Multiple sequence alignment - TraesCS3A01G031100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G031100 chr3A 100.000 4264 0 0 1 4264 16930900 16926637 0.000000e+00 7875.0
1 TraesCS3A01G031100 chr3A 73.837 688 145 22 2557 3220 16996524 16997200 1.530000e-59 241.0
2 TraesCS3A01G031100 chr3A 78.771 358 59 8 2557 2906 17046940 17047288 1.540000e-54 224.0
3 TraesCS3A01G031100 chr3A 85.950 121 10 4 1367 1481 17066365 17066484 5.790000e-24 122.0
4 TraesCS3A01G031100 chr3A 85.586 111 12 3 1366 1473 16996360 16996469 3.480000e-21 113.0
5 TraesCS3A01G031100 chr3D 93.493 2090 109 11 2184 4264 10043450 10045521 0.000000e+00 3081.0
6 TraesCS3A01G031100 chr3D 91.925 743 39 11 1 727 10028738 10029475 0.000000e+00 1020.0
7 TraesCS3A01G031100 chr3D 94.867 565 19 4 738 1301 10029529 10030084 0.000000e+00 874.0
8 TraesCS3A01G031100 chr3D 89.546 507 25 8 1315 1821 10042588 10043066 6.060000e-173 617.0
9 TraesCS3A01G031100 chr3D 90.643 171 11 5 2022 2190 10043114 10043281 5.550000e-54 222.0
10 TraesCS3A01G031100 chr3D 87.838 74 5 4 1383 1455 27302094 27302164 2.730000e-12 84.2
11 TraesCS3A01G031100 chr3D 100.000 30 0 0 2002 2031 559645398 559645369 5.960000e-04 56.5
12 TraesCS3A01G031100 chr1B 86.667 210 25 3 1824 2031 3213793 3213585 3.320000e-56 230.0
13 TraesCS3A01G031100 chr1B 86.179 123 16 1 476 597 408087877 408087999 9.620000e-27 132.0
14 TraesCS3A01G031100 chr7D 85.167 209 29 2 1822 2029 562253042 562252835 3.340000e-51 213.0
15 TraesCS3A01G031100 chr7D 85.714 126 17 1 473 597 440078368 440078493 9.620000e-27 132.0
16 TraesCS3A01G031100 chr7D 84.286 140 16 5 1897 2031 636913790 636913652 9.620000e-27 132.0
17 TraesCS3A01G031100 chr7D 84.314 102 13 3 1931 2031 579308220 579308319 3.510000e-16 97.1
18 TraesCS3A01G031100 chr3B 91.667 120 8 2 3 120 27378710 27378591 9.490000e-37 165.0
19 TraesCS3A01G031100 chr3B 86.614 127 16 1 483 608 829323921 829323795 5.750000e-29 139.0
20 TraesCS3A01G031100 chr3B 86.517 89 9 2 1394 1479 45542372 45542460 1.260000e-15 95.3
21 TraesCS3A01G031100 chr4D 86.154 130 17 1 476 604 465674322 465674451 5.750000e-29 139.0
22 TraesCS3A01G031100 chr7A 88.496 113 12 1 496 607 624205402 624205514 7.440000e-28 135.0
23 TraesCS3A01G031100 chr7A 93.878 49 3 0 1983 2031 729237521 729237569 1.640000e-09 75.0
24 TraesCS3A01G031100 chr4B 84.173 139 20 2 475 612 97921164 97921027 2.670000e-27 134.0
25 TraesCS3A01G031100 chr6B 86.179 123 16 1 476 597 70160802 70160924 9.620000e-27 132.0
26 TraesCS3A01G031100 chr6B 89.333 75 8 0 2209 2283 462028764 462028690 1.260000e-15 95.3
27 TraesCS3A01G031100 chr2B 85.600 125 17 1 485 609 735375521 735375644 3.460000e-26 130.0
28 TraesCS3A01G031100 chr2B 90.141 71 5 2 2213 2282 47838904 47838973 1.630000e-14 91.6
29 TraesCS3A01G031100 chr5D 94.521 73 3 1 2213 2285 197147118 197147189 1.250000e-20 111.0
30 TraesCS3A01G031100 chr2A 89.412 85 8 1 2195 2278 713538515 713538431 5.830000e-19 106.0
31 TraesCS3A01G031100 chr2A 89.189 74 8 0 2209 2282 775976733 775976660 4.540000e-15 93.5
32 TraesCS3A01G031100 chr6A 90.667 75 7 0 2209 2283 420829791 420829865 2.710000e-17 100.0
33 TraesCS3A01G031100 chr1A 86.517 89 11 1 2192 2279 288687229 288687141 3.510000e-16 97.1
34 TraesCS3A01G031100 chr2D 90.141 71 7 0 2209 2279 2461036 2461106 4.540000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G031100 chr3A 16926637 16930900 4263 True 7875.000000 7875 100.000000 1 4264 1 chr3A.!!$R1 4263
1 TraesCS3A01G031100 chr3D 10042588 10045521 2933 False 1306.666667 3081 91.227333 1315 4264 3 chr3D.!!$F3 2949
2 TraesCS3A01G031100 chr3D 10028738 10030084 1346 False 947.000000 1020 93.396000 1 1301 2 chr3D.!!$F2 1300

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 977 0.179158 GAAGAGACGACTCGCTTCCC 60.179 60.0 9.21 0.0 43.80 3.97 F
1566 1629 0.036388 GCTGGATTGGTGAAGGACGA 60.036 55.0 0.00 0.0 0.00 4.20 F
1975 2038 0.106217 AATGCCCATTTACCGAGGGG 60.106 55.0 0.00 0.0 43.04 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 2019 0.106217 CCCCTCGGTAAATGGGCATT 60.106 55.0 0.00 0.0 39.61 3.56 R
2957 3201 0.389391 ATGAACCAGGAGTATCGCCG 59.611 55.0 0.00 0.0 34.37 6.46 R
3930 4179 0.967662 GTAGGACGGAGCTTATCCCC 59.032 60.0 7.94 0.0 46.50 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 8.314751 TCCTACATGGAATTAAGCTAAGCTATC 58.685 37.037 0.00 0.00 42.94 2.08
58 59 8.930846 ACATGGAATTAAGCTAAGCTATCATT 57.069 30.769 0.00 0.00 38.25 2.57
89 90 3.591196 TGCCTTAAATTCACCACATGC 57.409 42.857 0.00 0.00 0.00 4.06
108 109 5.470098 ACATGCAACTGTTACCTAAGACTTG 59.530 40.000 0.00 0.00 0.00 3.16
140 141 2.264794 GCGAAGGGCGAAGGAAGA 59.735 61.111 0.00 0.00 44.57 2.87
150 151 1.396301 GCGAAGGAAGAAGACATGCAG 59.604 52.381 0.00 0.00 0.00 4.41
154 155 4.573900 GAAGGAAGAAGACATGCAGAGAA 58.426 43.478 0.00 0.00 0.00 2.87
169 170 5.788450 TGCAGAGAAACCTTTTTGAAACAA 58.212 33.333 0.00 0.00 0.00 2.83
172 173 7.064490 TGCAGAGAAACCTTTTTGAAACAATTC 59.936 33.333 0.00 0.00 36.04 2.17
175 176 8.531146 AGAGAAACCTTTTTGAAACAATTCTGA 58.469 29.630 0.00 0.00 36.48 3.27
182 183 9.848172 CCTTTTTGAAACAATTCTGAAATTACG 57.152 29.630 0.00 0.00 36.48 3.18
183 184 9.848172 CTTTTTGAAACAATTCTGAAATTACGG 57.152 29.630 0.00 0.00 36.48 4.02
212 213 7.043961 TGTGTGCAAAATTACCAATCAACTA 57.956 32.000 0.00 0.00 0.00 2.24
215 216 6.146898 GTGCAAAATTACCAATCAACTACGT 58.853 36.000 0.00 0.00 0.00 3.57
220 221 1.144969 ACCAATCAACTACGTGTGCG 58.855 50.000 0.00 0.00 44.93 5.34
285 286 5.049828 TCCATATCACTTGTTGCTCATACG 58.950 41.667 0.00 0.00 0.00 3.06
434 435 7.069085 CCATCTTGAATCCTGGTATGTTTTCAT 59.931 37.037 0.00 0.00 43.60 2.57
472 473 6.593807 TCAGTTAGTGCCTTAACCTACAAAA 58.406 36.000 4.39 0.00 34.75 2.44
489 490 6.471519 CCTACAAAAGAAGTATTACCTCGTCG 59.528 42.308 0.00 0.00 0.00 5.12
507 508 7.147949 ACCTCGTCGGAAGATTCTTATTTTAGA 60.148 37.037 0.00 0.00 45.19 2.10
613 614 5.991328 ACGGAGTGAATATTTAGCATGTG 57.009 39.130 0.00 0.00 42.51 3.21
619 621 9.489084 GGAGTGAATATTTAGCATGTGTATGTA 57.511 33.333 0.00 0.00 36.65 2.29
621 623 9.830975 AGTGAATATTTAGCATGTGTATGTACA 57.169 29.630 0.00 0.00 36.65 2.90
634 636 7.764695 TGTGTATGTACATGTGTATGCTAAC 57.235 36.000 18.81 4.99 38.63 2.34
755 817 3.097614 AGGGTTAGTGTGCGTCTTCTAT 58.902 45.455 0.00 0.00 0.00 1.98
762 824 2.159627 GTGTGCGTCTTCTATTTGGGTG 59.840 50.000 0.00 0.00 0.00 4.61
772 834 3.393687 TCTATTTGGGTGTATCTGGGCT 58.606 45.455 0.00 0.00 0.00 5.19
773 835 2.442236 ATTTGGGTGTATCTGGGCTG 57.558 50.000 0.00 0.00 0.00 4.85
774 836 1.072266 TTTGGGTGTATCTGGGCTGT 58.928 50.000 0.00 0.00 0.00 4.40
775 837 1.072266 TTGGGTGTATCTGGGCTGTT 58.928 50.000 0.00 0.00 0.00 3.16
776 838 0.327924 TGGGTGTATCTGGGCTGTTG 59.672 55.000 0.00 0.00 0.00 3.33
777 839 0.394352 GGGTGTATCTGGGCTGTTGG 60.394 60.000 0.00 0.00 0.00 3.77
