Multiple sequence alignment - TraesCS3A01G029900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G029900 chr3A 100.000 3670 0 0 1 3670 15700607 15704276 0.000000e+00 6778
1 TraesCS3A01G029900 chr3A 93.712 2449 123 15 835 3269 15561459 15559028 0.000000e+00 3640
2 TraesCS3A01G029900 chr3A 90.470 766 56 11 1895 2647 15560826 15560065 0.000000e+00 994
3 TraesCS3A01G029900 chr3A 89.501 762 65 7 1468 2227 15560401 15559653 0.000000e+00 950
4 TraesCS3A01G029900 chr3A 89.323 768 63 11 1895 2647 15702074 15702837 0.000000e+00 946
5 TraesCS3A01G029900 chr3A 89.323 768 63 11 1468 2231 15702501 15703253 0.000000e+00 946
6 TraesCS3A01G029900 chr3A 92.280 557 40 1 902 1455 15690185 15690741 0.000000e+00 787
7 TraesCS3A01G029900 chr3A 79.567 1155 138 54 2239 3349 15691617 15692717 0.000000e+00 736
8 TraesCS3A01G029900 chr3A 89.623 106 11 0 1215 1320 15690636 15690741 6.390000e-28 135
9 TraesCS3A01G029900 chr3A 88.043 92 7 3 1 90 15689543 15689632 5.010000e-19 106
10 TraesCS3A01G029900 chrUn 92.029 1380 92 9 1895 3269 35063121 35061755 0.000000e+00 1923
11 TraesCS3A01G029900 chrUn 94.094 745 39 3 499 1242 35064087 35063347 0.000000e+00 1127
12 TraesCS3A01G029900 chrUn 87.458 885 89 17 1351 2230 35063238 35062371 0.000000e+00 1000
13 TraesCS3A01G029900 chrUn 79.453 1134 136 49 2242 3337 35260772 35259698 0.000000e+00 713
14 TraesCS3A01G029900 chrUn 79.453 1134 136 49 2242 3337 35263609 35262535 0.000000e+00 713
15 TraesCS3A01G029900 chrUn 90.203 541 49 2 919 1455 35265028 35264488 0.000000e+00 702
16 TraesCS3A01G029900 chrUn 91.791 402 33 0 1054 1455 35262052 35261651 8.900000e-156 560
17 TraesCS3A01G029900 chrUn 88.435 441 26 7 93 508 35064547 35064107 3.270000e-140 508
18 TraesCS3A01G029900 chrUn 90.698 258 24 0 1162 1419 35063469 35063212 9.760000e-91 344
19 TraesCS3A01G029900 chrUn 88.803 259 28 1 925 1182 35423076 35423334 2.130000e-82 316
20 TraesCS3A01G029900 chrUn 84.892 139 21 0 1214 1352 35423417 35423555 1.370000e-29 141
21 TraesCS3A01G029900 chr3D 88.177 905 76 13 499 1377 5615957 5615058 0.000000e+00 1050
22 TraesCS3A01G029900 chr3D 81.124 1139 122 45 2242 3337 5614315 5613227 0.000000e+00 826
23 TraesCS3A01G029900 chr3D 89.716 282 20 2 86 367 5616514 5616242 5.830000e-93 351
24 TraesCS3A01G029900 chr3D 90.909 209 18 1 916 1123 41607414 41607622 2.790000e-71 279
25 TraesCS3A01G029900 chr3D 90.291 206 19 1 919 1123 5632024 5631819 6.040000e-68 268
26 TraesCS3A01G029900 chr3D 89.726 146 12 3 366 509 5616120 5615976 2.250000e-42 183
27 TraesCS3A01G029900 chr3B 84.321 861 93 18 2429 3269 12320652 12321490 0.000000e+00 804
28 TraesCS3A01G029900 chr3B 91.564 486 41 0 886 1371 12319179 12319664 0.000000e+00 671
29 TraesCS3A01G029900 chr3B 76.515 264 26 17 2239 2485 12320410 12320654 1.080000e-20 111
30 TraesCS3A01G029900 chr3B 77.540 187 27 3 1814 1985 12320410 12320596 8.390000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G029900 chr3A 15700607 15704276 3669 False 2890.000000 6778 92.882000 1 3670 3 chr3A.!!$F2 3669
1 TraesCS3A01G029900 chr3A 15559028 15561459 2431 True 1861.333333 3640 91.227667 835 3269 3 chr3A.!!$R1 2434
2 TraesCS3A01G029900 chr3A 15689543 15692717 3174 False 441.000000 787 87.378250 1 3349 4 chr3A.!!$F1 3348
3 TraesCS3A01G029900 chrUn 35061755 35064547 2792 True 980.400000 1923 90.542800 93 3269 5 chrUn.!!$R1 3176
4 TraesCS3A01G029900 chrUn 35259698 35265028 5330 True 672.000000 713 85.225000 919 3337 4 chrUn.!!$R2 2418
5 TraesCS3A01G029900 chr3D 5613227 5616514 3287 True 602.500000 1050 87.185750 86 3337 4 chr3D.!!$R2 3251
6 TraesCS3A01G029900 chr3B 12319179 12321490 2311 False 421.250000 804 82.485000 886 3269 4 chr3B.!!$F1 2383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.324943 ATTGGCTCCGTAACTGCTGT 59.675 50.0 0.0 0.0 0.0 4.40 F
1759 2453 0.037326 TGATGTCTGAAGGTGGCGAC 60.037 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1826 2520 0.033504 TCGCCACCTTCAGAAGTCAC 59.966 55.0 9.41 0.0 0.0 3.67 R
2807 6616 0.100503 ACGTGCTTGACAAAACCAGC 59.899 50.0 0.00 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.324943 ATTGGCTCCGTAACTGCTGT 59.675 50.000 0.00 0.00 0.00 4.40
52 53 2.673368 CGTAACTGCTGTCAATTCCTCC 59.327 50.000 0.00 0.00 0.00 4.30
63 64 6.183360 GCTGTCAATTCCTCCAGTATAAGGTA 60.183 42.308 0.00 0.00 34.12 3.08
65 66 7.963532 TGTCAATTCCTCCAGTATAAGGTATC 58.036 38.462 0.00 0.00 34.12 2.24
72 73 9.684702 TTCCTCCAGTATAAGGTATCCTATTTT 57.315 33.333 0.00 0.00 34.12 1.82
74 75 9.101325 CCTCCAGTATAAGGTATCCTATTTTCA 57.899 37.037 0.00 0.00 31.13 2.69
90 91 3.644966 TTTCATACCCTTGCTACCTGG 57.355 47.619 0.00 0.00 0.00 4.45
124 141 1.748493 TGCAAGCAAAGTTTTCTCCGT 59.252 42.857 0.00 0.00 0.00 4.69
132 149 4.510340 GCAAAGTTTTCTCCGTCAACTAGA 59.490 41.667 0.00 0.00 30.37 2.43
134 151 4.254402 AGTTTTCTCCGTCAACTAGACC 57.746 45.455 0.00 0.00 44.66 3.85
141 158 1.271656 CCGTCAACTAGACCCGTCTTT 59.728 52.381 2.08 0.00 44.66 2.52
171 188 7.548427 TGTTGAATTTCTGAACAAATCTTGCAA 59.452 29.630 0.00 0.00 0.00 4.08
197 214 1.704628 TCAGGACCCTGAGATTTTGCA 59.295 47.619 14.37 0.00 46.80 4.08
211 228 3.781079 TTTTGCAACTCTGGTGTGAAG 57.219 42.857 0.00 0.00 0.00 3.02
328 365 6.785337 AAAACATAGGGTGCCCTTAAATAC 57.215 37.500 15.82 0.00 45.70 1.89
333 370 3.631250 AGGGTGCCCTTAAATACATGTG 58.369 45.455 9.11 0.00 45.70 3.21
363 400 2.420022 GACTGGCTGCACGACAATAATT 59.580 45.455 0.50 0.00 0.00 1.40
396 556 8.641498 ATTTGTCATCAATAGAACTTTCACCT 57.359 30.769 0.00 0.00 33.32 4.00
598 1013 9.823647 ATACTAAGTTTATGGAATGTGTCTGAG 57.176 33.333 0.00 0.00 0.00 3.35
830 1272 7.849804 ACTCAGTTAGCAAATACATAACCAG 57.150 36.000 0.00 0.00 31.21 4.00
831 1273 6.316390 ACTCAGTTAGCAAATACATAACCAGC 59.684 38.462 0.00 0.00 31.21 4.85
832 1274 6.176896 TCAGTTAGCAAATACATAACCAGCA 58.823 36.000 0.00 0.00 31.21 4.41
833 1275 6.316140 TCAGTTAGCAAATACATAACCAGCAG 59.684 38.462 0.00 0.00 31.21 4.24
1074 1523 2.106566 AGCGATGAGGAGACTGTTCAT 58.893 47.619 0.00 0.00 44.43 2.57
1209 1658 1.065564 GGAAGTCAAGATGAGCAGGCT 60.066 52.381 0.00 0.00 0.00 4.58
1389 1880 2.498167 AGTCAAGATGTGCAGGTTGTC 58.502 47.619 0.00 0.00 0.00 3.18
1599 2288 5.055265 TCCCCTTTTGTCATTACAGTTGA 57.945 39.130 0.00 0.00 36.83 3.18
1726 2420 2.360475 GCAGGCCTGACTTCCACC 60.360 66.667 37.21 12.12 0.00 4.61
