Multiple sequence alignment - TraesCS3A01G031500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G031500 chr3A 100.000 2991 0 0 1 2991 17359425 17356435 0.000000e+00 5524.0
1 TraesCS3A01G031500 chr3A 92.142 1667 63 21 805 2429 16152658 16151018 0.000000e+00 2290.0
2 TraesCS3A01G031500 chr3A 88.732 568 34 5 2453 2991 16151025 16150459 0.000000e+00 667.0
3 TraesCS3A01G031500 chr3A 82.333 583 94 8 1419 1996 16072286 16072864 5.760000e-137 497.0
4 TraesCS3A01G031500 chr3A 82.038 579 100 3 1418 1994 15996905 15996329 9.630000e-135 490.0
5 TraesCS3A01G031500 chr3A 90.096 313 14 7 527 826 16153000 16152692 1.010000e-104 390.0
6 TraesCS3A01G031500 chr3A 80.144 418 72 7 2323 2730 16265079 16264663 4.850000e-78 302.0
7 TraesCS3A01G031500 chr3A 79.545 396 72 6 2323 2710 16155316 16154922 1.060000e-69 274.0
8 TraesCS3A01G031500 chr3A 88.333 60 7 0 1300 1359 690742463 690742522 4.140000e-09 73.1
9 TraesCS3A01G031500 chr3D 91.329 2514 125 31 534 2991 5347434 5344958 0.000000e+00 3349.0
10 TraesCS3A01G031500 chr3D 88.038 2558 170 67 527 2991 5388712 5386198 0.000000e+00 2904.0
11 TraesCS3A01G031500 chr3D 80.164 610 96 8 1418 2003 5338317 5337709 1.650000e-117 433.0
12 TraesCS3A01G031500 chr3D 79.551 401 67 8 2323 2710 5359768 5359370 3.800000e-69 272.0
13 TraesCS3A01G031500 chr3B 83.074 579 96 2 1418 1994 13238765 13238187 2.640000e-145 525.0
14 TraesCS3A01G031500 chr3B 82.211 579 100 3 1418 1994 12589189 12589766 2.070000e-136 496.0
15 TraesCS3A01G031500 chr3B 81.026 585 108 2 1418 1999 13173144 13172560 2.100000e-126 462.0
16 TraesCS3A01G031500 chr3B 80.585 376 57 9 2323 2684 13170708 13170335 2.940000e-70 276.0
17 TraesCS3A01G031500 chr6A 82.880 368 59 3 1 366 496589552 496589187 7.990000e-86 327.0
18 TraesCS3A01G031500 chr2A 82.656 369 59 4 1 366 204934388 204934022 3.720000e-84 322.0
19 TraesCS3A01G031500 chrUn 80.048 421 73 7 2320 2730 296442754 296443173 4.850000e-78 302.0
20 TraesCS3A01G031500 chrUn 80.048 421 73 7 2320 2730 296447808 296448227 4.850000e-78 302.0
21 TraesCS3A01G031500 chrUn 78.241 432 86 8 1 428 233318610 233319037 1.370000e-68 270.0
22 TraesCS3A01G031500 chrUn 78.241 432 86 8 1 428 420465740 420466167 1.370000e-68 270.0
23 TraesCS3A01G031500 chr4B 78.704 432 84 8 1 428 630660049 630659622 6.310000e-72 281.0
24 TraesCS3A01G031500 chr4B 77.726 431 90 6 1 428 630647853 630647426 2.960000e-65 259.0
25 TraesCS3A01G031500 chr4B 97.436 39 1 0 1302 1340 437166042 437166080 1.920000e-07 67.6
26 TraesCS3A01G031500 chr5A 80.441 363 71 0 1 363 561989079 561989441 8.170000e-71 278.0
27 TraesCS3A01G031500 chr5B 79.019 367 77 0 1 367 78068652 78069018 4.950000e-63 252.0
28 TraesCS3A01G031500 chr2D 77.218 417 89 6 13 426 613111946 613111533 3.850000e-59 239.0
29 TraesCS3A01G031500 chr2D 97.674 43 1 0 1300 1342 20658118 20658076 1.150000e-09 75.0
30 TraesCS3A01G031500 chr2D 97.619 42 1 0 1305 1346 565589057 565589098 4.140000e-09 73.1
31 TraesCS3A01G031500 chr2D 95.349 43 2 0 1300 1342 20620160 20620118 5.350000e-08 69.4
32 TraesCS3A01G031500 chr4D 85.294 68 5 4 1309 1371 362794064 362793997 6.920000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G031500 chr3A 17356435 17359425 2990 True 5524.00 5524 100.00000 1 2991 1 chr3A.!!$R3 2990
1 TraesCS3A01G031500 chr3A 16150459 16155316 4857 True 905.25 2290 87.62875 527 2991 4 chr3A.!!$R4 2464
2 TraesCS3A01G031500 chr3A 16072286 16072864 578 False 497.00 497 82.33300 1419 1996 1 chr3A.!!$F1 577
3 TraesCS3A01G031500 chr3A 15996329 15996905 576 True 490.00 490 82.03800 1418 1994 1 chr3A.!!$R1 576
4 TraesCS3A01G031500 chr3D 5344958 5347434 2476 True 3349.00 3349 91.32900 534 2991 1 chr3D.!!$R2 2457
5 TraesCS3A01G031500 chr3D 5386198 5388712 2514 True 2904.00 2904 88.03800 527 2991 1 chr3D.!!$R4 2464
6 TraesCS3A01G031500 chr3D 5337709 5338317 608 True 433.00 433 80.16400 1418 2003 1 chr3D.!!$R1 585
7 TraesCS3A01G031500 chr3B 13238187 13238765 578 True 525.00 525 83.07400 1418 1994 1 chr3B.!!$R1 576
8 TraesCS3A01G031500 chr3B 12589189 12589766 577 False 496.00 496 82.21100 1418 1994 1 chr3B.!!$F1 576
9 TraesCS3A01G031500 chr3B 13170335 13173144 2809 True 369.00 462 80.80550 1418 2684 2 chr3B.!!$R2 1266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 223 0.033504 GCAGACAGTTTGGTCTCCGA 59.966 55.0 0.0 0.0 46.05 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2211 5550 0.473755 TGCACACATCACCCTTCAGT 59.526 50.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.855159 GTGAAACGCCACTCCCTAT 57.145 52.632 0.00 0.00 34.38 2.57
30 31 1.653151 GTGAAACGCCACTCCCTATC 58.347 55.000 0.00 0.00 34.38 2.08
31 32 0.539986 TGAAACGCCACTCCCTATCC 59.460 55.000 0.00 0.00 0.00 2.59
32 33 0.179054 GAAACGCCACTCCCTATCCC 60.179 60.000 0.00 0.00 0.00 3.85
33 34 1.632965 AAACGCCACTCCCTATCCCC 61.633 60.000 0.00 0.00 0.00 4.81
34 35 2.122813 CGCCACTCCCTATCCCCT 60.123 66.667 0.00 0.00 0.00 4.79
35 36 2.511452 CGCCACTCCCTATCCCCTG 61.511 68.421 0.00 0.00 0.00 4.45
37 38 1.700042 GCCACTCCCTATCCCCTGTG 61.700 65.000 0.00 0.00 0.00 3.66
38 39 1.700042 CCACTCCCTATCCCCTGTGC 61.700 65.000 0.00 0.00 0.00 4.57
39 40 0.692419 CACTCCCTATCCCCTGTGCT 60.692 60.000 0.00 0.00 0.00 4.40
41 42 1.216990 CTCCCTATCCCCTGTGCTTT 58.783 55.000 0.00 0.00 0.00 3.51
42 43 1.141858 CTCCCTATCCCCTGTGCTTTC 59.858 57.143 0.00 0.00 0.00 2.62
45 46 2.091665 CCCTATCCCCTGTGCTTTCATT 60.092 50.000 0.00 0.00 0.00 2.57
47 48 3.117738 CCTATCCCCTGTGCTTTCATTCT 60.118 47.826 0.00 0.00 0.00 2.40
48 49 2.205022 TCCCCTGTGCTTTCATTCTG 57.795 50.000 0.00 0.00 0.00 3.02
49 50 1.704628 TCCCCTGTGCTTTCATTCTGA 59.295 47.619 0.00 0.00 0.00 3.27
50 51 2.108075 TCCCCTGTGCTTTCATTCTGAA 59.892 45.455 0.00 0.00 34.03 3.02
51 52 3.094572 CCCCTGTGCTTTCATTCTGAAT 58.905 45.455 0.00 0.00 36.11 2.57
52 53 3.129988 CCCCTGTGCTTTCATTCTGAATC 59.870 47.826 0.00 0.00 36.11 2.52
53 54 3.760151 CCCTGTGCTTTCATTCTGAATCA 59.240 43.478 0.00 0.00 36.11 2.57
55 56 5.279106 CCCTGTGCTTTCATTCTGAATCAAA 60.279 40.000 0.00 0.00 36.11 2.69
56 57 6.218019 CCTGTGCTTTCATTCTGAATCAAAA 58.782 36.000 0.00 4.02 36.11 2.44
57 58 6.145048 CCTGTGCTTTCATTCTGAATCAAAAC 59.855 38.462 0.00 0.00 36.11 2.43
58 59 6.571605 TGTGCTTTCATTCTGAATCAAAACA 58.428 32.000 0.00 0.00 36.11 2.83
59 60 7.211573 TGTGCTTTCATTCTGAATCAAAACAT 58.788 30.769 6.20 0.00 36.11 2.71
60 61 7.383029 TGTGCTTTCATTCTGAATCAAAACATC 59.617 33.333 6.20 2.60 36.11 3.06
61 62 7.383029 GTGCTTTCATTCTGAATCAAAACATCA 59.617 33.333 6.20 0.00 36.11 3.07
62 63 7.927092 TGCTTTCATTCTGAATCAAAACATCAA 59.073 29.630 0.00 0.00 36.11 2.57
68 69 7.933728 TTCTGAATCAAAACATCAATGTGTG 57.066 32.000 0.00 0.00 41.61 3.82
70 71 7.140705 TCTGAATCAAAACATCAATGTGTGTC 58.859 34.615 0.00 0.00 41.61 3.67
71 72 6.215121 TGAATCAAAACATCAATGTGTGTCC 58.785 36.000 0.00 0.00 41.61 4.02
