Multiple sequence alignment - TraesCS3A01G031900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G031900 chr3A 100.000 2411 0 0 1 2411 17495121 17492711 0.000000e+00 4453.0
1 TraesCS3A01G031900 chr3A 97.981 1436 26 2 899 2333 599892295 599890862 0.000000e+00 2488.0
2 TraesCS3A01G031900 chr3A 97.708 1440 28 2 895 2333 340259418 340260853 0.000000e+00 2471.0
3 TraesCS3A01G031900 chr3A 97.059 34 1 0 595 628 17898590 17898623 9.310000e-05 58.4
4 TraesCS3A01G031900 chr6A 97.910 957 19 1 895 1850 60606705 60605749 0.000000e+00 1655.0
5 TraesCS3A01G031900 chr6A 85.127 511 41 14 1847 2333 195274993 195274494 7.750000e-135 490.0
6 TraesCS3A01G031900 chr6A 90.751 173 11 3 422 590 191222141 191222312 2.410000e-55 226.0
7 TraesCS3A01G031900 chr6A 97.368 38 1 0 1813 1850 195277384 195277347 5.560000e-07 65.8
8 TraesCS3A01G031900 chr1A 96.134 957 36 1 895 1850 494701476 494700520 0.000000e+00 1561.0
9 TraesCS3A01G031900 chr1A 91.601 893 70 3 900 1787 152714402 152713510 0.000000e+00 1229.0
10 TraesCS3A01G031900 chr1A 95.890 438 12 1 1902 2333 152703604 152703167 0.000000e+00 704.0
11 TraesCS3A01G031900 chr1A 97.368 76 2 0 1847 1922 152703680 152703605 1.950000e-26 130.0
12 TraesCS3A01G031900 chr3B 94.855 894 41 2 895 1787 499928084 499927195 0.000000e+00 1391.0
13 TraesCS3A01G031900 chr3B 91.471 680 44 10 1 673 15056139 15056811 0.000000e+00 922.0
14 TraesCS3A01G031900 chr3B 97.963 491 8 1 1847 2335 499924821 499924331 0.000000e+00 850.0
15 TraesCS3A01G031900 chr3B 87.586 435 39 8 1902 2335 815446608 815447028 7.750000e-135 490.0
16 TraesCS3A01G031900 chr3B 83.128 486 82 0 901 1386 815401446 815401931 6.120000e-121 444.0
17 TraesCS3A01G031900 chr3B 94.595 74 4 0 1777 1850 499927096 499927023 5.450000e-22 115.0
18 TraesCS3A01G031900 chr5A 97.723 527 12 0 895 1421 536905160 536905686 0.000000e+00 907.0
19 TraesCS3A01G031900 chr7B 87.097 434 38 12 1904 2333 619083181 619083600 2.170000e-130 475.0
20 TraesCS3A01G031900 chr3D 90.000 370 23 7 395 756 10725736 10726099 1.310000e-127 466.0
21 TraesCS3A01G031900 chr3D 92.000 175 11 2 419 590 527504395 527504569 2.390000e-60 243.0
22 TraesCS3A01G031900 chr3D 91.597 119 10 0 26 144 10725302 10725420 5.330000e-37 165.0
23 TraesCS3A01G031900 chr3D 89.333 75 8 0 2337 2411 10907956 10907882 7.100000e-16 95.3
24 TraesCS3A01G031900 chr3D 97.059 34 1 0 595 628 10910433 10910400 9.310000e-05 58.4
25 TraesCS3A01G031900 chr3D 100.000 28 0 0 1785 1812 147502600 147502573 4.000000e-03 52.8
26 TraesCS3A01G031900 chr2B 86.605 433 41 10 1902 2333 381501573 381501989 1.690000e-126 462.0
27 TraesCS3A01G031900 chr6B 85.945 434 42 9 1902 2333 274391798 274392214 1.700000e-121 446.0
28 TraesCS3A01G031900 chr6B 80.239 587 75 20 901 1459 274388754 274389327 1.040000e-108 403.0
29 TraesCS3A01G031900 chr6B 88.679 53 6 0 1844 1896 274391719 274391771 5.560000e-07 65.8
30 TraesCS3A01G031900 chr6B 100.000 33 0 0 1818 1850 274389329 274389361 7.200000e-06 62.1
31 TraesCS3A01G031900 chr6D 82.803 314 21 10 1847 2141 149888444 149888743 1.430000e-62 250.0
32 TraesCS3A01G031900 chr4D 92.486 173 10 2 425 594 498765800 498765972 6.660000e-61 244.0
33 TraesCS3A01G031900 chr4D 100.000 28 0 0 1785 1812 480473798 480473771 4.000000e-03 52.8
34 TraesCS3A01G031900 chr7D 92.899 169 9 2 425 590 528035138 528035306 2.390000e-60 243.0
35 TraesCS3A01G031900 chr4B 92.216 167 11 2 425 590 147754750 147754585 4.010000e-58 235.0
36 TraesCS3A01G031900 chr4B 100.000 28 0 0 1785 1812 298154958 298154931 4.000000e-03 52.8
37 TraesCS3A01G031900 chr7A 90.286 175 13 3 419 590 127829425 127829598 2.410000e-55 226.0
38 TraesCS3A01G031900 chr5B 89.503 181 14 3 425 601 232213909 232213730 8.670000e-55 224.0