1727 2421 2.046892 CAGGCCTGACTTCCACCG 60.047 66.667 29.88 0.00 0.00 4.94
1728 2422 4.021925 AGGCCTGACTTCCACCGC 62.022 66.667 3.11 0.00 0.00 5.68
1729 2423 4.021925 GGCCTGACTTCCACCGCT 62.022 66.667 0.00 0.00 0.00 5.52
1730 2424 2.435059 GCCTGACTTCCACCGCTC 60.435 66.667 0.00 0.00 0.00 5.03
1731 2425 2.266055 CCTGACTTCCACCGCTCC 59.734 66.667 0.00 0.00 0.00 4.70
1732 2426 2.125912 CTGACTTCCACCGCTCCG 60.126 66.667 0.00 0.00 0.00 4.63
1733 2427 2.599281 TGACTTCCACCGCTCCGA 60.599 61.111 0.00 0.00 0.00 4.55
1734 2428 2.154798 CTGACTTCCACCGCTCCGAA 62.155 60.000 0.00 0.00 0.00 4.30
1735 2429 1.446272 GACTTCCACCGCTCCGAAG 60.446 63.158 0.00 0.00 39.13 3.79
1748 2442 3.359194 CCGAAGGCTCTGATGTCTG 57.641 57.895 0.00 0.00 46.14 3.51
1749 2443 0.820226 CCGAAGGCTCTGATGTCTGA 59.180 55.000 0.00 0.00 46.14 3.27
1750 2444 1.205655 CCGAAGGCTCTGATGTCTGAA 59.794 52.381 0.00 0.00 46.14 3.02
1751 2445 2.538437 CGAAGGCTCTGATGTCTGAAG 58.462 52.381 0.00 0.00 0.00 3.02
1752 2446 2.738000 CGAAGGCTCTGATGTCTGAAGG 60.738 54.545 0.00 0.00 0.00 3.46
1753 2447 1.949799 AGGCTCTGATGTCTGAAGGT 58.050 50.000 0.00 0.00 0.00 3.50
1754 2448 1.554160 AGGCTCTGATGTCTGAAGGTG 59.446 52.381 0.00 0.00 0.00 4.00
1755 2449 1.406614 GGCTCTGATGTCTGAAGGTGG 60.407 57.143 0.00 0.00 0.00 4.61
1756 2450 2.011046 GCTCTGATGTCTGAAGGTGGC 61.011 57.143 0.00 0.00 0.00 5.01
1757 2451 0.247460 TCTGATGTCTGAAGGTGGCG 59.753 55.000 0.00 0.00 0.00 5.69
1758 2452 0.247460 CTGATGTCTGAAGGTGGCGA 59.753 55.000 0.00 0.00 0.00 5.54
1759 2453 0.037326 TGATGTCTGAAGGTGGCGAC 60.037 55.000 0.00 0.00 0.00 5.19
1760 2454 0.037326 GATGTCTGAAGGTGGCGACA 60.037 55.000 0.00 0.00 40.27 4.35
1770 2464 2.191908 TGGCGACACAAAGCTGGT 59.808 55.556 0.00 0.00 33.40 4.00
1771 2465 2.186160 TGGCGACACAAAGCTGGTG 61.186 57.895 15.20 15.20 41.95 4.17
1772 2466 1.891919 GGCGACACAAAGCTGGTGA 60.892 57.895 21.71 0.00 39.53 4.02
1773 2467 1.571460 GCGACACAAAGCTGGTGAG 59.429 57.895 21.71 15.98 39.53 3.51
1774 2468 0.880278 GCGACACAAAGCTGGTGAGA 60.880 55.000 21.71 0.00 39.53 3.27
1775 2469 1.143305 CGACACAAAGCTGGTGAGAG 58.857 55.000 21.71 10.55 39.53 3.20
1776 2470 0.871057 GACACAAAGCTGGTGAGAGC 59.129 55.000 21.71 7.51 39.53 4.09
1777 2471 0.882042 ACACAAAGCTGGTGAGAGCG 60.882 55.000 21.71 0.00 44.24 5.03
1778 2472 0.601046 CACAAAGCTGGTGAGAGCGA 60.601 55.000 12.23 0.00 44.24 4.93
1779 2473 0.106708 ACAAAGCTGGTGAGAGCGAA 59.893 50.000 4.72 0.00 44.24 4.70
1780 2474 0.795085 CAAAGCTGGTGAGAGCGAAG 59.205 55.000 0.00 0.00 44.24 3.79
1781 2475 0.321122 AAAGCTGGTGAGAGCGAAGG 60.321 55.000 0.00 0.00 44.24 3.46
1782 2476 1.476007 AAGCTGGTGAGAGCGAAGGT 61.476 55.000 0.00 0.00 44.24 3.50
1783 2477 1.739562 GCTGGTGAGAGCGAAGGTG 60.740 63.158 0.00 0.00 39.88 4.00
1784 2478 1.967535 CTGGTGAGAGCGAAGGTGA 59.032 57.895 0.00 0.00 39.88 4.02
1785 2479 0.318441 CTGGTGAGAGCGAAGGTGAA 59.682 55.000 0.00 0.00 39.88 3.18
1786 2480 0.756294 TGGTGAGAGCGAAGGTGAAA 59.244 50.000 0.00 0.00 39.88 2.69
1787 2481 1.149148 GGTGAGAGCGAAGGTGAAAC 58.851 55.000 0.00 0.00 39.88 2.78
1788 2482 0.784778 GTGAGAGCGAAGGTGAAACG 59.215 55.000 0.00 0.00 39.88 3.60
1789 2483 0.387929 TGAGAGCGAAGGTGAAACGT 59.612 50.000 0.00 0.00 39.88 3.99
1790 2484 1.061485 GAGAGCGAAGGTGAAACGTC 58.939 55.000 0.00 0.00 39.88 4.34
1791 2485 0.319641 AGAGCGAAGGTGAAACGTCC 60.320 55.000 0.00 0.00 39.88 4.79
1792 2486 0.319641 GAGCGAAGGTGAAACGTCCT 60.320 55.000 0.00 0.00 39.88 3.85
1793 2487 0.963962 AGCGAAGGTGAAACGTCCTA 59.036 50.000 0.00 0.00 38.12 2.94
1794 2488 1.067776 AGCGAAGGTGAAACGTCCTAG 60.068 52.381 0.00 0.00 38.12 3.02
1795 2489 1.992170 CGAAGGTGAAACGTCCTAGG 58.008 55.000 0.82 0.82 38.12 3.02
1796 2490 1.542915 CGAAGGTGAAACGTCCTAGGA 59.457 52.381 7.62 7.62 38.12 2.94
1797 2491 2.029649 CGAAGGTGAAACGTCCTAGGAA 60.030 50.000 14.65 0.00 38.12 3.36
1798 2492 3.586892 GAAGGTGAAACGTCCTAGGAAG 58.413 50.000 21.61 21.61 38.12 3.46
1799 2493 2.885616 AGGTGAAACGTCCTAGGAAGA 58.114 47.619 28.69 5.75 38.12 2.87
1800 2494 3.236896 AGGTGAAACGTCCTAGGAAGAA 58.763 45.455 28.69 10.15 38.12 2.52
1801 2495 3.006644 AGGTGAAACGTCCTAGGAAGAAC 59.993 47.826 28.69 19.11 38.12 3.01
1802 2496 3.324117 GTGAAACGTCCTAGGAAGAACC 58.676 50.000 28.69 16.64 39.35 3.62
1803 2497 2.967201 TGAAACGTCCTAGGAAGAACCA 59.033 45.455 28.69 18.63 42.04 3.67
1804 2498 3.243975 TGAAACGTCCTAGGAAGAACCAC 60.244 47.826 28.69 15.23 42.04 4.16
1805 2499 1.264295 ACGTCCTAGGAAGAACCACC 58.736 55.000 28.69 6.70 42.04 4.61
1806 2500 1.263356 CGTCCTAGGAAGAACCACCA 58.737 55.000 18.97 0.00 42.04 4.17
1807 2501 1.831736 CGTCCTAGGAAGAACCACCAT 59.168 52.381 18.97 0.00 42.04 3.55
1808 2502 3.028850 CGTCCTAGGAAGAACCACCATA 58.971 50.000 18.97 0.00 42.04 2.74
1809 2503 3.181478 CGTCCTAGGAAGAACCACCATAC 60.181 52.174 18.97 0.00 42.04 2.39
1810 2504 3.134262 GTCCTAGGAAGAACCACCATACC 59.866 52.174 14.65 0.00 42.04 2.73
1811 2505 2.102588 CCTAGGAAGAACCACCATACCG 59.897 54.545 1.05 0.00 42.04 4.02
1812 2506 0.909623 AGGAAGAACCACCATACCGG 59.090 55.000 0.00 0.00 42.04 5.28
1819 2513 2.367202 CCACCATACCGGCACTCCT 61.367 63.158 0.00 0.00 39.03 3.69
1826 2520 0.535335 TACCGGCACTCCTAAAGCTG 59.465 55.000 0.00 0.00 0.00 4.24
2567 6365 0.607489 CTGCAGGCCTAACTTGCACT 60.607 55.000 12.26 0.00 0.00 4.40
2610 6408 2.032634 GGTGGCGACGCAAATCTGA 61.033 57.895 23.09 0.00 44.70 3.27
2635 6433 2.740447 GTGGGAAGGTGAAACATCGTAC 59.260 50.000 0.00 0.00 39.98 3.67
2776 6585 0.110104 CCCCCATCTCTCTGCATTCC 59.890 60.000 0.00 0.00 0.00 3.01
2807 6616 2.697751 TCAGTTGTGGGTGATTTTTGGG 59.302 45.455 0.00 0.00 0.00 4.12
2825 6634 0.594796 GGCTGGTTTTGTCAAGCACG 60.595 55.000 0.00 0.00 0.00 5.34
2931 6745 2.205022 TTTTGCCATCCTGTCTCCAG 57.795 50.000 0.00 0.00 38.50 3.86
2963 6777 6.451393 TGTAACCAAACCAACAATAGATTGC 58.549 36.000 2.09 0.00 41.38 3.56
3022 6849 2.022764 AAGTGTGTTTTGGCTTTGGC 57.977 45.000 0.00 0.00 37.82 4.52
3040 6867 1.134280 GGCAGATGAAGGCTGAAGCTA 60.134 52.381 1.74 0.00 41.70 3.32
3041 6868 2.486907 GGCAGATGAAGGCTGAAGCTAT 60.487 50.000 1.74 0.00 41.70 2.97
3042 6869 3.244353 GGCAGATGAAGGCTGAAGCTATA 60.244 47.826 1.74 0.00 41.70 1.31
3043 6870 4.565236 GGCAGATGAAGGCTGAAGCTATAT 60.565 45.833 1.74 0.00 41.70 0.86
3044 6871 5.337894 GGCAGATGAAGGCTGAAGCTATATA 60.338 44.000 1.74 0.00 41.70 0.86
3045 6872 6.347696 GCAGATGAAGGCTGAAGCTATATAT 58.652 40.000 1.74 0.00 41.70 0.86