778 840 1.032114 GGTGTATCTGGGCTGTTGGC 61.032 60.000 0.00 0.00 40.90 4.52
803 865 1.971695 CTCGGCCCACCTTTTGACC 60.972 63.158 0.00 0.00 0.00 4.02
833 895 3.059800 CGTTTCCTTCTCGTTTTGTCTCC 60.060 47.826 0.00 0.00 0.00 3.71
853 916 0.385390 AAATTTCATCGCCGCCATCC 59.615 50.000 0.00 0.00 0.00 3.51
914 977 0.179158 GAAGAGACGACTCGCTTCCC 60.179 60.000 9.21 0.00 43.80 3.97
922 985 4.680237 CTCGCTTCCCGTGGTGCA 62.680 66.667 0.00 0.00 38.35 4.57
1129 1192 0.252479 CCTTGAGTGCCTCATCTGCT 59.748 55.000 5.83 0.00 40.39 4.24
1130 1193 1.654317 CTTGAGTGCCTCATCTGCTC 58.346 55.000 5.83 0.00 40.39 4.26
1179 1242 3.081804 GGTAACCCCTGTGTTTGATCTG 58.918 50.000 0.00 0.00 0.00 2.90
1210 1273 2.690497 CTCAAATCCTACGAGCTCCTGA 59.310 50.000 8.47 0.00 0.00 3.86
1239 1302 5.406780 CGATAGCACCAATGGATCTAAAGAC 59.593 44.000 6.16 0.85 0.00 3.01
1240 1303 4.851639 AGCACCAATGGATCTAAAGACT 57.148 40.909 6.16 0.00 0.00 3.24
1355 1418 4.155280 GTGCCTAGTTTAATTTTCTCGCCA 59.845 41.667 0.00 0.00 0.00 5.69
1362 1425 6.569780 AGTTTAATTTTCTCGCCAAACTGTT 58.430 32.000 0.00 0.00 35.51 3.16
1364 1427 4.647424 AATTTTCTCGCCAAACTGTTGA 57.353 36.364 0.00 0.00 36.83 3.18
1438 1501 4.216902 TGCAAGTCAATGTTGAATCTCTGG 59.783 41.667 0.00 0.00 39.21 3.86
1467 1530 2.813172 ACGACATCACATCAAATGCACA 59.187 40.909 0.00 0.00 0.00 4.57
1468 1531 3.165890 CGACATCACATCAAATGCACAC 58.834 45.455 0.00 0.00 0.00 3.82
1479 1542 5.781210 TCAAATGCACACATTAGTCCAAA 57.219 34.783 0.00 0.00 45.90 3.28
1483 1546 6.594788 AATGCACACATTAGTCCAAATTCT 57.405 33.333 0.00 0.00 44.78 2.40
1485 1548 5.105635 ATGCACACATTAGTCCAAATTCTGG 60.106 40.000 0.00 1.49 39.07 3.86
1512 1575 1.064060 GTGATTACCAATGCGTCTGGC 59.936 52.381 6.95 0.00 43.96 4.85
1530 1593 4.521256 TCTGGCGCCTAGTTAAATTTTGTT 59.479 37.500 29.70 0.00 0.00 2.83
1548 1611 3.146066 TGTTGTCAAACTGTAGGATGGC 58.854 45.455 0.00 0.00 37.19 4.40
1551 1614 2.290260 TGTCAAACTGTAGGATGGCTGG 60.290 50.000 0.00 0.00 0.00 4.85
1552 1615 2.027192 GTCAAACTGTAGGATGGCTGGA 60.027 50.000 0.00 0.00 0.00 3.86
1554 1617 3.266772 TCAAACTGTAGGATGGCTGGATT 59.733 43.478 0.00 0.00 0.00 3.01
1555 1618 3.287867 AACTGTAGGATGGCTGGATTG 57.712 47.619 0.00 0.00 0.00 2.67
1556 1619 1.492176 ACTGTAGGATGGCTGGATTGG 59.508 52.381 0.00 0.00 0.00 3.16
1557 1620 1.492176 CTGTAGGATGGCTGGATTGGT 59.508 52.381 0.00 0.00 0.00 3.67
1558 1621 1.212688 TGTAGGATGGCTGGATTGGTG 59.787 52.381 0.00 0.00 0.00 4.17
1559 1622 1.490490 GTAGGATGGCTGGATTGGTGA 59.510 52.381 0.00 0.00 0.00 4.02
1560 1623 1.002069 AGGATGGCTGGATTGGTGAA 58.998 50.000 0.00 0.00 0.00 3.18
1561 1624 1.064166 AGGATGGCTGGATTGGTGAAG 60.064 52.381 0.00 0.00 0.00 3.02
1562 1625 1.396653 GATGGCTGGATTGGTGAAGG 58.603 55.000 0.00 0.00 0.00 3.46
1563 1626 1.002069 ATGGCTGGATTGGTGAAGGA 58.998 50.000 0.00 0.00 0.00 3.36
1564 1627 0.038166 TGGCTGGATTGGTGAAGGAC 59.962 55.000 0.00 0.00 0.00 3.85
1565 1628 1.026718 GGCTGGATTGGTGAAGGACG 61.027 60.000 0.00 0.00 0.00 4.79
1566 1629 0.036388 GCTGGATTGGTGAAGGACGA 60.036 55.000 0.00 0.00 0.00 4.20
1567 1630 1.726853 CTGGATTGGTGAAGGACGAC 58.273 55.000 0.00 0.00 0.00 4.34
1568 1631 1.001974 CTGGATTGGTGAAGGACGACA 59.998 52.381 0.00 0.00 0.00 4.35
1569 1632 1.628340 TGGATTGGTGAAGGACGACAT 59.372 47.619 0.00 0.00 0.00 3.06
1570 1633 2.280628 GGATTGGTGAAGGACGACATC 58.719 52.381 0.00 0.00 0.00 3.06
1571 1634 2.354704 GGATTGGTGAAGGACGACATCA 60.355 50.000 0.00 0.00 0.00 3.07
1572 1635 2.163818 TTGGTGAAGGACGACATCAC 57.836 50.000 12.27 12.27 42.08 3.06
1573 1636 1.044611 TGGTGAAGGACGACATCACA 58.955 50.000 18.84 7.67 44.05 3.58
1574 1637 1.623311 TGGTGAAGGACGACATCACAT 59.377 47.619 18.84 0.00 44.05 3.21
1575 1638 2.271800 GGTGAAGGACGACATCACATC 58.728 52.381 18.84 5.15 44.05 3.06
1604 1667 7.692088 TGCATGTTTTTGGACTTGTTATTTTG 58.308 30.769 0.00 0.00 0.00 2.44
1613 1676 6.950545 TGGACTTGTTATTTTGTAGTTGACG 58.049 36.000 0.00 0.00 0.00 4.35
1618 1681 7.279313 ACTTGTTATTTTGTAGTTGACGTGTCT 59.721 33.333 0.00 0.00 0.00 3.41
1639 1702 3.256558 TGAAGAACGACATCTGATGCAG 58.743 45.455 17.24 13.30 0.00 4.41
1663 1726 7.498900 CAGACATTATAGTCCAAATGCCTAACA 59.501 37.037 0.00 0.00 39.34 2.41
1664 1727 8.052748 AGACATTATAGTCCAAATGCCTAACAA 58.947 33.333 0.00 0.00 39.34 2.83
1686 1749 6.482973 ACAAAAATTTGATCGGTGCATTTTCT 59.517 30.769 12.54 0.00 40.55 2.52
1710 1773 6.398095 TGCTATATATGTTGTCTTCCATCCG 58.602 40.000 0.00 0.00 0.00 4.18
1720 1783 3.130516 TGTCTTCCATCCGTGTATGAGTC 59.869 47.826 0.00 0.00 0.00 3.36
1731 1794 4.635765 CCGTGTATGAGTCCATTCAATTGT 59.364 41.667 5.13 0.00 32.96 2.71
1732 1795 5.815222 CCGTGTATGAGTCCATTCAATTGTA 59.185 40.000 5.13 0.00 32.96 2.41
1733 1796 6.315144 CCGTGTATGAGTCCATTCAATTGTAA 59.685 38.462 5.13 0.00 32.96 2.41
1734 1797 7.148323 CCGTGTATGAGTCCATTCAATTGTAAA 60.148 37.037 5.13 0.00 32.96 2.01
1735 1798 8.397906 CGTGTATGAGTCCATTCAATTGTAAAT 58.602 33.333 5.13 0.00 32.96 1.40
1821 1884 5.989551 ATTTTCCAACATTCACAAGTTGC 57.010 34.783 1.81 0.00 42.77 4.17
1822 1885 3.451141 TTCCAACATTCACAAGTTGCC 57.549 42.857 1.81 0.00 42.77 4.52
1823 1886 2.665165 TCCAACATTCACAAGTTGCCT 58.335 42.857 1.81 0.00 42.77 4.75
1824 1887 3.030291 TCCAACATTCACAAGTTGCCTT 58.970 40.909 1.81 0.00 42.77 4.35
1825 1888 3.450457 TCCAACATTCACAAGTTGCCTTT 59.550 39.130 1.81 0.00 42.77 3.11
1826 1889 4.081198 TCCAACATTCACAAGTTGCCTTTT 60.081 37.500 1.81 0.00 42.77 2.27
1827 1890 4.034279 CCAACATTCACAAGTTGCCTTTTG 59.966 41.667 1.81 0.00 42.77 2.44
1829 1892 5.083533 ACATTCACAAGTTGCCTTTTGAA 57.916 34.783 1.81 5.59 46.08 2.69
1830 1893 4.869861 ACATTCACAAGTTGCCTTTTGAAC 59.130 37.500 1.81 0.00 45.31 3.18
1831 1894 4.527509 TTCACAAGTTGCCTTTTGAACA 57.472 36.364 1.81 0.00 40.61 3.18
1832 1895 4.734398 TCACAAGTTGCCTTTTGAACAT 57.266 36.364 1.81 0.00 35.11 2.71
1833 1896 4.431809 TCACAAGTTGCCTTTTGAACATG 58.568 39.130 1.81 0.00 35.11 3.21
1834 1897 3.556775 CACAAGTTGCCTTTTGAACATGG 59.443 43.478 1.81 0.00 31.34 3.66
1836 1899 4.081198 ACAAGTTGCCTTTTGAACATGGAA 60.081 37.500 1.81 0.00 0.00 3.53
1837 1900 4.751767 AGTTGCCTTTTGAACATGGAAA 57.248 36.364 0.00 0.00 0.00 3.13
1838 1901 5.294734 AGTTGCCTTTTGAACATGGAAAT 57.705 34.783 0.00 0.00 0.00 2.17
1839 1902 6.418057 AGTTGCCTTTTGAACATGGAAATA 57.582 33.333 0.00 0.00 0.00 1.40
1840 1903 6.458210 AGTTGCCTTTTGAACATGGAAATAG 58.542 36.000 0.00 0.00 0.00 1.73
1841 1904 5.404466 TGCCTTTTGAACATGGAAATAGG 57.596 39.130 0.00 3.84 0.00 2.57
1842 1905 4.837860 TGCCTTTTGAACATGGAAATAGGT 59.162 37.500 0.00 0.00 0.00 3.08
1843 1906 5.306678 TGCCTTTTGAACATGGAAATAGGTT 59.693 36.000 0.00 0.00 0.00 3.50
1844 1907 5.639082 GCCTTTTGAACATGGAAATAGGTTG 59.361 40.000 0.00 0.00 0.00 3.77
1845 1908 6.741240 GCCTTTTGAACATGGAAATAGGTTGT 60.741 38.462 0.00 0.00 0.00 3.32
1847 1910 8.364142 CCTTTTGAACATGGAAATAGGTTGTTA 58.636 33.333 0.00 0.00 0.00 2.41