39 TraesCS3A01G031900 chr5D 75.102 490 67 27 1872 2333 491788182 491787720 6.850000e-41 178.0
40 TraesCS3A01G031900 chr1D 100.000 28 0 0 1785 1812 390073526 390073553 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G031900 chr3A 17492711 17495121 2410 True 4453.000000 4453 100.000000 1 2411 1 chr3A.!!$R1 2410
1 TraesCS3A01G031900 chr3A 599890862 599892295 1433 True 2488.000000 2488 97.981000 899 2333 1 chr3A.!!$R2 1434
2 TraesCS3A01G031900 chr3A 340259418 340260853 1435 False 2471.000000 2471 97.708000 895 2333 1 chr3A.!!$F2 1438
3 TraesCS3A01G031900 chr6A 60605749 60606705 956 True 1655.000000 1655 97.910000 895 1850 1 chr6A.!!$R1 955
4 TraesCS3A01G031900 chr6A 195274494 195277384 2890 True 277.900000 490 91.247500 1813 2333 2 chr6A.!!$R2 520
5 TraesCS3A01G031900 chr1A 494700520 494701476 956 True 1561.000000 1561 96.134000 895 1850 1 chr1A.!!$R2 955
6 TraesCS3A01G031900 chr1A 152713510 152714402 892 True 1229.000000 1229 91.601000 900 1787 1 chr1A.!!$R1 887
7 TraesCS3A01G031900 chr1A 152703167 152703680 513 True 417.000000 704 96.629000 1847 2333 2 chr1A.!!$R3 486
8 TraesCS3A01G031900 chr3B 15056139 15056811 672 False 922.000000 922 91.471000 1 673 1 chr3B.!!$F1 672
9 TraesCS3A01G031900 chr3B 499924331 499928084 3753 True 785.333333 1391 95.804333 895 2335 3 chr3B.!!$R1 1440
10 TraesCS3A01G031900 chr5A 536905160 536905686 526 False 907.000000 907 97.723000 895 1421 1 chr5A.!!$F1 526
11 TraesCS3A01G031900 chr3D 10725302 10726099 797 False 315.500000 466 90.798500 26 756 2 chr3D.!!$F2 730
12 TraesCS3A01G031900 chr6B 274388754 274392214 3460 False 244.225000 446 88.715750 901 2333 4 chr6B.!!$F1 1432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 930 0.033504 ACCGCGTGCCCATCTATAAG 59.966 55.0 4.92 0.0 0.0 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2336 7253 0.177141 GGCACCTCGGCTTACATGTA 59.823 55.0 0.08 0.08 37.17 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.868415 GGTAGCAATAAAAGTATCAGAGATCGT 59.132 37.037 0.00 0.00 0.00 3.73
186 219 6.564328 GTCTTTTGAGTTGTTGAACTTGGAT 58.436 36.000 0.00 0.00 42.80 3.41
193 226 7.732025 TGAGTTGTTGAACTTGGATAGTCTAA 58.268 34.615 0.00 0.00 42.80 2.10
194 227 7.872993 TGAGTTGTTGAACTTGGATAGTCTAAG 59.127 37.037 0.00 2.08 42.80 2.18
230 267 4.318332 TGAGGTGATAACTTTGCTGAGTG 58.682 43.478 0.00 0.00 0.00 3.51
239 276 3.070018 ACTTTGCTGAGTGGAAGATTCG 58.930 45.455 0.00 0.00 0.00 3.34
264 301 4.830912 CAGCTTATTCTGCGAATTCTGTC 58.169 43.478 3.52 0.00 35.28 3.51
272 309 5.268118 TCTGCGAATTCTGTCTCATGTAT 57.732 39.130 3.52 0.00 0.00 2.29
285 322 8.940952 TCTGTCTCATGTATATCTATTGTCGAG 58.059 37.037 0.00 0.00 0.00 4.04
397 471 7.287696 TCACACTGACCATGTACACATATCTAT 59.712 37.037 0.00 0.00 34.26 1.98
427 501 5.529800 AGTGTCCAGTTTTTAATTACAGCGT 59.470 36.000 0.00 0.00 0.00 5.07
433 507 6.304683 CCAGTTTTTAATTACAGCGTTGCTAC 59.695 38.462 0.00 0.00 36.40 3.58
465 539 1.145598 CAGCAGCCGACTCATGGAT 59.854 57.895 0.00 0.00 0.00 3.41
466 540 0.463295 CAGCAGCCGACTCATGGATT 60.463 55.000 0.00 0.00 0.00 3.01
587 666 4.641954 CTGTATCGTGTGTGAAGCAATTC 58.358 43.478 0.00 0.00 0.00 2.17
664 744 8.475639 AGAGAAAATACTAATAAGCCGAGTTCA 58.524 33.333 0.00 0.00 0.00 3.18
673 753 1.301716 GCCGAGTTCAGTGAAGGCA 60.302 57.895 23.08 0.00 43.65 4.75
684 764 6.775629 AGTTCAGTGAAGGCATTTTTAACCTA 59.224 34.615 5.62 0.00 32.08 3.08
708 788 3.616560 GCTACTAAGCTAAGTGTGGCACA 60.617 47.826 17.96 17.96 45.85 4.57
723 807 3.997762 TGGCACACGACTTAGTATGTTT 58.002 40.909 0.00 0.00 0.00 2.83
741 825 3.275999 GTTTGGCTTACATCATACCGGT 58.724 45.455 13.98 13.98 0.00 5.28
743 827 4.967084 TTGGCTTACATCATACCGGTAT 57.033 40.909 21.72 21.72 0.00 2.73
756 840 5.542635 TCATACCGGTATTTCAGGATAAGCT 59.457 40.000 24.71 0.00 35.40 3.74