3142 6975 5.943416 ACATAAGTGCTATTTGCTGTGGTTA 59.057 36.000 0.00 0.00 43.37 2.85
3183 7016 6.290294 AGCATTACATTTCTGCCTTGAAAT 57.710 33.333 0.00 0.00 44.57 2.17
3283 7119 4.181010 ATGCCACGGCCAGCTAGG 62.181 66.667 2.24 0.00 41.09 3.02
3291 7127 0.534412 CGGCCAGCTAGGAGATATGG 59.466 60.000 2.24 0.00 41.22 2.74
3304 7140 7.882271 GCTAGGAGATATGGATCTGACAAAAAT 59.118 37.037 0.00 0.00 42.80 1.82
3308 7144 6.073314 AGATATGGATCTGACAAAAATGGGG 58.927 40.000 0.00 0.00 41.12 4.96
3311 7147 3.026694 GGATCTGACAAAAATGGGGAGG 58.973 50.000 0.00 0.00 0.00 4.30
3312 7148 2.603075 TCTGACAAAAATGGGGAGGG 57.397 50.000 0.00 0.00 0.00 4.30
3315 7151 1.186200 GACAAAAATGGGGAGGGAGC 58.814 55.000 0.00 0.00 0.00 4.70
3318 7154 1.084018 AAAAATGGGGAGGGAGCAGA 58.916 50.000 0.00 0.00 0.00 4.26
3327 7165 1.903183 GGAGGGAGCAGACTAGTTTGT 59.097 52.381 14.34 2.32 0.00 2.83
3337 7175 0.320771 ACTAGTTTGTGAGGGCGCAG 60.321 55.000 10.83 0.00 35.67 5.18
3338 7176 0.320771 CTAGTTTGTGAGGGCGCAGT 60.321 55.000 10.83 0.00 35.67 4.40
3341 7179 0.602905 GTTTGTGAGGGCGCAGTACT 60.603 55.000 10.83 0.37 35.67 2.73
3379 7217 6.790285 TGTTCGATTTAACAAACTACTCCC 57.210 37.500 0.00 0.00 36.45 4.30
3380 7218 6.527423 TGTTCGATTTAACAAACTACTCCCT 58.473 36.000 0.00 0.00 36.45 4.20
3381 7219 6.647895 TGTTCGATTTAACAAACTACTCCCTC 59.352 38.462 0.00 0.00 36.45 4.30
3382 7220 5.727434 TCGATTTAACAAACTACTCCCTCC 58.273 41.667 0.00 0.00 0.00 4.30
3383 7221 4.874396 CGATTTAACAAACTACTCCCTCCC 59.126 45.833 0.00 0.00 0.00 4.30
3384 7222 5.338137 CGATTTAACAAACTACTCCCTCCCT 60.338 44.000 0.00 0.00 0.00 4.20
3385 7223 5.494390 TTTAACAAACTACTCCCTCCCTC 57.506 43.478 0.00 0.00 0.00 4.30
3386 7224 3.277416 AACAAACTACTCCCTCCCTCT 57.723 47.619 0.00 0.00 0.00 3.69
3387 7225 2.541466 ACAAACTACTCCCTCCCTCTG 58.459 52.381 0.00 0.00 0.00 3.35
3388 7226 2.158143 ACAAACTACTCCCTCCCTCTGT 60.158 50.000 0.00 0.00 0.00 3.41
3389 7227 3.077088 ACAAACTACTCCCTCCCTCTGTA 59.923 47.826 0.00 0.00 0.00 2.74
3390 7228 3.385314 AACTACTCCCTCCCTCTGTAC 57.615 52.381 0.00 0.00 0.00 2.90
3391 7229 2.285707 ACTACTCCCTCCCTCTGTACA 58.714 52.381 0.00 0.00 0.00 2.90
3392 7230 2.653366 ACTACTCCCTCCCTCTGTACAA 59.347 50.000 0.00 0.00 0.00 2.41
3393 7231 2.715763 ACTCCCTCCCTCTGTACAAA 57.284 50.000 0.00 0.00 0.00 2.83
3394 7232 2.986050 ACTCCCTCCCTCTGTACAAAA 58.014 47.619 0.00 0.00 0.00 2.44
3395 7233 3.532102 ACTCCCTCCCTCTGTACAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
3396 7234 4.695606 ACTCCCTCCCTCTGTACAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
3397 7235 4.470304 ACTCCCTCCCTCTGTACAAAATAC 59.530 45.833 0.00 0.00 0.00 1.89
3398 7236 4.695606 TCCCTCCCTCTGTACAAAATACT 58.304 43.478 0.00 0.00 0.00 2.12
3399 7237 5.098663 TCCCTCCCTCTGTACAAAATACTT 58.901 41.667 0.00 0.00 0.00 2.24
3400 7238 5.045869 TCCCTCCCTCTGTACAAAATACTTG 60.046 44.000 0.00 0.00 0.00 3.16
3401 7239 5.280521 CCCTCCCTCTGTACAAAATACTTGT 60.281 44.000 0.00 0.00 36.49 3.16
3402 7240 6.070424 CCCTCCCTCTGTACAAAATACTTGTA 60.070 42.308 0.00 0.00 34.11 2.41
3403 7241 7.391620 CCTCCCTCTGTACAAAATACTTGTAA 58.608 38.462 0.00 0.00 36.74 2.41
3404 7242 8.047310 CCTCCCTCTGTACAAAATACTTGTAAT 58.953 37.037 0.00 0.00 36.74 1.89
3405 7243 9.449719 CTCCCTCTGTACAAAATACTTGTAATT 57.550 33.333 0.00 0.00 36.74 1.40
3406 7244 9.226606 TCCCTCTGTACAAAATACTTGTAATTG 57.773 33.333 0.00 7.61 36.74 2.32
3407 7245 8.458843 CCCTCTGTACAAAATACTTGTAATTGG 58.541 37.037 0.00 1.38 36.74 3.16
3408 7246 8.458843 CCTCTGTACAAAATACTTGTAATTGGG 58.541 37.037 0.00 0.00 36.74 4.12
3409 7247 8.343168 TCTGTACAAAATACTTGTAATTGGGG 57.657 34.615 0.00 0.00 36.74 4.96
3410 7248 7.394923 TCTGTACAAAATACTTGTAATTGGGGG 59.605 37.037 0.00 0.00 36.74 5.40
3411 7249 7.239438 TGTACAAAATACTTGTAATTGGGGGA 58.761 34.615 0.00 0.00 36.74 4.81
3412 7250 7.728981 TGTACAAAATACTTGTAATTGGGGGAA 59.271 33.333 0.00 0.00 36.74 3.97
3413 7251 6.999950 ACAAAATACTTGTAATTGGGGGAAC 58.000 36.000 11.56 0.00 0.00 3.62
3414 7252 6.785466 ACAAAATACTTGTAATTGGGGGAACT 59.215 34.615 11.56 0.00 0.00 3.01
3415 7253 7.291416 ACAAAATACTTGTAATTGGGGGAACTT 59.709 33.333 11.56 0.00 0.00 2.66
3416 7254 6.850752 AATACTTGTAATTGGGGGAACTTG 57.149 37.500 0.00 0.00 0.00 3.16
3417 7255 3.506398 ACTTGTAATTGGGGGAACTTGG 58.494 45.455 0.00 0.00 0.00 3.61
3418 7256 3.141272 ACTTGTAATTGGGGGAACTTGGA 59.859 43.478 0.00 0.00 0.00 3.53
3419 7257 3.449746 TGTAATTGGGGGAACTTGGAG 57.550 47.619 0.00 0.00 0.00 3.86
3420 7258 2.719705 TGTAATTGGGGGAACTTGGAGT 59.280 45.455 0.00 0.00 0.00 3.85
3421 7259 3.917629 TGTAATTGGGGGAACTTGGAGTA 59.082 43.478 0.00 0.00 0.00 2.59
3422 7260 4.542525 TGTAATTGGGGGAACTTGGAGTAT 59.457 41.667 0.00 0.00 0.00 2.12
3423 7261 5.732170 TGTAATTGGGGGAACTTGGAGTATA 59.268 40.000 0.00 0.00 0.00 1.47
3424 7262 5.806955 AATTGGGGGAACTTGGAGTATAA 57.193 39.130 0.00 0.00 0.00 0.98
3425 7263 5.806955 ATTGGGGGAACTTGGAGTATAAA 57.193 39.130 0.00 0.00 0.00 1.40
3426 7264 5.806955 TTGGGGGAACTTGGAGTATAAAT 57.193 39.130 0.00 0.00 0.00 1.40
3427 7265 5.124036 TGGGGGAACTTGGAGTATAAATG 57.876 43.478 0.00 0.00 0.00 2.32
3428 7266 4.791334 TGGGGGAACTTGGAGTATAAATGA 59.209 41.667 0.00 0.00 0.00 2.57
3429 7267 5.104109 TGGGGGAACTTGGAGTATAAATGAG 60.104 44.000 0.00 0.00 0.00 2.90
3430 7268 4.822350 GGGGAACTTGGAGTATAAATGAGC 59.178 45.833 0.00 0.00 0.00 4.26
3431 7269 5.437060 GGGAACTTGGAGTATAAATGAGCA 58.563 41.667 0.00 0.00 0.00 4.26
3432 7270 5.529060 GGGAACTTGGAGTATAAATGAGCAG 59.471 44.000 0.00 0.00 0.00 4.24
3433 7271 6.116126 GGAACTTGGAGTATAAATGAGCAGT 58.884 40.000 0.00 0.00 0.00 4.40
3434 7272 7.272978 GGAACTTGGAGTATAAATGAGCAGTA 58.727 38.462 0.00 0.00 0.00 2.74
3435 7273 7.439655 GGAACTTGGAGTATAAATGAGCAGTAG 59.560 40.741 0.00 0.00 0.00 2.57
3436 7274 7.661536 ACTTGGAGTATAAATGAGCAGTAGA 57.338 36.000 0.00 0.00 0.00 2.59
3437 7275 7.721402 ACTTGGAGTATAAATGAGCAGTAGAG 58.279 38.462 0.00 0.00 0.00 2.43
3438 7276 7.561722 ACTTGGAGTATAAATGAGCAGTAGAGA 59.438 37.037 0.00 0.00 0.00 3.10
3439 7277 7.517614 TGGAGTATAAATGAGCAGTAGAGAG 57.482 40.000 0.00 0.00 0.00 3.20
3440 7278 7.290813 TGGAGTATAAATGAGCAGTAGAGAGA 58.709 38.462 0.00 0.00 0.00 3.10
3441 7279 7.947332 TGGAGTATAAATGAGCAGTAGAGAGAT 59.053 37.037 0.00 0.00 0.00 2.75
3442 7280 9.456147 GGAGTATAAATGAGCAGTAGAGAGATA 57.544 37.037 0.00 0.00 0.00 1.98