72 73 6.040729 TGAATCAAAACATCAATGTGTGTCCT 59.959 34.615 0.00 0.00 41.61 3.85
73 74 5.185668 TCAAAACATCAATGTGTGTCCTG 57.814 39.130 0.00 0.00 41.61 3.86
74 75 3.648339 AAACATCAATGTGTGTCCTGC 57.352 42.857 0.00 0.00 41.61 4.85
76 77 3.701205 ACATCAATGTGTGTCCTGCTA 57.299 42.857 0.00 0.00 40.03 3.49
79 80 5.933617 ACATCAATGTGTGTCCTGCTATAT 58.066 37.500 0.00 0.00 40.03 0.86
80 81 5.761726 ACATCAATGTGTGTCCTGCTATATG 59.238 40.000 0.00 0.00 40.03 1.78
82 83 6.178607 TCAATGTGTGTCCTGCTATATGAT 57.821 37.500 0.00 0.00 0.00 2.45
84 85 7.056006 TCAATGTGTGTCCTGCTATATGATTT 58.944 34.615 0.00 0.00 0.00 2.17
85 86 7.227314 TCAATGTGTGTCCTGCTATATGATTTC 59.773 37.037 0.00 0.00 0.00 2.17
86 87 5.988287 TGTGTGTCCTGCTATATGATTTCA 58.012 37.500 0.00 0.00 0.00 2.69
87 88 6.051074 TGTGTGTCCTGCTATATGATTTCAG 58.949 40.000 0.00 0.00 0.00 3.02
88 89 5.468072 GTGTGTCCTGCTATATGATTTCAGG 59.532 44.000 0.00 0.00 44.18 3.86
89 90 4.453819 GTGTCCTGCTATATGATTTCAGGC 59.546 45.833 0.00 0.00 42.92 4.85
90 91 4.349048 TGTCCTGCTATATGATTTCAGGCT 59.651 41.667 0.00 0.00 42.92 4.58
91 92 5.163163 TGTCCTGCTATATGATTTCAGGCTT 60.163 40.000 0.00 0.00 42.92 4.35
92 93 6.043127 TGTCCTGCTATATGATTTCAGGCTTA 59.957 38.462 0.00 0.00 42.92 3.09
93 94 6.370166 GTCCTGCTATATGATTTCAGGCTTAC 59.630 42.308 0.00 0.00 42.92 2.34
95 96 6.186420 TGCTATATGATTTCAGGCTTACCA 57.814 37.500 0.00 0.00 39.06 3.25
97 98 6.183361 TGCTATATGATTTCAGGCTTACCACT 60.183 38.462 0.00 0.00 39.06 4.00
98 99 6.148480 GCTATATGATTTCAGGCTTACCACTG 59.852 42.308 0.00 0.00 39.06 3.66
99 100 4.574674 ATGATTTCAGGCTTACCACTGA 57.425 40.909 0.00 0.00 41.63 3.41
103 104 2.672961 TCAGGCTTACCACTGAATCG 57.327 50.000 0.00 0.00 40.51 3.34
104 105 1.899814 TCAGGCTTACCACTGAATCGT 59.100 47.619 0.00 0.00 40.51 3.73
105 106 2.301870 TCAGGCTTACCACTGAATCGTT 59.698 45.455 0.00 0.00 40.51 3.85
106 107 2.416547 CAGGCTTACCACTGAATCGTTG 59.583 50.000 0.00 0.00 39.06 4.10
107 108 2.038557 AGGCTTACCACTGAATCGTTGT 59.961 45.455 0.00 0.00 39.06 3.32
108 109 2.812011 GGCTTACCACTGAATCGTTGTT 59.188 45.455 0.00 0.00 35.26 2.83
109 110 3.120304 GGCTTACCACTGAATCGTTGTTC 60.120 47.826 0.00 0.00 35.26 3.18
110 111 3.120304 GCTTACCACTGAATCGTTGTTCC 60.120 47.826 0.00 0.00 0.00 3.62
111 112 2.631160 ACCACTGAATCGTTGTTCCA 57.369 45.000 0.00 0.00 0.00 3.53
112 113 2.925724 ACCACTGAATCGTTGTTCCAA 58.074 42.857 0.00 0.00 0.00 3.53
113 114 3.283751 ACCACTGAATCGTTGTTCCAAA 58.716 40.909 0.00 0.00 0.00 3.28
114 115 3.697045 ACCACTGAATCGTTGTTCCAAAA 59.303 39.130 0.00 0.00 0.00 2.44
117 118 4.734854 CACTGAATCGTTGTTCCAAAACAG 59.265 41.667 0.00 0.00 45.72 3.16
118 119 3.701241 TGAATCGTTGTTCCAAAACAGC 58.299 40.909 0.00 0.00 45.72 4.40
120 121 2.553079 TCGTTGTTCCAAAACAGCAC 57.447 45.000 6.07 0.00 45.72 4.40
121 122 1.813178 TCGTTGTTCCAAAACAGCACA 59.187 42.857 6.07 0.00 45.72 4.57
123 124 2.598192 CGTTGTTCCAAAACAGCACAAG 59.402 45.455 6.07 0.00 45.72 3.16
124 125 2.929398 GTTGTTCCAAAACAGCACAAGG 59.071 45.455 1.01 0.00 45.72 3.61
126 127 0.463620 TTCCAAAACAGCACAAGGCC 59.536 50.000 0.00 0.00 46.50 5.19
127 128 0.685785 TCCAAAACAGCACAAGGCCA 60.686 50.000 5.01 0.00 46.50 5.36
129 130 0.530431 CAAAACAGCACAAGGCCACC 60.530 55.000 5.01 0.00 46.50 4.61
132 133 2.203394 CAGCACAAGGCCACCACT 60.203 61.111 5.01 0.00 46.50 4.00
133 134 2.113986 AGCACAAGGCCACCACTC 59.886 61.111 5.01 0.00 46.50 3.51
135 136 2.263741 GCACAAGGCCACCACTCAG 61.264 63.158 5.01 0.00 36.11 3.35
141 142 4.416738 GCCACCACTCAGGCCCTC 62.417 72.222 0.00 0.00 45.18 4.30
142 143 4.087892 CCACCACTCAGGCCCTCG 62.088 72.222 0.00 0.00 43.14 4.63
143 144 4.767255 CACCACTCAGGCCCTCGC 62.767 72.222 0.00 0.00 43.14 5.03
145 146 4.154347 CCACTCAGGCCCTCGCTC 62.154 72.222 0.00 0.00 34.44 5.03
148 149 2.186384 CTCAGGCCCTCGCTCTTG 59.814 66.667 0.00 0.00 34.44 3.02
149 150 2.604686 TCAGGCCCTCGCTCTTGT 60.605 61.111 0.00 0.00 34.44 3.16
150 151 2.125350 CAGGCCCTCGCTCTTGTC 60.125 66.667 0.00 0.00 34.44 3.18
151 152 2.604686 AGGCCCTCGCTCTTGTCA 60.605 61.111 0.00 0.00 34.44 3.58
152 153 2.435059 GGCCCTCGCTCTTGTCAC 60.435 66.667 0.00 0.00 34.44 3.67
153 154 2.435059 GCCCTCGCTCTTGTCACC 60.435 66.667 0.00 0.00 0.00 4.02
154 155 3.059982 CCCTCGCTCTTGTCACCA 58.940 61.111 0.00 0.00 0.00 4.17
155 156 1.371183 CCCTCGCTCTTGTCACCAA 59.629 57.895 0.00 0.00 0.00 3.67
156 157 0.250295 CCCTCGCTCTTGTCACCAAA 60.250 55.000 0.00 0.00 0.00 3.28
157 158 1.593196 CCTCGCTCTTGTCACCAAAA 58.407 50.000 0.00 0.00 0.00 2.44
158 159 1.532868 CCTCGCTCTTGTCACCAAAAG 59.467 52.381 0.00 0.00 0.00 2.27
159 160 0.944386 TCGCTCTTGTCACCAAAAGC 59.056 50.000 0.00 0.00 40.54 3.51
160 161 0.662619 CGCTCTTGTCACCAAAAGCA 59.337 50.000 2.17 0.00 43.45 3.91
161 162 1.267806 CGCTCTTGTCACCAAAAGCAT 59.732 47.619 2.17 0.00 43.45 3.79
162 163 2.669364 GCTCTTGTCACCAAAAGCATG 58.331 47.619 0.00 0.00 42.92 4.06
164 165 1.340889 TCTTGTCACCAAAAGCATGCC 59.659 47.619 15.66 0.00 0.00 4.40
166 167 2.284754 TGTCACCAAAAGCATGCCTA 57.715 45.000 15.66 0.00 0.00 3.93
167 168 2.591923 TGTCACCAAAAGCATGCCTAA 58.408 42.857 15.66 0.00 0.00 2.69
169 170 3.243704 TGTCACCAAAAGCATGCCTAAAC 60.244 43.478 15.66 3.07 0.00 2.01
170 171 2.298729 TCACCAAAAGCATGCCTAAACC 59.701 45.455 15.66 0.00 0.00 3.27
173 174 1.622811 CAAAAGCATGCCTAAACCCCA 59.377 47.619 15.66 0.00 0.00 4.96
174 175 2.022718 AAAGCATGCCTAAACCCCAA 57.977 45.000 15.66 0.00 0.00 4.12
175 176 1.266178 AAGCATGCCTAAACCCCAAC 58.734 50.000 15.66 0.00 0.00 3.77
177 178 1.944234 GCATGCCTAAACCCCAACCG 61.944 60.000 6.36 0.00 0.00 4.44
178 179 1.000145 ATGCCTAAACCCCAACCGG 60.000 57.895 0.00 0.00 0.00 5.28
179 180 1.502527 ATGCCTAAACCCCAACCGGA 61.503 55.000 9.46 0.00 0.00 5.14
180 181 1.075305 GCCTAAACCCCAACCGGAA 59.925 57.895 9.46 0.00 0.00 4.30
181 182 1.246056 GCCTAAACCCCAACCGGAAC 61.246 60.000 9.46 0.00 0.00 3.62
182 183 0.609957 CCTAAACCCCAACCGGAACC 60.610 60.000 9.46 0.00 0.00 3.62
185 186 1.647334 AAACCCCAACCGGAACCTCA 61.647 55.000 9.46 0.00 0.00 3.86
186 187 1.647334 AACCCCAACCGGAACCTCAA 61.647 55.000 9.46 0.00 0.00 3.02
187 188 1.303317 CCCCAACCGGAACCTCAAG 60.303 63.158 9.46 0.00 0.00 3.02
188 189 1.454539 CCCAACCGGAACCTCAAGT 59.545 57.895 9.46 0.00 0.00 3.16
191 192 1.202770 CCAACCGGAACCTCAAGTCTT 60.203 52.381 9.46 0.00 0.00 3.01
192 193 1.873591 CAACCGGAACCTCAAGTCTTG 59.126 52.381 9.46 6.21 0.00 3.02
194 195 1.291877 CCGGAACCTCAAGTCTTGCG 61.292 60.000 7.78 1.35 0.00 4.85
197 198 0.793250 GAACCTCAAGTCTTGCGCTC 59.207 55.000 9.73 0.00 0.00 5.03
198 199 0.394565 AACCTCAAGTCTTGCGCTCT 59.605 50.000 9.73 0.00 0.00 4.09
200 201 1.075425 CCTCAAGTCTTGCGCTCTCG 61.075 60.000 9.73 0.00 39.07 4.04
201 202 0.387878 CTCAAGTCTTGCGCTCTCGT 60.388 55.000 9.73 0.00 38.14 4.18
203 204 1.135660 TCAAGTCTTGCGCTCTCGTAG 60.136 52.381 9.73 0.00 38.14 3.51
216 217 1.961394 TCTCGTAGCAGACAGTTTGGT 59.039 47.619 0.93 0.93 0.00 3.67
