTTCTTGCCTAG 57.956 41.667 0.00 0.00 0.00 3.02
360 361 7.549147 TTACTTCTTCCTACTTTCTTGCCTA 57.451 36.000 0.00 0.00 0.00 3.93
361 362 4.984146 ACTTCTTCCTACTTTCTTGCCT 57.016 40.909 0.00 0.00 0.00 4.75
447 453 0.899019 GAGGACTGAGGACCAAGGTC 59.101 60.000 10.80 10.80 43.87 3.85
452 470 0.482887 TGAGTGAGGACTGAGGACCA 59.517 55.000 0.00 0.00 30.16 4.02
511 529 2.224892 ACGGCCAGCTCTAGATCTATCA 60.225 50.000 2.24 0.00 0.00 2.15
534 552 3.909086 AAGACGCTCAAGGCCAGGC 62.909 63.158 5.01 1.26 37.74 4.85
535 553 2.037136 CAAGACGCTCAAGGCCAGG 61.037 63.158 5.01 0.00 37.74 4.45
536 554 2.684843 GCAAGACGCTCAAGGCCAG 61.685 63.158 5.01 0.00 37.77 4.85
537 555 2.669569 GCAAGACGCTCAAGGCCA 60.670 61.111 5.01 0.00 37.77 5.36
538 556 3.435186 GGCAAGACGCTCAAGGCC 61.435 66.667 0.00 0.00 41.91 5.19
549 567 4.373116 GAGCGACCACCGGCAAGA 62.373 66.667 0.00 0.00 39.04 3.02
564 586 5.448438 CGAATGAGGAAGAAGATACTCGAG 58.552 45.833 11.84 11.84 32.76 4.04
570 592 4.122776 GCAAGCGAATGAGGAAGAAGATA 58.877 43.478 0.00 0.00 0.00 1.98
632 654 1.826054 AGATGGAGCTCGTCGGAGG 60.826 63.158 7.83 0.00 40.80 4.30
633 655 1.358402 CAGATGGAGCTCGTCGGAG 59.642 63.158 7.83 1.35 43.46 4.63
634 656 2.121538 CCAGATGGAGCTCGTCGGA 61.122 63.158 15.83 0.00 36.53 4.55
635 657 2.415010 CCAGATGGAGCTCGTCGG 59.585 66.667 7.83 9.03 36.53 4.79
636 658 2.279120 GCCAGATGGAGCTCGTCG 60.279 66.667 7.83 5.38 36.53 5.12
637 659 2.279120 CGCCAGATGGAGCTCGTC 60.279 66.667 7.83 8.59 37.39 4.20
638 660 3.842923 CCGCCAGATGGAGCTCGT 61.843 66.667 7.83 0.00 37.39 4.18
639 661 4.598894 CCCGCCAGATGGAGCTCG 62.599 72.222 7.83 0.00 37.39 5.03
640 662 4.247380 CCCCGCCAGATGGAGCTC 62.247 72.222 4.71 4.71 37.39 4.09
655 677 4.090588 TCAATCACCGTCGCCCCC 62.091 66.667 0.00 0.00 0.00 5.40
656 678 2.511600 CTCAATCACCGTCGCCCC 60.512 66.667 0.00 0.00 0.00 5.80
657 679 2.511600 CCTCAATCACCGTCGCCC 60.512 66.667 0.00 0.00 0.00 6.13
669 702 0.178938 TGGCTTGCCAAATCCCTCAA 60.179 50.000 12.40 0.00 0.00 3.02
703 736 1.340991 CCAATTGGATCCCAACCGTCT 60.341 52.381 20.50 0.00 46.95 4.18
707 740 2.236146 GGAAACCAATTGGATCCCAACC 59.764 50.000 31.22 17.54 46.95 3.77
718 751 3.892588 TCAAACCTTAGCGGAAACCAATT 59.107 39.130 0.00 0.00 36.31 2.32
727 760 1.389555 GGGGATTCAAACCTTAGCGG 58.610 55.000 0.00 0.00 39.35 5.52