3449 7287 9.896645 AAATGAGCAGTAGAGAGATATTTGAAA 57.103 29.630 0.00 0.00 0.00 2.69
3450 7288 9.896645 AATGAGCAGTAGAGAGATATTTGAAAA 57.103 29.630 0.00 0.00 0.00 2.29
3479 7317 9.979578 AATAAATAAATCATTTGCGCCATTAGA 57.020 25.926 4.18 0.00 37.42 2.10
3480 7318 7.935338 AAATAAATCATTTGCGCCATTAGAG 57.065 32.000 4.18 0.00 35.46 2.43
3481 7319 6.882610 ATAAATCATTTGCGCCATTAGAGA 57.117 33.333 4.18 0.00 0.00 3.10
3482 7320 5.581126 AAATCATTTGCGCCATTAGAGAA 57.419 34.783 4.18 0.00 0.00 2.87
3483 7321 4.825546 ATCATTTGCGCCATTAGAGAAG 57.174 40.909 4.18 0.00 0.00 2.85
3484 7322 2.355756 TCATTTGCGCCATTAGAGAAGC 59.644 45.455 4.18 0.00 0.00 3.86
3485 7323 2.113860 TTTGCGCCATTAGAGAAGCT 57.886 45.000 4.18 0.00 0.00 3.74
3486 7324 2.979814 TTGCGCCATTAGAGAAGCTA 57.020 45.000 4.18 0.00 0.00 3.32
3487 7325 2.979814 TGCGCCATTAGAGAAGCTAA 57.020 45.000 4.18 0.00 42.92 3.09
3488 7326 2.550978 TGCGCCATTAGAGAAGCTAAC 58.449 47.619 4.18 0.00 41.64 2.34
3489 7327 2.093711 TGCGCCATTAGAGAAGCTAACA 60.094 45.455 4.18 0.00 41.64 2.41
3490 7328 2.936498 GCGCCATTAGAGAAGCTAACAA 59.064 45.455 0.00 0.00 41.64 2.83
3491 7329 3.561725 GCGCCATTAGAGAAGCTAACAAT 59.438 43.478 0.00 0.00 41.64 2.71
3492 7330 4.553547 GCGCCATTAGAGAAGCTAACAATG 60.554 45.833 0.00 0.00 41.64 2.82
3493 7331 4.553547 CGCCATTAGAGAAGCTAACAATGC 60.554 45.833 0.00 0.00 41.64 3.56
3494 7332 4.336433 GCCATTAGAGAAGCTAACAATGCA 59.664 41.667 0.00 0.00 41.64 3.96
3495 7333 5.009410 GCCATTAGAGAAGCTAACAATGCAT 59.991 40.000 0.00 0.00 41.64 3.96
3496 7334 6.436261 CCATTAGAGAAGCTAACAATGCATG 58.564 40.000 0.00 0.00 41.64 4.06
3497 7335 6.261603 CCATTAGAGAAGCTAACAATGCATGA 59.738 38.462 0.00 0.00 41.64 3.07
3498 7336 7.040617 CCATTAGAGAAGCTAACAATGCATGAT 60.041 37.037 0.00 0.00 41.64 2.45
3499 7337 7.870509 TTAGAGAAGCTAACAATGCATGATT 57.129 32.000 0.00 0.00 34.21 2.57
3500 7338 6.770746 AGAGAAGCTAACAATGCATGATTT 57.229 33.333 0.00 0.00 0.00 2.17
3501 7339 7.870509 AGAGAAGCTAACAATGCATGATTTA 57.129 32.000 0.00 0.00 0.00 1.40
3502 7340 7.701445 AGAGAAGCTAACAATGCATGATTTAC 58.299 34.615 0.00 0.00 0.00 2.01
3503 7341 7.555554 AGAGAAGCTAACAATGCATGATTTACT 59.444 33.333 0.00 0.00 0.00 2.24
3504 7342 7.701445 AGAAGCTAACAATGCATGATTTACTC 58.299 34.615 0.00 0.00 0.00 2.59
3505 7343 6.382869 AGCTAACAATGCATGATTTACTCC 57.617 37.500 0.00 0.00 0.00 3.85
3506 7344 6.125029 AGCTAACAATGCATGATTTACTCCT 58.875 36.000 0.00 0.00 0.00 3.69
3507 7345 7.282585 AGCTAACAATGCATGATTTACTCCTA 58.717 34.615 0.00 0.00 0.00 2.94
3508 7346 7.227512 AGCTAACAATGCATGATTTACTCCTAC 59.772 37.037 0.00 0.00 0.00 3.18
3509 7347 7.012327 GCTAACAATGCATGATTTACTCCTACA 59.988 37.037 0.00 0.00 0.00 2.74
3510 7348 7.701539 AACAATGCATGATTTACTCCTACAA 57.298 32.000 0.00 0.00 0.00 2.41
3511 7349 7.701539 ACAATGCATGATTTACTCCTACAAA 57.298 32.000 0.00 0.00 0.00 2.83
3512 7350 8.121305 ACAATGCATGATTTACTCCTACAAAA 57.879 30.769 0.00 0.00 0.00 2.44
3513 7351 8.752187 ACAATGCATGATTTACTCCTACAAAAT 58.248 29.630 0.00 0.00 0.00 1.82
3514 7352 9.590451 CAATGCATGATTTACTCCTACAAAATT 57.410 29.630 0.00 0.00 0.00 1.82
3540 7378 6.803154 AACTCAAATACACTCTTAGGTTGC 57.197 37.500 0.00 0.00 0.00 4.17
3541 7379 6.115448 ACTCAAATACACTCTTAGGTTGCT 57.885 37.500 0.00 0.00 0.00 3.91
3542 7380 6.166982 ACTCAAATACACTCTTAGGTTGCTC 58.833 40.000 0.00 0.00 0.00 4.26
3543 7381 5.488341 TCAAATACACTCTTAGGTTGCTCC 58.512 41.667 0.00 0.00 0.00 4.70
3544 7382 3.802948 ATACACTCTTAGGTTGCTCCG 57.197 47.619 0.00 0.00 41.99 4.63
3545 7383 1.339097 ACACTCTTAGGTTGCTCCGT 58.661 50.000 0.00 0.00 41.99 4.69
3546 7384 1.692519 ACACTCTTAGGTTGCTCCGTT 59.307 47.619 0.00 0.00 41.99 4.44
3547 7385 2.895404 ACACTCTTAGGTTGCTCCGTTA 59.105 45.455 0.00 0.00 41.99 3.18
3548 7386 3.322828 ACACTCTTAGGTTGCTCCGTTAA 59.677 43.478 0.00 0.00 41.99 2.01
3549 7387 3.678548 CACTCTTAGGTTGCTCCGTTAAC 59.321 47.826 0.00 0.00 41.99 2.01
3550 7388 3.577415 ACTCTTAGGTTGCTCCGTTAACT 59.423 43.478 3.71 0.00 41.99 2.24
3551 7389 4.174762 CTCTTAGGTTGCTCCGTTAACTC 58.825 47.826 3.71 0.00 41.99 3.01
3552 7390 3.056322 TCTTAGGTTGCTCCGTTAACTCC 60.056 47.826 3.71 0.00 41.99 3.85
3553 7391 1.349067 AGGTTGCTCCGTTAACTCCT 58.651 50.000 3.71 0.00 41.99 3.69
3554 7392 1.002087 AGGTTGCTCCGTTAACTCCTG 59.998 52.381 3.71 0.00 41.99 3.86
3555 7393 1.270678 GGTTGCTCCGTTAACTCCTGT 60.271 52.381 3.71 0.00 0.00 4.00
3556 7394 2.028748 GGTTGCTCCGTTAACTCCTGTA 60.029 50.000 3.71 0.00 0.00 2.74
3557 7395 3.555586 GGTTGCTCCGTTAACTCCTGTAA 60.556 47.826 3.71 0.00 0.00 2.41
3558 7396 3.308438 TGCTCCGTTAACTCCTGTAAC 57.692 47.619 3.71 0.00 0.00 2.50
3559 7397 2.028748 TGCTCCGTTAACTCCTGTAACC 60.029 50.000 3.71 0.00 0.00 2.85
3560 7398 2.233186 GCTCCGTTAACTCCTGTAACCT 59.767 50.000 3.71 0.00 0.00 3.50
3561 7399 3.306571 GCTCCGTTAACTCCTGTAACCTT 60.307 47.826 3.71 0.00 0.00 3.50
3562 7400 4.492611 CTCCGTTAACTCCTGTAACCTTC 58.507 47.826 3.71 0.00 0.00 3.46
3563 7401 3.057315 TCCGTTAACTCCTGTAACCTTCG 60.057 47.826 3.71 0.00 0.00 3.79
3564 7402 3.248266 CGTTAACTCCTGTAACCTTCGG 58.752 50.000 3.71 0.00 0.00 4.30
3565 7403 3.593096 GTTAACTCCTGTAACCTTCGGG 58.407 50.000 0.00 0.00 41.87 5.14
3566 7404 0.981943 AACTCCTGTAACCTTCGGGG 59.018 55.000 0.00 0.00 40.03 5.73
3567 7405 1.221021 CTCCTGTAACCTTCGGGGC 59.779 63.158 0.00 0.00 40.03 5.80
3568 7406 2.253403 CTCCTGTAACCTTCGGGGCC 62.253 65.000 0.00 0.00 40.03 5.80
3569 7407 2.298661 CCTGTAACCTTCGGGGCCT 61.299 63.158 0.84 0.00 40.03 5.19
3570 7408 1.683441 CTGTAACCTTCGGGGCCTT 59.317 57.895 0.84 0.00 40.03 4.35
3571 7409 0.676782 CTGTAACCTTCGGGGCCTTG 60.677 60.000 0.84 0.00 40.03 3.61
3572 7410 2.044555 GTAACCTTCGGGGCCTTGC 61.045 63.158 0.84 0.00 40.03 4.01
3609 7447 9.706691 AAGAAATTGAAGTGTAAGTCTAATCGA 57.293 29.630 0.00 0.00 0.00 3.59
3610 7448 9.141400 AGAAATTGAAGTGTAAGTCTAATCGAC 57.859 33.333 0.00 0.00 43.17 4.20
3645 7483 8.480133 AGATAATCTTGGTCGACTTATTAGGT 57.520 34.615 16.46 0.00 0.00 3.08
3646 7484 9.584008 AGATAATCTTGGTCGACTTATTAGGTA 57.416 33.333 16.46 0.00 0.00 3.08
3647 7485 9.623350 GATAATCTTGGTCGACTTATTAGGTAC 57.377 37.037 16.46 0.00 0.00 3.34
3648 7486 7.414222 AATCTTGGTCGACTTATTAGGTACA 57.586 36.000 16.46 0.00 0.00 2.90
3649 7487 7.598759 ATCTTGGTCGACTTATTAGGTACAT 57.401 36.000 16.46 0.00 0.00 2.29
3650 7488 8.701908 ATCTTGGTCGACTTATTAGGTACATA 57.298 34.615 16.46 0.00 0.00 2.29