217 218 2.030185 TCTCGTAGCAGACAGTTTGGTC 60.030 50.000 0.00 0.00 38.08 4.02
219 220 2.030185 TCGTAGCAGACAGTTTGGTCTC 60.030 50.000 0.00 0.00 46.05 3.36
220 221 2.689646 GTAGCAGACAGTTTGGTCTCC 58.310 52.381 0.00 0.00 46.05 3.71
221 222 0.034059 AGCAGACAGTTTGGTCTCCG 59.966 55.000 0.00 0.00 46.05 4.63
222 223 0.033504 GCAGACAGTTTGGTCTCCGA 59.966 55.000 0.00 0.00 46.05 4.55
230 231 4.127171 CAGTTTGGTCTCCGAGAGAAAAA 58.873 43.478 0.00 6.93 40.59 1.94
231 232 4.024809 CAGTTTGGTCTCCGAGAGAAAAAC 60.025 45.833 20.95 20.95 40.59 2.43
234 235 4.145365 TGGTCTCCGAGAGAAAAACAAA 57.855 40.909 0.00 0.00 40.59 2.83
235 236 4.519213 TGGTCTCCGAGAGAAAAACAAAA 58.481 39.130 0.00 0.00 40.59 2.44
236 237 4.334481 TGGTCTCCGAGAGAAAAACAAAAC 59.666 41.667 0.00 0.00 40.59 2.43
237 238 4.334481 GGTCTCCGAGAGAAAAACAAAACA 59.666 41.667 0.00 0.00 40.59 2.83
238 239 5.263948 GTCTCCGAGAGAAAAACAAAACAC 58.736 41.667 0.00 0.00 40.59 3.32
240 241 3.064271 TCCGAGAGAAAAACAAAACACGG 59.936 43.478 0.00 0.00 38.31 4.94
241 242 3.359654 CGAGAGAAAAACAAAACACGGG 58.640 45.455 0.00 0.00 0.00 5.28
242 243 3.181504 CGAGAGAAAAACAAAACACGGGT 60.182 43.478 0.00 0.00 0.00 5.28
243 244 4.102649 GAGAGAAAAACAAAACACGGGTG 58.897 43.478 0.00 0.00 0.00 4.61
246 247 4.429108 AGAAAAACAAAACACGGGTGATG 58.571 39.130 5.71 0.00 0.00 3.07
250 251 1.202359 ACAAAACACGGGTGATGCAAC 60.202 47.619 5.71 0.00 0.00 4.17
251 252 1.066908 CAAAACACGGGTGATGCAACT 59.933 47.619 5.71 0.00 0.00 3.16
253 254 0.465460 AACACGGGTGATGCAACTGT 60.465 50.000 5.71 0.00 41.88 3.55
254 255 0.394938 ACACGGGTGATGCAACTGTA 59.605 50.000 5.71 0.00 38.78 2.74
255 256 0.796312 CACGGGTGATGCAACTGTAC 59.204 55.000 0.00 0.00 38.78 2.90
256 257 0.321298 ACGGGTGATGCAACTGTACC 60.321 55.000 0.00 0.00 39.08 3.34
259 260 1.812571 GGGTGATGCAACTGTACCAAG 59.187 52.381 0.00 0.00 33.10 3.61
260 261 2.504367 GGTGATGCAACTGTACCAAGT 58.496 47.619 0.00 0.00 0.00 3.16
261 262 2.884639 GGTGATGCAACTGTACCAAGTT 59.115 45.455 0.00 0.00 41.08 2.66
270 271 5.438761 AACTGTACCAAGTTGCAGATTTC 57.561 39.130 13.81 0.00 38.95 2.17
271 272 4.718961 ACTGTACCAAGTTGCAGATTTCT 58.281 39.130 13.81 0.00 33.57 2.52
273 274 5.009010 ACTGTACCAAGTTGCAGATTTCTTG 59.991 40.000 13.81 0.00 37.57 3.02
274 275 5.129634 TGTACCAAGTTGCAGATTTCTTGA 58.870 37.500 14.46 0.36 39.39 3.02
275 276 5.592282 TGTACCAAGTTGCAGATTTCTTGAA 59.408 36.000 14.46 0.00 39.39 2.69
276 277 4.936891 ACCAAGTTGCAGATTTCTTGAAC 58.063 39.130 14.46 0.00 39.39 3.18
277 278 4.646492 ACCAAGTTGCAGATTTCTTGAACT 59.354 37.500 14.46 0.00 39.39 3.01
278 279 4.980434 CCAAGTTGCAGATTTCTTGAACTG 59.020 41.667 14.46 0.00 39.39 3.16
279 280 5.450965 CCAAGTTGCAGATTTCTTGAACTGT 60.451 40.000 14.46 0.00 39.39 3.55
280 281 5.429957 AGTTGCAGATTTCTTGAACTGTC 57.570 39.130 0.00 0.00 33.57 3.51
282 283 5.238214 AGTTGCAGATTTCTTGAACTGTCTC 59.762 40.000 0.00 0.00 33.57 3.36
284 285 3.124297 GCAGATTTCTTGAACTGTCTCGG 59.876 47.826 0.00 0.00 33.57 4.63
285 286 3.681897 CAGATTTCTTGAACTGTCTCGGG 59.318 47.826 0.00 0.00 0.00 5.14
287 288 0.034896 TTCTTGAACTGTCTCGGGCC 59.965 55.000 0.00 0.00 0.00 5.80
288 289 1.738099 CTTGAACTGTCTCGGGCCG 60.738 63.158 22.51 22.51 0.00 6.13
289 290 3.876589 TTGAACTGTCTCGGGCCGC 62.877 63.158 23.83 8.26 0.00 6.53
306 307 4.636435 CCCGCAACCCCGACAGTT 62.636 66.667 0.00 0.00 0.00 3.16
309 310 1.890041 CGCAACCCCGACAGTTCAA 60.890 57.895 0.00 0.00 0.00 2.69
310 311 1.440938 CGCAACCCCGACAGTTCAAA 61.441 55.000 0.00 0.00 0.00 2.69
311 312 0.958822 GCAACCCCGACAGTTCAAAT 59.041 50.000 0.00 0.00 0.00 2.32
312 313 1.339929 GCAACCCCGACAGTTCAAATT 59.660 47.619 0.00 0.00 0.00 1.82
314 315 3.004944 GCAACCCCGACAGTTCAAATTTA 59.995 43.478 0.00 0.00 0.00 1.40
315 316 4.500035 GCAACCCCGACAGTTCAAATTTAA 60.500 41.667 0.00 0.00 0.00 1.52
316 317 5.593010 CAACCCCGACAGTTCAAATTTAAA 58.407 37.500 0.00 0.00 0.00 1.52
317 318 5.855740 ACCCCGACAGTTCAAATTTAAAA 57.144 34.783 0.00 0.00 0.00 1.52
318 319 6.413783 ACCCCGACAGTTCAAATTTAAAAT 57.586 33.333 0.00 0.00 0.00 1.82
319 320 7.527568 ACCCCGACAGTTCAAATTTAAAATA 57.472 32.000 0.00 0.00 0.00 1.40
322 323 9.083080 CCCCGACAGTTCAAATTTAAAATATTC 57.917 33.333 0.00 0.00 0.00 1.75
335 336 3.691049 AAATATTCATTGTGTCCGGCG 57.309 42.857 0.00 0.00 0.00 6.46
336 337 1.593196 ATATTCATTGTGTCCGGCGG 58.407 50.000 22.51 22.51 0.00 6.13
337 338 0.462937 TATTCATTGTGTCCGGCGGG 60.463 55.000 27.98 8.04 0.00 6.13
362 363 4.688966 GAGGGATGCCGCCGATCC 62.689 72.222 0.00 1.76 39.04 3.36
364 365 4.996434 GGGATGCCGCCGATCCTG 62.996 72.222 9.08 0.00 39.61 3.86
366 367 4.615815 GATGCCGCCGATCCTGCT 62.616 66.667 0.00 0.00 0.00 4.24
369 370 3.606662 GCCGCCGATCCTGCTAGA 61.607 66.667 0.00 0.00 0.00 2.43
370 371 2.647875 CCGCCGATCCTGCTAGAG 59.352 66.667 0.00 0.00 0.00 2.43
371 372 2.196925 CCGCCGATCCTGCTAGAGT 61.197 63.158 0.00 0.00 0.00 3.24
372 373 1.736586 CGCCGATCCTGCTAGAGTT 59.263 57.895 0.00 0.00 0.00 3.01
373 374 0.103208 CGCCGATCCTGCTAGAGTTT 59.897 55.000 0.00 0.00 0.00 2.66
374 375 1.859383 GCCGATCCTGCTAGAGTTTC 58.141 55.000 0.00 0.00 0.00 2.78
375 376 1.866063 GCCGATCCTGCTAGAGTTTCG 60.866 57.143 0.00 0.00 0.00 3.46
376 377 1.405821 CCGATCCTGCTAGAGTTTCGT 59.594 52.381 0.00 0.00 0.00 3.85
377 378 2.159226 CCGATCCTGCTAGAGTTTCGTT 60.159 50.000 0.00 0.00 0.00 3.85
379 380 3.927142 CGATCCTGCTAGAGTTTCGTTTT 59.073 43.478 0.00 0.00 0.00 2.43
380 381 4.201628 CGATCCTGCTAGAGTTTCGTTTTG 60.202 45.833 0.00 0.00 0.00 2.44
381 382 4.330944 TCCTGCTAGAGTTTCGTTTTGA 57.669 40.909 0.00 0.00 0.00 2.69
382 383 4.699637 TCCTGCTAGAGTTTCGTTTTGAA 58.300 39.130 0.00 0.00 33.85 2.69
383 384 4.510340 TCCTGCTAGAGTTTCGTTTTGAAC 59.490 41.667 0.00 0.00 35.97 3.18
384 385 4.272504 CCTGCTAGAGTTTCGTTTTGAACA 59.727 41.667 0.00 0.00 35.97 3.18
385 386 5.151632 TGCTAGAGTTTCGTTTTGAACAC 57.848 39.130 0.00 0.00 35.97 3.32
386 387 4.873827 TGCTAGAGTTTCGTTTTGAACACT 59.126 37.500 0.00 0.00 35.97 3.55
387 388 6.044046 TGCTAGAGTTTCGTTTTGAACACTA 58.956 36.000 0.00 0.00 35.97 2.74
388 389 6.019318 TGCTAGAGTTTCGTTTTGAACACTAC 60.019 38.462 0.00 0.00 35.97 2.73
390 391 6.345920 AGAGTTTCGTTTTGAACACTACTG 57.654 37.500 0.00 0.00 35.97 2.74
392 393 6.035758 AGAGTTTCGTTTTGAACACTACTGTC 59.964 38.462 0.00 0.00 35.97 3.51
394 395 7.037438 AGTTTCGTTTTGAACACTACTGTCTA 58.963 34.615 0.00 0.00 35.97 2.59
395 396 6.817270 TTCGTTTTGAACACTACTGTCTAC 57.183 37.500 0.00 0.00 0.00 2.59
396 397 5.893687 TCGTTTTGAACACTACTGTCTACA 58.106 37.500 0.00 0.00 0.00 2.74
397 398 7.009815 TTTCGTTTTGAACACTACTGTCTACAG 59.990 37.037 8.56 8.56 42.18 2.74
408 409 2.665165 CTGTCTACAGCCTCTCCATCT 58.335 52.381 0.00 0.00 37.15 2.90
409 410 3.826524 CTGTCTACAGCCTCTCCATCTA 58.173 50.000 0.00 0.00 37.15 1.98
410 411 3.556999 TGTCTACAGCCTCTCCATCTAC 58.443 50.000 0.00 0.00 0.00 2.59
411 412 3.203263 TGTCTACAGCCTCTCCATCTACT 59.797 47.826 0.00 0.00 0.00 2.57