1848 1911 9.191995 CTTTTGAACATGGAAATAGGTTGTTAC 57.808 33.333 0.00 0.00 0.00 2.50
1849 1912 7.825331 TTGAACATGGAAATAGGTTGTTACA 57.175 32.000 0.00 0.00 0.00 2.41
1850 1913 7.825331 TGAACATGGAAATAGGTTGTTACAA 57.175 32.000 0.00 0.00 0.00 2.41
1851 1914 7.653647 TGAACATGGAAATAGGTTGTTACAAC 58.346 34.615 18.85 18.85 0.00 3.32
1852 1915 6.584185 ACATGGAAATAGGTTGTTACAACC 57.416 37.500 32.97 32.97 40.58 3.77
1853 1916 6.071984 ACATGGAAATAGGTTGTTACAACCA 58.928 36.000 38.21 27.29 42.69 3.67
1854 1917 6.723977 ACATGGAAATAGGTTGTTACAACCAT 59.276 34.615 38.21 28.02 42.69 3.55
1855 1918 6.582677 TGGAAATAGGTTGTTACAACCATG 57.417 37.500 38.21 0.00 42.69 3.66
1856 1919 5.047660 TGGAAATAGGTTGTTACAACCATGC 60.048 40.000 38.21 27.54 42.69 4.06
1857 1920 4.695217 AATAGGTTGTTACAACCATGCG 57.305 40.909 38.21 0.00 42.69 4.73
1858 1921 2.264005 AGGTTGTTACAACCATGCGA 57.736 45.000 38.21 0.00 42.69 5.10
1859 1922 2.151202 AGGTTGTTACAACCATGCGAG 58.849 47.619 38.21 0.00 42.69 5.03
1864 1927 4.260139 TGTTACAACCATGCGAGAACTA 57.740 40.909 0.00 0.00 0.00 2.24
1865 1928 4.633175 TGTTACAACCATGCGAGAACTAA 58.367 39.130 0.00 0.00 0.00 2.24
1866 1929 4.449743 TGTTACAACCATGCGAGAACTAAC 59.550 41.667 0.00 0.00 0.00 2.34
1868 1931 4.530710 ACAACCATGCGAGAACTAACTA 57.469 40.909 0.00 0.00 0.00 2.24
1871 1934 6.817184 ACAACCATGCGAGAACTAACTATAT 58.183 36.000 0.00 0.00 0.00 0.86
1872 1935 7.272978 ACAACCATGCGAGAACTAACTATATT 58.727 34.615 0.00 0.00 0.00 1.28
1873 1936 7.769044 ACAACCATGCGAGAACTAACTATATTT 59.231 33.333 0.00 0.00 0.00 1.40
1874 1937 9.256477 CAACCATGCGAGAACTAACTATATTTA 57.744 33.333 0.00 0.00 0.00 1.40
1893 1956 5.811399 TTTAAATACCTGAGATGTTGCCG 57.189 39.130 0.00 0.00 0.00 5.69
1894 1957 3.350219 AAATACCTGAGATGTTGCCGT 57.650 42.857 0.00 0.00 0.00 5.68
1895 1958 2.315925 ATACCTGAGATGTTGCCGTG 57.684 50.000 0.00 0.00 0.00 4.94
1896 1959 0.391130 TACCTGAGATGTTGCCGTGC 60.391 55.000 0.00 0.00 0.00 5.34
1897 1960 1.376424 CCTGAGATGTTGCCGTGCT 60.376 57.895 0.00 0.00 0.00 4.40
1898 1961 0.957395 CCTGAGATGTTGCCGTGCTT 60.957 55.000 0.00 0.00 0.00 3.91
1899 1962 0.877071 CTGAGATGTTGCCGTGCTTT 59.123 50.000 0.00 0.00 0.00 3.51
1900 1963 2.076100 CTGAGATGTTGCCGTGCTTTA 58.924 47.619 0.00 0.00 0.00 1.85
1901 1964 2.679837 CTGAGATGTTGCCGTGCTTTAT 59.320 45.455 0.00 0.00 0.00 1.40
1902 1965 3.081061 TGAGATGTTGCCGTGCTTTATT 58.919 40.909 0.00 0.00 0.00 1.40
1903 1966 3.119884 TGAGATGTTGCCGTGCTTTATTG 60.120 43.478 0.00 0.00 0.00 1.90
1904 1967 2.819608 AGATGTTGCCGTGCTTTATTGT 59.180 40.909 0.00 0.00 0.00 2.71
1905 1968 4.006989 AGATGTTGCCGTGCTTTATTGTA 58.993 39.130 0.00 0.00 0.00 2.41
1906 1969 3.546002 TGTTGCCGTGCTTTATTGTAC 57.454 42.857 0.00 0.00 0.00 2.90
1907 1970 2.879026 TGTTGCCGTGCTTTATTGTACA 59.121 40.909 0.00 0.00 0.00 2.90
1908 1971 3.504134 TGTTGCCGTGCTTTATTGTACAT 59.496 39.130 0.00 0.00 0.00 2.29
1909 1972 4.022762 TGTTGCCGTGCTTTATTGTACATT 60.023 37.500 0.00 0.00 0.00 2.71
1910 1973 4.090138 TGCCGTGCTTTATTGTACATTG 57.910 40.909 0.00 0.00 0.00 2.82
1911 1974 3.753797 TGCCGTGCTTTATTGTACATTGA 59.246 39.130 0.00 0.00 0.00 2.57
1912 1975 4.142708 TGCCGTGCTTTATTGTACATTGAG 60.143 41.667 0.00 0.00 0.00 3.02
1913 1976 4.342772 CCGTGCTTTATTGTACATTGAGC 58.657 43.478 15.39 15.39 0.00 4.26
1914 1977 4.021822 CGTGCTTTATTGTACATTGAGCG 58.978 43.478 16.37 5.07 0.00 5.03
1915 1978 4.435518 CGTGCTTTATTGTACATTGAGCGT 60.436 41.667 16.37 0.00 0.00 5.07
1916 1979 5.390613 GTGCTTTATTGTACATTGAGCGTT 58.609 37.500 16.37 0.00 0.00 4.84
1917 1980 5.856455 GTGCTTTATTGTACATTGAGCGTTT 59.144 36.000 16.37 0.00 0.00 3.60
1918 1981 7.018826 GTGCTTTATTGTACATTGAGCGTTTA 58.981 34.615 16.37 4.08 0.00 2.01
1919 1982 7.535940 GTGCTTTATTGTACATTGAGCGTTTAA 59.464 33.333 16.37 0.00 0.00 1.52
1920 1983 8.076781 TGCTTTATTGTACATTGAGCGTTTAAA 58.923 29.630 16.37 0.00 0.00 1.52
1921 1984 9.072294 GCTTTATTGTACATTGAGCGTTTAAAT 57.928 29.630 0.00 0.00 0.00 1.40
1969 2032 6.625873 TTTTGTTTGAAATGCCCATTTACC 57.374 33.333 6.25 0.00 40.77 2.85
1970 2033 3.919216 TGTTTGAAATGCCCATTTACCG 58.081 40.909 6.25 0.00 40.77 4.02
1971 2034 3.574396 TGTTTGAAATGCCCATTTACCGA 59.426 39.130 6.25 0.00 40.77 4.69
1972 2035 4.173256 GTTTGAAATGCCCATTTACCGAG 58.827 43.478 6.25 0.00 40.77 4.63
1973 2036 2.374184 TGAAATGCCCATTTACCGAGG 58.626 47.619 6.25 0.00 40.77 4.63
1974 2037 1.681264 GAAATGCCCATTTACCGAGGG 59.319 52.381 6.25 0.00 45.68 4.30
1975 2038 0.106217 AATGCCCATTTACCGAGGGG 60.106 55.000 0.00 0.00 43.04 4.79
1977 2040 3.003230 CCCATTTACCGAGGGGCA 58.997 61.111 0.00 0.00 38.98 5.36
1978 2041 1.536676 CCCATTTACCGAGGGGCAT 59.463 57.895 0.00 0.00 38.98 4.40
1979 2042 0.823356 CCCATTTACCGAGGGGCATG 60.823 60.000 0.00 0.00 38.98 4.06
1980 2043 0.182537 CCATTTACCGAGGGGCATGA 59.817 55.000 0.00 0.00 36.48 3.07
1981 2044 1.409521 CCATTTACCGAGGGGCATGAA 60.410 52.381 0.00 0.00 36.48 2.57
1982 2045 2.374184 CATTTACCGAGGGGCATGAAA 58.626 47.619 0.00 0.00 36.48 2.69
1983 2046 2.588464 TTTACCGAGGGGCATGAAAA 57.412 45.000 0.00 0.00 36.48 2.29
1984 2047 2.818751 TTACCGAGGGGCATGAAAAT 57.181 45.000 0.00 0.00 36.48 1.82
1985 2048 3.935818 TTACCGAGGGGCATGAAAATA 57.064 42.857 0.00 0.00 36.48 1.40
1986 2049 2.052782 ACCGAGGGGCATGAAAATAC 57.947 50.000 0.00 0.00 36.48 1.89
1987 2050 0.944386 CCGAGGGGCATGAAAATACG 59.056 55.000 0.00 0.00 0.00 3.06
1988 2051 1.663695 CGAGGGGCATGAAAATACGT 58.336 50.000 0.00 0.00 0.00 3.57
1989 2052 1.330521 CGAGGGGCATGAAAATACGTG 59.669 52.381 0.00 0.00 0.00 4.49
1990 2053 1.676006 GAGGGGCATGAAAATACGTGG 59.324 52.381 0.00 0.00 0.00 4.94
1991 2054 1.005450 AGGGGCATGAAAATACGTGGT 59.995 47.619 0.00 0.00 0.00 4.16
1992 2055 2.240160 AGGGGCATGAAAATACGTGGTA 59.760 45.455 0.00 0.00 0.00 3.25
1993 2056 3.018149 GGGGCATGAAAATACGTGGTAA 58.982 45.455 0.00 0.00 0.00 2.85
1994 2057 3.181494 GGGGCATGAAAATACGTGGTAAC 60.181 47.826 0.00 0.00 0.00 2.50
1995 2058 3.181494 GGGCATGAAAATACGTGGTAACC 60.181 47.826 0.00 0.00 0.00 2.85
1996 2059 3.486209 GGCATGAAAATACGTGGTAACCG 60.486 47.826 0.00 0.00 36.50 4.44
1997 2060 3.125658 GCATGAAAATACGTGGTAACCGT 59.874 43.478 0.00 0.14 44.00 4.83
1998 2061 4.643953 CATGAAAATACGTGGTAACCGTG 58.356 43.478 0.00 0.00 42.21 4.94
1999 2062 3.065655 TGAAAATACGTGGTAACCGTGG 58.934 45.455 0.00 0.00 42.21 4.94
2000 2063 2.837532 AAATACGTGGTAACCGTGGT 57.162 45.000 0.00 0.00 42.21 4.16
2001 2064 3.951775 AAATACGTGGTAACCGTGGTA 57.048 42.857 0.00 0.00 42.21 3.25
2002 2065 3.951775 AATACGTGGTAACCGTGGTAA 57.048 42.857 0.00 0.00 42.21 2.85
2003 2066 3.951775 ATACGTGGTAACCGTGGTAAA 57.048 42.857 0.00 0.00 42.21 2.01
2004 2067 2.837532 ACGTGGTAACCGTGGTAAAT 57.162 45.000 0.00 0.00 41.02 1.40
2005 2068 2.687370 ACGTGGTAACCGTGGTAAATC 58.313 47.619 0.00 0.00 41.02 2.17
2006 2069 2.299867 ACGTGGTAACCGTGGTAAATCT 59.700 45.455 0.00 0.00 41.02 2.40
2007 2070 2.925563 CGTGGTAACCGTGGTAAATCTC 59.074 50.000 0.00 0.00 0.00 2.75