751 2199 1.251251 CCTGTGCTTGAAAGGAAGGG 58.749 55.000 0.00 0.00 32.43 3.95
752 2200 1.610522 CACCTGTGCTTGAAAGGAAGG 59.389 52.381 9.56 9.56 34.97 3.46
770 2389 8.165239 TGGATCAACTTAATAATACATGGCAC 57.835 34.615 0.00 0.00 0.00 5.01
783 2402 4.380843 TCAGCCCTTTGGATCAACTTAA 57.619 40.909 0.00 0.00 0.00 1.85
784 2403 4.591321 ATCAGCCCTTTGGATCAACTTA 57.409 40.909 0.00 0.00 0.00 2.24
785 2404 2.978156 TCAGCCCTTTGGATCAACTT 57.022 45.000 0.00 0.00 0.00 2.66
789 2408 3.245371 ACTCAAATCAGCCCTTTGGATCA 60.245 43.478 0.00 0.00 34.95 2.92
793 2412 2.242043 ACACTCAAATCAGCCCTTTGG 58.758 47.619 4.11 0.00 34.95 3.28
813 2432 1.885233 TCGCATCTGCCATGTTGAAAA 59.115 42.857 0.00 0.00 37.91 2.29
834 2459 0.948623 TCAAGATGTGCGTCCGTTGG 60.949 55.000 0.00 0.00 0.00 3.77
1199 2830 3.365265 CCTCGTTTGCCCAGCACC 61.365 66.667 0.00 0.00 38.71 5.01
1906 3801 2.878406 GCTTGCGTATCATGGGTTACAT 59.122 45.455 0.00 0.00 41.57 2.29
1950 3845 9.410556 GCATAACAGTTACAAGATCAAACAATT 57.589 29.630 0.00 0.00 0.00 2.32
2066 3962 6.537453 TTCTGGAAACCAAGTTCATTTGAA 57.463 33.333 0.00 0.00 30.80 2.69
2320 4225 6.029346 AGTTTCATCCCAAATGTCATCAAC 57.971 37.500 0.00 0.00 0.00 3.18
3815 5850 6.538021 CACCTCAAATCTAAGATCAAGGTCTG 59.462 42.308 0.00 0.00 33.71 3.51
3832 5867 6.947733 ACAATATCATCTTCCAACACCTCAAA 59.052 34.615 0.00 0.00 0.00 2.69
4271 6320 2.125512 CTGGCCGAACTTCCTCCG 60.126 66.667 0.00 0.00 0.00 4.63
4309 6358 1.468914 GCCTTTGCTAACCTTCGGAAG 59.531 52.381 10.82 10.82 33.53 3.46
4379 6428 5.046663 AGTTCCAAGACAACAAAAACATGGT 60.047 36.000 0.00 0.00 0.00 3.55
4543 6613 2.909965 GGTTGTGGCAGCGGGAAA 60.910 61.111 0.00 0.00 0.00 3.13
4558 6628 4.344679 TCAACAATTTCTTCATTGCCAGGT 59.655 37.500 0.00 0.00 37.63 4.00
4738 6808 4.312443 AGCAAGGAAGCAAATGACAAATG 58.688 39.130 0.00 0.00 36.85 2.32
4739 6809 4.612264 AGCAAGGAAGCAAATGACAAAT 57.388 36.364 0.00 0.00 36.85 2.32
4857 6928 4.506625 GGCAACTATATATGTTCAGCCCCA 60.507 45.833 12.99 0.00 33.22 4.96
4886 6957 0.398318 AACTGAAGAGACACCCTGCC 59.602 55.000 0.00 0.00 0.00 4.85
4894 6965 7.873505 ACTGTACTGGAAATTAACTGAAGAGAC 59.126 37.037 4.66 0.00 0.00 3.36
4904 6977 9.173021 CCATCACATTACTGTACTGGAAATTAA 57.827 33.333 9.56 0.00 37.91 1.40