412 413 3.818773 GTCTACAGCCTCTCCATCTACTC 59.181 52.174 0.00 0.00 0.00 2.59
413 414 2.080654 ACAGCCTCTCCATCTACTCC 57.919 55.000 0.00 0.00 0.00 3.85
414 415 1.337118 CAGCCTCTCCATCTACTCCC 58.663 60.000 0.00 0.00 0.00 4.30
415 416 1.133199 CAGCCTCTCCATCTACTCCCT 60.133 57.143 0.00 0.00 0.00 4.20
417 418 2.022527 AGCCTCTCCATCTACTCCCTTT 60.023 50.000 0.00 0.00 0.00 3.11
418 419 3.207777 AGCCTCTCCATCTACTCCCTTTA 59.792 47.826 0.00 0.00 0.00 1.85
419 420 3.967987 GCCTCTCCATCTACTCCCTTTAA 59.032 47.826 0.00 0.00 0.00 1.52
420 421 4.202274 GCCTCTCCATCTACTCCCTTTAAC 60.202 50.000 0.00 0.00 0.00 2.01
421 422 5.212745 CCTCTCCATCTACTCCCTTTAACT 58.787 45.833 0.00 0.00 0.00 2.24
422 423 5.663556 CCTCTCCATCTACTCCCTTTAACTT 59.336 44.000 0.00 0.00 0.00 2.66
423 424 6.183360 CCTCTCCATCTACTCCCTTTAACTTC 60.183 46.154 0.00 0.00 0.00 3.01
424 425 6.503944 TCTCCATCTACTCCCTTTAACTTCT 58.496 40.000 0.00 0.00 0.00 2.85
425 426 6.960542 TCTCCATCTACTCCCTTTAACTTCTT 59.039 38.462 0.00 0.00 0.00 2.52
426 427 7.124448 TCTCCATCTACTCCCTTTAACTTCTTC 59.876 40.741 0.00 0.00 0.00 2.87
427 428 6.960542 TCCATCTACTCCCTTTAACTTCTTCT 59.039 38.462 0.00 0.00 0.00 2.85
428 429 7.044798 CCATCTACTCCCTTTAACTTCTTCTG 58.955 42.308 0.00 0.00 0.00 3.02
429 430 6.607004 TCTACTCCCTTTAACTTCTTCTGG 57.393 41.667 0.00 0.00 0.00 3.86
431 432 3.330998 ACTCCCTTTAACTTCTTCTGGGG 59.669 47.826 0.00 0.00 34.27 4.96
432 433 3.587506 CTCCCTTTAACTTCTTCTGGGGA 59.412 47.826 0.00 0.00 39.17 4.81
433 434 3.587506 TCCCTTTAACTTCTTCTGGGGAG 59.412 47.826 0.00 0.00 36.92 4.30
434 435 3.348119 CCTTTAACTTCTTCTGGGGAGC 58.652 50.000 0.00 0.00 0.00 4.70
435 436 3.244911 CCTTTAACTTCTTCTGGGGAGCA 60.245 47.826 0.00 0.00 0.00 4.26
436 437 3.703001 TTAACTTCTTCTGGGGAGCAG 57.297 47.619 0.00 0.00 0.00 4.24
437 438 1.734655 AACTTCTTCTGGGGAGCAGA 58.265 50.000 0.00 0.00 0.00 4.26
438 439 1.274712 ACTTCTTCTGGGGAGCAGAG 58.725 55.000 0.00 0.00 0.00 3.35
439 440 0.107752 CTTCTTCTGGGGAGCAGAGC 60.108 60.000 0.00 0.00 0.00 4.09
440 441 0.546267 TTCTTCTGGGGAGCAGAGCT 60.546 55.000 0.00 0.00 43.88 4.09
448 449 3.854856 GAGCAGAGCTCGGATCCT 58.145 61.111 19.70 6.53 45.85 3.24
449 450 2.123409 GAGCAGAGCTCGGATCCTT 58.877 57.895 19.70 0.00 45.85 3.36
451 452 0.396974 AGCAGAGCTCGGATCCTTCT 60.397 55.000 18.66 3.53 30.62 2.85
453 454 1.397672 CAGAGCTCGGATCCTTCTCA 58.602 55.000 20.00 0.00 0.00 3.27
455 456 2.364970 CAGAGCTCGGATCCTTCTCAAT 59.635 50.000 20.00 4.88 0.00 2.57
456 457 3.571828 CAGAGCTCGGATCCTTCTCAATA 59.428 47.826 20.00 0.00 0.00 1.90
457 458 4.220382 CAGAGCTCGGATCCTTCTCAATAT 59.780 45.833 20.00 4.09 0.00 1.28
459 460 5.047377 AGAGCTCGGATCCTTCTCAATATTC 60.047 44.000 20.00 3.46 0.00 1.75
461 462 4.826556 CTCGGATCCTTCTCAATATTCCC 58.173 47.826 10.75 0.00 0.00 3.97
462 463 4.231273 TCGGATCCTTCTCAATATTCCCA 58.769 43.478 10.75 0.00 0.00 4.37
463 464 4.846367 TCGGATCCTTCTCAATATTCCCAT 59.154 41.667 10.75 0.00 0.00 4.00
464 465 5.046304 TCGGATCCTTCTCAATATTCCCATC 60.046 44.000 10.75 0.00 0.00 3.51
465 466 5.280164 CGGATCCTTCTCAATATTCCCATCA 60.280 44.000 10.75 0.00 0.00 3.07
466 467 6.546484 GGATCCTTCTCAATATTCCCATCAA 58.454 40.000 3.84 0.00 0.00 2.57
467 468 7.006509 GGATCCTTCTCAATATTCCCATCAAA 58.993 38.462 3.84 0.00 0.00 2.69
468 469 7.040132 GGATCCTTCTCAATATTCCCATCAAAC 60.040 40.741 3.84 0.00 0.00 2.93
469 470 6.730447 TCCTTCTCAATATTCCCATCAAACA 58.270 36.000 0.00 0.00 0.00 2.83
470 471 7.181361 TCCTTCTCAATATTCCCATCAAACAA 58.819 34.615 0.00 0.00 0.00 2.83
471 472 7.840716 TCCTTCTCAATATTCCCATCAAACAAT 59.159 33.333 0.00 0.00 0.00 2.71
472 473 8.139989 CCTTCTCAATATTCCCATCAAACAATC 58.860 37.037 0.00 0.00 0.00 2.67
474 475 7.124721 TCTCAATATTCCCATCAAACAATCCA 58.875 34.615 0.00 0.00 0.00 3.41
476 477 5.796424 ATATTCCCATCAAACAATCCAGC 57.204 39.130 0.00 0.00 0.00 4.85
477 478 1.851304 TCCCATCAAACAATCCAGCC 58.149 50.000 0.00 0.00 0.00 4.85
478 479 1.076841 TCCCATCAAACAATCCAGCCA 59.923 47.619 0.00 0.00 0.00 4.75
479 480 2.112998 CCCATCAAACAATCCAGCCAT 58.887 47.619 0.00 0.00 0.00 4.40
481 482 3.899360 CCCATCAAACAATCCAGCCATAT 59.101 43.478 0.00 0.00 0.00 1.78
482 483 4.345837 CCCATCAAACAATCCAGCCATATT 59.654 41.667 0.00 0.00 0.00 1.28
483 484 5.294356 CCATCAAACAATCCAGCCATATTG 58.706 41.667 0.00 0.00 38.71 1.90
484 485 5.294356 CATCAAACAATCCAGCCATATTGG 58.706 41.667 7.25 0.00 41.55 3.16
486 487 4.402155 TCAAACAATCCAGCCATATTGGAC 59.598 41.667 0.00 0.00 46.85 4.02
487 488 3.668141 ACAATCCAGCCATATTGGACA 57.332 42.857 0.00 0.00 46.85 4.02
488 489 3.290710 ACAATCCAGCCATATTGGACAC 58.709 45.455 0.00 0.00 46.85 3.67
489 490 3.053395 ACAATCCAGCCATATTGGACACT 60.053 43.478 0.00 0.00 46.85 3.55
490 491 3.498774 ATCCAGCCATATTGGACACTC 57.501 47.619 0.00 0.00 46.85 3.51
491 492 2.481441 TCCAGCCATATTGGACACTCT 58.519 47.619 0.00 0.00 40.96 3.24
492 493 2.435805 TCCAGCCATATTGGACACTCTC 59.564 50.000 0.00 0.00 40.96 3.20
493 494 2.486191 CCAGCCATATTGGACACTCTCC 60.486 54.545 0.00 0.00 40.96 3.71
495 496 3.643320 CAGCCATATTGGACACTCTCCTA 59.357 47.826 0.00 0.00 40.96 2.94
497 498 3.898123 GCCATATTGGACACTCTCCTAGA 59.102 47.826 0.00 0.00 40.96 2.43
498 499 4.021544 GCCATATTGGACACTCTCCTAGAG 60.022 50.000 2.39 2.39 43.53 2.43
499 500 5.389520 CCATATTGGACACTCTCCTAGAGA 58.610 45.833 10.80 0.12 41.72 3.10
500 501 5.835819 CCATATTGGACACTCTCCTAGAGAA 59.164 44.000 10.80 0.00 41.72 2.87
501 502 6.015519 CCATATTGGACACTCTCCTAGAGAAG 60.016 46.154 10.80 5.50 41.72 2.85
502 503 4.390129 TTGGACACTCTCCTAGAGAAGT 57.610 45.455 10.80 8.35 45.07 3.01
504 505 3.330998 TGGACACTCTCCTAGAGAAGTCA 59.669 47.826 22.76 13.50 45.07 3.41
506 507 4.157105 GGACACTCTCCTAGAGAAGTCAAC 59.843 50.000 22.76 11.71 45.07 3.18
507 508 4.730966 ACACTCTCCTAGAGAAGTCAACA 58.269 43.478 10.80 0.00 45.07 3.33
508 509 4.764823 ACACTCTCCTAGAGAAGTCAACAG 59.235 45.833 10.80 0.00 45.07 3.16
509 510 4.157656 CACTCTCCTAGAGAAGTCAACAGG 59.842 50.000 10.80 0.00 45.07 4.00
510 511 4.043561 ACTCTCCTAGAGAAGTCAACAGGA 59.956 45.833 10.80 0.00 45.07 3.86
511 512 4.999310 TCTCCTAGAGAAGTCAACAGGAA 58.001 43.478 0.00 0.00 35.59 3.36
513 514 4.742012 TCCTAGAGAAGTCAACAGGAACT 58.258 43.478 0.00 0.00 43.88 3.01
514 515 5.888901 TCCTAGAGAAGTCAACAGGAACTA 58.111 41.667 0.00 0.00 36.02 2.24
517 518 5.975693 AGAGAAGTCAACAGGAACTAGAG 57.024 43.478 0.00 0.00 36.02 2.43
518 519 5.636123 AGAGAAGTCAACAGGAACTAGAGA 58.364 41.667 0.00 0.00 36.02 3.10
519 520 5.475564 AGAGAAGTCAACAGGAACTAGAGAC 59.524 44.000 0.00 0.00 36.02 3.36
521 522 5.242838 AGAAGTCAACAGGAACTAGAGACAG 59.757 44.000 0.00 0.00 36.02 3.51
522 523 4.730966 AGTCAACAGGAACTAGAGACAGA 58.269 43.478 0.00 0.00 36.02 3.41
523 524 5.329399 AGTCAACAGGAACTAGAGACAGAT 58.671 41.667 0.00 0.00 36.02 2.90
524 525 5.777732 AGTCAACAGGAACTAGAGACAGATT 59.222 40.000 0.00 0.00 36.02 2.40