2008 2071 3.614630 CGTGGTAACCGTGGTAAATCTCA 60.615 47.826 0.00 0.00 0.00 3.27
2009 2072 4.317488 GTGGTAACCGTGGTAAATCTCAA 58.683 43.478 0.00 0.00 0.00 3.02
2010 2073 4.756135 GTGGTAACCGTGGTAAATCTCAAA 59.244 41.667 0.00 0.00 0.00 2.69
2011 2074 5.239087 GTGGTAACCGTGGTAAATCTCAAAA 59.761 40.000 0.00 0.00 0.00 2.44
2012 2075 6.005198 TGGTAACCGTGGTAAATCTCAAAAT 58.995 36.000 0.00 0.00 0.00 1.82
2013 2076 6.490721 TGGTAACCGTGGTAAATCTCAAAATT 59.509 34.615 0.00 0.00 0.00 1.82
2014 2077 7.014422 TGGTAACCGTGGTAAATCTCAAAATTT 59.986 33.333 0.00 0.00 33.54 1.82
2015 2078 7.868922 GGTAACCGTGGTAAATCTCAAAATTTT 59.131 33.333 0.00 0.00 31.50 1.82
2016 2079 7.707774 AACCGTGGTAAATCTCAAAATTTTG 57.292 32.000 22.40 22.40 39.48 2.44
2017 2080 7.045126 ACCGTGGTAAATCTCAAAATTTTGA 57.955 32.000 27.39 27.39 44.31 2.69
2027 2090 4.920640 TCAAAATTTTGAGCGGTAACCA 57.079 36.364 26.01 3.84 41.88 3.67
2028 2091 5.263968 TCAAAATTTTGAGCGGTAACCAA 57.736 34.783 26.01 3.36 41.88 3.67
2029 2092 5.661458 TCAAAATTTTGAGCGGTAACCAAA 58.339 33.333 26.01 3.17 41.88 3.28
2030 2093 6.106673 TCAAAATTTTGAGCGGTAACCAAAA 58.893 32.000 26.01 13.02 41.88 2.44
2031 2094 6.763610 TCAAAATTTTGAGCGGTAACCAAAAT 59.236 30.769 26.01 15.64 46.33 1.82
2032 2095 6.779115 AAATTTTGAGCGGTAACCAAAATC 57.221 33.333 19.46 0.00 44.72 2.17
2033 2096 3.546002 TTTGAGCGGTAACCAAAATCG 57.454 42.857 0.00 0.00 0.00 3.34
2034 2097 2.172851 TGAGCGGTAACCAAAATCGT 57.827 45.000 0.00 0.00 0.00 3.73
2043 2106 5.122711 CGGTAACCAAAATCGTAAGTGGAAT 59.877 40.000 0.00 0.00 34.19 3.01
2058 2121 9.976511 CGTAAGTGGAATAGATTTAGATGGTAA 57.023 33.333 0.00 0.00 0.00 2.85
2063 2126 8.979574 GTGGAATAGATTTAGATGGTAACGAAG 58.020 37.037 0.00 0.00 42.51 3.79
2114 2178 7.350382 TGTGGAAAATTATGCTACAATAGGGA 58.650 34.615 0.00 0.00 0.00 4.20
2117 2181 9.432982 TGGAAAATTATGCTACAATAGGGAAAT 57.567 29.630 0.00 0.00 0.00 2.17
2153 2218 5.410924 TGCAAACTAGCTAGACAGTATGTG 58.589 41.667 27.45 9.89 42.78 3.21
2209 2449 5.051409 ACTGTAGTAGTCCCTCCATAGAC 57.949 47.826 0.00 0.00 33.17 2.59
2269 2509 9.643693 GCAAAAATGTCTTATATTATGGGATGG 57.356 33.333 0.00 0.00 0.00 3.51
2376 2617 4.150359 ACTATACTATGTGGAACGGAGGG 58.850 47.826 0.00 0.00 42.39 4.30
2377 2618 2.832643 TACTATGTGGAACGGAGGGA 57.167 50.000 0.00 0.00 42.39 4.20
2378 2619 1.486211 ACTATGTGGAACGGAGGGAG 58.514 55.000 0.00 0.00 42.39 4.30
2379 2620 1.273098 ACTATGTGGAACGGAGGGAGT 60.273 52.381 0.00 0.00 42.39 3.85
2380 2621 2.024655 ACTATGTGGAACGGAGGGAGTA 60.025 50.000 0.00 0.00 42.39 2.59
2381 2622 1.486211 ATGTGGAACGGAGGGAGTAG 58.514 55.000 0.00 0.00 42.39 2.57
2382 2623 0.113776 TGTGGAACGGAGGGAGTAGT 59.886 55.000 0.00 0.00 42.39 2.73
2383 2624 1.355381 TGTGGAACGGAGGGAGTAGTA 59.645 52.381 0.00 0.00 42.39 1.82
2415 2656 1.614241 GGTGGCTGGTGTATCTCCGT 61.614 60.000 0.00 0.00 0.00 4.69
2428 2669 3.951775 ATCTCCGTTCCTATGCTGATC 57.048 47.619 0.00 0.00 0.00 2.92
2433 2674 2.607282 CCGTTCCTATGCTGATCCGTAC 60.607 54.545 0.00 0.00 0.00 3.67
2434 2675 2.034179 CGTTCCTATGCTGATCCGTACA 59.966 50.000 0.00 0.00 0.00 2.90
2506 2747 6.264518 TCTCATGCGTACTGATTCCTATGTTA 59.735 38.462 0.00 0.00 0.00 2.41
2638 2882 2.557924 CCATGCGCCATACCATATGTTT 59.442 45.455 4.18 0.00 0.00 2.83
2671 2915 3.694566 GACAAGTTCCCAGACAAGTGTTT 59.305 43.478 0.00 0.00 0.00 2.83
2681 2925 3.249559 CAGACAAGTGTTTCTTCTGCTCC 59.750 47.826 0.00 0.00 33.63 4.70
2682 2926 3.118261 AGACAAGTGTTTCTTCTGCTCCA 60.118 43.478 0.00 0.00 33.63 3.86
2707 2951 0.898320 ACAGTCTACAATCGCTGCCT 59.102 50.000 0.00 0.00 32.65 4.75
2708 2952 1.134965 ACAGTCTACAATCGCTGCCTC 60.135 52.381 0.00 0.00 32.65 4.70
2717 2961 1.103987 ATCGCTGCCTCGAGCTAGAA 61.104 55.000 6.99 0.11 44.23 2.10
2718 2962 1.587613 CGCTGCCTCGAGCTAGAAC 60.588 63.158 6.99 0.00 44.23 3.01
2723 2967 0.179100 GCCTCGAGCTAGAACATGCA 60.179 55.000 6.99 0.00 38.99 3.96
2731 2975 4.260132 CGAGCTAGAACATGCAGTTGAATC 60.260 45.833 6.31 0.00 41.51 2.52
2757 3001 0.828762 ACTTGCTTGCTCCAATGGCA 60.829 50.000 0.00 0.00 37.97 4.92
2870 3114 1.286880 CAGCTTCAAAGGGCCAACG 59.713 57.895 6.18 0.00 0.00 4.10
2939 3183 6.892951 GCACGAAATTTATATATAACGAGGCG 59.107 38.462 15.93 12.85 0.00 5.52
3015 3259 3.588210 ATGGGCACATCTTCATGATCA 57.412 42.857 0.00 0.00 33.72 2.92
3017 3261 3.905968 TGGGCACATCTTCATGATCAAT 58.094 40.909 0.00 0.00 33.72 2.57
3029 3273 8.631480 TCTTCATGATCAATATGGAAATGGAG 57.369 34.615 0.00 7.65 0.00 3.86
3038 3282 4.483243 GAAATGGAGCCCGCCGGA 62.483 66.667 5.05 0.00 0.00 5.14
3056 3300 3.426695 CCGGAATTGTCATCTCAGTTTGC 60.427 47.826 0.00 0.00 0.00 3.68
3058 3302 4.436584 CGGAATTGTCATCTCAGTTTGCTC 60.437 45.833 0.00 0.00 0.00 4.26
3091 3335 5.875224 TCACATTACTGGATCCAAGTTCAA 58.125 37.500 17.00 8.58 0.00 2.69
3101 3345 1.419762 TCCAAGTTCAAGTGCAGGCTA 59.580 47.619 0.00 0.00 0.00 3.93
3115 3359 4.007659 TGCAGGCTATCAATATCATGCAG 58.992 43.478 8.58 0.00 40.00 4.41
3125 3369 1.378531 TATCATGCAGTGAAACGGGC 58.621 50.000 0.00 0.00 45.86 6.13
3155 3399 1.089920 CTGCCGAGTTCCAAATGAGG 58.910 55.000 0.00 0.00 0.00 3.86
3223 3467 2.325082 CCAAGGGGTTGCTTCGACG 61.325 63.158 0.00 0.00 0.00 5.12
3227 3471 4.072088 GGGTTGCTTCGACGTGCG 62.072 66.667 0.00 0.00 42.69 5.34
3291 3535 2.338785 GCAGCTTTGGAGGAGGCAC 61.339 63.158 0.00 0.00 0.00 5.01
3296 3540 2.454832 CTTTGGAGGAGGCACGAGCA 62.455 60.000 7.26 0.00 44.61 4.26
3334 3578 6.734171 CGATGAAAGTCTTTCTTCAAATCGTC 59.266 38.462 27.67 12.54 41.38 4.20
3341 3585 4.515191 TCTTTCTTCAAATCGTCCAAGTGG 59.485 41.667 0.00 0.00 0.00 4.00
3342 3586 3.762407 TCTTCAAATCGTCCAAGTGGA 57.238 42.857 0.00 0.00 43.08 4.02
3415 3659 9.184523 CATGATATTTGTACCCTTGGAAGTTTA 57.815 33.333 0.00 0.00 0.00 2.01
3466 3710 5.511088 CGAAACTACATTCGCTAAAGTGT 57.489 39.130 0.00 0.00 44.69 3.55
3477 3721 4.320023 TCGCTAAAGTGTTGCTTAATCCA 58.680 39.130 0.00 0.00 36.17 3.41
3514 3758 7.976175 TGTATCGAGCCATCTTTATGTATGATC 59.024 37.037 0.00 0.00 0.00 2.92
3564 3808 0.257328 TGTTTCACAGGTCCAGCCAA 59.743 50.000 0.00 0.00 40.61 4.52
3576 3820 1.431243 TCCAGCCAAACAGGGGTTAAT 59.569 47.619 0.00 0.00 36.26 1.40
3665 3909 5.783111 GCCAAAGCTCCTTTTTCTATTGAA 58.217 37.500 0.00 0.00 30.60 2.69
3675 3919 8.871686 TCCTTTTTCTATTGAAAGAAAGTTGC 57.128 30.769 10.90 0.00 44.15 4.17
3679 3923 6.389830 TTCTATTGAAAGAAAGTTGCTGCA 57.610 33.333 0.00 0.00 32.59 4.41
3708 3952 0.667993 ATAATGTTGGGCGCATTCCG 59.332 50.000 10.83 0.00 37.65 4.30
3710 3954 1.037030 AATGTTGGGCGCATTCCGAT 61.037 50.000 10.83 0.00 40.02 4.18
3717 3961 0.884704 GGCGCATTCCGATACCATGT 60.885 55.000 10.83 0.00 40.02 3.21
3735 3979 7.696992 ACCATGTTGTCCGAAATAGTTAAAT 57.303 32.000 0.00 0.00 0.00 1.40
3737 3981 9.403583 ACCATGTTGTCCGAAATAGTTAAATAT 57.596 29.630 0.00 0.00 0.00 1.28
3768 4013 4.200092 CAGAGTTTATTAGGGAGGGTTGC 58.800 47.826 0.00 0.00 0.00 4.17