3651 7489 8.523915 TCTTGGTCGACTTATTAGGTACATAA 57.476 34.615 16.46 1.96 0.00 1.90
3652 7490 8.408601 TCTTGGTCGACTTATTAGGTACATAAC 58.591 37.037 16.46 0.00 0.00 1.89
3653 7491 7.643569 TGGTCGACTTATTAGGTACATAACA 57.356 36.000 16.46 0.00 0.00 2.41
3654 7492 8.241497 TGGTCGACTTATTAGGTACATAACAT 57.759 34.615 16.46 0.00 0.00 2.71
3655 7493 8.139350 TGGTCGACTTATTAGGTACATAACATG 58.861 37.037 16.46 0.00 0.00 3.21
3656 7494 7.597743 GGTCGACTTATTAGGTACATAACATGG 59.402 40.741 16.46 0.00 33.60 3.66
3657 7495 8.355169 GTCGACTTATTAGGTACATAACATGGA 58.645 37.037 8.70 0.00 33.60 3.41
3658 7496 8.916062 TCGACTTATTAGGTACATAACATGGAA 58.084 33.333 1.42 0.00 33.60 3.53
3659 7497 8.975439 CGACTTATTAGGTACATAACATGGAAC 58.025 37.037 1.42 0.00 33.60 3.62
3660 7498 9.269453 GACTTATTAGGTACATAACATGGAACC 57.731 37.037 1.42 5.31 39.41 3.62
3661 7499 8.774183 ACTTATTAGGTACATAACATGGAACCA 58.226 33.333 1.42 0.00 40.73 3.67
3662 7500 9.793259 CTTATTAGGTACATAACATGGAACCAT 57.207 33.333 1.42 0.00 40.73 3.55
3667 7505 8.463930 AGGTACATAACATGGAACCATATTTG 57.536 34.615 6.00 5.94 40.73 2.32
3668 7506 8.058847 AGGTACATAACATGGAACCATATTTGT 58.941 33.333 6.00 10.50 40.73 2.83
3669 7507 9.344772 GGTACATAACATGGAACCATATTTGTA 57.655 33.333 6.00 9.71 39.12 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.415491 GCCAATCTTCTTAAACACGGGC 60.415 50.000 0.00 0.00 0.00 6.13
10 11 3.181520 CGGAGCCAATCTTCTTAAACACG 60.182 47.826 0.00 0.00 0.00 4.49
12 13 4.015872 ACGGAGCCAATCTTCTTAAACA 57.984 40.909 0.00 0.00 0.00 2.83
13 14 5.642491 AGTTACGGAGCCAATCTTCTTAAAC 59.358 40.000 0.00 0.00 0.00 2.01
42 43 7.313731 AGGATACCTTATACTGGAGGAATTGA 58.686 38.462 0.00 0.00 36.84 2.57
63 64 6.332901 AGGTAGCAAGGGTATGAAAATAGGAT 59.667 38.462 0.00 0.00 0.00 3.24
65 66 5.765182 CAGGTAGCAAGGGTATGAAAATAGG 59.235 44.000 0.00 0.00 0.00 2.57
72 73 1.837439 CACCAGGTAGCAAGGGTATGA 59.163 52.381 0.00 0.00 31.05 2.15
74 75 0.546598 GCACCAGGTAGCAAGGGTAT 59.453 55.000 8.64 0.00 31.05 2.73
82 83 2.742589 GTTTACAAGAGCACCAGGTAGC 59.257 50.000 0.00 0.00 0.00 3.58
90 91 2.033299 TGCTTGCAGTTTACAAGAGCAC 59.967 45.455 7.64 0.00 45.99 4.40
124 141 1.968493 AGCAAAGACGGGTCTAGTTGA 59.032 47.619 14.37 0.00 39.39 3.18
132 149 1.757682 TTCAACAAGCAAAGACGGGT 58.242 45.000 0.00 0.00 0.00 5.28
134 151 4.442073 CAGAAATTCAACAAGCAAAGACGG 59.558 41.667 0.00 0.00 0.00 4.79
141 158 7.267128 AGATTTGTTCAGAAATTCAACAAGCA 58.733 30.769 10.22 0.90 40.25 3.91
197 214 3.914426 ACTGAACTTCACACCAGAGTT 57.086 42.857 0.00 0.00 0.00 3.01
317 354 8.629158 TCATAAACATCACATGTATTTAAGGGC 58.371 33.333 0.00 0.00 44.07 5.19
328 365 4.732647 GCAGCCAGTCATAAACATCACATG 60.733 45.833 0.00 0.00 0.00 3.21
333 370 2.223112 CGTGCAGCCAGTCATAAACATC 60.223 50.000 0.00 0.00 0.00 3.06
596 1011 4.257731 GACACTGAGAAATTCCTTCCCTC 58.742 47.826 0.00 0.00 34.21 4.30
598 1013 3.753797 GTGACACTGAGAAATTCCTTCCC 59.246 47.826 0.00 0.00 34.21 3.97
651 1067 7.825331 TGTAAGTCAAAACCAAACCATGATA 57.175 32.000 0.00 0.00 0.00 2.15
718 1138 7.639113 TGTATTAAATAGAAAGCCTTGTGGG 57.361 36.000 0.00 0.00 38.36 4.61
719 1139 9.921637 TTTTGTATTAAATAGAAAGCCTTGTGG 57.078 29.630 0.00 0.00 30.93 4.17
794 1214 8.712285 TTTGCTAACTGAGTATACCACAATAC 57.288 34.615 0.00 0.00 33.33 1.89
830 1272 1.468736 GCTGAAAAGGTATGCTGCTGC 60.469 52.381 8.89 8.89 40.20 5.25
831 1273 2.089980 AGCTGAAAAGGTATGCTGCTG 58.910 47.619 0.00 0.00 34.84 4.41
832 1274 2.503895 AGCTGAAAAGGTATGCTGCT 57.496 45.000 0.00 0.00 32.32 4.24
833 1275 3.582714 AAAGCTGAAAAGGTATGCTGC 57.417 42.857 0.00 0.00 33.96 5.25
1074 1523 3.986996 TGAGTTGCAATCTGATCCTCA 57.013 42.857 0.59 5.97 0.00 3.86
1209 1658 1.479730 TCATTGGCTGCAACAAACACA 59.520 42.857 0.50 0.00 0.00 3.72
1389 1880 0.997932 CTTCGCTAGCTGCAACAGAG 59.002 55.000 13.93 0.00 43.06 3.35
1599 2288 8.721478 GGATCGTTTGCATGATAAATATGTACT 58.279 33.333 0.00 0.00 0.00 2.73
1726 2420 1.591059 CATCAGAGCCTTCGGAGCG 60.591 63.158 0.00 0.00 31.02 5.03
1727 2421 0.529555 GACATCAGAGCCTTCGGAGC 60.530 60.000 0.00 0.00 31.02 4.70
1728 2422 1.110442 AGACATCAGAGCCTTCGGAG 58.890 55.000 0.00 0.00 31.02 4.63
1729 2423 0.820226 CAGACATCAGAGCCTTCGGA 59.180 55.000 0.00 0.00 32.06 4.55
1730 2424 0.820226 TCAGACATCAGAGCCTTCGG 59.180 55.000 0.00 0.00 0.00 4.30
1731 2425 2.538437 CTTCAGACATCAGAGCCTTCG 58.462 52.381 0.00 0.00 0.00 3.79
1732 2426 2.235898 ACCTTCAGACATCAGAGCCTTC 59.764 50.000 0.00 0.00 0.00 3.46
1733 2427 2.027377 CACCTTCAGACATCAGAGCCTT 60.027 50.000 0.00 0.00 0.00 4.35
1734 2428 1.554160 CACCTTCAGACATCAGAGCCT 59.446 52.381 0.00 0.00 0.00 4.58
1735 2429 1.406614 CCACCTTCAGACATCAGAGCC 60.407 57.143 0.00 0.00 0.00 4.70
1736 2430 2.011046 GCCACCTTCAGACATCAGAGC 61.011 57.143 0.00 0.00 0.00 4.09
1737 2431 1.738365 CGCCACCTTCAGACATCAGAG 60.738 57.143 0.00 0.00 0.00 3.35
1738 2432 0.247460 CGCCACCTTCAGACATCAGA 59.753 55.000 0.00 0.00 0.00 3.27
1739 2433 0.247460 TCGCCACCTTCAGACATCAG 59.753 55.000 0.00 0.00 0.00 2.90
1740 2434 0.037326 GTCGCCACCTTCAGACATCA 60.037 55.000 0.00 0.00 34.09 3.07
1741 2435 0.037326 TGTCGCCACCTTCAGACATC 60.037 55.000 0.00 0.00 38.52 3.06
1742 2436 0.320771 GTGTCGCCACCTTCAGACAT 60.321 55.000 0.41 0.00 44.10 3.06
1743 2437 1.069090 GTGTCGCCACCTTCAGACA 59.931 57.895 0.00 0.00 40.77 3.41
1744 2438 0.531974 TTGTGTCGCCACCTTCAGAC 60.532 55.000 0.00 0.00 41.09 3.51
1745 2439 0.179234 TTTGTGTCGCCACCTTCAGA 59.821 50.000 0.00 0.00 41.09 3.27
1746 2440 0.588252 CTTTGTGTCGCCACCTTCAG 59.412 55.000 0.00 0.00 41.09 3.02
1747 2441 1.444119 GCTTTGTGTCGCCACCTTCA 61.444 55.000 0.00 0.00 41.09 3.02
1748 2442 1.166531 AGCTTTGTGTCGCCACCTTC 61.167 55.000 0.00 0.00 41.09 3.46
1749 2443 1.152963 AGCTTTGTGTCGCCACCTT 60.153 52.632 0.00 0.00 41.09 3.50
1750 2444 1.893808 CAGCTTTGTGTCGCCACCT 60.894 57.895 0.00 0.00 41.09 4.00
1751 2445 2.639286 CAGCTTTGTGTCGCCACC 59.361 61.111 0.00 0.00 41.09 4.61
1752 2446 2.186826 ACCAGCTTTGTGTCGCCAC 61.187 57.895 0.00 0.00 42.19 5.01
1753 2447 2.186160 CACCAGCTTTGTGTCGCCA 61.186 57.895 5.19 0.00 0.00 5.69
1754 2448 1.845809 CTCACCAGCTTTGTGTCGCC 61.846 60.000 11.78 0.00 35.25 5.54
1755 2449 0.880278 TCTCACCAGCTTTGTGTCGC 60.880 55.000 11.78 0.00 35.25 5.19
1756 2450 1.143305 CTCTCACCAGCTTTGTGTCG 58.857 55.000 11.78 6.13 35.25 4.35
1757 2451 0.871057 GCTCTCACCAGCTTTGTGTC 59.129 55.000 11.78 0.00 36.38 3.67