530 531 7.327214 ACAGGAACTAGAGACAGATTTGAATC 58.673 38.462 0.00 0.00 36.02 2.52
640 2434 2.493035 CCAACCCGTTAACCGTTAACT 58.507 47.619 24.74 9.65 42.53 2.24
651 2445 7.179410 CGTTAACCGTTAACTAACACAAGTTT 58.821 34.615 24.74 0.00 42.53 2.66
679 2479 2.970974 GCCTGTGAACCGAGCAAGC 61.971 63.158 0.00 0.00 0.00 4.01
687 2487 0.819259 AACCGAGCAAGCACACATGT 60.819 50.000 0.00 0.00 0.00 3.21
728 2531 1.464376 ATCTATGCTGGTCCGACGGG 61.464 60.000 15.25 0.00 0.00 5.28
807 2619 2.203800 TCTCATGTGCGTAATCGGTC 57.796 50.000 0.00 0.00 37.56 4.79
819 2686 0.398664 AATCGGTCGGGATTCCTCCT 60.399 55.000 2.01 0.00 41.74 3.69
850 2717 1.248785 GCTGTGACGGTGGACTCCTA 61.249 60.000 0.00 0.00 0.00 2.94
851 2718 1.475403 CTGTGACGGTGGACTCCTAT 58.525 55.000 0.00 0.00 0.00 2.57
852 2719 2.651455 CTGTGACGGTGGACTCCTATA 58.349 52.381 0.00 0.00 0.00 1.31
853 2720 3.223435 CTGTGACGGTGGACTCCTATAT 58.777 50.000 0.00 0.00 0.00 0.86
854 2721 4.395625 CTGTGACGGTGGACTCCTATATA 58.604 47.826 0.00 0.00 0.00 0.86
1372 3284 9.280456 ACGGAGGGAATATCATACCTAATAATT 57.720 33.333 0.00 0.00 32.42 1.40
1394 3307 2.214376 TCCATGTCTCCCGCAAAAAT 57.786 45.000 0.00 0.00 0.00 1.82
1401 3314 6.863126 CCATGTCTCCCGCAAAAATAATTATC 59.137 38.462 0.00 0.00 0.00 1.75
1445 3360 1.747355 GCAGTGAAATCCATGTGAGGG 59.253 52.381 0.00 0.00 0.00 4.30
1582 3497 2.029838 ACAAGCGCATCCTTCTTAGG 57.970 50.000 11.47 0.00 43.46 2.69
1885 3835 7.116805 GCTTCCAACAATTCAAAGAAATCGAAT 59.883 33.333 0.00 0.00 0.00 3.34
2003 3955 7.861629 TGAAAGGTCATGAATAGTATGGAGTT 58.138 34.615 0.00 0.00 0.00 3.01
2211 5550 7.342769 TGTCCGCTCTAAATGAACTCTATAA 57.657 36.000 0.00 0.00 0.00 0.98
2311 5674 4.094442 CCACGGTTTTATTCTGAGCTAACC 59.906 45.833 1.36 1.36 33.42 2.85
2387 5885 4.815846 ACAACCATTTGCAATTGAGGTTTC 59.184 37.500 20.17 0.00 37.26 2.78
2420 5919 1.271597 GCAACCACTCTCACCCTCAAT 60.272 52.381 0.00 0.00 0.00 2.57
2691 6204 1.303888 CATGGTCCAAGCAGCCACT 60.304 57.895 0.00 0.00 34.84 4.00
2697 6210 0.694771 TCCAAGCAGCCACTCTCATT 59.305 50.000 0.00 0.00 0.00 2.57
2794 6343 2.504244 GACCGTCGCCTCGAACAG 60.504 66.667 0.00 0.00 37.72 3.16
2837 6394 1.379044 CACCACTCCTCCATTGGGC 60.379 63.158 2.09 0.00 34.41 5.36
2876 6433 3.170360 GGAACCATTCCCCGAGAAC 57.830 57.895 0.00 0.00 44.30 3.01
2882 6441 2.434702 ACCATTCCCCGAGAACTGTATC 59.565 50.000 0.00 0.00 37.29 2.24
2972 6534 3.550437 AAGCAGCCATTAGGAGTAGTG 57.450 47.619 0.00 0.00 36.89 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.373716 GCGTTTCACGGGCTTCTATG 59.626 55.000 0.00 0.00 42.82 2.23
1 2 0.743345 GGCGTTTCACGGGCTTCTAT 60.743 55.000 0.00 0.00 42.82 1.98
2 3 1.375013 GGCGTTTCACGGGCTTCTA 60.375 57.895 0.00 0.00 42.82 2.10
5 6 3.284449 GTGGCGTTTCACGGGCTT 61.284 61.111 0.00 0.00 42.82 4.35
6 7 4.250305 AGTGGCGTTTCACGGGCT 62.250 61.111 0.00 0.00 42.82 5.19
7 8 3.723348 GAGTGGCGTTTCACGGGC 61.723 66.667 0.00 0.00 42.82 6.13
9 10 2.162338 TAGGGAGTGGCGTTTCACGG 62.162 60.000 0.00 0.00 42.82 4.94
11 12 1.653151 GATAGGGAGTGGCGTTTCAC 58.347 55.000 0.00 0.00 37.89 3.18
12 13 0.539986 GGATAGGGAGTGGCGTTTCA 59.460 55.000 0.00 0.00 0.00 2.69
13 14 0.179054 GGGATAGGGAGTGGCGTTTC 60.179 60.000 0.00 0.00 0.00 2.78
16 17 2.446036 GGGGATAGGGAGTGGCGT 60.446 66.667 0.00 0.00 0.00 5.68
17 18 2.122813 AGGGGATAGGGAGTGGCG 60.123 66.667 0.00 0.00 0.00 5.69
18 19 1.384643 ACAGGGGATAGGGAGTGGC 60.385 63.158 0.00 0.00 0.00 5.01
19 20 1.700042 GCACAGGGGATAGGGAGTGG 61.700 65.000 0.00 0.00 0.00 4.00
22 23 1.141858 GAAAGCACAGGGGATAGGGAG 59.858 57.143 0.00 0.00 0.00 4.30
23 24 1.213296 GAAAGCACAGGGGATAGGGA 58.787 55.000 0.00 0.00 0.00 4.20
26 27 3.881688 CAGAATGAAAGCACAGGGGATAG 59.118 47.826 0.00 0.00 39.69 2.08
27 28 3.523157 TCAGAATGAAAGCACAGGGGATA 59.477 43.478 0.00 0.00 45.97 2.59
28 29 2.309755 TCAGAATGAAAGCACAGGGGAT 59.690 45.455 0.00 0.00 45.97 3.85
29 30 1.704628 TCAGAATGAAAGCACAGGGGA 59.295 47.619 0.00 0.00 45.97 4.81
30 31 2.205022 TCAGAATGAAAGCACAGGGG 57.795 50.000 0.00 0.00 45.97 4.79
41 42 8.361889 ACACATTGATGTTTTGATTCAGAATGA 58.638 29.630 0.00 0.00 41.12 2.57
42 43 8.432359 CACACATTGATGTTTTGATTCAGAATG 58.568 33.333 0.00 0.00 39.39 2.67
45 46 7.041635 ACACACATTGATGTTTTGATTCAGA 57.958 32.000 8.69 0.00 39.39 3.27
47 48 6.040729 AGGACACACATTGATGTTTTGATTCA 59.959 34.615 8.69 0.00 39.39 2.57
48 49 6.364165 CAGGACACACATTGATGTTTTGATTC 59.636 38.462 8.69 0.01 39.39 2.52
49 50 6.218019 CAGGACACACATTGATGTTTTGATT 58.782 36.000 8.69 0.00 39.39 2.57
50 51 5.775686 CAGGACACACATTGATGTTTTGAT 58.224 37.500 8.69 0.00 39.39 2.57
51 52 4.499526 GCAGGACACACATTGATGTTTTGA 60.500 41.667 8.69 0.00 39.39 2.69
52 53 3.737266 GCAGGACACACATTGATGTTTTG 59.263 43.478 0.00 0.00 39.39 2.44
53 54 3.638160 AGCAGGACACACATTGATGTTTT 59.362 39.130 0.00 0.00 39.39 2.43
55 56 2.867624 AGCAGGACACACATTGATGTT 58.132 42.857 0.00 0.00 39.39 2.71
56 57 2.574006 AGCAGGACACACATTGATGT 57.426 45.000 0.00 0.00 42.84 3.06
57 58 5.993441 TCATATAGCAGGACACACATTGATG 59.007 40.000 0.00 0.00 0.00 3.07
58 59 6.178607 TCATATAGCAGGACACACATTGAT 57.821 37.500 0.00 0.00 0.00 2.57
59 60 5.612725 TCATATAGCAGGACACACATTGA 57.387 39.130 0.00 0.00 0.00 2.57
60 61 6.872628 AATCATATAGCAGGACACACATTG 57.127 37.500 0.00 0.00 0.00 2.82
61 62 7.056006 TGAAATCATATAGCAGGACACACATT 58.944 34.615 0.00 0.00 0.00 2.71
62 63 6.594744 TGAAATCATATAGCAGGACACACAT 58.405 36.000 0.00 0.00 0.00 3.21
64 65 6.536731 CTGAAATCATATAGCAGGACACAC 57.463 41.667 0.00 0.00 0.00 3.82
70 71 5.645497 GGTAAGCCTGAAATCATATAGCAGG 59.355 44.000 0.00 0.00 46.82 4.85
71 72 6.148480 GTGGTAAGCCTGAAATCATATAGCAG 59.852 42.308 0.00 0.00 35.27 4.24
72 73 5.997746 GTGGTAAGCCTGAAATCATATAGCA 59.002 40.000 0.00 0.00 35.27 3.49
73 74 6.148480 CAGTGGTAAGCCTGAAATCATATAGC 59.852 42.308 0.00 0.00 35.27 2.97
74 75 7.445121 TCAGTGGTAAGCCTGAAATCATATAG 58.555 38.462 0.00 0.00 34.88 1.31
76 77 6.252599 TCAGTGGTAAGCCTGAAATCATAT 57.747 37.500 0.00 0.00 34.88 1.78
79 80 4.365514 TTCAGTGGTAAGCCTGAAATCA 57.634 40.909 0.00 0.00 42.92 2.57
84 85 1.899814 ACGATTCAGTGGTAAGCCTGA 59.100 47.619 0.00 0.00 35.97 3.86
85 86 2.386661 ACGATTCAGTGGTAAGCCTG 57.613 50.000 0.00 0.00 35.27 4.85
86 87 2.038557 ACAACGATTCAGTGGTAAGCCT 59.961 45.455 0.00 0.00 35.27 4.58
87 88 2.423577 ACAACGATTCAGTGGTAAGCC 58.576 47.619 0.00 0.00 0.00 4.35
88 89 3.120304 GGAACAACGATTCAGTGGTAAGC 60.120 47.826 0.00 0.00 0.00 3.09
89 90 4.062293 TGGAACAACGATTCAGTGGTAAG 58.938 43.478 0.00 0.00 31.92 2.34
90 91 4.074627 TGGAACAACGATTCAGTGGTAA 57.925 40.909 0.00 0.00 31.92 2.85
91 92 3.755112 TGGAACAACGATTCAGTGGTA 57.245 42.857 0.00 0.00 31.92 3.25
92 93 2.631160 TGGAACAACGATTCAGTGGT 57.369 45.000 0.00 0.00 31.92 4.16
103 104 4.770261 GCCTTGTGCTGTTTTGGAACAAC 61.770 47.826 0.00 0.00 44.65 3.32
104 105 2.676463 GCCTTGTGCTGTTTTGGAACAA 60.676 45.455 0.00 0.00 44.65 2.83
105 106 1.134848 GCCTTGTGCTGTTTTGGAACA 60.135 47.619 0.00 0.00 43.23 3.18