4907 6980 6.823689 GTCCATCACATTACTGTACTGGAAAT 59.176 38.462 14.01 0.00 42.35 2.17
4916 6989 4.225942 ACCATCAGTCCATCACATTACTGT 59.774 41.667 0.00 0.00 40.18 3.55
4926 6999 3.340814 AAGTCACACCATCAGTCCATC 57.659 47.619 0.00 0.00 0.00 3.51
4933 7006 6.150976 CAGGCTTAAATAAAGTCACACCATCA 59.849 38.462 0.00 0.00 42.62 3.07
4941 7014 7.065324 CGGTCATAACAGGCTTAAATAAAGTCA 59.935 37.037 0.00 0.00 42.62 3.41
4942 7015 7.407337 CGGTCATAACAGGCTTAAATAAAGTC 58.593 38.462 0.00 0.00 40.32 3.01
4945 7018 6.687081 CCGGTCATAACAGGCTTAAATAAA 57.313 37.500 0.00 0.00 33.85 1.40
4955 7028 3.329386 CTGATATGCCGGTCATAACAGG 58.671 50.000 28.48 18.71 46.39 4.00
4957 7030 2.038426 CCCTGATATGCCGGTCATAACA 59.962 50.000 19.76 19.76 40.73 2.41
4958 7031 2.615493 CCCCTGATATGCCGGTCATAAC 60.615 54.545 18.34 16.44 40.73 1.89
4959 7032 1.628340 CCCCTGATATGCCGGTCATAA 59.372 52.381 18.34 6.45 40.73 1.90
4960 7033 1.275666 CCCCTGATATGCCGGTCATA 58.724 55.000 17.22 17.22 41.52 2.15
4961 7034 2.069776 CCCCTGATATGCCGGTCAT 58.930 57.895 14.43 14.43 39.17 3.06
4962 7035 2.818169 GCCCCTGATATGCCGGTCA 61.818 63.158 1.90 1.38 0.00 4.02
4963 7036 2.032681 GCCCCTGATATGCCGGTC 59.967 66.667 1.90 0.00 0.00 4.79
4964 7037 0.766674 TAAGCCCCTGATATGCCGGT 60.767 55.000 1.90 0.00 0.00 5.28
4965 7038 0.036010 CTAAGCCCCTGATATGCCGG 60.036 60.000 0.00 0.00 0.00 6.13
4966 7039 0.674895 GCTAAGCCCCTGATATGCCG 60.675 60.000 0.00 0.00 0.00 5.69
4967 7040 0.322906 GGCTAAGCCCCTGATATGCC 60.323 60.000 0.00 0.00 44.06 4.40
4968 7041 3.256281 GGCTAAGCCCCTGATATGC 57.744 57.895 0.00 0.00 44.06 3.14
4979 7052 2.508526 CCATAATCCACTGGGCTAAGC 58.491 52.381 0.00 0.00 0.00 3.09
4980 7053 2.508526 GCCATAATCCACTGGGCTAAG 58.491 52.381 0.00 0.00 41.39 2.18
4981 7054 2.656947 GCCATAATCCACTGGGCTAA 57.343 50.000 0.00 0.00 41.39 3.09
4985 7058 0.261402 TTGGGCCATAATCCACTGGG 59.739 55.000 7.26 0.00 32.90 4.45
4986 7059 1.063717 ACTTGGGCCATAATCCACTGG 60.064 52.381 7.26 0.00 35.53 4.00
4987 7060 2.442236 ACTTGGGCCATAATCCACTG 57.558 50.000 7.26 0.00 32.00 3.66
4988 7061 4.416848 AGATAACTTGGGCCATAATCCACT 59.583 41.667 7.26 0.00 32.00 4.00
4989 7062 4.729868 AGATAACTTGGGCCATAATCCAC 58.270 43.478 7.26 0.00 32.00 4.02
4990 7063 5.402054 AAGATAACTTGGGCCATAATCCA 57.598 39.130 7.26 0.00 34.80 3.41