3836 4081 5.098211 GCTTCCAGAGAATGTGCAAAATAC 58.902 41.667 0.00 0.00 0.00 1.89
3911 4157 2.745152 GCGTGCTAATCACCCCATAACT 60.745 50.000 0.00 0.00 42.69 2.24
3930 4179 8.551205 CCATAACTAAACAGTGTATGTGCATAG 58.449 37.037 0.00 0.00 43.00 2.23
3940 4189 3.909995 TGTATGTGCATAGGGGATAAGCT 59.090 43.478 0.00 0.00 0.00 3.74
3961 4210 6.157211 AGCTCCGTCCTACAAATAAATATCG 58.843 40.000 0.00 0.00 0.00 2.92
3966 4215 6.346598 CCGTCCTACAAATAAATATCGTGCAG 60.347 42.308 0.00 0.00 0.00 4.41
3967 4216 6.363473 GTCCTACAAATAAATATCGTGCAGC 58.637 40.000 0.00 0.00 0.00 5.25
3968 4217 5.468746 TCCTACAAATAAATATCGTGCAGCC 59.531 40.000 0.00 0.00 0.00 4.85
4054 4303 7.784633 CCTATCTCAAGAGAGGTTTGAATTC 57.215 40.000 11.74 0.00 45.83 2.17
4057 4306 9.447157 CTATCTCAAGAGAGGTTTGAATTCTTT 57.553 33.333 7.05 0.00 42.34 2.52
4058 4307 7.736447 TCTCAAGAGAGGTTTGAATTCTTTC 57.264 36.000 7.05 0.00 42.34 2.62
4059 4308 7.512992 TCTCAAGAGAGGTTTGAATTCTTTCT 58.487 34.615 7.05 2.73 42.34 2.52
4060 4309 7.995488 TCTCAAGAGAGGTTTGAATTCTTTCTT 59.005 33.333 7.05 0.00 42.34 2.52
4164 4413 0.802494 CTATTCCAACACACCCGCAC 59.198 55.000 0.00 0.00 0.00 5.34
4192 4441 2.093447 GCACTGCAGTTGACCTACCTAT 60.093 50.000 18.94 0.00 0.00 2.57
4214 4463 3.054434 TCCATAAGACCCCACAGACATTG 60.054 47.826 0.00 0.00 0.00 2.82
4259 4508 2.806244 GTTGTCTACAAAGTGCCATCGT 59.194 45.455 0.00 0.00 37.63 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.930846 AATGATAGCTTAGCTTAATTCCATGT 57.069 30.769 13.44 0.00 40.44 3.21
58 59 6.405538 GTGAATTTAAGGCATTCAAATGGGA 58.594 36.000 4.98 0.00 41.30 4.37
114 115 2.908015 GCCCTTCGCCATGGTAGA 59.092 61.111 14.67 10.76 0.00 2.59
115 116 2.587322 TTCGCCCTTCGCCATGGTAG 62.587 60.000 14.67 8.34 38.27 3.18
116 117 2.587322 CTTCGCCCTTCGCCATGGTA 62.587 60.000 14.67 0.00 38.27 3.25
140 141 5.360714 TCAAAAAGGTTTCTCTGCATGTCTT 59.639 36.000 0.00 0.00 0.00 3.01
150 151 8.702163 TCAGAATTGTTTCAAAAAGGTTTCTC 57.298 30.769 0.00 0.00 34.08 2.87
169 170 6.200097 GCACACAAAAACCGTAATTTCAGAAT 59.800 34.615 0.00 0.00 0.00 2.40
172 173 4.800993 TGCACACAAAAACCGTAATTTCAG 59.199 37.500 0.00 0.00 0.00 3.02
201 202 1.144969 CGCACACGTAGTTGATTGGT 58.855 50.000 0.00 0.00 41.61 3.67
203 204 1.790043 TGTCGCACACGTAGTTGATTG 59.210 47.619 0.00 0.00 41.61 2.67
212 213 1.668751 AGAAAAACATGTCGCACACGT 59.331 42.857 0.00 0.00 41.18 4.49
215 216 2.032799 GTCCAGAAAAACATGTCGCACA 59.967 45.455 0.00 0.00 0.00 4.57
220 221 4.389374 TCCTCTGTCCAGAAAAACATGTC 58.611 43.478 0.00 0.00 36.94 3.06
285 286 5.973565 GCACAAAAATACATCTAGCACATCC 59.026 40.000 0.00 0.00 0.00 3.51
374 375 6.226052 AGAAAAGCCATTCAACCAATCTTTC 58.774 36.000 2.35 0.00 0.00 2.62
472 473 4.521146 TCTTCCGACGAGGTAATACTTCT 58.479 43.478 0.00 0.00 41.99 2.85
567 568 9.848172 CGTCCAAAAATTCTTGTCTTAAATTTG 57.152 29.630 0.00 0.00 33.95 2.32
588 589 4.746535 TGCTAAATATTCACTCCGTCCA 57.253 40.909 0.00 0.00 0.00 4.02
610 611 7.552459 AGTTAGCATACACATGTACATACACA 58.448 34.615 8.32 0.00 39.30 3.72
730 749 3.756933 AGACGCACACTAACCCTAAAA 57.243 42.857 0.00 0.00 0.00 1.52
731 750 3.322828 AGAAGACGCACACTAACCCTAAA 59.677 43.478 0.00 0.00 0.00 1.85
733 752 2.522185 AGAAGACGCACACTAACCCTA 58.478 47.619 0.00 0.00 0.00 3.53
734 753 1.339097 AGAAGACGCACACTAACCCT 58.661 50.000 0.00 0.00 0.00 4.34
735 754 3.521947 ATAGAAGACGCACACTAACCC 57.478 47.619 0.00 0.00 0.00 4.11
736 755 4.092968 CCAAATAGAAGACGCACACTAACC 59.907 45.833 0.00 0.00 0.00 2.85
740 802 2.038557 ACCCAAATAGAAGACGCACACT 59.961 45.455 0.00 0.00 0.00 3.55
755 817 1.072266 ACAGCCCAGATACACCCAAA 58.928 50.000 0.00 0.00 0.00 3.28
772 834 2.594303 CCGAGCAACAGGCCAACA 60.594 61.111 5.01 0.00 46.50 3.33
779 841 3.850098 AAGGTGGGCCGAGCAACAG 62.850 63.158 19.63 0.00 40.50 3.16
780 842 2.920076 AAAAGGTGGGCCGAGCAACA 62.920 55.000 19.63 0.00 40.50 3.33
803 865 1.341606 GAGAAGGAAACGCGAGACAG 58.658 55.000 15.93 0.00 0.00 3.51
833 895 1.480205 GATGGCGGCGATGAAATTTG 58.520 50.000 12.98 0.00 0.00 2.32
853 916 1.533625 TTCCATTTTCTGTCTGGCCG 58.466 50.000 0.00 0.00 0.00 6.13
898 961 2.100603 CGGGAAGCGAGTCGTCTC 59.899 66.667 15.08 10.59 37.35 3.36
914 977 2.551270 GCTTCTCGTTGCACCACG 59.449 61.111 4.54 4.54 41.78 4.94
922 985 0.249911 AGACGCAAAGGCTTCTCGTT 60.250 50.000 21.75 12.49 44.49 3.85
992 1055 1.450312 CGCTTTCCCATCGCTTCCT 60.450 57.895 0.00 0.00 0.00 3.36
1018 1081 1.227380 CGCCCTCATCTTTCTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
1179 1242 5.348986 TCGTAGGATTTGAGTTGTATCAGC 58.651 41.667 0.00 0.00 0.00 4.26
1210 1273 2.388735 TCCATTGGTGCTATCGTCTCT 58.611 47.619 1.86 0.00 0.00 3.10
1239 1302 7.504238 ACTCTATGTCTAAGACACCCAGATAAG 59.496 40.741 0.00 0.00 45.65 1.73
1240 1303 7.355101 ACTCTATGTCTAAGACACCCAGATAA 58.645 38.462 0.00 0.00 45.65 1.75
1306 1369 9.817809 CCATACGCACTGGAATACTATTATAAT 57.182 33.333 2.97 2.97 35.70 1.28
1307 1370 8.809066 ACCATACGCACTGGAATACTATTATAA 58.191 33.333 5.59 0.00 37.22 0.98
1308 1371 8.248253 CACCATACGCACTGGAATACTATTATA 58.752 37.037 5.59 0.00 37.22 0.98
1309 1372 7.097192 CACCATACGCACTGGAATACTATTAT 58.903 38.462 5.59 0.00 37.22 1.28
1310 1373 6.452242 CACCATACGCACTGGAATACTATTA 58.548 40.000 5.59 0.00 37.22 0.98
1311 1374 5.297547 CACCATACGCACTGGAATACTATT 58.702 41.667 5.59 0.00 37.22 1.73
1312 1375 4.799586 GCACCATACGCACTGGAATACTAT 60.800 45.833 5.59 0.00 37.22 2.12
1313 1376 3.491964 GCACCATACGCACTGGAATACTA 60.492 47.826 5.59 0.00 37.22 1.82
1322 1385 0.902531 AACTAGGCACCATACGCACT 59.097 50.000 0.00 0.00 0.00 4.40
1355 1418 7.397192 AGGCAATTAGGTAATCATCAACAGTTT 59.603 33.333 0.00 0.00 0.00 2.66
1362 1425 7.716799 AAAACAGGCAATTAGGTAATCATCA 57.283 32.000 0.00 0.00 0.00 3.07
1364 1427 7.180051 TCCAAAAACAGGCAATTAGGTAATCAT 59.820 33.333 0.00 0.00 0.00 2.45
1438 1501 5.784750 TTGATGTGATGTCGTTCTGATTC 57.215 39.130 0.00 0.00 0.00 2.52
1479 1542 3.075283 TGGTAATCACCCAACACCAGAAT 59.925 43.478 0.00 0.00 45.11 2.40
1483 1546 3.161067 CATTGGTAATCACCCAACACCA 58.839 45.455 0.00 0.00 44.36 4.17
1485 1548 2.415357 CGCATTGGTAATCACCCAACAC 60.415 50.000 0.00 0.00 44.36 3.32
1512 1575 7.434013 AGTTTGACAACAAAATTTAACTAGGCG 59.566 33.333 0.00 0.00 45.65 5.52
1521 1584 7.710475 CCATCCTACAGTTTGACAACAAAATTT 59.290 33.333 0.00 0.00 45.65 1.82
1530 1593 2.290260 CCAGCCATCCTACAGTTTGACA 60.290 50.000 0.00 0.00 0.00 3.58
1548 1611 1.001974 TGTCGTCCTTCACCAATCCAG 59.998 52.381 0.00 0.00 0.00 3.86
1551 1614 2.673368 GTGATGTCGTCCTTCACCAATC 59.327 50.000 10.55 0.00 40.57 2.67
1552 1615 2.038426 TGTGATGTCGTCCTTCACCAAT 59.962 45.455 15.64 0.00 43.92 3.16
1554 1617 1.044611 TGTGATGTCGTCCTTCACCA 58.955 50.000 15.64 6.64 43.92 4.17
1555 1618 2.271800 GATGTGATGTCGTCCTTCACC 58.728 52.381 15.64 4.28 43.92 4.02
1556 1619 2.959516 TGATGTGATGTCGTCCTTCAC 58.040 47.619 13.15 13.15 44.48 3.18
1557 1620 3.676291 TTGATGTGATGTCGTCCTTCA 57.324 42.857 0.00 0.00 0.00 3.02