757 841 4.073293 ACCGGTATTTCAGGATAAGCTG 57.927 45.455 4.49 0.00 35.40 4.24
758 842 3.709653 ACCGGTATTTCAGGATAAGCTGA 59.290 43.478 4.49 0.00 35.40 4.26
759 843 4.202264 ACCGGTATTTCAGGATAAGCTGAG 60.202 45.833 4.49 0.00 35.40 3.35
760 844 4.039245 CCGGTATTTCAGGATAAGCTGAGA 59.961 45.833 0.00 0.00 33.18 3.27
761 845 5.453339 CCGGTATTTCAGGATAAGCTGAGAA 60.453 44.000 0.00 0.00 33.18 2.87
762 846 5.463724 CGGTATTTCAGGATAAGCTGAGAAC 59.536 44.000 0.00 0.00 0.00 3.01
763 847 5.760743 GGTATTTCAGGATAAGCTGAGAACC 59.239 44.000 0.00 0.00 0.00 3.62
764 848 5.707066 ATTTCAGGATAAGCTGAGAACCT 57.293 39.130 0.00 0.00 0.00 3.50
765 849 4.478206 TTCAGGATAAGCTGAGAACCTG 57.522 45.455 12.83 12.83 44.02 4.00
766 850 2.169352 TCAGGATAAGCTGAGAACCTGC 59.831 50.000 13.76 0.00 42.86 4.85
767 851 1.137872 AGGATAAGCTGAGAACCTGCG 59.862 52.381 0.00 0.00 43.49 5.18
768 852 1.134670 GGATAAGCTGAGAACCTGCGT 60.135 52.381 0.00 0.00 43.49 5.24
769 853 2.197577 GATAAGCTGAGAACCTGCGTC 58.802 52.381 0.00 0.00 43.49 5.19
770 854 0.246635 TAAGCTGAGAACCTGCGTCC 59.753 55.000 0.00 0.00 43.49 4.79
771 855 1.758440 AAGCTGAGAACCTGCGTCCA 61.758 55.000 0.00 0.00 43.49 4.02
772 856 1.078848 GCTGAGAACCTGCGTCCAT 60.079 57.895 0.00 0.00 0.00 3.41
773 857 1.364626 GCTGAGAACCTGCGTCCATG 61.365 60.000 0.00 0.00 0.00 3.66
774 858 1.364626 CTGAGAACCTGCGTCCATGC 61.365 60.000 0.00 0.00 0.00 4.06
775 859 1.375908 GAGAACCTGCGTCCATGCA 60.376 57.895 0.00 0.00 43.95 3.96
776 860 0.745845 GAGAACCTGCGTCCATGCAT 60.746 55.000 0.00 0.00 45.26 3.96
777 861 1.028330 AGAACCTGCGTCCATGCATG 61.028 55.000 20.19 20.19 45.26 4.06
790 874 4.311816 CCATGCATGGCTTAAAAGTAGG 57.688 45.455 31.95 4.56 41.75 3.18
791 875 3.701040 CCATGCATGGCTTAAAAGTAGGT 59.299 43.478 31.95 0.00 41.75 3.08
792 876 4.202050 CCATGCATGGCTTAAAAGTAGGTC 60.202 45.833 31.95 0.00 41.75 3.85
793 877 3.006940 TGCATGGCTTAAAAGTAGGTCG 58.993 45.455 0.00 0.00 0.00 4.79
794 878 3.007635 GCATGGCTTAAAAGTAGGTCGT 58.992 45.455 0.00 0.00 0.00 4.34
795 879 3.181510 GCATGGCTTAAAAGTAGGTCGTG 60.182 47.826 0.00 0.00 32.52 4.35
796 880 2.419667 TGGCTTAAAAGTAGGTCGTGC 58.580 47.619 0.00 0.00 0.00 5.34
797 881 1.736126 GGCTTAAAAGTAGGTCGTGCC 59.264 52.381 0.00 0.00 37.58 5.01
798 882 1.736126 GCTTAAAAGTAGGTCGTGCCC 59.264 52.381 0.00 0.00 38.26 5.36
799 883 2.614734 GCTTAAAAGTAGGTCGTGCCCT 60.615 50.000 0.00 0.00 38.26 5.19
800 884 2.754946 TAAAAGTAGGTCGTGCCCTG 57.245 50.000 0.00 0.00 38.26 4.45
801 885 0.605589 AAAAGTAGGTCGTGCCCTGC 60.606 55.000 0.00 0.00 37.48 4.85
802 886 2.283966 AGTAGGTCGTGCCCTGCT 60.284 61.111 4.02 4.02 42.05 4.24
803 887 1.889530 AAGTAGGTCGTGCCCTGCTC 61.890 60.000 8.87 0.00 45.55 4.26
804 888 3.449227 TAGGTCGTGCCCTGCTCG 61.449 66.667 4.34 4.34 45.04 5.03
812 896 4.242602 GCCCTGCTCGGCTTTATT 57.757 55.556 7.31 0.00 46.10 1.40
813 897 2.493547 GCCCTGCTCGGCTTTATTT 58.506 52.632 7.31 0.00 46.10 1.40
814 898 0.382158 GCCCTGCTCGGCTTTATTTC 59.618 55.000 7.31 0.00 46.10 2.17
815 899 1.025041 CCCTGCTCGGCTTTATTTCC 58.975 55.000 0.00 0.00 0.00 3.13
816 900 1.025041 CCTGCTCGGCTTTATTTCCC 58.975 55.000 0.00 0.00 0.00 3.97
817 901 1.681780 CCTGCTCGGCTTTATTTCCCA 60.682 52.381 0.00 0.00 0.00 4.37
818 902 1.401905 CTGCTCGGCTTTATTTCCCAC 59.598 52.381 0.00 0.00 0.00 4.61
819 903 0.738975 GCTCGGCTTTATTTCCCACC 59.261 55.000 0.00 0.00 0.00 4.61
820 904 1.389555 CTCGGCTTTATTTCCCACCC 58.610 55.000 0.00 0.00 0.00 4.61
821 905 0.393267 TCGGCTTTATTTCCCACCCG 60.393 55.000 0.00 0.00 35.83 5.28
822 906 0.393267 CGGCTTTATTTCCCACCCGA 60.393 55.000 0.00 0.00 36.55 5.14
823 907 1.842052 GGCTTTATTTCCCACCCGAA 58.158 50.000 0.00 0.00 0.00 4.30
824 908 1.749063 GGCTTTATTTCCCACCCGAAG 59.251 52.381 0.00 0.00 0.00 3.79