1758 2452 0.882042 CGCTCTCACCAGCTTTGTGT 60.882 55.000 11.78 0.00 37.25 3.72
1759 2453 0.601046 TCGCTCTCACCAGCTTTGTG 60.601 55.000 6.78 6.78 37.25 3.33
1760 2454 0.106708 TTCGCTCTCACCAGCTTTGT 59.893 50.000 0.00 0.00 37.25 2.83
1761 2455 0.795085 CTTCGCTCTCACCAGCTTTG 59.205 55.000 0.00 0.00 37.25 2.77
1762 2456 0.321122 CCTTCGCTCTCACCAGCTTT 60.321 55.000 0.00 0.00 37.25 3.51
1763 2457 1.294780 CCTTCGCTCTCACCAGCTT 59.705 57.895 0.00 0.00 37.25 3.74
1764 2458 1.910772 ACCTTCGCTCTCACCAGCT 60.911 57.895 0.00 0.00 37.25 4.24
1765 2459 1.739562 CACCTTCGCTCTCACCAGC 60.740 63.158 0.00 0.00 35.90 4.85
1766 2460 0.318441 TTCACCTTCGCTCTCACCAG 59.682 55.000 0.00 0.00 0.00 4.00
1767 2461 0.756294 TTTCACCTTCGCTCTCACCA 59.244 50.000 0.00 0.00 0.00 4.17
1768 2462 1.149148 GTTTCACCTTCGCTCTCACC 58.851 55.000 0.00 0.00 0.00 4.02
1769 2463 0.784778 CGTTTCACCTTCGCTCTCAC 59.215 55.000 0.00 0.00 0.00 3.51
1770 2464 0.387929 ACGTTTCACCTTCGCTCTCA 59.612 50.000 0.00 0.00 0.00 3.27
1771 2465 1.061485 GACGTTTCACCTTCGCTCTC 58.939 55.000 0.00 0.00 0.00 3.20
1772 2466 0.319641 GGACGTTTCACCTTCGCTCT 60.320 55.000 0.00 0.00 0.00 4.09
1773 2467 0.319641 AGGACGTTTCACCTTCGCTC 60.320 55.000 0.00 0.00 31.95 5.03
1774 2468 0.963962 TAGGACGTTTCACCTTCGCT 59.036 50.000 0.00 0.00 37.68 4.93
1775 2469 1.347320 CTAGGACGTTTCACCTTCGC 58.653 55.000 0.00 0.00 37.68 4.70
1776 2470 1.542915 TCCTAGGACGTTTCACCTTCG 59.457 52.381 7.62 0.00 37.68 3.79
1777 2471 3.257624 TCTTCCTAGGACGTTTCACCTTC 59.742 47.826 12.22 0.00 37.68 3.46
1778 2472 3.236896 TCTTCCTAGGACGTTTCACCTT 58.763 45.455 12.22 0.00 37.68 3.50
1779 2473 2.885616 TCTTCCTAGGACGTTTCACCT 58.114 47.619 12.22 0.00 39.95 4.00
1780 2474 3.324117 GTTCTTCCTAGGACGTTTCACC 58.676 50.000 12.22 0.00 0.00 4.02
1781 2475 3.243975 TGGTTCTTCCTAGGACGTTTCAC 60.244 47.826 12.22 6.11 37.07 3.18
1782 2476 2.967201 TGGTTCTTCCTAGGACGTTTCA 59.033 45.455 12.22 5.11 37.07 2.69
1783 2477 3.324117 GTGGTTCTTCCTAGGACGTTTC 58.676 50.000 12.22 2.33 37.07 2.78
1784 2478 2.038164 GGTGGTTCTTCCTAGGACGTTT 59.962 50.000 12.22 0.00 37.07 3.60
1785 2479 1.622312 GGTGGTTCTTCCTAGGACGTT 59.378 52.381 12.22 0.00 37.07 3.99
1786 2480 1.264295 GGTGGTTCTTCCTAGGACGT 58.736 55.000 12.22 0.00 37.07 4.34
1787 2481 1.263356 TGGTGGTTCTTCCTAGGACG 58.737 55.000 12.22 10.43 37.07 4.79
1788 2482 3.134262 GGTATGGTGGTTCTTCCTAGGAC 59.866 52.174 12.22 0.00 37.07 3.85
1789 2483 3.381335 GGTATGGTGGTTCTTCCTAGGA 58.619 50.000 7.62 7.62 37.07 2.94
1790 2484 2.102588 CGGTATGGTGGTTCTTCCTAGG 59.897 54.545 0.82 0.82 37.07 3.02
1791 2485 2.102588 CCGGTATGGTGGTTCTTCCTAG 59.897 54.545 0.00 0.00 37.07 3.02
1792 2486 2.112998 CCGGTATGGTGGTTCTTCCTA 58.887 52.381 0.00 0.00 37.07 2.94
1793 2487 0.909623 CCGGTATGGTGGTTCTTCCT 59.090 55.000 0.00 0.00 37.07 3.36
1794 2488 0.746923 GCCGGTATGGTGGTTCTTCC 60.747 60.000 1.90 0.00 41.21 3.46
1795 2489 0.035820 TGCCGGTATGGTGGTTCTTC 60.036 55.000 1.90 0.00 41.21 2.87
1796 2490 0.322187 GTGCCGGTATGGTGGTTCTT 60.322 55.000 1.90 0.00 41.21 2.52
1797 2491 1.198759 AGTGCCGGTATGGTGGTTCT 61.199 55.000 1.90 0.00 41.21 3.01
1798 2492 0.743345 GAGTGCCGGTATGGTGGTTC 60.743 60.000 1.90 0.00 41.21 3.62
1799 2493 1.298667 GAGTGCCGGTATGGTGGTT 59.701 57.895 1.90 0.00 41.21 3.67
1800 2494 2.666098 GGAGTGCCGGTATGGTGGT 61.666 63.158 1.90 0.00 41.21 4.16
1801 2495 1.046472 TAGGAGTGCCGGTATGGTGG 61.046 60.000 1.90 0.00 41.21 4.61
1802 2496 0.828022 TTAGGAGTGCCGGTATGGTG 59.172 55.000 1.90 0.00 41.21 4.17
1803 2497 1.485066 CTTTAGGAGTGCCGGTATGGT 59.515 52.381 1.90 0.00 41.21 3.55
1804 2498 1.810412 GCTTTAGGAGTGCCGGTATGG 60.810 57.143 1.90 0.00 39.96 2.74
1805 2499 1.139058 AGCTTTAGGAGTGCCGGTATG 59.861 52.381 1.90 0.00 39.96 2.39
1806 2500 1.139058 CAGCTTTAGGAGTGCCGGTAT 59.861 52.381 1.90 0.00 39.96 2.73
1807 2501 0.535335 CAGCTTTAGGAGTGCCGGTA 59.465 55.000 1.90 0.00 39.96 4.02
1808 2502 1.296715 CAGCTTTAGGAGTGCCGGT 59.703 57.895 1.90 0.00 39.96 5.28
1809 2503 1.021390 CACAGCTTTAGGAGTGCCGG 61.021 60.000 0.00 0.00 39.96 6.13
1810 2504 0.037326 TCACAGCTTTAGGAGTGCCG 60.037 55.000 0.00 0.00 39.96 5.69
1811 2505 1.002544 AGTCACAGCTTTAGGAGTGCC 59.997 52.381 0.00 0.00 32.25 5.01
1812 2506 2.464157 AGTCACAGCTTTAGGAGTGC 57.536 50.000 0.00 0.00 32.25 4.40
1819 2513 4.380531 CACCTTCAGAAGTCACAGCTTTA 58.619 43.478 9.41 0.00 0.00 1.85
1826 2520 0.033504 TCGCCACCTTCAGAAGTCAC 59.966 55.000 9.41 0.00 0.00 3.67
2610 6408 3.690460 GATGTTTCACCTTCCCACTCAT 58.310 45.455 0.00 0.00 0.00 2.90
2635 6433 0.458025 GCAGGGTCGGTAGTTCTTCG 60.458 60.000 0.00 0.00 0.00 3.79
2684 6483 4.499183 AGATGAACTACAGCAACAGTAGC 58.501 43.478 0.00 0.00 42.04 3.58
2776 6585 4.021104 TCACCCACAACTGACATTCTAGAG 60.021 45.833 0.00 0.00 0.00 2.43
2807 6616 0.100503 ACGTGCTTGACAAAACCAGC 59.899 50.000 0.00 0.00 0.00 4.85
2825 6634 6.349860 GGTTCACCAAAATACCACCTAATGAC 60.350 42.308 0.00 0.00 35.64 3.06
2931 6745 2.790433 TGGTTTGGTTACATCTCAGCC 58.210 47.619 0.00 0.00 0.00 4.85
2963 6777 5.856126 AATGCAATTGCTCTCACAAATTG 57.144 34.783 29.37 0.00 42.66 2.32
3005 6832 1.134848 TCTGCCAAAGCCAAAACACAC 60.135 47.619 0.00 0.00 38.69 3.82
3006 6833 1.189752 TCTGCCAAAGCCAAAACACA 58.810 45.000 0.00 0.00 38.69 3.72
3008 6835 2.037901 TCATCTGCCAAAGCCAAAACA 58.962 42.857 0.00 0.00 38.69 2.83
3010 6837 2.037511 CCTTCATCTGCCAAAGCCAAAA 59.962 45.455 0.00 0.00 38.69 2.44
3061 6888 8.624776 CACTCACACTAGTACATTCATCTATGA 58.375 37.037 0.00 0.00 34.44 2.15
3064 6891 7.939784 ACACTCACACTAGTACATTCATCTA 57.060 36.000 0.00 0.00 0.00 1.98
3092 6925 2.186532 TAACATTACCAGGCGTGCAA 57.813 45.000 0.00 0.00 0.00 4.08
3127 6960 7.698130 GCTTGTATTCTTAACCACAGCAAATAG 59.302 37.037 0.00 0.00 0.00 1.73
3129 6962 6.209391 AGCTTGTATTCTTAACCACAGCAAAT 59.791 34.615 0.00 0.00 0.00 2.32
3260 7096 3.610619 CTGGCCGTGGCATGTCTGA 62.611 63.158 13.76 0.00 44.11 3.27
3283 7119 6.208204 CCCCATTTTTGTCAGATCCATATCTC 59.792 42.308 0.00 0.00 40.65 2.75
3291 7127 3.026694 CCCTCCCCATTTTTGTCAGATC 58.973 50.000 0.00 0.00 0.00 2.75
3304 7140 1.311403 CTAGTCTGCTCCCTCCCCA 59.689 63.158 0.00 0.00 0.00 4.96
3308 7144 2.563179 TCACAAACTAGTCTGCTCCCTC 59.437 50.000 0.00 0.00 0.00 4.30
3311 7147 2.354203 CCCTCACAAACTAGTCTGCTCC 60.354 54.545 0.00 0.00 0.00 4.70
3312 7148 2.933056 GCCCTCACAAACTAGTCTGCTC 60.933 54.545 0.00 0.00 0.00 4.26