106 107 1.570813 GCCTTGTGCTGTTTTGGAAC 58.429 50.000 0.00 0.00 36.87 3.62
107 108 0.463620 GGCCTTGTGCTGTTTTGGAA 59.536 50.000 0.00 0.00 40.92 3.53
108 109 0.685785 TGGCCTTGTGCTGTTTTGGA 60.686 50.000 3.32 0.00 40.92 3.53
109 110 0.530431 GTGGCCTTGTGCTGTTTTGG 60.530 55.000 3.32 0.00 40.92 3.28
110 111 0.530431 GGTGGCCTTGTGCTGTTTTG 60.530 55.000 3.32 0.00 40.92 2.44
111 112 0.975040 TGGTGGCCTTGTGCTGTTTT 60.975 50.000 3.32 0.00 40.92 2.43
112 113 1.381056 TGGTGGCCTTGTGCTGTTT 60.381 52.632 3.32 0.00 40.92 2.83
113 114 2.127232 GTGGTGGCCTTGTGCTGTT 61.127 57.895 3.32 0.00 40.92 3.16
114 115 2.519302 GTGGTGGCCTTGTGCTGT 60.519 61.111 3.32 0.00 40.92 4.40
117 118 2.203337 TGAGTGGTGGCCTTGTGC 60.203 61.111 3.32 0.00 40.16 4.57
118 119 1.601759 CCTGAGTGGTGGCCTTGTG 60.602 63.158 3.32 0.00 0.00 3.33
120 121 2.674380 GCCTGAGTGGTGGCCTTG 60.674 66.667 3.32 0.00 43.11 3.61
126 127 4.767255 GCGAGGGCCTGAGTGGTG 62.767 72.222 12.95 0.00 38.35 4.17
129 130 2.654079 AAGAGCGAGGGCCTGAGTG 61.654 63.158 12.95 0.00 41.24 3.51
132 133 2.604686 ACAAGAGCGAGGGCCTGA 60.605 61.111 12.95 0.00 41.24 3.86
133 134 2.125350 GACAAGAGCGAGGGCCTG 60.125 66.667 12.95 4.43 41.24 4.85
135 136 2.435059 GTGACAAGAGCGAGGGCC 60.435 66.667 0.00 0.00 41.24 5.80
137 138 3.059982 TGGTGACAAGAGCGAGGG 58.940 61.111 0.00 0.00 37.44 4.30
148 149 3.317150 GTTTAGGCATGCTTTTGGTGAC 58.683 45.455 18.92 0.00 0.00 3.67
149 150 2.298729 GGTTTAGGCATGCTTTTGGTGA 59.701 45.455 18.92 0.00 0.00 4.02
150 151 2.612721 GGGTTTAGGCATGCTTTTGGTG 60.613 50.000 18.92 0.00 0.00 4.17
151 152 1.623311 GGGTTTAGGCATGCTTTTGGT 59.377 47.619 18.92 0.00 0.00 3.67
152 153 1.066215 GGGGTTTAGGCATGCTTTTGG 60.066 52.381 18.92 0.00 0.00 3.28
153 154 1.622811 TGGGGTTTAGGCATGCTTTTG 59.377 47.619 18.92 0.00 0.00 2.44
154 155 2.022718 TGGGGTTTAGGCATGCTTTT 57.977 45.000 18.92 6.39 0.00 2.27
155 156 1.623311 GTTGGGGTTTAGGCATGCTTT 59.377 47.619 18.92 9.04 0.00 3.51
156 157 1.266178 GTTGGGGTTTAGGCATGCTT 58.734 50.000 18.92 13.45 0.00 3.91
157 158 0.614697 GGTTGGGGTTTAGGCATGCT 60.615 55.000 18.92 6.26 0.00 3.79
158 159 1.897423 GGTTGGGGTTTAGGCATGC 59.103 57.895 9.90 9.90 0.00 4.06
159 160 1.319614 CCGGTTGGGGTTTAGGCATG 61.320 60.000 0.00 0.00 0.00 4.06
160 161 1.000145 CCGGTTGGGGTTTAGGCAT 60.000 57.895 0.00 0.00 0.00 4.40
161 162 1.717038 TTCCGGTTGGGGTTTAGGCA 61.717 55.000 0.00 0.00 36.01 4.75
162 163 1.075305 TTCCGGTTGGGGTTTAGGC 59.925 57.895 0.00 0.00 36.01 3.93
164 165 0.402887 AGGTTCCGGTTGGGGTTTAG 59.597 55.000 0.00 0.00 36.01 1.85
166 167 1.152138 GAGGTTCCGGTTGGGGTTT 59.848 57.895 0.00 0.00 36.01 3.27
167 168 1.647334 TTGAGGTTCCGGTTGGGGTT 61.647 55.000 0.00 0.00 36.01 4.11
169 170 1.303317 CTTGAGGTTCCGGTTGGGG 60.303 63.158 0.00 0.00 36.01 4.96
170 171 0.605589 GACTTGAGGTTCCGGTTGGG 60.606 60.000 0.00 0.00 35.24 4.12
173 174 1.814248 GCAAGACTTGAGGTTCCGGTT 60.814 52.381 19.51 0.00 0.00 4.44
174 175 0.250338 GCAAGACTTGAGGTTCCGGT 60.250 55.000 19.51 0.00 0.00 5.28
175 176 1.291877 CGCAAGACTTGAGGTTCCGG 61.292 60.000 19.51 0.00 43.02 5.14
177 178 0.603975 AGCGCAAGACTTGAGGTTCC 60.604 55.000 19.51 3.01 37.96 3.62
178 179 0.793250 GAGCGCAAGACTTGAGGTTC 59.207 55.000 21.89 14.11 41.17 3.62
179 180 0.394565 AGAGCGCAAGACTTGAGGTT 59.605 50.000 21.89 9.81 41.17 3.50
180 181 0.037790 GAGAGCGCAAGACTTGAGGT 60.038 55.000 21.29 21.29 43.71 3.85
181 182 1.075425 CGAGAGCGCAAGACTTGAGG 61.075 60.000 19.51 10.42 43.02 3.86
182 183 0.387878 ACGAGAGCGCAAGACTTGAG 60.388 55.000 19.51 16.61 42.48 3.02
185 186 0.456995 GCTACGAGAGCGCAAGACTT 60.457 55.000 11.47 0.00 42.62 3.01
186 187 1.137825 GCTACGAGAGCGCAAGACT 59.862 57.895 11.47 2.77 42.62 3.24
187 188 3.681789 GCTACGAGAGCGCAAGAC 58.318 61.111 11.47 0.00 42.62 3.01
197 198 2.029828 AGACCAAACTGTCTGCTACGAG 60.030 50.000 0.00 0.00 43.80 4.18
198 199 1.961394 AGACCAAACTGTCTGCTACGA 59.039 47.619 0.00 0.00 43.80 3.43
200 201 2.689646 GGAGACCAAACTGTCTGCTAC 58.310 52.381 5.57 0.00 46.57 3.58
203 204 0.033504 TCGGAGACCAAACTGTCTGC 59.966 55.000 0.00 0.46 45.41 4.26
204 205 1.613925 TCTCGGAGACCAAACTGTCTG 59.386 52.381 2.97 0.00 45.41 3.51
206 207 1.887198 TCTCTCGGAGACCAAACTGTC 59.113 52.381 2.97 0.00 33.35 3.51
208 209 3.386768 TTTCTCTCGGAGACCAAACTG 57.613 47.619 2.97 0.00 38.51 3.16
209 210 4.127907 GTTTTTCTCTCGGAGACCAAACT 58.872 43.478 17.07 0.00 38.51 2.66
210 211 3.875134 TGTTTTTCTCTCGGAGACCAAAC 59.125 43.478 17.31 17.31 38.51 2.93
211 212 4.145365 TGTTTTTCTCTCGGAGACCAAA 57.855 40.909 2.97 3.67 38.51 3.28
212 213 3.830744 TGTTTTTCTCTCGGAGACCAA 57.169 42.857 2.97 0.00 38.51 3.67
213 214 3.830744 TTGTTTTTCTCTCGGAGACCA 57.169 42.857 2.97 0.00 38.51 4.02
214 215 4.334481 TGTTTTGTTTTTCTCTCGGAGACC 59.666 41.667 2.97 0.00 38.51 3.85
216 217 4.033587 CGTGTTTTGTTTTTCTCTCGGAGA 59.966 41.667 7.60 7.60 36.86 3.71
217 218 4.271687 CGTGTTTTGTTTTTCTCTCGGAG 58.728 43.478 0.00 0.00 0.00 4.63
218 219 3.064271 CCGTGTTTTGTTTTTCTCTCGGA 59.936 43.478 0.00 0.00 36.97 4.55
219 220 3.359654 CCGTGTTTTGTTTTTCTCTCGG 58.640 45.455 0.00 0.00 0.00 4.63
220 221 3.181504 ACCCGTGTTTTGTTTTTCTCTCG 60.182 43.478 0.00 0.00 0.00 4.04
221 222 4.102649 CACCCGTGTTTTGTTTTTCTCTC 58.897 43.478 0.00 0.00 0.00 3.20
222 223 3.759618 TCACCCGTGTTTTGTTTTTCTCT 59.240 39.130 0.00 0.00 0.00 3.10
230 231 1.107114 TTGCATCACCCGTGTTTTGT 58.893 45.000 0.00 0.00 0.00 2.83
231 232 1.066908 AGTTGCATCACCCGTGTTTTG 59.933 47.619 0.00 0.00 0.00 2.44
234 235 0.465460 ACAGTTGCATCACCCGTGTT 60.465 50.000 0.00 0.00 0.00 3.32
235 236 0.394938 TACAGTTGCATCACCCGTGT 59.605 50.000 0.00 0.00 0.00 4.49
236 237 0.796312 GTACAGTTGCATCACCCGTG 59.204 55.000 0.00 0.00 0.00 4.94
237 238 0.321298 GGTACAGTTGCATCACCCGT 60.321 55.000 0.00 0.00 0.00 5.28
238 239 0.321210 TGGTACAGTTGCATCACCCG 60.321 55.000 0.00 0.00 0.00 5.28
240 241 2.504367 ACTTGGTACAGTTGCATCACC 58.496 47.619 0.00 0.00 42.39 4.02
241 242 3.888934 CAACTTGGTACAGTTGCATCAC 58.111 45.455 11.78 0.00 42.39 3.06
250 251 5.239306 TCAAGAAATCTGCAACTTGGTACAG 59.761 40.000 0.00 0.00 42.39 2.74
251 252 5.129634 TCAAGAAATCTGCAACTTGGTACA 58.870 37.500 0.00 0.00 39.74 2.90
253 254 5.827797 AGTTCAAGAAATCTGCAACTTGGTA 59.172 36.000 0.00 0.00 39.74 3.25
254 255 4.646492 AGTTCAAGAAATCTGCAACTTGGT 59.354 37.500 0.00 0.00 39.74 3.67
255 256 4.980434 CAGTTCAAGAAATCTGCAACTTGG 59.020 41.667 0.00 0.00 39.74 3.61
256 257 5.585390 ACAGTTCAAGAAATCTGCAACTTG 58.415 37.500 0.00 0.00 40.37 3.16
259 260 5.429957 AGACAGTTCAAGAAATCTGCAAC 57.570 39.130 0.00 0.00 0.00 4.17
260 261 4.212004 CGAGACAGTTCAAGAAATCTGCAA 59.788 41.667 0.00 0.00 0.00 4.08
261 262 3.742882 CGAGACAGTTCAAGAAATCTGCA 59.257 43.478 0.00 0.00 0.00 4.41
262 263 3.124297 CCGAGACAGTTCAAGAAATCTGC 59.876 47.826 0.00 0.00 0.00 4.26
263 264 3.681897 CCCGAGACAGTTCAAGAAATCTG 59.318 47.826 0.00 0.00 0.00 2.90