825 909 1.134367 GCTTTATTTCCCACCCGAAGC 59.866 52.381 0.00 0.00 0.00 3.86
826 910 2.442413 CTTTATTTCCCACCCGAAGCA 58.558 47.619 0.00 0.00 0.00 3.91
827 911 2.588464 TTATTTCCCACCCGAAGCAA 57.412 45.000 0.00 0.00 0.00 3.91
828 912 1.828979 TATTTCCCACCCGAAGCAAC 58.171 50.000 0.00 0.00 0.00 4.17
829 913 0.898326 ATTTCCCACCCGAAGCAACC 60.898 55.000 0.00 0.00 0.00 3.77
830 914 3.835790 TTCCCACCCGAAGCAACCG 62.836 63.158 0.00 0.00 0.00 4.44
842 926 2.125310 CAACCGCGTGCCCATCTA 60.125 61.111 4.92 0.00 0.00 1.98
843 927 1.523711 CAACCGCGTGCCCATCTAT 60.524 57.895 4.92 0.00 0.00 1.98
844 928 0.249699 CAACCGCGTGCCCATCTATA 60.250 55.000 4.92 0.00 0.00 1.31
845 929 0.466543 AACCGCGTGCCCATCTATAA 59.533 50.000 4.92 0.00 0.00 0.98
846 930 0.033504 ACCGCGTGCCCATCTATAAG 59.966 55.000 4.92 0.00 0.00 1.73
847 931 0.317160 CCGCGTGCCCATCTATAAGA 59.683 55.000 4.92 0.00 0.00 2.10
848 932 1.066858 CCGCGTGCCCATCTATAAGAT 60.067 52.381 4.92 0.00 34.74 2.40
872 956 1.334054 GTGTTAGTACACGAGCACGG 58.666 55.000 8.74 0.00 44.66 4.94
873 957 0.387622 TGTTAGTACACGAGCACGGC 60.388 55.000 8.74 0.00 44.46 5.68
874 958 0.109412 GTTAGTACACGAGCACGGCT 60.109 55.000 8.74 0.00 43.88 5.52
875 959 0.599558 TTAGTACACGAGCACGGCTT 59.400 50.000 8.74 0.00 39.88 4.35
876 960 1.452110 TAGTACACGAGCACGGCTTA 58.548 50.000 8.74 0.00 39.88 3.09
877 961 0.815734 AGTACACGAGCACGGCTTAT 59.184 50.000 8.74 0.00 39.88 1.73
878 962 2.019249 AGTACACGAGCACGGCTTATA 58.981 47.619 8.74 0.00 39.88 0.98
879 963 2.621998 AGTACACGAGCACGGCTTATAT 59.378 45.455 8.74 0.00 39.88 0.86
880 964 2.135664 ACACGAGCACGGCTTATATC 57.864 50.000 8.74 0.00 39.88 1.63
881 965 1.681793 ACACGAGCACGGCTTATATCT 59.318 47.619 8.74 0.00 39.88 1.98
882 966 2.882761 ACACGAGCACGGCTTATATCTA 59.117 45.455 8.74 0.00 39.88 1.98
883 967 3.317149 ACACGAGCACGGCTTATATCTAA 59.683 43.478 8.74 0.00 39.88 2.10
884 968 3.669122 CACGAGCACGGCTTATATCTAAC 59.331 47.826 8.74 0.00 39.88 2.34
885 969 3.243336 CGAGCACGGCTTATATCTAACC 58.757 50.000 0.00 0.00 39.88 2.85
886 970 3.586892 GAGCACGGCTTATATCTAACCC 58.413 50.000 0.00 0.00 39.88 4.11
887 971 3.240302 AGCACGGCTTATATCTAACCCT 58.760 45.455 0.00 0.00 33.89 4.34
888 972 3.646637 AGCACGGCTTATATCTAACCCTT 59.353 43.478 0.00 0.00 33.89 3.95
889 973 4.836736 AGCACGGCTTATATCTAACCCTTA 59.163 41.667 0.00 0.00 33.89 2.69
890 974 5.484290 AGCACGGCTTATATCTAACCCTTAT 59.516 40.000 0.00 0.00 33.89 1.73
891 975 6.666546 AGCACGGCTTATATCTAACCCTTATA 59.333 38.462 0.00 0.00 33.89 0.98
892 976 6.755607 GCACGGCTTATATCTAACCCTTATAC 59.244 42.308 0.00 0.00 0.00 1.47
893 977 7.578189 GCACGGCTTATATCTAACCCTTATACA 60.578 40.741 0.00 0.00 0.00 2.29
910 994 7.989741 CCCTTATACAATCACAGAGAGTCAATT 59.010 37.037 0.00 0.00 0.00 2.32
923 1007 6.825213 CAGAGAGTCAATTATCCAATCCAACA 59.175 38.462 0.00 0.00 0.00 3.33
970 1054 0.955919 GCAGCCGGTCCATATAAGCC 60.956 60.000 1.90 0.00 0.00 4.35
1050 1161 2.282745 GGCCAGCAAGTCAAGGCT 60.283 61.111 0.00 0.00 46.23 4.58
1376 1487 4.954118 TGGGGCTGACCAGGACGT 62.954 66.667 0.00 0.00 42.91 4.34
1651 1765 4.036852 GCAATCTTATCAAGTAGGTTGGCC 59.963 45.833 0.00 0.00 36.71 5.36
1725 1842 8.655092 ACAATTTTCGGTTGCATAATTTGTATG 58.345 29.630 0.00 0.00 0.00 2.39
1751 1868 3.319755 TGACGAACGAACAATAAGTCCC 58.680 45.455 0.14 0.00 0.00 4.46
1994 6904 0.107017 GATGGCCATGGCTAGTGTGT 60.107 55.000 34.70 15.00 41.60 3.72
1995 6905 0.394762 ATGGCCATGGCTAGTGTGTG 60.395 55.000 34.70 0.00 41.60 3.82
1996 6906 1.002134 GGCCATGGCTAGTGTGTGT 60.002 57.895 34.70 0.00 41.60 3.72
1997 6907 1.308069 GGCCATGGCTAGTGTGTGTG 61.308 60.000 34.70 0.00 41.60 3.82
2335 7252 2.274760 CGGACGGAGGGAGTAGGT 59.725 66.667 0.00 0.00 0.00 3.08
2336 7253 1.379576 CGGACGGAGGGAGTAGGTT 60.380 63.158 0.00 0.00 0.00 3.50