4991 7064 7.451566 ACAATAAGATAACTTGGGCCATAATCC 59.548 37.037 7.26 0.00 37.53 3.01
4992 7065 8.409358 ACAATAAGATAACTTGGGCCATAATC 57.591 34.615 7.26 8.37 37.53 1.75
4993 7066 8.782137 AACAATAAGATAACTTGGGCCATAAT 57.218 30.769 7.26 0.00 37.53 1.28
4994 7067 9.875708 ATAACAATAAGATAACTTGGGCCATAA 57.124 29.630 7.26 0.00 37.53 1.90
4995 7068 9.875708 AATAACAATAAGATAACTTGGGCCATA 57.124 29.630 7.26 0.00 37.53 2.74
4996 7069 8.782137 AATAACAATAAGATAACTTGGGCCAT 57.218 30.769 7.26 0.00 37.53 4.40
4997 7070 9.349713 CTAATAACAATAAGATAACTTGGGCCA 57.650 33.333 0.00 0.00 37.53 5.36
4998 7071 8.793592 CCTAATAACAATAAGATAACTTGGGCC 58.206 37.037 0.00 0.00 37.53 5.80
4999 7072 9.569122 TCCTAATAACAATAAGATAACTTGGGC 57.431 33.333 0.00 0.00 37.53 5.36
5008 7081 8.103935 GGGCTAAGCTCCTAATAACAATAAGAT 58.896 37.037 0.00 0.00 0.00 2.40
5009 7082 7.071950 TGGGCTAAGCTCCTAATAACAATAAGA 59.928 37.037 0.00 0.00 0.00 2.10
5010 7083 7.224297 TGGGCTAAGCTCCTAATAACAATAAG 58.776 38.462 0.00 0.00 0.00 1.73
5011 7084 7.144234 TGGGCTAAGCTCCTAATAACAATAA 57.856 36.000 0.00 0.00 0.00 1.40
5012 7085 6.757173 TGGGCTAAGCTCCTAATAACAATA 57.243 37.500 0.00 0.00 0.00 1.90
5013 7086 5.646692 TGGGCTAAGCTCCTAATAACAAT 57.353 39.130 0.00 0.00 0.00 2.71
5014 7087 5.444744 TTGGGCTAAGCTCCTAATAACAA 57.555 39.130 0.00 0.00 0.00 2.83
5015 7088 5.646692 ATTGGGCTAAGCTCCTAATAACA 57.353 39.130 0.26 0.00 33.73 2.41
5016 7089 8.103935 AGATAATTGGGCTAAGCTCCTAATAAC 58.896 37.037 2.48 0.00 34.28 1.89
5017 7090 8.219660 AGATAATTGGGCTAAGCTCCTAATAA 57.780 34.615 2.48 0.00 34.28 1.40
5018 7091 7.814693 AGATAATTGGGCTAAGCTCCTAATA 57.185 36.000 2.48 0.00 34.28 0.98
5019 7092 6.710499 AGATAATTGGGCTAAGCTCCTAAT 57.290 37.500 0.00 0.00 36.51 1.73
5020 7093 6.515512 AAGATAATTGGGCTAAGCTCCTAA 57.484 37.500 0.00 0.00 0.00 2.69
5021 7094 7.363880 CGATAAGATAATTGGGCTAAGCTCCTA 60.364 40.741 0.00 0.00 0.00 2.94
5022 7095 6.575254 CGATAAGATAATTGGGCTAAGCTCCT 60.575 42.308 0.00 0.00 0.00 3.69
5023 7096 5.582665 CGATAAGATAATTGGGCTAAGCTCC 59.417 44.000 0.00 0.00 0.00 4.70
5024 7097 6.166982 ACGATAAGATAATTGGGCTAAGCTC 58.833 40.000 0.00 0.00 0.00 4.09
5025 7098 6.115448 ACGATAAGATAATTGGGCTAAGCT 57.885 37.500 0.00 0.00 0.00 3.74