1558 1621 4.728882 GCAATTGATGTGATGTCGTCCTTC 60.729 45.833 10.34 0.00 0.00 3.46
1559 1622 3.127548 GCAATTGATGTGATGTCGTCCTT 59.872 43.478 10.34 0.00 0.00 3.36
1560 1623 2.679837 GCAATTGATGTGATGTCGTCCT 59.320 45.455 10.34 0.00 0.00 3.85
1561 1624 2.419673 TGCAATTGATGTGATGTCGTCC 59.580 45.455 10.34 0.00 0.00 4.79
1562 1625 3.745332 TGCAATTGATGTGATGTCGTC 57.255 42.857 10.34 0.00 0.00 4.20
1563 1626 3.441222 ACATGCAATTGATGTGATGTCGT 59.559 39.130 10.34 0.00 32.15 4.34
1564 1627 4.023739 ACATGCAATTGATGTGATGTCG 57.976 40.909 10.34 0.00 32.15 4.35
1565 1628 6.715344 AAAACATGCAATTGATGTGATGTC 57.285 33.333 10.34 0.00 34.85 3.06
1566 1629 6.072948 CCAAAAACATGCAATTGATGTGATGT 60.073 34.615 10.34 5.75 36.42 3.06
1567 1630 6.147985 TCCAAAAACATGCAATTGATGTGATG 59.852 34.615 10.34 13.67 34.22 3.07
1568 1631 6.148150 GTCCAAAAACATGCAATTGATGTGAT 59.852 34.615 10.34 6.67 34.22 3.06
1569 1632 5.466058 GTCCAAAAACATGCAATTGATGTGA 59.534 36.000 10.34 6.73 34.22 3.58
1570 1633 5.467399 AGTCCAAAAACATGCAATTGATGTG 59.533 36.000 10.34 6.62 34.22 3.21
1571 1634 5.613329 AGTCCAAAAACATGCAATTGATGT 58.387 33.333 10.34 12.78 35.49 3.06
1572 1635 6.017770 ACAAGTCCAAAAACATGCAATTGATG 60.018 34.615 10.34 12.17 0.00 3.07
1573 1636 6.056884 ACAAGTCCAAAAACATGCAATTGAT 58.943 32.000 10.34 0.00 0.00 2.57
1574 1637 5.426504 ACAAGTCCAAAAACATGCAATTGA 58.573 33.333 10.34 0.00 0.00 2.57
1575 1638 5.738118 ACAAGTCCAAAAACATGCAATTG 57.262 34.783 0.00 0.00 0.00 2.32
1604 1667 3.421231 CGTTCTTCAGACACGTCAACTAC 59.579 47.826 0.00 0.00 0.00 2.73
1618 1681 3.056607 TCTGCATCAGATGTCGTTCTTCA 60.057 43.478 12.18 0.00 35.39 3.02
1639 1702 7.801716 TGTTAGGCATTTGGACTATAATGTC 57.198 36.000 0.00 0.00 36.84 3.06
1663 1726 6.890558 CAGAAAATGCACCGATCAAATTTTT 58.109 32.000 0.00 0.00 32.20 1.94
1664 1727 6.470557 CAGAAAATGCACCGATCAAATTTT 57.529 33.333 0.00 0.00 34.14 1.82
1686 1749 6.014584 ACGGATGGAAGACAACATATATAGCA 60.015 38.462 0.00 0.00 0.00 3.49
1705 1768 4.058721 TGAATGGACTCATACACGGATG 57.941 45.455 0.00 0.00 32.44 3.51
1735 1798 8.539674 CGATAACGATCTGAATGACATTACAAA 58.460 33.333 0.00 0.00 42.66 2.83
1736 1799 7.704899 ACGATAACGATCTGAATGACATTACAA 59.295 33.333 0.00 0.00 42.66 2.41
1737 1800 7.167468 CACGATAACGATCTGAATGACATTACA 59.833 37.037 0.00 0.97 42.66 2.41
1738 1801 7.167635 ACACGATAACGATCTGAATGACATTAC 59.832 37.037 0.00 0.00 42.66 1.89
1802 1865 3.451141 GGCAACTTGTGAATGTTGGAA 57.549 42.857 7.75 0.00 42.48 3.53
1821 1884 6.758254 ACAACCTATTTCCATGTTCAAAAGG 58.242 36.000 0.00 0.00 0.00 3.11
1822 1885 9.191995 GTAACAACCTATTTCCATGTTCAAAAG 57.808 33.333 0.00 0.00 35.89 2.27
1823 1886 8.696374 TGTAACAACCTATTTCCATGTTCAAAA 58.304 29.630 0.00 0.00 35.89 2.44
1824 1887 8.239038 TGTAACAACCTATTTCCATGTTCAAA 57.761 30.769 0.00 0.00 35.89 2.69
1825 1888 7.825331 TGTAACAACCTATTTCCATGTTCAA 57.175 32.000 0.00 0.00 35.89 2.69
1826 1889 7.255660 GGTTGTAACAACCTATTTCCATGTTCA 60.256 37.037 9.79 0.00 37.34 3.18
1827 1890 7.088272 GGTTGTAACAACCTATTTCCATGTTC 58.912 38.462 9.79 0.00 37.34 3.18
1829 1892 6.071984 TGGTTGTAACAACCTATTTCCATGT 58.928 36.000 20.63 0.00 40.88 3.21
1830 1893 6.582677 TGGTTGTAACAACCTATTTCCATG 57.417 37.500 20.63 0.00 40.88 3.66
1831 1894 6.350949 GCATGGTTGTAACAACCTATTTCCAT 60.351 38.462 20.63 7.15 40.88 3.41
1832 1895 5.047660 GCATGGTTGTAACAACCTATTTCCA 60.048 40.000 20.63 5.36 40.88 3.53
1833 1896 5.407502 GCATGGTTGTAACAACCTATTTCC 58.592 41.667 20.63 0.29 40.88 3.13
1834 1897 5.092781 CGCATGGTTGTAACAACCTATTTC 58.907 41.667 20.63 9.82 40.88 2.17
1836 1899 4.328536 TCGCATGGTTGTAACAACCTATT 58.671 39.130 20.63 9.01 40.88 1.73
1837 1900 3.938963 CTCGCATGGTTGTAACAACCTAT 59.061 43.478 20.63 13.15 40.88 2.57
1838 1901 3.007074 TCTCGCATGGTTGTAACAACCTA 59.993 43.478 20.63 11.99 40.88 3.08
1839 1902 2.151202 CTCGCATGGTTGTAACAACCT 58.849 47.619 20.63 9.44 40.88 3.50
1840 1903 2.147958 TCTCGCATGGTTGTAACAACC 58.852 47.619 9.96 9.96 40.67 3.77
1841 1904 3.250040 AGTTCTCGCATGGTTGTAACAAC 59.750 43.478 0.00 0.00 0.00 3.32
1842 1905 3.472652 AGTTCTCGCATGGTTGTAACAA 58.527 40.909 0.00 0.00 0.00 2.83
1843 1906 3.120321 AGTTCTCGCATGGTTGTAACA 57.880 42.857 0.00 0.00 0.00 2.41
1844 1907 4.689345 AGTTAGTTCTCGCATGGTTGTAAC 59.311 41.667 0.00 0.00 0.00 2.50
1845 1908 4.890088 AGTTAGTTCTCGCATGGTTGTAA 58.110 39.130 0.00 0.00 0.00 2.41
1847 1910 3.402628 AGTTAGTTCTCGCATGGTTGT 57.597 42.857 0.00 0.00 0.00 3.32
1848 1911 7.715265 AATATAGTTAGTTCTCGCATGGTTG 57.285 36.000 0.00 0.00 0.00 3.77
1849 1912 9.826574 TTAAATATAGTTAGTTCTCGCATGGTT 57.173 29.630 0.00 0.00 0.00 3.67
1850 1913 9.826574 TTTAAATATAGTTAGTTCTCGCATGGT 57.173 29.630 0.00 0.00 0.00 3.55
1868 1931 7.719633 ACGGCAACATCTCAGGTATTTAAATAT 59.280 33.333 11.00 0.00 0.00 1.28
1871 1934 5.123186 CACGGCAACATCTCAGGTATTTAAA 59.877 40.000 0.00 0.00 0.00 1.52
1872 1935 4.634004 CACGGCAACATCTCAGGTATTTAA 59.366 41.667 0.00 0.00 0.00 1.52
1873 1936 4.188462 CACGGCAACATCTCAGGTATTTA 58.812 43.478 0.00 0.00 0.00 1.40
1874 1937 3.009723 CACGGCAACATCTCAGGTATTT 58.990 45.455 0.00 0.00 0.00 1.40
1878 1941 1.672356 GCACGGCAACATCTCAGGT 60.672 57.895 0.00 0.00 0.00 4.00
1879 1942 0.957395 AAGCACGGCAACATCTCAGG 60.957 55.000 0.00 0.00 0.00 3.86
1880 1943 0.877071 AAAGCACGGCAACATCTCAG 59.123 50.000 0.00 0.00 0.00 3.35
1881 1944 2.177394 TAAAGCACGGCAACATCTCA 57.823 45.000 0.00 0.00 0.00 3.27
1882 1945 3.119849 ACAATAAAGCACGGCAACATCTC 60.120 43.478 0.00 0.00 0.00 2.75
1883 1946 2.819608 ACAATAAAGCACGGCAACATCT 59.180 40.909 0.00 0.00 0.00 2.90
1884 1947 3.216147 ACAATAAAGCACGGCAACATC 57.784 42.857 0.00 0.00 0.00 3.06
1885 1948 3.504134 TGTACAATAAAGCACGGCAACAT 59.496 39.130 0.00 0.00 0.00 2.71
1886 1949 2.879026 TGTACAATAAAGCACGGCAACA 59.121 40.909 0.00 0.00 0.00 3.33
1887 1950 3.546002 TGTACAATAAAGCACGGCAAC 57.454 42.857 0.00 0.00 0.00 4.17
1888 1951 4.216472 TCAATGTACAATAAAGCACGGCAA 59.784 37.500 0.00 0.00 0.00 4.52
1889 1952 3.753797 TCAATGTACAATAAAGCACGGCA 59.246 39.130 0.00 0.00 0.00 5.69
1890 1953 4.342772 CTCAATGTACAATAAAGCACGGC 58.657 43.478 0.00 0.00 0.00 5.68
1891 1954 4.342772 GCTCAATGTACAATAAAGCACGG 58.657 43.478 0.00 0.00 0.00 4.94
1892 1955 4.021822 CGCTCAATGTACAATAAAGCACG 58.978 43.478 17.53 5.51 0.00 5.34
1893 1956 4.969816 ACGCTCAATGTACAATAAAGCAC 58.030 39.130 17.53 0.00 0.00 4.40
1894 1957 5.621197 AACGCTCAATGTACAATAAAGCA 57.379 34.783 17.53 0.00 0.00 3.91
1895 1958 8.442605 TTTAAACGCTCAATGTACAATAAAGC 57.557 30.769 0.00 6.26 0.00 3.51
1945 2008 6.238484 CGGTAAATGGGCATTTCAAACAAAAA 60.238 34.615 0.00 0.00 40.99 1.94
1946 2009 5.237344 CGGTAAATGGGCATTTCAAACAAAA 59.763 36.000 0.00 0.00 40.99 2.44
1947 2010 4.752101 CGGTAAATGGGCATTTCAAACAAA 59.248 37.500 0.00 0.00 40.99 2.83
1948 2011 4.039245 TCGGTAAATGGGCATTTCAAACAA 59.961 37.500 0.00 0.00 40.99 2.83