264 265 3.866449 GCCCGAGACAGTTCAAGAAATCT 60.866 47.826 0.00 0.00 0.00 2.40
266 267 2.427506 GCCCGAGACAGTTCAAGAAAT 58.572 47.619 0.00 0.00 0.00 2.17
268 269 0.034896 GGCCCGAGACAGTTCAAGAA 59.965 55.000 0.00 0.00 0.00 2.52
270 271 1.738099 CGGCCCGAGACAGTTCAAG 60.738 63.158 0.00 0.00 0.00 3.02
271 272 2.342279 CGGCCCGAGACAGTTCAA 59.658 61.111 0.00 0.00 0.00 2.69
289 290 4.636435 AACTGTCGGGGTTGCGGG 62.636 66.667 0.00 0.00 0.00 6.13
290 291 3.047877 GAACTGTCGGGGTTGCGG 61.048 66.667 0.00 0.00 0.00 5.69
291 292 1.440938 TTTGAACTGTCGGGGTTGCG 61.441 55.000 0.00 0.00 0.00 4.85
292 293 0.958822 ATTTGAACTGTCGGGGTTGC 59.041 50.000 0.00 0.00 0.00 4.17
293 294 3.726291 AAATTTGAACTGTCGGGGTTG 57.274 42.857 0.00 0.00 0.00 3.77
294 295 5.855740 TTTAAATTTGAACTGTCGGGGTT 57.144 34.783 0.00 0.00 0.00 4.11
295 296 5.855740 TTTTAAATTTGAACTGTCGGGGT 57.144 34.783 0.00 0.00 0.00 4.95
309 310 7.221838 CGCCGGACACAATGAATATTTTAAATT 59.778 33.333 5.05 0.00 0.00 1.82
310 311 6.695278 CGCCGGACACAATGAATATTTTAAAT 59.305 34.615 5.05 0.00 0.00 1.40
311 312 6.030849 CGCCGGACACAATGAATATTTTAAA 58.969 36.000 5.05 0.00 0.00 1.52
312 313 5.449314 CCGCCGGACACAATGAATATTTTAA 60.449 40.000 5.05 0.00 0.00 1.52
314 315 3.181491 CCGCCGGACACAATGAATATTTT 60.181 43.478 5.05 0.00 0.00 1.82
315 316 2.357637 CCGCCGGACACAATGAATATTT 59.642 45.455 5.05 0.00 0.00 1.40
316 317 1.946768 CCGCCGGACACAATGAATATT 59.053 47.619 5.05 0.00 0.00 1.28
317 318 1.593196 CCGCCGGACACAATGAATAT 58.407 50.000 5.05 0.00 0.00 1.28
318 319 0.462937 CCCGCCGGACACAATGAATA 60.463 55.000 5.05 0.00 0.00 1.75
319 320 1.748879 CCCGCCGGACACAATGAAT 60.749 57.895 5.05 0.00 0.00 2.57
345 346 4.688966 GGATCGGCGGCATCCCTC 62.689 72.222 21.80 6.86 34.68 4.30
347 348 4.996434 CAGGATCGGCGGCATCCC 62.996 72.222 25.85 16.28 40.90 3.85
349 350 3.226429 TAGCAGGATCGGCGGCATC 62.226 63.158 10.53 10.99 36.08 3.91
350 351 3.231889 CTAGCAGGATCGGCGGCAT 62.232 63.158 10.53 1.21 36.08 4.40
351 352 3.916544 CTAGCAGGATCGGCGGCA 61.917 66.667 10.53 0.00 36.08 5.69
352 353 3.565910 CTCTAGCAGGATCGGCGGC 62.566 68.421 7.21 0.00 36.08 6.53
353 354 1.739338 AACTCTAGCAGGATCGGCGG 61.739 60.000 7.21 0.00 36.08 6.13
355 356 1.859383 GAAACTCTAGCAGGATCGGC 58.141 55.000 0.02 0.02 0.00 5.54
356 357 1.405821 ACGAAACTCTAGCAGGATCGG 59.594 52.381 15.79 0.00 38.16 4.18
357 358 2.853731 ACGAAACTCTAGCAGGATCG 57.146 50.000 0.00 12.64 39.17 3.69
358 359 4.929808 TCAAAACGAAACTCTAGCAGGATC 59.070 41.667 0.00 0.00 0.00 3.36
361 362 4.272504 TGTTCAAAACGAAACTCTAGCAGG 59.727 41.667 0.00 0.00 34.69 4.85
362 363 5.006746 AGTGTTCAAAACGAAACTCTAGCAG 59.993 40.000 0.00 0.00 34.69 4.24
364 365 5.405331 AGTGTTCAAAACGAAACTCTAGC 57.595 39.130 0.00 0.00 34.69 3.42
366 367 7.037438 ACAGTAGTGTTCAAAACGAAACTCTA 58.963 34.615 0.00 0.00 34.69 2.43
369 370 5.873164 AGACAGTAGTGTTCAAAACGAAACT 59.127 36.000 4.32 0.00 36.88 2.66
370 371 6.103222 AGACAGTAGTGTTCAAAACGAAAC 57.897 37.500 4.32 0.00 36.88 2.78
371 372 6.812656 TGTAGACAGTAGTGTTCAAAACGAAA 59.187 34.615 4.32 0.00 36.88 3.46
372 373 6.331845 TGTAGACAGTAGTGTTCAAAACGAA 58.668 36.000 4.32 0.00 36.88 3.85
373 374 5.893687 TGTAGACAGTAGTGTTCAAAACGA 58.106 37.500 4.32 0.00 36.88 3.85
374 375 5.332355 GCTGTAGACAGTAGTGTTCAAAACG 60.332 44.000 11.19 0.00 45.45 3.60
375 376 5.050295 GGCTGTAGACAGTAGTGTTCAAAAC 60.050 44.000 11.19 0.64 45.45 2.43
376 377 5.054477 GGCTGTAGACAGTAGTGTTCAAAA 58.946 41.667 11.19 0.00 45.45 2.44
377 378 4.344102 AGGCTGTAGACAGTAGTGTTCAAA 59.656 41.667 11.19 0.00 45.45 2.69
379 380 3.497332 AGGCTGTAGACAGTAGTGTTCA 58.503 45.455 11.19 4.64 45.45 3.18
380 381 3.759618 AGAGGCTGTAGACAGTAGTGTTC 59.240 47.826 11.19 0.00 45.45 3.18
381 382 3.759618 GAGAGGCTGTAGACAGTAGTGTT 59.240 47.826 11.19 0.00 45.45 3.32
382 383 3.349022 GAGAGGCTGTAGACAGTAGTGT 58.651 50.000 1.90 1.90 45.45 3.55
383 384 2.685897 GGAGAGGCTGTAGACAGTAGTG 59.314 54.545 11.19 0.00 45.45 2.74
384 385 2.309162 TGGAGAGGCTGTAGACAGTAGT 59.691 50.000 11.19 0.00 45.45 2.73
385 386 3.006112 TGGAGAGGCTGTAGACAGTAG 57.994 52.381 11.19 0.00 45.45 2.57
386 387 3.203263 AGATGGAGAGGCTGTAGACAGTA 59.797 47.826 11.19 0.00 45.45 2.74
387 388 2.024464 AGATGGAGAGGCTGTAGACAGT 60.024 50.000 11.19 0.00 45.45 3.55
388 389 2.665165 AGATGGAGAGGCTGTAGACAG 58.335 52.381 5.26 5.26 46.40 3.51
390 391 3.818773 GAGTAGATGGAGAGGCTGTAGAC 59.181 52.174 0.00 0.00 0.00 2.59
392 393 3.153919 GGAGTAGATGGAGAGGCTGTAG 58.846 54.545 0.00 0.00 0.00 2.74
394 395 1.412361 GGGAGTAGATGGAGAGGCTGT 60.412 57.143 0.00 0.00 0.00 4.40
395 396 1.133199 AGGGAGTAGATGGAGAGGCTG 60.133 57.143 0.00 0.00 0.00 4.85
396 397 1.240527 AGGGAGTAGATGGAGAGGCT 58.759 55.000 0.00 0.00 0.00 4.58
397 398 2.095604 AAGGGAGTAGATGGAGAGGC 57.904 55.000 0.00 0.00 0.00 4.70
398 399 5.212745 AGTTAAAGGGAGTAGATGGAGAGG 58.787 45.833 0.00 0.00 0.00 3.69
400 401 6.503944 AGAAGTTAAAGGGAGTAGATGGAGA 58.496 40.000 0.00 0.00 0.00 3.71
401 402 6.800072 AGAAGTTAAAGGGAGTAGATGGAG 57.200 41.667 0.00 0.00 0.00 3.86
405 406 6.157123 CCCAGAAGAAGTTAAAGGGAGTAGAT 59.843 42.308 0.00 0.00 36.96 1.98
406 407 5.484290 CCCAGAAGAAGTTAAAGGGAGTAGA 59.516 44.000 0.00 0.00 36.96 2.59
407 408 5.338463 CCCCAGAAGAAGTTAAAGGGAGTAG 60.338 48.000 0.00 0.00 36.96 2.57
408 409 4.534897 CCCCAGAAGAAGTTAAAGGGAGTA 59.465 45.833 0.00 0.00 36.96 2.59
409 410 3.330998 CCCCAGAAGAAGTTAAAGGGAGT 59.669 47.826 0.00 0.00 36.96 3.85
410 411 3.587506 TCCCCAGAAGAAGTTAAAGGGAG 59.412 47.826 0.00 0.00 37.40 4.30
411 412 3.587506 CTCCCCAGAAGAAGTTAAAGGGA 59.412 47.826 0.00 0.00 40.02 4.20
412 413 3.874193 GCTCCCCAGAAGAAGTTAAAGGG 60.874 52.174 0.00 0.00 34.41 3.95
413 414 3.244911 TGCTCCCCAGAAGAAGTTAAAGG 60.245 47.826 0.00 0.00 0.00 3.11
414 415 4.006319 CTGCTCCCCAGAAGAAGTTAAAG 58.994 47.826 0.00 0.00 44.64 1.85
415 416 4.021102 CTGCTCCCCAGAAGAAGTTAAA 57.979 45.455 0.00 0.00 44.64 1.52
432 433 0.396974 AGAAGGATCCGAGCTCTGCT 60.397 55.000 12.85 0.33 43.88 4.24
433 434 0.031994 GAGAAGGATCCGAGCTCTGC 59.968 60.000 12.85 0.00 0.00 4.26
434 435 1.397672 TGAGAAGGATCCGAGCTCTG 58.602 55.000 23.13 5.31 0.00 3.35
435 436 2.151502 TTGAGAAGGATCCGAGCTCT 57.848 50.000 23.13 16.45 0.00 4.09
436 437 4.799564 ATATTGAGAAGGATCCGAGCTC 57.200 45.455 18.79 18.79 0.00 4.09
437 438 4.020662 GGAATATTGAGAAGGATCCGAGCT 60.021 45.833 5.98 4.87 0.00 4.09
438 439 4.249661 GGAATATTGAGAAGGATCCGAGC 58.750 47.826 5.98 0.00 0.00 5.03
439 440 4.284490 TGGGAATATTGAGAAGGATCCGAG 59.716 45.833 5.98 0.00 0.00 4.63
440 441 4.231273 TGGGAATATTGAGAAGGATCCGA 58.769 43.478 5.98 0.00 0.00 4.55
441 442 4.623932 TGGGAATATTGAGAAGGATCCG 57.376 45.455 5.98 0.00 0.00 4.18
443 444 7.503566 TGTTTGATGGGAATATTGAGAAGGATC 59.496 37.037 0.00 0.00 0.00 3.36
444 445 7.356680 TGTTTGATGGGAATATTGAGAAGGAT 58.643 34.615 0.00 0.00 0.00 3.24