5026 7099 6.803154 AACGATAAGATAATTGGGCTAAGC 57.197 37.500 0.00 0.00 0.00 3.09
5030 7103 8.822805 TCCTAATAACGATAAGATAATTGGGCT 58.177 33.333 0.00 0.00 0.00 5.19
5031 7104 9.614792 ATCCTAATAACGATAAGATAATTGGGC 57.385 33.333 0.00 0.00 0.00 5.36
5044 7117 8.867097 TCCTAAGCAAACTATCCTAATAACGAT 58.133 33.333 0.00 0.00 0.00 3.73
5045 7118 8.241497 TCCTAAGCAAACTATCCTAATAACGA 57.759 34.615 0.00 0.00 0.00 3.85
5046 7119 8.522178 CTCCTAAGCAAACTATCCTAATAACG 57.478 38.462 0.00 0.00 0.00 3.18
5072 7145 1.741770 GCCCGGTTCTGCACTAGTG 60.742 63.158 18.93 18.93 0.00 2.74
5073 7146 0.613853 TAGCCCGGTTCTGCACTAGT 60.614 55.000 0.00 0.00 0.00 2.57
5074 7147 0.753262 ATAGCCCGGTTCTGCACTAG 59.247 55.000 0.00 0.00 0.00 2.57
5075 7148 1.961394 CTATAGCCCGGTTCTGCACTA 59.039 52.381 0.00 0.00 0.00 2.74
5076 7149 0.753262 CTATAGCCCGGTTCTGCACT 59.247 55.000 0.00 0.00 0.00 4.40
5077 7150 0.880718 GCTATAGCCCGGTTCTGCAC 60.881 60.000 14.13 0.00 34.31 4.57
5078 7151 1.334384 TGCTATAGCCCGGTTCTGCA 61.334 55.000 21.84 0.00 41.18 4.41
5079 7152 0.880718 GTGCTATAGCCCGGTTCTGC 60.881 60.000 21.84 0.00 41.18 4.26
5080 7153 0.249911 GGTGCTATAGCCCGGTTCTG 60.250 60.000 21.84 0.00 41.18 3.02
5081 7154 1.745320 CGGTGCTATAGCCCGGTTCT 61.745 60.000 31.12 0.00 44.99 3.01
5082 7155 1.300697 CGGTGCTATAGCCCGGTTC 60.301 63.158 31.12 13.98 44.99 3.62
5083 7156 2.819550 CGGTGCTATAGCCCGGTT 59.180 61.111 31.12 0.00 44.99 4.44
5086 7159 1.145377 AAACCGGTGCTATAGCCCG 59.855 57.895 31.50 31.50 46.81 6.13
5087 7160 0.107361 ACAAACCGGTGCTATAGCCC 60.107 55.000 21.84 19.43 41.18 5.19
5088 7161 2.607631 TACAAACCGGTGCTATAGCC 57.392 50.000 21.84 12.70 41.18 3.93
5089 7162 3.554731 GTCTTACAAACCGGTGCTATAGC 59.445 47.826 18.18 18.18 42.50 2.97
5090 7163 4.117685 GGTCTTACAAACCGGTGCTATAG 58.882 47.826 8.52 3.70 0.00 1.31
5091 7164 3.118665 GGGTCTTACAAACCGGTGCTATA 60.119 47.826 8.52 0.00 37.69 1.31
5092 7165 2.355412 GGGTCTTACAAACCGGTGCTAT 60.355 50.000 8.52 0.00 37.69 2.97
5093 7166 1.002315 GGGTCTTACAAACCGGTGCTA 59.998 52.381 8.52 0.00 37.69 3.49
5094 7167 0.250597 GGGTCTTACAAACCGGTGCT 60.251 55.000 8.52 0.00 37.69 4.40
5095 7168 0.250597 AGGGTCTTACAAACCGGTGC 60.251 55.000 8.52 0.00 37.69 5.01
5096 7169 2.265589 AAGGGTCTTACAAACCGGTG 57.734 50.000 8.52 0.00 37.69 4.94