1949 2012 3.574396 TCGGTAAATGGGCATTTCAAACA 59.426 39.130 0.00 0.00 40.99 2.83
1950 2013 4.173256 CTCGGTAAATGGGCATTTCAAAC 58.827 43.478 0.00 0.00 40.99 2.93
1951 2014 3.194542 CCTCGGTAAATGGGCATTTCAAA 59.805 43.478 0.00 0.00 40.99 2.69
1952 2015 2.757868 CCTCGGTAAATGGGCATTTCAA 59.242 45.455 0.00 0.00 40.99 2.69
1953 2016 2.374184 CCTCGGTAAATGGGCATTTCA 58.626 47.619 0.00 0.00 40.99 2.69
1954 2017 1.681264 CCCTCGGTAAATGGGCATTTC 59.319 52.381 0.00 0.00 40.99 2.17
1955 2018 1.687996 CCCCTCGGTAAATGGGCATTT 60.688 52.381 0.00 0.00 42.95 2.32
1956 2019 0.106217 CCCCTCGGTAAATGGGCATT 60.106 55.000 0.00 0.00 39.61 3.56
1957 2020 1.536676 CCCCTCGGTAAATGGGCAT 59.463 57.895 0.00 0.00 39.61 4.40
1958 2021 3.003230 CCCCTCGGTAAATGGGCA 58.997 61.111 0.00 0.00 39.61 5.36
1960 2023 0.823356 CATGCCCCTCGGTAAATGGG 60.823 60.000 0.00 0.00 41.23 4.00
1961 2024 0.182537 TCATGCCCCTCGGTAAATGG 59.817 55.000 0.00 0.00 0.00 3.16
1962 2025 2.051334 TTCATGCCCCTCGGTAAATG 57.949 50.000 0.00 0.00 0.00 2.32
1963 2026 2.818751 TTTCATGCCCCTCGGTAAAT 57.181 45.000 0.00 0.00 0.00 1.40
1964 2027 2.588464 TTTTCATGCCCCTCGGTAAA 57.412 45.000 0.00 0.00 0.00 2.01
1965 2028 2.818751 ATTTTCATGCCCCTCGGTAA 57.181 45.000 0.00 0.00 0.00 2.85
1966 2029 2.484065 CGTATTTTCATGCCCCTCGGTA 60.484 50.000 0.00 0.00 0.00 4.02
1967 2030 1.745827 CGTATTTTCATGCCCCTCGGT 60.746 52.381 0.00 0.00 0.00 4.69
1968 2031 0.944386 CGTATTTTCATGCCCCTCGG 59.056 55.000 0.00 0.00 0.00 4.63
1969 2032 1.330521 CACGTATTTTCATGCCCCTCG 59.669 52.381 0.00 0.00 0.00 4.63
1970 2033 1.676006 CCACGTATTTTCATGCCCCTC 59.324 52.381 0.00 0.00 0.00 4.30
1971 2034 1.005450 ACCACGTATTTTCATGCCCCT 59.995 47.619 0.00 0.00 0.00 4.79
1972 2035 1.470051 ACCACGTATTTTCATGCCCC 58.530 50.000 0.00 0.00 0.00 5.80
1973 2036 3.181494 GGTTACCACGTATTTTCATGCCC 60.181 47.826 0.00 0.00 0.00 5.36
1974 2037 3.486209 CGGTTACCACGTATTTTCATGCC 60.486 47.826 1.13 0.00 0.00 4.40
1975 2038 3.125658 ACGGTTACCACGTATTTTCATGC 59.874 43.478 1.13 0.00 43.60 4.06
1976 2039 4.436317 CCACGGTTACCACGTATTTTCATG 60.436 45.833 1.13 0.00 43.58 3.07
1977 2040 3.685756 CCACGGTTACCACGTATTTTCAT 59.314 43.478 1.13 0.00 43.58 2.57
1978 2041 3.065655 CCACGGTTACCACGTATTTTCA 58.934 45.455 1.13 0.00 43.58 2.69
1979 2042 3.066380 ACCACGGTTACCACGTATTTTC 58.934 45.455 1.13 0.00 43.58 2.29
1980 2043 3.124578 ACCACGGTTACCACGTATTTT 57.875 42.857 1.13 0.00 43.58 1.82
1981 2044 2.837532 ACCACGGTTACCACGTATTT 57.162 45.000 1.13 0.00 43.58 1.40
1982 2045 3.951775 TTACCACGGTTACCACGTATT 57.048 42.857 1.13 0.00 43.58 1.89
1983 2046 3.951775 TTTACCACGGTTACCACGTAT 57.048 42.857 1.13 0.00 43.58 3.06
1984 2047 3.509575 AGATTTACCACGGTTACCACGTA 59.490 43.478 1.13 0.00 43.58 3.57
1985 2048 2.299867 AGATTTACCACGGTTACCACGT 59.700 45.455 1.13 0.00 46.82 4.49
1986 2049 2.925563 GAGATTTACCACGGTTACCACG 59.074 50.000 1.13 0.00 37.36 4.94
1987 2050 3.929094 TGAGATTTACCACGGTTACCAC 58.071 45.455 1.13 0.00 0.00 4.16
1988 2051 4.620589 TTGAGATTTACCACGGTTACCA 57.379 40.909 1.13 0.00 0.00 3.25
1989 2052 5.945466 TTTTGAGATTTACCACGGTTACC 57.055 39.130 0.00 0.00 0.00 2.85
1990 2053 8.696175 CAAAATTTTGAGATTTACCACGGTTAC 58.304 33.333 23.72 0.00 40.55 2.50
1991 2054 8.630917 TCAAAATTTTGAGATTTACCACGGTTA 58.369 29.630 26.01 1.81 41.88 2.85
1992 2055 7.493367 TCAAAATTTTGAGATTTACCACGGTT 58.507 30.769 26.01 0.00 41.88 4.44
1993 2056 7.045126 TCAAAATTTTGAGATTTACCACGGT 57.955 32.000 26.01 0.00 41.88 4.83
2006 2069 4.920640 TGGTTACCGCTCAAAATTTTGA 57.079 36.364 27.39 27.39 44.31 2.69
2007 2070 5.975410 TTTGGTTACCGCTCAAAATTTTG 57.025 34.783 22.40 22.40 39.48 2.44
2008 2071 6.074034 CGATTTTGGTTACCGCTCAAAATTTT 60.074 34.615 10.23 0.00 45.39 1.82
2009 2072 5.404066 CGATTTTGGTTACCGCTCAAAATTT 59.596 36.000 10.23 0.00 45.39 1.82
2010 2073 4.920927 CGATTTTGGTTACCGCTCAAAATT 59.079 37.500 10.23 0.00 45.39 1.82
2011 2074 4.022676 ACGATTTTGGTTACCGCTCAAAAT 60.023 37.500 9.09 9.09 46.94 1.82
2012 2075 3.315749 ACGATTTTGGTTACCGCTCAAAA 59.684 39.130 0.00 0.00 42.22 2.44
2013 2076 2.879646 ACGATTTTGGTTACCGCTCAAA 59.120 40.909 0.00 0.00 0.00 2.69
2014 2077 2.496111 ACGATTTTGGTTACCGCTCAA 58.504 42.857 0.00 0.00 0.00 3.02
2015 2078 2.172851 ACGATTTTGGTTACCGCTCA 57.827 45.000 0.00 0.00 0.00 4.26
2016 2079 3.681417 ACTTACGATTTTGGTTACCGCTC 59.319 43.478 0.00 0.00 0.00 5.03
2017 2080 3.434299 CACTTACGATTTTGGTTACCGCT 59.566 43.478 0.00 0.00 0.00 5.52
2018 2081 3.425227 CCACTTACGATTTTGGTTACCGC 60.425 47.826 0.00 0.00 0.00 5.68
2019 2082 3.995705 TCCACTTACGATTTTGGTTACCG 59.004 43.478 0.00 0.00 0.00 4.02
2020 2083 5.945466 TTCCACTTACGATTTTGGTTACC 57.055 39.130 0.00 0.00 0.00 2.85
2021 2084 8.483307 TCTATTCCACTTACGATTTTGGTTAC 57.517 34.615 0.00 0.00 0.00 2.50
2022 2085 9.675464 AATCTATTCCACTTACGATTTTGGTTA 57.325 29.630 0.00 0.00 0.00 2.85
2023 2086 8.575649 AATCTATTCCACTTACGATTTTGGTT 57.424 30.769 0.00 0.00 0.00 3.67
2024 2087 8.575649 AAATCTATTCCACTTACGATTTTGGT 57.424 30.769 0.00 0.00 29.63 3.67
2029 2092 9.712305 CCATCTAAATCTATTCCACTTACGATT 57.288 33.333 0.00 0.00 0.00 3.34
2030 2093 8.871125 ACCATCTAAATCTATTCCACTTACGAT 58.129 33.333 0.00 0.00 0.00 3.73
2031 2094 8.246430 ACCATCTAAATCTATTCCACTTACGA 57.754 34.615 0.00 0.00 0.00 3.43
2032 2095 9.976511 TTACCATCTAAATCTATTCCACTTACG 57.023 33.333 0.00 0.00 0.00 3.18
2034 2097 9.976511 CGTTACCATCTAAATCTATTCCACTTA 57.023 33.333 0.00 0.00 0.00 2.24
2058 2121 1.009829 GGCGCATCTTCAATCTTCGT 58.990 50.000 10.83 0.00 0.00 3.85
2059 2122 0.305922 GGGCGCATCTTCAATCTTCG 59.694 55.000 10.83 0.00 0.00 3.79
2063 2126 1.035139 AATGGGGCGCATCTTCAATC 58.965 50.000 17.96 0.00 0.00 2.67
2106 2170 8.730680 GCATAAGGTACACATATTTCCCTATTG 58.269 37.037 0.00 0.00 0.00 1.90
2110 2174 6.260700 TGCATAAGGTACACATATTTCCCT 57.739 37.500 0.00 0.00 0.00 4.20
2114 2178 8.621286 GCTAGTTTGCATAAGGTACACATATTT 58.379 33.333 0.00 0.00 0.00 1.40
2117 2181 6.884832 AGCTAGTTTGCATAAGGTACACATA 58.115 36.000 0.00 0.00 34.99 2.29
2118 2182 5.745227 AGCTAGTTTGCATAAGGTACACAT 58.255 37.500 0.00 0.00 34.99 3.21
2153 2218 3.950397 TGTGTTTCCCCATAGTGATGAC 58.050 45.455 0.00 0.00 34.73 3.06
2182 2247 9.794753 TCTATGGAGGGACTACTACAGTATATA 57.205 37.037 0.00 0.00 42.22 0.86
2196 2436 6.722129 ACATCTTATACTGTCTATGGAGGGAC 59.278 42.308 0.00 0.00 0.00 4.46
2206 2446 6.314896 GCTTGCAGAAACATCTTATACTGTCT 59.685 38.462 0.00 0.00 0.00 3.41
2207 2447 6.314896 AGCTTGCAGAAACATCTTATACTGTC 59.685 38.462 0.00 0.00 0.00 3.51
2209 2449 6.093219 ACAGCTTGCAGAAACATCTTATACTG 59.907 38.462 0.00 0.00 0.00 2.74
2340 2581 9.327628 CACATAGTATAGTACTATCCGCAGTAT 57.672 37.037 18.68 10.82 46.22 2.12
2345 2586 7.470900 GTTCCACATAGTATAGTACTATCCGC 58.529 42.308 18.68 10.50 46.22 5.54
2365 2606 4.736611 ATATACTACTCCCTCCGTTCCA 57.263 45.455 0.00 0.00 0.00 3.53
2366 2607 6.944862 TCTTAATATACTACTCCCTCCGTTCC 59.055 42.308 0.00 0.00 0.00 3.62