3315 7151 1.714794 CGCCCTCACAAACTAGTCTG 58.285 55.000 0.00 0.00 0.00 3.51
3318 7154 0.320771 CTGCGCCCTCACAAACTAGT 60.321 55.000 4.18 0.00 0.00 2.57
3327 7165 3.717842 AAAAAGTACTGCGCCCTCA 57.282 47.368 4.18 0.00 0.00 3.86
3355 7193 6.993902 AGGGAGTAGTTTGTTAAATCGAACAA 59.006 34.615 0.00 0.00 45.29 2.83
3356 7194 6.527423 AGGGAGTAGTTTGTTAAATCGAACA 58.473 36.000 0.00 0.00 37.54 3.18
3357 7195 6.091849 GGAGGGAGTAGTTTGTTAAATCGAAC 59.908 42.308 0.00 0.00 33.33 3.95
3358 7196 6.168389 GGAGGGAGTAGTTTGTTAAATCGAA 58.832 40.000 0.00 0.00 0.00 3.71
3359 7197 5.337813 GGGAGGGAGTAGTTTGTTAAATCGA 60.338 44.000 0.00 0.00 0.00 3.59
3360 7198 4.874396 GGGAGGGAGTAGTTTGTTAAATCG 59.126 45.833 0.00 0.00 0.00 3.34
3361 7199 6.063496 AGGGAGGGAGTAGTTTGTTAAATC 57.937 41.667 0.00 0.00 0.00 2.17
3362 7200 5.791141 AGAGGGAGGGAGTAGTTTGTTAAAT 59.209 40.000 0.00 0.00 0.00 1.40
3363 7201 5.012768 CAGAGGGAGGGAGTAGTTTGTTAAA 59.987 44.000 0.00 0.00 0.00 1.52
3364 7202 4.530946 CAGAGGGAGGGAGTAGTTTGTTAA 59.469 45.833 0.00 0.00 0.00 2.01
3365 7203 4.094476 CAGAGGGAGGGAGTAGTTTGTTA 58.906 47.826 0.00 0.00 0.00 2.41
3366 7204 2.907042 CAGAGGGAGGGAGTAGTTTGTT 59.093 50.000 0.00 0.00 0.00 2.83
3367 7205 2.158143 ACAGAGGGAGGGAGTAGTTTGT 60.158 50.000 0.00 0.00 0.00 2.83
3368 7206 2.541466 ACAGAGGGAGGGAGTAGTTTG 58.459 52.381 0.00 0.00 0.00 2.93
3369 7207 3.077088 TGTACAGAGGGAGGGAGTAGTTT 59.923 47.826 0.00 0.00 0.00 2.66
3370 7208 2.653366 TGTACAGAGGGAGGGAGTAGTT 59.347 50.000 0.00 0.00 0.00 2.24
3371 7209 2.285707 TGTACAGAGGGAGGGAGTAGT 58.714 52.381 0.00 0.00 0.00 2.73
3372 7210 3.383698 TTGTACAGAGGGAGGGAGTAG 57.616 52.381 0.00 0.00 0.00 2.57
3373 7211 3.839323 TTTGTACAGAGGGAGGGAGTA 57.161 47.619 0.00 0.00 0.00 2.59
3374 7212 2.715763 TTTGTACAGAGGGAGGGAGT 57.284 50.000 0.00 0.00 0.00 3.85
3375 7213 4.717280 AGTATTTTGTACAGAGGGAGGGAG 59.283 45.833 0.00 0.00 0.00 4.30
3376 7214 4.695606 AGTATTTTGTACAGAGGGAGGGA 58.304 43.478 0.00 0.00 0.00 4.20
3377 7215 5.186198 CAAGTATTTTGTACAGAGGGAGGG 58.814 45.833 0.00 0.00 0.00 4.30
3378 7216 5.805728 ACAAGTATTTTGTACAGAGGGAGG 58.194 41.667 0.00 0.00 0.00 4.30
3379 7217 9.449719 AATTACAAGTATTTTGTACAGAGGGAG 57.550 33.333 0.00 0.00 34.93 4.30
3380 7218 9.226606 CAATTACAAGTATTTTGTACAGAGGGA 57.773 33.333 0.00 0.00 34.93 4.20
3381 7219 8.458843 CCAATTACAAGTATTTTGTACAGAGGG 58.541 37.037 0.00 0.00 34.93 4.30
3382 7220 8.458843 CCCAATTACAAGTATTTTGTACAGAGG 58.541 37.037 0.00 1.39 34.93 3.69
3383 7221 8.458843 CCCCAATTACAAGTATTTTGTACAGAG 58.541 37.037 0.00 0.00 34.93 3.35
3384 7222 7.394923 CCCCCAATTACAAGTATTTTGTACAGA 59.605 37.037 0.00 0.00 34.93 3.41
3385 7223 7.394923 TCCCCCAATTACAAGTATTTTGTACAG 59.605 37.037 0.00 0.00 34.93 2.74
3386 7224 7.239438 TCCCCCAATTACAAGTATTTTGTACA 58.761 34.615 0.00 0.00 34.93 2.90
3387 7225 7.706100 TCCCCCAATTACAAGTATTTTGTAC 57.294 36.000 0.00 0.00 34.93 2.90
3388 7226 7.951245 AGTTCCCCCAATTACAAGTATTTTGTA 59.049 33.333 0.00 0.00 34.11 2.41
3389 7227 6.785466 AGTTCCCCCAATTACAAGTATTTTGT 59.215 34.615 0.00 0.00 36.49 2.83
3390 7228 7.239763 AGTTCCCCCAATTACAAGTATTTTG 57.760 36.000 0.00 0.00 0.00 2.44
3391 7229 7.256511 CCAAGTTCCCCCAATTACAAGTATTTT 60.257 37.037 0.00 0.00 0.00 1.82
3392 7230 6.212589 CCAAGTTCCCCCAATTACAAGTATTT 59.787 38.462 0.00 0.00 0.00 1.40
3393 7231 5.719563 CCAAGTTCCCCCAATTACAAGTATT 59.280 40.000 0.00 0.00 0.00 1.89
3394 7232 5.015817 TCCAAGTTCCCCCAATTACAAGTAT 59.984 40.000 0.00 0.00 0.00 2.12
3395 7233 4.354387 TCCAAGTTCCCCCAATTACAAGTA 59.646 41.667 0.00 0.00 0.00 2.24
3396 7234 3.141272 TCCAAGTTCCCCCAATTACAAGT 59.859 43.478 0.00 0.00 0.00 3.16
3397 7235 3.763897 CTCCAAGTTCCCCCAATTACAAG 59.236 47.826 0.00 0.00 0.00 3.16
3398 7236 3.141272 ACTCCAAGTTCCCCCAATTACAA 59.859 43.478 0.00 0.00 0.00 2.41
3399 7237 2.719705 ACTCCAAGTTCCCCCAATTACA 59.280 45.455 0.00 0.00 0.00 2.41
3400 7238 3.451402 ACTCCAAGTTCCCCCAATTAC 57.549 47.619 0.00 0.00 0.00 1.89
3401 7239 6.911993 TTATACTCCAAGTTCCCCCAATTA 57.088 37.500 0.00 0.00 0.00 1.40
3402 7240 5.806955 TTATACTCCAAGTTCCCCCAATT 57.193 39.130 0.00 0.00 0.00 2.32
3403 7241 5.806955 TTTATACTCCAAGTTCCCCCAAT 57.193 39.130 0.00 0.00 0.00 3.16
3404 7242 5.254267 TCATTTATACTCCAAGTTCCCCCAA 59.746 40.000 0.00 0.00 0.00 4.12
3405 7243 4.791334 TCATTTATACTCCAAGTTCCCCCA 59.209 41.667 0.00 0.00 0.00 4.96
3406 7244 5.377478 CTCATTTATACTCCAAGTTCCCCC 58.623 45.833 0.00 0.00 0.00 5.40
3407 7245 4.822350 GCTCATTTATACTCCAAGTTCCCC 59.178 45.833 0.00 0.00 0.00 4.81
3408 7246 5.437060 TGCTCATTTATACTCCAAGTTCCC 58.563 41.667 0.00 0.00 0.00 3.97
3409 7247 6.116126 ACTGCTCATTTATACTCCAAGTTCC 58.884 40.000 0.00 0.00 0.00 3.62
3410 7248 8.198109 TCTACTGCTCATTTATACTCCAAGTTC 58.802 37.037 0.00 0.00 0.00 3.01
3411 7249 8.079211 TCTACTGCTCATTTATACTCCAAGTT 57.921 34.615 0.00 0.00 0.00 2.66
3412 7250 7.561722 TCTCTACTGCTCATTTATACTCCAAGT 59.438 37.037 0.00 0.00 0.00 3.16
3413 7251 7.946207 TCTCTACTGCTCATTTATACTCCAAG 58.054 38.462 0.00 0.00 0.00 3.61
3414 7252 7.780271 TCTCTCTACTGCTCATTTATACTCCAA 59.220 37.037 0.00 0.00 0.00 3.53
3415 7253 7.290813 TCTCTCTACTGCTCATTTATACTCCA 58.709 38.462 0.00 0.00 0.00 3.86
3416 7254 7.753309 TCTCTCTACTGCTCATTTATACTCC 57.247 40.000 0.00 0.00 0.00 3.85
3423 7261 9.896645 TTTCAAATATCTCTCTACTGCTCATTT 57.103 29.630 0.00 0.00 0.00 2.32
3424 7262 9.896645 TTTTCAAATATCTCTCTACTGCTCATT 57.103 29.630 0.00 0.00 0.00 2.57
3453 7291 9.979578 TCTAATGGCGCAAATGATTTATTTATT 57.020 25.926 10.83 0.00 36.87 1.40
3454 7292 9.630098 CTCTAATGGCGCAAATGATTTATTTAT 57.370 29.630 10.83 0.00 36.87 1.40
3455 7293 8.845227 TCTCTAATGGCGCAAATGATTTATTTA 58.155 29.630 10.83 0.00 36.87 1.40
3456 7294 7.715657 TCTCTAATGGCGCAAATGATTTATTT 58.284 30.769 10.83 0.00 39.55 1.40
3457 7295 7.275888 TCTCTAATGGCGCAAATGATTTATT 57.724 32.000 10.83 0.00 0.00 1.40
3458 7296 6.882610 TCTCTAATGGCGCAAATGATTTAT 57.117 33.333 10.83 0.00 0.00 1.40
3459 7297 6.691754 TTCTCTAATGGCGCAAATGATTTA 57.308 33.333 10.83 0.00 0.00 1.40
3460 7298 5.581126 TTCTCTAATGGCGCAAATGATTT 57.419 34.783 10.83 0.00 0.00 2.17
3461 7299 4.498682 GCTTCTCTAATGGCGCAAATGATT 60.499 41.667 10.83 1.39 0.00 2.57
3462 7300 3.004106 GCTTCTCTAATGGCGCAAATGAT 59.996 43.478 10.83 0.00 0.00 2.45
3463 7301 2.355756 GCTTCTCTAATGGCGCAAATGA 59.644 45.455 10.83 0.00 0.00 2.57