445 446 6.730447 TGTTTGATGGGAATATTGAGAAGGA 58.270 36.000 0.00 0.00 0.00 3.36
446 447 7.408756 TTGTTTGATGGGAATATTGAGAAGG 57.591 36.000 0.00 0.00 0.00 3.46
447 448 8.139989 GGATTGTTTGATGGGAATATTGAGAAG 58.860 37.037 0.00 0.00 0.00 2.85
448 449 7.618907 TGGATTGTTTGATGGGAATATTGAGAA 59.381 33.333 0.00 0.00 0.00 2.87
449 450 7.124721 TGGATTGTTTGATGGGAATATTGAGA 58.875 34.615 0.00 0.00 0.00 3.27
451 452 6.183360 GCTGGATTGTTTGATGGGAATATTGA 60.183 38.462 0.00 0.00 0.00 2.57
453 454 5.070847 GGCTGGATTGTTTGATGGGAATATT 59.929 40.000 0.00 0.00 0.00 1.28
455 456 3.960102 GGCTGGATTGTTTGATGGGAATA 59.040 43.478 0.00 0.00 0.00 1.75
456 457 2.767960 GGCTGGATTGTTTGATGGGAAT 59.232 45.455 0.00 0.00 0.00 3.01
457 458 2.178580 GGCTGGATTGTTTGATGGGAA 58.821 47.619 0.00 0.00 0.00 3.97
459 460 1.559368 TGGCTGGATTGTTTGATGGG 58.441 50.000 0.00 0.00 0.00 4.00
461 462 5.069383 TCCAATATGGCTGGATTGTTTGATG 59.931 40.000 0.00 0.00 38.07 3.07
462 463 5.069516 GTCCAATATGGCTGGATTGTTTGAT 59.930 40.000 0.00 0.00 44.69 2.57
463 464 4.402155 GTCCAATATGGCTGGATTGTTTGA 59.598 41.667 0.00 0.00 44.69 2.69
464 465 4.160065 TGTCCAATATGGCTGGATTGTTTG 59.840 41.667 0.00 0.00 44.69 2.93
465 466 4.160252 GTGTCCAATATGGCTGGATTGTTT 59.840 41.667 0.00 0.00 44.69 2.83
466 467 3.701040 GTGTCCAATATGGCTGGATTGTT 59.299 43.478 0.00 0.00 44.69 2.83
467 468 3.053395 AGTGTCCAATATGGCTGGATTGT 60.053 43.478 0.00 0.00 44.69 2.71
468 469 3.559069 AGTGTCCAATATGGCTGGATTG 58.441 45.455 0.00 0.00 44.69 2.67
469 470 3.461085 AGAGTGTCCAATATGGCTGGATT 59.539 43.478 0.00 0.00 44.69 3.01
470 471 3.051581 AGAGTGTCCAATATGGCTGGAT 58.948 45.455 0.00 0.00 44.69 3.41
471 472 2.435805 GAGAGTGTCCAATATGGCTGGA 59.564 50.000 0.00 0.00 40.77 3.86
472 473 2.486191 GGAGAGTGTCCAATATGGCTGG 60.486 54.545 0.34 0.00 46.10 4.85
484 485 4.762765 TGTTGACTTCTCTAGGAGAGTGTC 59.237 45.833 17.25 17.25 42.83 3.67
486 487 4.157656 CCTGTTGACTTCTCTAGGAGAGTG 59.842 50.000 3.52 1.67 42.83 3.51
487 488 4.043561 TCCTGTTGACTTCTCTAGGAGAGT 59.956 45.833 3.52 0.00 42.83 3.24
488 489 4.594970 TCCTGTTGACTTCTCTAGGAGAG 58.405 47.826 0.00 0.00 43.64 3.20
489 490 4.659529 TCCTGTTGACTTCTCTAGGAGA 57.340 45.455 0.00 0.00 36.86 3.71
490 491 4.770010 AGTTCCTGTTGACTTCTCTAGGAG 59.230 45.833 0.00 0.00 35.88 3.69
491 492 4.742012 AGTTCCTGTTGACTTCTCTAGGA 58.258 43.478 0.00 0.00 32.81 2.94
492 493 5.946972 TCTAGTTCCTGTTGACTTCTCTAGG 59.053 44.000 0.00 0.00 0.00 3.02
493 494 6.882140 TCTCTAGTTCCTGTTGACTTCTCTAG 59.118 42.308 0.00 0.00 0.00 2.43
495 496 5.475564 GTCTCTAGTTCCTGTTGACTTCTCT 59.524 44.000 0.00 0.00 0.00 3.10
497 498 5.141182 TGTCTCTAGTTCCTGTTGACTTCT 58.859 41.667 0.00 0.00 0.00 2.85
498 499 5.241949 TCTGTCTCTAGTTCCTGTTGACTTC 59.758 44.000 0.00 0.00 0.00 3.01
499 500 5.141182 TCTGTCTCTAGTTCCTGTTGACTT 58.859 41.667 0.00 0.00 0.00 3.01
500 501 4.730966 TCTGTCTCTAGTTCCTGTTGACT 58.269 43.478 0.00 0.00 0.00 3.41
501 502 5.652994 ATCTGTCTCTAGTTCCTGTTGAC 57.347 43.478 0.00 0.00 0.00 3.18
502 503 6.267699 TCAAATCTGTCTCTAGTTCCTGTTGA 59.732 38.462 0.00 0.00 0.00 3.18
504 505 6.672266 TCAAATCTGTCTCTAGTTCCTGTT 57.328 37.500 0.00 0.00 0.00 3.16
506 507 7.277539 GTGATTCAAATCTGTCTCTAGTTCCTG 59.722 40.741 4.50 0.00 36.39 3.86
507 508 7.327214 GTGATTCAAATCTGTCTCTAGTTCCT 58.673 38.462 4.50 0.00 36.39 3.36
508 509 6.254589 CGTGATTCAAATCTGTCTCTAGTTCC 59.745 42.308 4.50 0.00 36.39 3.62
509 510 6.254589 CCGTGATTCAAATCTGTCTCTAGTTC 59.745 42.308 4.50 0.00 36.39 3.01
510 511 6.071334 TCCGTGATTCAAATCTGTCTCTAGTT 60.071 38.462 4.50 0.00 36.39 2.24
511 512 5.419155 TCCGTGATTCAAATCTGTCTCTAGT 59.581 40.000 4.50 0.00 36.39 2.57
513 514 5.163509 CCTCCGTGATTCAAATCTGTCTCTA 60.164 44.000 4.50 0.00 36.39 2.43
514 515 4.382470 CCTCCGTGATTCAAATCTGTCTCT 60.382 45.833 4.50 0.00 36.39 3.10
517 518 2.352960 GCCTCCGTGATTCAAATCTGTC 59.647 50.000 4.50 0.00 36.39 3.51
518 519 2.026822 AGCCTCCGTGATTCAAATCTGT 60.027 45.455 4.50 0.00 36.39 3.41
519 520 2.636830 AGCCTCCGTGATTCAAATCTG 58.363 47.619 4.50 0.00 36.39 2.90
521 522 2.098117 CCAAGCCTCCGTGATTCAAATC 59.902 50.000 0.00 0.00 35.97 2.17
522 523 2.094675 CCAAGCCTCCGTGATTCAAAT 58.905 47.619 0.00 0.00 0.00 2.32
523 524 1.533625 CCAAGCCTCCGTGATTCAAA 58.466 50.000 0.00 0.00 0.00 2.69
524 525 0.960364 GCCAAGCCTCCGTGATTCAA 60.960 55.000 0.00 0.00 0.00 2.69
657 2451 1.891919 GCTCGGTTCACAGGCACAA 60.892 57.895 0.00 0.00 0.00 3.33
679 2479 2.198827 TGGGCCTTTCTACATGTGTG 57.801 50.000 9.11 1.17 0.00 3.82
687 2487 0.038166 CACCAGCTTGGGCCTTTCTA 59.962 55.000 4.53 0.00 43.37 2.10
708 2508 0.039074 CCGTCGGACCAGCATAGATC 60.039 60.000 4.91 0.00 0.00 2.75
711 2514 2.417516 CCCGTCGGACCAGCATAG 59.582 66.667 14.39 0.00 0.00 2.23
728 2531 2.222007 GCGTATTCGTTCGATATGTCGC 60.222 50.000 7.03 9.48 42.24 5.19
807 2619 1.470979 CGTACACAAGGAGGAATCCCG 60.471 57.143 0.00 0.00 37.58 5.14
819 2686 1.292061 GTCACAGCAACCGTACACAA 58.708 50.000 0.00 0.00 0.00 3.33
850 2717 7.229308 TCGGTCCTTGGCGAGTATATATATAT 58.771 38.462 10.10 10.10 0.00 0.86
851 2718 6.594744 TCGGTCCTTGGCGAGTATATATATA 58.405 40.000 0.12 0.00 0.00 0.86
852 2719 5.443283 TCGGTCCTTGGCGAGTATATATAT 58.557 41.667 0.12 0.00 0.00 0.86
853 2720 4.847198 TCGGTCCTTGGCGAGTATATATA 58.153 43.478 0.12 0.00 0.00 0.86
854 2721 3.693807 TCGGTCCTTGGCGAGTATATAT 58.306 45.455 0.12 0.00 0.00 0.86
1013 2906 6.716934 ACTGAATATCATACCTGACGTCTT 57.283 37.500 17.92 3.63 33.22 3.01
1372 3284 0.617935 TTTGCGGGAGACATGGATGA 59.382 50.000 0.00 0.00 0.00 2.92
1376 3288 4.654091 ATTATTTTTGCGGGAGACATGG 57.346 40.909 0.00 0.00 0.00 3.66
1382 3294 7.432869 TGAATGGATAATTATTTTTGCGGGAG 58.567 34.615 0.00 0.00 0.00 4.30
1401 3314 9.169592 TGCACAATATAGATGATACATGAATGG 57.830 33.333 0.00 0.00 0.00 3.16
1445 3360 8.542953 ACTTTTTCTTCGCATCTTGAATTTTTC 58.457 29.630 0.00 0.00 0.00 2.29
1516 3431 1.226888 GAGCATACGGTGTCGGTCC 60.227 63.158 0.00 0.00 41.39 4.46
1885 3835 4.650734 TCAGCACCATTGTGTCAAAGATA 58.349 39.130 0.00 0.00 44.65 1.98
2211 5550 0.473755 TGCACACATCACCCTTCAGT 59.526 50.000 0.00 0.00 0.00 3.41
2311 5674 4.130118 AGTGAACCTTCAAGTACAAGCAG 58.870 43.478 0.00 0.00 39.21 4.24
2396 5894 2.607892 GGTGAGAGTGGTTGCGCAC 61.608 63.158 11.12 5.37 0.00 5.34
2480 5985 4.103357 GCTGATAACGTGTGACGAGTAAT 58.897 43.478 2.62 0.00 46.05 1.89
2565 6072 3.072915 ACAAGAGTGTGTGGATTCATCCA 59.927 43.478 4.26 4.26 45.12 3.41
2580 6087 5.253330 TCAAACAAAGGTGAAGACAAGAGT 58.747 37.500 0.00 0.00 0.00 3.24
2691 6204 0.523072 GCAAAGAAGCGGCAATGAGA 59.477 50.000 1.45 0.00 0.00 3.27
2697 6210 0.536233 TACAAGGCAAAGAAGCGGCA 60.536 50.000 1.45 0.00 34.64 5.69
2837 6394 2.205022 TCAAACCAATGAGGAGCCAG 57.795 50.000 0.00 0.00 41.22 4.85
2882 6441 6.693315 ACGGGTGTTATTTGATTTCTATGG 57.307 37.500 0.00 0.00 0.00 2.74
2912 6471 5.968387 ATAGGATTGTGATCGACGTTTTC 57.032 39.130 0.00 0.00 32.84 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.