2337 7254 0.107017 CGGACGGAGGGAGTAGGTTA 60.107 60.000 0.00 0.00 0.00 2.85
2338 7255 1.397672 GGACGGAGGGAGTAGGTTAC 58.602 60.000 0.00 0.00 0.00 2.50
2339 7256 1.341383 GGACGGAGGGAGTAGGTTACA 60.341 57.143 0.00 0.00 0.00 2.41
2340 7257 2.664015 GACGGAGGGAGTAGGTTACAT 58.336 52.381 0.00 0.00 0.00 2.29
2341 7258 2.361438 GACGGAGGGAGTAGGTTACATG 59.639 54.545 0.00 0.00 0.00 3.21
2342 7259 2.292061 ACGGAGGGAGTAGGTTACATGT 60.292 50.000 2.69 2.69 0.00 3.21
2343 7260 3.053395 ACGGAGGGAGTAGGTTACATGTA 60.053 47.826 0.08 0.08 0.00 2.29
2344 7261 3.956199 CGGAGGGAGTAGGTTACATGTAA 59.044 47.826 14.35 14.35 0.00 2.41
2345 7262 4.037684 CGGAGGGAGTAGGTTACATGTAAG 59.962 50.000 18.56 0.00 0.00 2.34
2346 7263 4.202233 GGAGGGAGTAGGTTACATGTAAGC 60.202 50.000 31.21 31.21 42.17 3.09
2347 7264 3.710165 AGGGAGTAGGTTACATGTAAGCC 59.290 47.826 33.31 26.56 42.66 4.35
2348 7265 3.492137 GGGAGTAGGTTACATGTAAGCCG 60.492 52.174 33.31 0.00 42.66 5.52
2349 7266 3.382546 GGAGTAGGTTACATGTAAGCCGA 59.617 47.826 33.31 23.35 42.66 5.54
2350 7267 4.499357 GGAGTAGGTTACATGTAAGCCGAG 60.499 50.000 33.31 0.00 42.66 4.63
2351 7268 2.981859 AGGTTACATGTAAGCCGAGG 57.018 50.000 33.31 0.00 42.66 4.63
2352 7269 2.185387 AGGTTACATGTAAGCCGAGGT 58.815 47.619 33.31 18.57 42.66 3.85
2353 7270 2.093658 AGGTTACATGTAAGCCGAGGTG 60.094 50.000 33.31 0.00 42.66 4.00
2354 7271 1.664151 GTTACATGTAAGCCGAGGTGC 59.336 52.381 18.56 0.24 0.00 5.01
2355 7272 0.177141 TACATGTAAGCCGAGGTGCC 59.823 55.000 2.20 0.00 0.00 5.01
2356 7273 1.819632 CATGTAAGCCGAGGTGCCC 60.820 63.158 0.00 0.00 0.00 5.36
2357 7274 1.995626 ATGTAAGCCGAGGTGCCCT 60.996 57.895 0.00 0.00 36.03 5.19
2358 7275 1.972660 ATGTAAGCCGAGGTGCCCTC 61.973 60.000 10.35 10.35 46.44 4.30
2365 7282 3.701454 GAGGTGCCCTCTCGTCTT 58.299 61.111 12.53 0.00 46.41 3.01
2366 7283 1.513622 GAGGTGCCCTCTCGTCTTC 59.486 63.158 12.53 0.00 46.41 2.87
2367 7284 0.968393 GAGGTGCCCTCTCGTCTTCT 60.968 60.000 12.53 0.00 46.41 2.85
2368 7285 0.331954 AGGTGCCCTCTCGTCTTCTA 59.668 55.000 0.00 0.00 0.00 2.10
2369 7286 0.456628 GGTGCCCTCTCGTCTTCTAC 59.543 60.000 0.00 0.00 0.00 2.59
2370 7287 1.174783 GTGCCCTCTCGTCTTCTACA 58.825 55.000 0.00 0.00 0.00 2.74
2371 7288 1.751924 GTGCCCTCTCGTCTTCTACAT 59.248 52.381 0.00 0.00 0.00 2.29
2372 7289 1.751351 TGCCCTCTCGTCTTCTACATG 59.249 52.381 0.00 0.00 0.00 3.21
2373 7290 1.537135 GCCCTCTCGTCTTCTACATGC 60.537 57.143 0.00 0.00 0.00 4.06
2374 7291 1.751351 CCCTCTCGTCTTCTACATGCA 59.249 52.381 0.00 0.00 0.00 3.96
2375 7292 2.480416 CCCTCTCGTCTTCTACATGCAC 60.480 54.545 0.00 0.00 0.00 4.57
2376 7293 2.425312 CCTCTCGTCTTCTACATGCACT 59.575 50.000 0.00 0.00 0.00 4.40
2377 7294 3.433709 CTCTCGTCTTCTACATGCACTG 58.566 50.000 0.00 0.00 0.00 3.66
2378 7295 2.164422 TCTCGTCTTCTACATGCACTGG 59.836 50.000 0.00 0.00 0.00 4.00
2379 7296 1.002366 CGTCTTCTACATGCACTGGC 58.998 55.000 0.00 0.00 41.68 4.85
2392 7309 3.923017 GCACTGGCAATTCTGTTTAGT 57.077 42.857 0.00 0.00 40.72 2.24
2393 7310 3.826466 GCACTGGCAATTCTGTTTAGTC 58.174 45.455 0.00 0.00 40.72 2.59
2394 7311 3.253188 GCACTGGCAATTCTGTTTAGTCA 59.747 43.478 0.00 0.00 40.72 3.41
2395 7312 4.614535 GCACTGGCAATTCTGTTTAGTCAG 60.615 45.833 0.00 0.00 40.72 3.51
2396 7313 4.074970 ACTGGCAATTCTGTTTAGTCAGG 58.925 43.478 0.00 0.00 36.25 3.86
2397 7314 4.202461 ACTGGCAATTCTGTTTAGTCAGGA 60.202 41.667 0.00 0.00 36.25 3.86
2398 7315 4.724399 TGGCAATTCTGTTTAGTCAGGAA 58.276 39.130 0.00 0.00 36.25 3.36
2399 7316 4.518970 TGGCAATTCTGTTTAGTCAGGAAC 59.481 41.667 0.00 0.00 36.25 3.62
2400 7317 4.762251 GGCAATTCTGTTTAGTCAGGAACT 59.238 41.667 0.00 0.00 42.33 3.01
2401 7318 5.938125 GGCAATTCTGTTTAGTCAGGAACTA 59.062 40.000 0.00 0.00 39.55 2.24