3464 7302 2.357009 AGCTTCTCTAATGGCGCAAATG 59.643 45.455 10.83 0.00 0.00 2.32
3465 7303 2.648059 AGCTTCTCTAATGGCGCAAAT 58.352 42.857 10.83 0.00 0.00 2.32
3466 7304 2.113860 AGCTTCTCTAATGGCGCAAA 57.886 45.000 10.83 0.00 0.00 3.68
3467 7305 2.936498 GTTAGCTTCTCTAATGGCGCAA 59.064 45.455 10.83 0.00 39.29 4.85
3468 7306 2.093711 TGTTAGCTTCTCTAATGGCGCA 60.094 45.455 10.83 0.00 39.29 6.09
3469 7307 2.550978 TGTTAGCTTCTCTAATGGCGC 58.449 47.619 0.00 0.00 39.29 6.53
3470 7308 4.553547 GCATTGTTAGCTTCTCTAATGGCG 60.554 45.833 0.00 0.00 39.29 5.69
3471 7309 4.336433 TGCATTGTTAGCTTCTCTAATGGC 59.664 41.667 0.00 0.00 39.29 4.40
3472 7310 6.261603 TCATGCATTGTTAGCTTCTCTAATGG 59.738 38.462 0.00 0.00 39.29 3.16
3473 7311 7.255491 TCATGCATTGTTAGCTTCTCTAATG 57.745 36.000 0.00 0.00 39.29 1.90
3474 7312 8.461249 AATCATGCATTGTTAGCTTCTCTAAT 57.539 30.769 0.00 0.00 39.29 1.73
3475 7313 7.870509 AATCATGCATTGTTAGCTTCTCTAA 57.129 32.000 0.00 0.00 35.02 2.10
3476 7314 7.870509 AAATCATGCATTGTTAGCTTCTCTA 57.129 32.000 0.00 0.00 0.00 2.43
3477 7315 6.770746 AAATCATGCATTGTTAGCTTCTCT 57.229 33.333 0.00 0.00 0.00 3.10
3478 7316 7.701445 AGTAAATCATGCATTGTTAGCTTCTC 58.299 34.615 0.00 0.00 0.00 2.87
3479 7317 7.201767 GGAGTAAATCATGCATTGTTAGCTTCT 60.202 37.037 0.00 0.00 0.00 2.85
3480 7318 6.914757 GGAGTAAATCATGCATTGTTAGCTTC 59.085 38.462 0.00 0.00 0.00 3.86
3481 7319 6.604795 AGGAGTAAATCATGCATTGTTAGCTT 59.395 34.615 0.00 0.00 0.00 3.74
3482 7320 6.125029 AGGAGTAAATCATGCATTGTTAGCT 58.875 36.000 0.00 0.00 0.00 3.32
3483 7321 6.382869 AGGAGTAAATCATGCATTGTTAGC 57.617 37.500 0.00 0.00 0.00 3.09
3484 7322 8.437360 TGTAGGAGTAAATCATGCATTGTTAG 57.563 34.615 0.00 0.00 28.95 2.34
3485 7323 8.800370 TTGTAGGAGTAAATCATGCATTGTTA 57.200 30.769 0.00 0.00 34.25 2.41
3486 7324 7.701539 TTGTAGGAGTAAATCATGCATTGTT 57.298 32.000 0.00 0.00 34.25 2.83
3487 7325 7.701539 TTTGTAGGAGTAAATCATGCATTGT 57.298 32.000 0.00 0.00 34.25 2.71
3488 7326 9.590451 AATTTTGTAGGAGTAAATCATGCATTG 57.410 29.630 0.00 0.00 34.25 2.82
3514 7352 8.780249 GCAACCTAAGAGTGTATTTGAGTTAAA 58.220 33.333 0.00 0.00 0.00 1.52
3515 7353 8.154856 AGCAACCTAAGAGTGTATTTGAGTTAA 58.845 33.333 0.00 0.00 0.00 2.01
3516 7354 7.676947 AGCAACCTAAGAGTGTATTTGAGTTA 58.323 34.615 0.00 0.00 0.00 2.24
3517 7355 6.534634 AGCAACCTAAGAGTGTATTTGAGTT 58.465 36.000 0.00 0.00 0.00 3.01
3518 7356 6.115448 AGCAACCTAAGAGTGTATTTGAGT 57.885 37.500 0.00 0.00 0.00 3.41
3519 7357 5.582665 GGAGCAACCTAAGAGTGTATTTGAG 59.417 44.000 0.00 0.00 35.41 3.02
3520 7358 5.488341 GGAGCAACCTAAGAGTGTATTTGA 58.512 41.667 0.00 0.00 35.41 2.69
3521 7359 4.330074 CGGAGCAACCTAAGAGTGTATTTG 59.670 45.833 0.00 0.00 36.31 2.32
3522 7360 4.020485 ACGGAGCAACCTAAGAGTGTATTT 60.020 41.667 0.00 0.00 36.31 1.40
3523 7361 3.514309 ACGGAGCAACCTAAGAGTGTATT 59.486 43.478 0.00 0.00 36.31 1.89
3524 7362 3.097614 ACGGAGCAACCTAAGAGTGTAT 58.902 45.455 0.00 0.00 36.31 2.29
3525 7363 2.522185 ACGGAGCAACCTAAGAGTGTA 58.478 47.619 0.00 0.00 36.31 2.90
3526 7364 1.339097 ACGGAGCAACCTAAGAGTGT 58.661 50.000 0.00 0.00 36.31 3.55
3527 7365 2.457366 AACGGAGCAACCTAAGAGTG 57.543 50.000 0.00 0.00 36.31 3.51
3528 7366 3.577415 AGTTAACGGAGCAACCTAAGAGT 59.423 43.478 0.00 0.00 36.31 3.24
3529 7367 4.174762 GAGTTAACGGAGCAACCTAAGAG 58.825 47.826 0.00 0.00 36.31 2.85
3530 7368 3.056322 GGAGTTAACGGAGCAACCTAAGA 60.056 47.826 0.00 0.00 36.31 2.10
3531 7369 3.056035 AGGAGTTAACGGAGCAACCTAAG 60.056 47.826 0.00 0.00 36.31 2.18
3532 7370 2.901839 AGGAGTTAACGGAGCAACCTAA 59.098 45.455 0.00 0.00 36.31 2.69
3533 7371 2.232941 CAGGAGTTAACGGAGCAACCTA 59.767 50.000 0.00 0.00 36.31 3.08
3534 7372 1.002087 CAGGAGTTAACGGAGCAACCT 59.998 52.381 0.00 0.00 36.31 3.50
3535 7373 1.270678 ACAGGAGTTAACGGAGCAACC 60.271 52.381 0.00 0.00 0.00 3.77
3536 7374 2.165319 ACAGGAGTTAACGGAGCAAC 57.835 50.000 0.00 0.00 0.00 4.17
3537 7375 3.555586 GGTTACAGGAGTTAACGGAGCAA 60.556 47.826 0.00 0.00 0.00 3.91
3538 7376 2.028748 GGTTACAGGAGTTAACGGAGCA 60.029 50.000 0.00 0.00 0.00 4.26
3539 7377 2.233186 AGGTTACAGGAGTTAACGGAGC 59.767 50.000 0.00 0.00 0.00 4.70
3540 7378 4.492611 GAAGGTTACAGGAGTTAACGGAG 58.507 47.826 0.00 0.00 0.00 4.63
3541 7379 3.057315 CGAAGGTTACAGGAGTTAACGGA 60.057 47.826 0.00 0.00 0.00 4.69
3542 7380 3.248266 CGAAGGTTACAGGAGTTAACGG 58.752 50.000 0.00 0.00 0.00 4.44
3583 7421 9.706691 TCGATTAGACTTACACTTCAATTTCTT 57.293 29.630 0.00 0.00 0.00 2.52
3584 7422 9.141400 GTCGATTAGACTTACACTTCAATTTCT 57.859 33.333 0.00 0.00 46.13 2.52
3619 7457 8.925338 ACCTAATAAGTCGACCAAGATTATCTT 58.075 33.333 13.01 0.99 37.14 2.40
3620 7458 8.480133 ACCTAATAAGTCGACCAAGATTATCT 57.520 34.615 13.01 0.00 0.00 1.98
3621 7459 9.623350 GTACCTAATAAGTCGACCAAGATTATC 57.377 37.037 13.01 0.00 0.00 1.75
3622 7460 9.139734 TGTACCTAATAAGTCGACCAAGATTAT 57.860 33.333 13.01 6.56 0.00 1.28
3623 7461 8.523915 TGTACCTAATAAGTCGACCAAGATTA 57.476 34.615 13.01 9.83 0.00 1.75
3624 7462 7.414222 TGTACCTAATAAGTCGACCAAGATT 57.586 36.000 13.01 9.20 0.00 2.40
3625 7463 7.598759 ATGTACCTAATAAGTCGACCAAGAT 57.401 36.000 13.01 0.00 0.00 2.40
3626 7464 8.408601 GTTATGTACCTAATAAGTCGACCAAGA 58.591 37.037 13.01 0.00 0.00 3.02
3627 7465 8.192774 TGTTATGTACCTAATAAGTCGACCAAG 58.807 37.037 13.01 2.72 0.00 3.61
3628 7466 8.065473 TGTTATGTACCTAATAAGTCGACCAA 57.935 34.615 13.01 0.04 0.00 3.67
3629 7467 7.643569 TGTTATGTACCTAATAAGTCGACCA 57.356 36.000 13.01 0.02 0.00 4.02
3630 7468 7.597743 CCATGTTATGTACCTAATAAGTCGACC 59.402 40.741 13.01 0.00 0.00 4.79
3631 7469 8.355169 TCCATGTTATGTACCTAATAAGTCGAC 58.645 37.037 7.70 7.70 0.00 4.20
3632 7470 8.467963 TCCATGTTATGTACCTAATAAGTCGA 57.532 34.615 0.00 0.00 0.00 4.20
3633 7471 8.975439 GTTCCATGTTATGTACCTAATAAGTCG 58.025 37.037 0.00 0.00 0.00 4.18
3634 7472 9.269453 GGTTCCATGTTATGTACCTAATAAGTC 57.731 37.037 0.00 0.00 33.05 3.01
3635 7473 8.774183 TGGTTCCATGTTATGTACCTAATAAGT 58.226 33.333 9.99 0.00 35.37 2.24
3636 7474 9.793259 ATGGTTCCATGTTATGTACCTAATAAG 57.207 33.333 3.31 0.00 35.37 1.73
3641 7479 9.567776 CAAATATGGTTCCATGTTATGTACCTA 57.432 33.333 13.86 0.00 35.37 3.08
3642 7480 8.058847 ACAAATATGGTTCCATGTTATGTACCT 58.941 33.333 13.86 0.00 35.37 3.08
3643 7481 8.232913 ACAAATATGGTTCCATGTTATGTACC 57.767 34.615 13.86 0.00 35.09 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.