2367 2608 7.992754 TCTTAATATACTACTCCCTCCGTTC 57.007 40.000 0.00 0.00 0.00 3.95
2368 2609 7.781693 TGTTCTTAATATACTACTCCCTCCGTT 59.218 37.037 0.00 0.00 0.00 4.44
2369 2610 7.293073 TGTTCTTAATATACTACTCCCTCCGT 58.707 38.462 0.00 0.00 0.00 4.69
2370 2611 7.094291 CCTGTTCTTAATATACTACTCCCTCCG 60.094 44.444 0.00 0.00 0.00 4.63
2371 2612 7.178805 CCCTGTTCTTAATATACTACTCCCTCC 59.821 44.444 0.00 0.00 0.00 4.30
2372 2613 7.729431 ACCCTGTTCTTAATATACTACTCCCTC 59.271 40.741 0.00 0.00 0.00 4.30
2373 2614 7.509659 CACCCTGTTCTTAATATACTACTCCCT 59.490 40.741 0.00 0.00 0.00 4.20
2374 2615 7.256225 CCACCCTGTTCTTAATATACTACTCCC 60.256 44.444 0.00 0.00 0.00 4.30
2376 2617 7.015389 AGCCACCCTGTTCTTAATATACTACTC 59.985 40.741 0.00 0.00 0.00 2.59
2377 2618 6.844917 AGCCACCCTGTTCTTAATATACTACT 59.155 38.462 0.00 0.00 0.00 2.57
2378 2619 6.929606 CAGCCACCCTGTTCTTAATATACTAC 59.070 42.308 0.00 0.00 36.79 2.73
2379 2620 6.042781 CCAGCCACCCTGTTCTTAATATACTA 59.957 42.308 0.00 0.00 40.06 1.82
2380 2621 5.163195 CCAGCCACCCTGTTCTTAATATACT 60.163 44.000 0.00 0.00 40.06 2.12
2381 2622 5.063880 CCAGCCACCCTGTTCTTAATATAC 58.936 45.833 0.00 0.00 40.06 1.47
2382 2623 4.724798 ACCAGCCACCCTGTTCTTAATATA 59.275 41.667 0.00 0.00 40.06 0.86
2383 2624 3.527665 ACCAGCCACCCTGTTCTTAATAT 59.472 43.478 0.00 0.00 40.06 1.28
2415 2656 4.100963 ACAATGTACGGATCAGCATAGGAA 59.899 41.667 0.00 0.00 0.00 3.36
2428 2669 5.183228 AGGAATAACAGGAACAATGTACGG 58.817 41.667 0.00 0.00 0.00 4.02
2433 2674 6.540189 CACTCCTAGGAATAACAGGAACAATG 59.460 42.308 13.77 0.00 38.00 2.82
2434 2675 6.443849 TCACTCCTAGGAATAACAGGAACAAT 59.556 38.462 13.77 0.00 38.00 2.71
2506 2747 6.276832 AGCTAAAATGATGAACACAGCAAT 57.723 33.333 0.00 0.00 33.72 3.56
2603 2847 2.112928 ATGGTGCACTGCGGAACA 59.887 55.556 17.98 4.35 36.91 3.18
2638 2882 3.010027 TGGGAACTTGTCATGGCAAGATA 59.990 43.478 39.24 20.13 46.34 1.98
2671 2915 2.906389 ACTGTGGTATTGGAGCAGAAGA 59.094 45.455 0.00 0.00 35.85 2.87
2681 2925 4.268644 CAGCGATTGTAGACTGTGGTATTG 59.731 45.833 0.00 0.00 0.00 1.90
2682 2926 4.433615 CAGCGATTGTAGACTGTGGTATT 58.566 43.478 0.00 0.00 0.00 1.89
2707 2951 2.231235 TCAACTGCATGTTCTAGCTCGA 59.769 45.455 0.00 0.00 36.63 4.04
2708 2952 2.610433 TCAACTGCATGTTCTAGCTCG 58.390 47.619 0.00 0.00 36.63 5.03
2717 2961 6.092955 AGTTTGATTGATTCAACTGCATGT 57.907 33.333 0.15 0.00 43.99 3.21
2718 2962 6.617741 GCAAGTTTGATTGATTCAACTGCATG 60.618 38.462 0.15 0.00 43.99 4.06
2757 3001 1.568612 CTCGCAGTGCATCCGTGTTT 61.569 55.000 16.83 0.00 0.00 2.83
2939 3183 3.131478 CGGATGCGGACCCCAAAC 61.131 66.667 0.00 0.00 0.00 2.93
2957 3201 0.389391 ATGAACCAGGAGTATCGCCG 59.611 55.000 0.00 0.00 34.37 6.46
3015 3259 1.620822 GCGGGCTCCATTTCCATATT 58.379 50.000 0.00 0.00 0.00 1.28
3017 3261 1.150536 GGCGGGCTCCATTTCCATA 59.849 57.895 0.00 0.00 0.00 2.74
3029 3273 2.828549 ATGACAATTCCGGCGGGC 60.829 61.111 27.98 1.72 0.00 6.13
3038 3282 4.401022 TGGAGCAAACTGAGATGACAATT 58.599 39.130 0.00 0.00 0.00 2.32
3056 3300 3.875727 CAGTAATGTGAGGCTGAATGGAG 59.124 47.826 0.00 0.00 0.00 3.86
3058 3302 2.947652 CCAGTAATGTGAGGCTGAATGG 59.052 50.000 0.00 0.00 0.00 3.16
3091 3335 4.008330 GCATGATATTGATAGCCTGCACT 58.992 43.478 10.32 0.00 39.18 4.40
3101 3345 4.276678 CCCGTTTCACTGCATGATATTGAT 59.723 41.667 0.00 0.00 37.11 2.57
3115 3359 2.822764 CCTGATAGTAGCCCGTTTCAC 58.177 52.381 0.00 0.00 0.00 3.18
3125 3369 1.323412 ACTCGGCAGCCTGATAGTAG 58.677 55.000 10.54 0.00 0.00 2.57
3155 3399 7.013083 GGCATCCCATCATACAGATTAATGATC 59.987 40.741 0.00 0.00 40.10 2.92
3160 3404 4.922206 GGGCATCCCATCATACAGATTAA 58.078 43.478 0.00 0.00 44.65 1.40
3223 3467 2.936498 ACAGGCACAATAGTTATCGCAC 59.064 45.455 0.00 0.00 0.00 5.34
3227 3471 7.169982 GTGATAGTCACAGGCACAATAGTTATC 59.830 40.741 5.28 0.00 46.22 1.75
3291 3535 4.562789 TCATCGAGACAAAAACTATGCTCG 59.437 41.667 0.00 0.00 41.44 5.03
3296 3540 8.608844 AAGACTTTCATCGAGACAAAAACTAT 57.391 30.769 0.00 0.00 0.00 2.12
3334 3578 2.567169 TGTAGTCTGTCCATCCACTTGG 59.433 50.000 0.00 0.00 38.18 3.61
3341 3585 4.808364 GCAGAGAAATGTAGTCTGTCCATC 59.192 45.833 0.00 0.00 39.98 3.51
3342 3586 4.469227 AGCAGAGAAATGTAGTCTGTCCAT 59.531 41.667 0.00 0.00 39.98 3.41
3343 3587 3.834813 AGCAGAGAAATGTAGTCTGTCCA 59.165 43.478 0.00 0.00 39.98 4.02
3344 3588 4.464069 AGCAGAGAAATGTAGTCTGTCC 57.536 45.455 0.00 0.00 39.98 4.02
3345 3589 5.473931 TCAAGCAGAGAAATGTAGTCTGTC 58.526 41.667 0.00 0.00 39.98 3.51
3415 3659 3.316308 ACTTGCTTGAACGATTTGAAGCT 59.684 39.130 10.40 0.00 41.19 3.74
3477 3721 8.627208 AGATGGCTCGATACAAATTCAAATAT 57.373 30.769 0.00 0.00 0.00 1.28
3514 3758 7.116948 CCGATTTGACTGCCAATTCTAGTATAG 59.883 40.741 0.00 0.00 35.72 1.31
3564 3808 2.378547 TGGAGCAAGATTAACCCCTGTT 59.621 45.455 0.00 0.00 38.52 3.16
3576 3820 1.281867 CCATGTAACCCTGGAGCAAGA 59.718 52.381 0.00 0.00 34.24 3.02
3652 3896 8.271487 GCAGCAACTTTCTTTCAATAGAAAAAG 58.729 33.333 0.00 0.00 42.78 2.27
3660 3904 3.069158 AGCTGCAGCAACTTTCTTTCAAT 59.931 39.130 38.24 11.50 45.16 2.57
3665 3909 4.861102 ATAAAGCTGCAGCAACTTTCTT 57.139 36.364 38.24 20.26 45.16 2.52
3675 3919 6.421801 GCCCAACATTATAAATAAAGCTGCAG 59.578 38.462 10.11 10.11 0.00 4.41
3679 3923 5.068460 TGCGCCCAACATTATAAATAAAGCT 59.932 36.000 4.18 0.00 0.00 3.74
3708 3952 6.920569 AACTATTTCGGACAACATGGTATC 57.079 37.500 0.00 0.00 0.00 2.24
3710 3954 8.795842 ATTTAACTATTTCGGACAACATGGTA 57.204 30.769 0.00 0.00 0.00 3.25
3735 3979 9.931698 TCCCTAATAAACTCTGTAAGACTGATA 57.068 33.333 0.00 0.00 38.67 2.15
3737 3981 7.342284 CCTCCCTAATAAACTCTGTAAGACTGA 59.658 40.741 0.00 0.00 38.67 3.41
3803 4048 1.063190 TCTCTGGAAGCCTCCCGAATA 60.063 52.381 0.00 0.00 41.64 1.75
3836 4081 5.732647 CGTATGCTAAAATCCGAACAACTTG 59.267 40.000 0.00 0.00 0.00 3.16
3879 4124 5.293569 GGTGATTAGCACGCTAATAACAAGT 59.706 40.000 28.51 9.27 45.60 3.16
3911 4157 4.471747 TCCCCTATGCACATACACTGTTTA 59.528 41.667 0.00 0.00 35.29 2.01
3930 4179 0.967662 GTAGGACGGAGCTTATCCCC 59.032 60.000 7.94 0.00 46.50 4.81
3940 4189 5.693104 GCACGATATTTATTTGTAGGACGGA 59.307 40.000 0.00 0.00 0.00 4.69
4020 4269 0.468226 TTGAGATAGGGCCGCGAAAT 59.532 50.000 8.23 0.00 0.00 2.17
4022 4271 1.040893 TCTTGAGATAGGGCCGCGAA 61.041 55.000 8.23 0.00 0.00 4.70
4023 4272 1.455032 TCTTGAGATAGGGCCGCGA 60.455 57.895 8.23 0.00 0.00 5.87
4026 4275 0.965439 CCTCTCTTGAGATAGGGCCG 59.035 60.000 0.00 0.00 42.73 6.13
4137 4386 3.064207 GTGTGTTGGAATAGTCTTCGCA 58.936 45.455 0.00 0.00 0.00 5.10
4143 4392 1.084289 GCGGGTGTGTTGGAATAGTC 58.916 55.000 0.00 0.00 0.00 2.59
4164 4413 2.223112 GGTCAACTGCAGTGCATTATCG 60.223 50.000 22.49 9.12 38.13 2.92
4192 4441 2.335681 TGTCTGTGGGGTCTTATGGA 57.664 50.000 0.00 0.00 0.00 3.41
4214 4463 6.381801 CCTCAATGGTGTTACTTGTTTCATC 58.618 40.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.