2402 7319 6.430000 GGCAATTCTGTTTAGTCAGGAACTAA 59.570 38.462 0.00 0.00 46.41 2.24
2409 7326 4.924305 TTAGTCAGGAACTAACACGTGT 57.076 40.909 17.22 17.22 43.89 4.49
2410 7327 3.366440 AGTCAGGAACTAACACGTGTC 57.634 47.619 23.61 8.83 36.02 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.055588 TCTGATACTTTTATTGCTACCCTGC 58.944 40.000 0.00 0.00 0.00 4.85
34 35 8.780249 GGCTAAGGTAATTCGCATCTAATTTAA 58.220 33.333 0.00 0.00 31.33 1.52
36 37 6.770785 TGGCTAAGGTAATTCGCATCTAATTT 59.229 34.615 0.00 0.00 31.33 1.82
186 219 7.724506 CCTCATAACCAGATACCACTTAGACTA 59.275 40.741 0.00 0.00 0.00 2.59
193 226 4.620723 TCACCTCATAACCAGATACCACT 58.379 43.478 0.00 0.00 0.00 4.00
194 227 5.552870 ATCACCTCATAACCAGATACCAC 57.447 43.478 0.00 0.00 0.00 4.16
230 267 3.873952 AGAATAAGCTGCACGAATCTTCC 59.126 43.478 1.02 0.00 0.00 3.46
259 296 8.848474 TCGACAATAGATATACATGAGACAGA 57.152 34.615 0.00 0.00 0.00 3.41
260 297 7.696035 GCTCGACAATAGATATACATGAGACAG 59.304 40.741 0.00 0.00 0.00 3.51
261 298 7.362142 GGCTCGACAATAGATATACATGAGACA 60.362 40.741 0.00 0.00 0.00 3.41
264 301 7.094508 AGGCTCGACAATAGATATACATGAG 57.905 40.000 0.00 0.00 0.00 2.90
285 322 6.989169 CCATTCTGCCAGTATATAGAATAGGC 59.011 42.308 0.00 0.00 37.68 3.93
311 349 8.147058 ACTGGCTATCTTTTCATAGTATCACAG 58.853 37.037 0.00 0.00 0.00 3.66
364 402 4.207891 ACATGGTCAGTGTGATTCCTAC 57.792 45.455 0.00 0.00 0.00 3.18
416 490 4.150980 GTGTGTGTAGCAACGCTGTAATTA 59.849 41.667 0.00 0.00 40.10 1.40
427 501 1.292061 GGTTGTCGTGTGTGTAGCAA 58.708 50.000 0.00 0.00 0.00 3.91
433 507 1.775039 CTGCTGGGTTGTCGTGTGTG 61.775 60.000 0.00 0.00 0.00 3.82
465 539 0.183492 GGAGCTGCCACATGGGATAA 59.817 55.000 0.00 0.00 40.01 1.75
466 540 0.987613 TGGAGCTGCCACATGGGATA 60.988 55.000 1.53 0.00 43.33 2.59
490 564 4.363990 CTCCTGCGTGCACGGACT 62.364 66.667 37.47 0.00 40.23 3.85
548 626 2.153645 ACAGCATGAACGATCTGCAAA 58.846 42.857 15.52 0.00 39.69 3.68
587 666 2.285827 TTTTGCAACTTGAACACCGG 57.714 45.000 0.00 0.00 0.00 5.28
641 720 8.328864 CACTGAACTCGGCTTATTAGTATTTTC 58.671 37.037 0.00 0.00 0.00 2.29
664 744 4.462834 GCCTAGGTTAAAAATGCCTTCACT 59.537 41.667 11.31 0.00 34.07 3.41
708 788 5.786311 TGTAAGCCAAACATACTAAGTCGT 58.214 37.500 0.00 0.00 0.00 4.34
723 807 4.967084 AATACCGGTATGATGTAAGCCA 57.033 40.909 27.45 0.00 0.00 4.75
741 825 6.586344 CAGGTTCTCAGCTTATCCTGAAATA 58.414 40.000 12.14 0.00 43.28 1.40
743 827 4.836825 CAGGTTCTCAGCTTATCCTGAAA 58.163 43.478 12.14 0.00 43.28 2.69
756 840 1.375908 GCATGGACGCAGGTTCTCA 60.376 57.895 0.00 0.00 0.00 3.27
757 841 0.745845 ATGCATGGACGCAGGTTCTC 60.746 55.000 0.00 0.00 46.99 2.87
758 842 1.028330 CATGCATGGACGCAGGTTCT 61.028 55.000 19.40 0.00 46.99 3.01
759 843 1.430632 CATGCATGGACGCAGGTTC 59.569 57.895 19.40 0.00 46.99 3.62
760 844 3.594568 CATGCATGGACGCAGGTT 58.405 55.556 19.40 0.00 46.99 3.50
770 854 4.496341 CGACCTACTTTTAAGCCATGCATG 60.496 45.833 20.19 20.19 0.00 4.06
771 855 3.627577 CGACCTACTTTTAAGCCATGCAT 59.372 43.478 0.00 0.00 0.00 3.96
772 856 3.006940 CGACCTACTTTTAAGCCATGCA 58.993 45.455 0.00 0.00 0.00 3.96
773 857 3.007635 ACGACCTACTTTTAAGCCATGC 58.992 45.455 0.00 0.00 0.00 4.06
774 858 3.181510 GCACGACCTACTTTTAAGCCATG 60.182 47.826 0.00 0.00 0.00 3.66
775 859 3.007635 GCACGACCTACTTTTAAGCCAT 58.992 45.455 0.00 0.00 0.00 4.40
776 860 2.419667 GCACGACCTACTTTTAAGCCA 58.580 47.619 0.00 0.00 0.00 4.75
777 861 1.736126 GGCACGACCTACTTTTAAGCC 59.264 52.381 0.00 0.00 34.51 4.35
778 862 1.736126 GGGCACGACCTACTTTTAAGC 59.264 52.381 0.00 0.00 39.10 3.09
779 863 3.000727 CAGGGCACGACCTACTTTTAAG 58.999 50.000 0.00 0.00 39.34 1.85
780 864 2.872842 GCAGGGCACGACCTACTTTTAA 60.873 50.000 0.00 0.00 39.34 1.52
781 865 1.338389 GCAGGGCACGACCTACTTTTA 60.338 52.381 0.00 0.00 39.34 1.52