5097 7170 3.392285 ACTAAAGGGTCTTACAAACCGGT 59.608 43.478 0.00 0.00 37.69 5.28
5098 7171 3.749609 CACTAAAGGGTCTTACAAACCGG 59.250 47.826 0.00 0.00 37.69 5.28
5099 7172 3.187842 GCACTAAAGGGTCTTACAAACCG 59.812 47.826 0.00 0.00 37.69 4.44
5100 7173 3.504906 GGCACTAAAGGGTCTTACAAACC 59.495 47.826 0.00 0.00 35.97 3.27
5101 7174 3.187842 CGGCACTAAAGGGTCTTACAAAC 59.812 47.826 0.00 0.00 0.00 2.93
5102 7175 3.404899 CGGCACTAAAGGGTCTTACAAA 58.595 45.455 0.00 0.00 0.00 2.83
5103 7176 2.289819 CCGGCACTAAAGGGTCTTACAA 60.290 50.000 0.00 0.00 0.00 2.41
5104 7177 1.276989 CCGGCACTAAAGGGTCTTACA 59.723 52.381 0.00 0.00 0.00 2.41
5105 7178 1.277273 ACCGGCACTAAAGGGTCTTAC 59.723 52.381 0.00 0.00 0.00 2.34
5106 7179 1.648116 ACCGGCACTAAAGGGTCTTA 58.352 50.000 0.00 0.00 0.00 2.10
5107 7180 0.769247 AACCGGCACTAAAGGGTCTT 59.231 50.000 0.00 0.00 30.99 3.01
5108 7181 0.323957 GAACCGGCACTAAAGGGTCT 59.676 55.000 0.00 0.00 38.65 3.85
5109 7182 0.035739 TGAACCGGCACTAAAGGGTC 59.964 55.000 0.00 0.00 41.92 4.46
5110 7183 0.036306 CTGAACCGGCACTAAAGGGT 59.964 55.000 0.00 0.00 0.00 4.34
5111 7184 0.036306 ACTGAACCGGCACTAAAGGG 59.964 55.000 0.00 0.00 0.00 3.95
5112 7185 2.740447 GTTACTGAACCGGCACTAAAGG 59.260 50.000 0.00 0.00 0.00 3.11
5113 7186 2.740447 GGTTACTGAACCGGCACTAAAG 59.260 50.000 0.00 0.00 45.73 1.85
5114 7187 2.769893 GGTTACTGAACCGGCACTAAA 58.230 47.619 0.00 0.00 45.73 1.85
5115 7188 2.460757 GGTTACTGAACCGGCACTAA 57.539 50.000 0.00 0.00 45.73 2.24
5123 7196 5.853552 CACTTTAGTGCCGGTTACTGAACC 61.854 50.000 19.64 0.00 44.16 3.62
5124 7197 3.185797 CACTTTAGTGCCGGTTACTGAAC 59.814 47.826 19.64 1.75 39.39 3.18
5125 7198 3.395639 CACTTTAGTGCCGGTTACTGAA 58.604 45.455 19.64 16.81 39.39 3.02
5126 7199 3.034721 CACTTTAGTGCCGGTTACTGA 57.965 47.619 19.64 11.38 39.39 3.41
5137 7210 6.029729 GACCTTTAGTCCCCACACTTTAGTG 61.030 48.000 8.29 8.29 44.47 2.74
5138 7211 3.978672 ACCTTTAGTCCCCACACTTTAGT 59.021 43.478 0.00 0.00 0.00 2.24
5139 7212 4.576879 GACCTTTAGTCCCCACACTTTAG 58.423 47.826 0.00 0.00 39.84 1.85
5140 7213 4.628963 GACCTTTAGTCCCCACACTTTA 57.371 45.455 0.00 0.00 39.84 1.85
5141 7214 3.503800 GACCTTTAGTCCCCACACTTT 57.496 47.619 0.00 0.00 39.84 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.