782 866 0.605589 GCAGGGCACGACCTACTTTT 60.606 55.000 0.00 0.00 39.34 2.27
783 867 1.003718 GCAGGGCACGACCTACTTT 60.004 57.895 0.00 0.00 39.34 2.66
784 868 1.889530 GAGCAGGGCACGACCTACTT 61.890 60.000 0.00 0.00 39.34 2.24
785 869 2.283966 AGCAGGGCACGACCTACT 60.284 61.111 0.00 0.00 39.34 2.57
786 870 2.184579 GAGCAGGGCACGACCTAC 59.815 66.667 0.00 0.00 39.34 3.18
787 871 3.449227 CGAGCAGGGCACGACCTA 61.449 66.667 1.86 0.00 44.57 3.08
796 880 1.025041 GGAAATAAAGCCGAGCAGGG 58.975 55.000 0.34 0.00 41.48 4.45
797 881 1.025041 GGGAAATAAAGCCGAGCAGG 58.975 55.000 0.00 0.00 44.97 4.85
798 882 1.401905 GTGGGAAATAAAGCCGAGCAG 59.598 52.381 0.00 0.00 0.00 4.24
799 883 1.459450 GTGGGAAATAAAGCCGAGCA 58.541 50.000 0.00 0.00 0.00 4.26
800 884 0.738975 GGTGGGAAATAAAGCCGAGC 59.261 55.000 0.00 0.00 0.00 5.03
801 885 1.389555 GGGTGGGAAATAAAGCCGAG 58.610 55.000 0.00 0.00 0.00 4.63
802 886 3.581163 GGGTGGGAAATAAAGCCGA 57.419 52.632 0.00 0.00 0.00 5.54
803 887 2.103410 CGGGTGGGAAATAAAGCCG 58.897 57.895 0.00 0.00 46.96 5.52
804 888 1.749063 CTTCGGGTGGGAAATAAAGCC 59.251 52.381 0.00 0.00 0.00 4.35
805 889 1.134367 GCTTCGGGTGGGAAATAAAGC 59.866 52.381 0.00 0.00 0.00 3.51
806 890 2.442413 TGCTTCGGGTGGGAAATAAAG 58.558 47.619 0.00 0.00 0.00 1.85
807 891 2.559231 GTTGCTTCGGGTGGGAAATAAA 59.441 45.455 0.00 0.00 0.00 1.40
808 892 2.164338 GTTGCTTCGGGTGGGAAATAA 58.836 47.619 0.00 0.00 0.00 1.40
809 893 1.614850 GGTTGCTTCGGGTGGGAAATA 60.615 52.381 0.00 0.00 0.00 1.40
810 894 0.898326 GGTTGCTTCGGGTGGGAAAT 60.898 55.000 0.00 0.00 0.00 2.17
811 895 1.529713 GGTTGCTTCGGGTGGGAAA 60.530 57.895 0.00 0.00 0.00 3.13
812 896 2.114411 GGTTGCTTCGGGTGGGAA 59.886 61.111 0.00 0.00 0.00 3.97
813 897 4.323477 CGGTTGCTTCGGGTGGGA 62.323 66.667 0.00 0.00 0.00 4.37
825 909 0.249699 TATAGATGGGCACGCGGTTG 60.250 55.000 12.47 0.56 0.00 3.77
826 910 0.466543 TTATAGATGGGCACGCGGTT 59.533 50.000 12.47 0.00 0.00 4.44
827 911 0.033504 CTTATAGATGGGCACGCGGT 59.966 55.000 12.47 0.00 0.00 5.68
828 912 0.317160 TCTTATAGATGGGCACGCGG 59.683 55.000 12.47 0.00 0.00 6.46
829 913 1.995484 CATCTTATAGATGGGCACGCG 59.005 52.381 3.53 3.53 46.34 6.01
830 914 3.257393 CTCATCTTATAGATGGGCACGC 58.743 50.000 14.75 0.00 45.25 5.34
853 937 6.895213 TAAGCCGTGCTCGTGTACTAACAC 62.895 50.000 7.47 0.00 44.87 3.32
854 938 0.387622 GCCGTGCTCGTGTACTAACA 60.388 55.000 7.47 0.00 35.01 2.41
855 939 0.109412 AGCCGTGCTCGTGTACTAAC 60.109 55.000 7.47 0.00 30.62 2.34
856 940 0.599558 AAGCCGTGCTCGTGTACTAA 59.400 50.000 7.47 0.00 38.25 2.24
857 941 1.452110 TAAGCCGTGCTCGTGTACTA 58.548 50.000 7.47 0.00 38.25 1.82
858 942 0.815734 ATAAGCCGTGCTCGTGTACT 59.184 50.000 7.47 0.00 38.25 2.73
859 943 2.480224 TATAAGCCGTGCTCGTGTAC 57.520 50.000 7.47 0.00 38.25 2.90
860 944 2.882761 AGATATAAGCCGTGCTCGTGTA 59.117 45.455 7.47 0.00 38.25 2.90
861 945 1.681793 AGATATAAGCCGTGCTCGTGT 59.318 47.619 7.47 0.00 38.25 4.49
862 946 2.423926 AGATATAAGCCGTGCTCGTG 57.576 50.000 7.47 0.12 38.25 4.35
863 947 3.305199 GGTTAGATATAAGCCGTGCTCGT 60.305 47.826 7.47 0.00 38.25 4.18
864 948 3.243336 GGTTAGATATAAGCCGTGCTCG 58.757 50.000 0.14 0.14 38.25 5.03
865 949 3.586892 GGGTTAGATATAAGCCGTGCTC 58.413 50.000 12.24 0.00 38.25 4.26
866 950 3.679824 GGGTTAGATATAAGCCGTGCT 57.320 47.619 12.24 0.00 42.56 4.40
877 961 9.877222 TCTCTGTGATTGTATAAGGGTTAGATA 57.123 33.333 0.00 0.00 0.00 1.98
878 962 8.783660 TCTCTGTGATTGTATAAGGGTTAGAT 57.216 34.615 0.00 0.00 0.00 1.98
879 963 7.839705 ACTCTCTGTGATTGTATAAGGGTTAGA 59.160 37.037 0.00 0.00 0.00 2.10
880 964 8.012957 ACTCTCTGTGATTGTATAAGGGTTAG 57.987 38.462 0.00 0.00 0.00 2.34
881 965 7.618117 TGACTCTCTGTGATTGTATAAGGGTTA 59.382 37.037 0.00 0.00 0.00 2.85
882 966 6.440647 TGACTCTCTGTGATTGTATAAGGGTT 59.559 38.462 0.00 0.00 0.00 4.11
883 967 5.958380 TGACTCTCTGTGATTGTATAAGGGT 59.042 40.000 0.00 0.00 0.00 4.34
884 968 6.471233 TGACTCTCTGTGATTGTATAAGGG 57.529 41.667 0.00 0.00 0.00 3.95
885 969 8.954950 AATTGACTCTCTGTGATTGTATAAGG 57.045 34.615 0.00 0.00 0.00 2.69
889 973 8.708378 TGGATAATTGACTCTCTGTGATTGTAT 58.292 33.333 0.00 0.00 0.00 2.29
890 974 8.078060 TGGATAATTGACTCTCTGTGATTGTA 57.922 34.615 0.00 0.00 0.00 2.41
891 975 6.950842 TGGATAATTGACTCTCTGTGATTGT 58.049 36.000 0.00 0.00 0.00 2.71
892 976 7.854557 TTGGATAATTGACTCTCTGTGATTG 57.145 36.000 0.00 0.00 0.00 2.67
893 977 7.718753 GGATTGGATAATTGACTCTCTGTGATT 59.281 37.037 0.00 0.00 0.00 2.57
910 994 3.700539 CAGCAATGGTGTTGGATTGGATA 59.299 43.478 3.99 0.00 32.65 2.59
923 1007 0.038599 TCTGCATCACCAGCAATGGT 59.961 50.000 0.00 0.00 42.17 3.55
970 1054 4.467084 ATGCACACCCTACCGGCG 62.467 66.667 0.00 0.00 33.26 6.46
1376 1487 2.839486 ATTGCTTGTCTTCTCCACGA 57.161 45.000 0.00 0.00 0.00 4.35
1651 1765 3.731216 AGTACGAATCGAAGATTGCATCG 59.269 43.478 10.55 0.98 45.12 3.84
1725 1842 5.912528 ACTTATTGTTCGTTCGTCAACATC 58.087 37.500 1.59 0.00 32.60 3.06
1751 1868 7.426410 TCTAGCATCTATAACTTCAAAGACCG 58.574 38.462 0.00 0.00 0.00 4.79
1994 6904 3.266636 CAAACAGTAGACCACACACACA 58.733 45.455 0.00 0.00 0.00 3.72
1995 6905 2.612212 CCAAACAGTAGACCACACACAC 59.388 50.000 0.00 0.00 0.00 3.82
1996 6906 2.237643 ACCAAACAGTAGACCACACACA 59.762 45.455 0.00 0.00 0.00 3.72
1997 6907 2.870411 GACCAAACAGTAGACCACACAC 59.130 50.000 0.00 0.00 0.00 3.82
2335 7252 1.406341 GGCACCTCGGCTTACATGTAA 60.406 52.381 17.16 17.16 37.17 2.41
2336 7253 0.177141 GGCACCTCGGCTTACATGTA 59.823 55.000 0.08 0.08 37.17 2.29
2337 7254 1.078426 GGCACCTCGGCTTACATGT 60.078 57.895 2.69 2.69 37.17 3.21
2338 7255 3.813596 GGCACCTCGGCTTACATG 58.186 61.111 0.00 0.00 37.17 3.21
2351 7268 1.174783 TGTAGAAGACGAGAGGGCAC 58.825 55.000 0.00 0.00 0.00 5.01
2352 7269 1.751351 CATGTAGAAGACGAGAGGGCA 59.249 52.381 0.00 0.00 0.00 5.36
2353 7270 1.537135 GCATGTAGAAGACGAGAGGGC 60.537 57.143 0.00 0.00 0.00 5.19
2354 7271 1.751351 TGCATGTAGAAGACGAGAGGG 59.249 52.381 0.00 0.00 0.00 4.30
2355 7272 2.425312 AGTGCATGTAGAAGACGAGAGG 59.575 50.000 0.00 0.00 0.00 3.69
2356 7273 3.433709 CAGTGCATGTAGAAGACGAGAG 58.566 50.000 0.00 0.00 0.00 3.20
2357 7274 2.164422 CCAGTGCATGTAGAAGACGAGA 59.836 50.000 0.00 0.00 0.00 4.04
2358 7275 2.534298 CCAGTGCATGTAGAAGACGAG 58.466 52.381 0.00 0.00 0.00 4.18
2359 7276 1.404181 GCCAGTGCATGTAGAAGACGA 60.404 52.381 0.00 0.00 37.47 4.20
2360 7277 1.002366 GCCAGTGCATGTAGAAGACG 58.998 55.000 0.00 0.00 37.47 4.18
2361 7278 2.099141 TGCCAGTGCATGTAGAAGAC 57.901 50.000 0.00 0.00 44.23 3.01
2370 7287 8.229028 CTGACTAAACAGAATTGCCAGTGCAT 62.229 42.308 0.00 0.00 42.68 3.96
2371 7288 6.996969 CTGACTAAACAGAATTGCCAGTGCA 61.997 44.000 0.00 0.00 42.03 4.57
2372 7289 3.253188 TGACTAAACAGAATTGCCAGTGC 59.747 43.478 0.00 0.00 38.26 4.40
2373 7290 4.083110 CCTGACTAAACAGAATTGCCAGTG 60.083 45.833 0.00 0.00 39.94 3.66
2374 7291 4.074970 CCTGACTAAACAGAATTGCCAGT 58.925 43.478 0.00 0.00 39.94 4.00
2375 7292 4.326826 TCCTGACTAAACAGAATTGCCAG 58.673 43.478 0.00 0.00 39.94 4.85
2376 7293 4.365514 TCCTGACTAAACAGAATTGCCA 57.634 40.909 0.00 0.00 39.94 4.92
2377 7294 4.762251 AGTTCCTGACTAAACAGAATTGCC 59.238 41.667 0.00 0.00 39.94 4.52
2378 7295 5.948992 AGTTCCTGACTAAACAGAATTGC 57.051 39.130 0.00 0.00 39.94 3.56
2388 7305 4.863491 GACACGTGTTAGTTCCTGACTAA 58.137 43.478 24.26 0.00 46.07 2.24
2389 7306 4.494350 GACACGTGTTAGTTCCTGACTA 57.506 45.455 24.26 0.00 39.86 2.59
2390 7307 3.366440 GACACGTGTTAGTTCCTGACT 57.634 47.619 24.26 0.00 42.55 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.