Multiple sequence alignment - TraesCS3A01G028400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G028400 chr3A 100.000 4730 0 0 1 4730 15093789 15089060 0.000000e+00 8735.0
1 TraesCS3A01G028400 chr3A 82.710 775 134 0 11 785 562238379 562239153 0.000000e+00 689.0
2 TraesCS3A01G028400 chr3A 89.368 348 32 4 1164 1509 62112234 62112578 2.610000e-117 433.0
3 TraesCS3A01G028400 chr3D 91.361 1227 89 4 2651 3867 6011001 6012220 0.000000e+00 1663.0
4 TraesCS3A01G028400 chr3D 90.120 830 49 17 1832 2656 6010120 6010921 0.000000e+00 1048.0
5 TraesCS3A01G028400 chr3D 86.443 922 73 25 805 1705 6009089 6009979 0.000000e+00 963.0
6 TraesCS3A01G028400 chr3D 87.261 785 49 18 3996 4730 6012462 6013245 0.000000e+00 848.0
7 TraesCS3A01G028400 chr3D 82.497 777 132 3 11 785 46611950 46612724 0.000000e+00 678.0
8 TraesCS3A01G028400 chr3D 89.362 47 5 0 1733 1779 26227870 26227916 5.110000e-05 60.2
9 TraesCS3A01G028400 chr3B 92.451 1126 64 9 2673 3792 7612918 7611808 0.000000e+00 1589.0
10 TraesCS3A01G028400 chr3B 88.699 876 61 15 857 1708 7614958 7614097 0.000000e+00 1035.0
11 TraesCS3A01G028400 chr3B 89.229 817 56 13 1832 2648 7613979 7613195 0.000000e+00 992.0
12 TraesCS3A01G028400 chr3B 85.021 968 70 31 3830 4730 7611810 7610851 0.000000e+00 915.0
13 TraesCS3A01G028400 chr3B 86.689 601 69 4 3300 3895 458274500 458275094 0.000000e+00 656.0
14 TraesCS3A01G028400 chr3B 90.141 284 28 0 1226 1509 64957034 64956751 2.080000e-98 370.0
15 TraesCS3A01G028400 chr3B 85.490 255 29 3 3042 3296 458263993 458264239 4.700000e-65 259.0
16 TraesCS3A01G028400 chr3B 95.652 92 4 0 1756 1847 7614102 7614011 1.060000e-31 148.0
17 TraesCS3A01G028400 chr1A 87.007 862 94 6 3045 3899 514893469 514892619 0.000000e+00 955.0
18 TraesCS3A01G028400 chr1A 87.007 862 94 6 3045 3899 515149734 515148884 0.000000e+00 955.0
19 TraesCS3A01G028400 chr1A 82.368 777 132 4 11 785 53666028 53665255 0.000000e+00 671.0
20 TraesCS3A01G028400 chr1A 87.059 85 6 2 1686 1765 80819509 80819425 1.810000e-14 91.6
21 TraesCS3A01G028400 chr1A 100.000 30 0 0 1753 1782 441928618 441928647 6.610000e-04 56.5
22 TraesCS3A01G028400 chr5D 86.395 860 102 5 3045 3899 171684548 171683699 0.000000e+00 926.0
23 TraesCS3A01G028400 chr5D 82.581 775 133 1 11 785 380172650 380171878 0.000000e+00 682.0
24 TraesCS3A01G028400 chr5D 86.316 95 9 1 1686 1776 327056065 327055971 3.010000e-17 100.0
25 TraesCS3A01G028400 chr6D 86.028 866 102 9 3042 3899 300219160 300220014 0.000000e+00 911.0
26 TraesCS3A01G028400 chr2A 84.535 860 111 10 3045 3899 720971763 720970921 0.000000e+00 832.0
27 TraesCS3A01G028400 chr2A 82.239 777 134 3 11 785 516134147 516133373 0.000000e+00 667.0
28 TraesCS3A01G028400 chr2A 83.665 502 53 14 1164 1657 707860053 707860533 3.360000e-121 446.0
29 TraesCS3A01G028400 chr2A 91.698 265 22 0 1164 1428 746058240 746058504 7.480000e-98 368.0
30 TraesCS3A01G028400 chr2A 87.059 85 6 2 1686 1765 179427060 179427144 1.810000e-14 91.6
31 TraesCS3A01G028400 chr7A 85.833 720 87 6 3186 3899 151764586 151765296 0.000000e+00 750.0
32 TraesCS3A01G028400 chr7A 92.711 343 25 0 1167 1509 23511985 23511643 3.290000e-136 496.0
33 TraesCS3A01G028400 chr7A 91.254 343 30 0 1167 1509 89465798 89465456 7.170000e-128 468.0
34 TraesCS3A01G028400 chr6A 83.572 767 119 6 22 784 127578079 127577316 0.000000e+00 712.0
35 TraesCS3A01G028400 chr7D 83.113 758 122 5 30 785 169816781 169816028 0.000000e+00 686.0
36 TraesCS3A01G028400 chr6B 82.625 777 131 3 11 785 636388419 636387645 0.000000e+00 684.0
37 TraesCS3A01G028400 chr7B 82.368 777 133 3 11 785 107566782 107567556 0.000000e+00 673.0
38 TraesCS3A01G028400 chr7B 89.296 355 38 0 1167 1521 636774803 636774449 3.360000e-121 446.0
39 TraesCS3A01G028400 chr5A 91.892 259 21 0 1170 1428 102101309 102101051 3.480000e-96 363.0
40 TraesCS3A01G028400 chr5A 84.797 296 34 7 3045 3339 490151315 490151030 2.150000e-73 287.0
41 TraesCS3A01G028400 chr5A 89.000 100 7 2 1683 1778 429512902 429513001 2.310000e-23 121.0
42 TraesCS3A01G028400 chr5A 95.349 43 2 0 1686 1728 342235638 342235596 8.490000e-08 69.4
43 TraesCS3A01G028400 chr5B 83.495 206 28 5 2654 2856 355609978 355610180 2.250000e-43 187.0
44 TraesCS3A01G028400 chr5B 89.691 97 6 1 1686 1778 379815692 379815596 2.310000e-23 121.0
45 TraesCS3A01G028400 chr5B 93.617 47 2 1 1687 1732 291791097 291791143 8.490000e-08 69.4
46 TraesCS3A01G028400 chr2D 84.158 202 23 5 2651 2849 378094026 378094221 2.250000e-43 187.0
47 TraesCS3A01G028400 chr2D 90.845 142 9 3 2106 2245 437375867 437375728 2.250000e-43 187.0
48 TraesCS3A01G028400 chr2D 87.629 97 8 2 1686 1778 564920755 564920659 5.000000e-20 110.0
49 TraesCS3A01G028400 chr2D 88.235 51 2 3 1685 1735 14244505 14244459 1.840000e-04 58.4
50 TraesCS3A01G028400 chr4D 83.092 207 30 4 2651 2856 431198309 431198511 2.910000e-42 183.0
51 TraesCS3A01G028400 chr4D 80.000 100 8 7 1696 1786 119799390 119799294 3.950000e-06 63.9
52 TraesCS3A01G028400 chr1D 84.324 185 23 5 2673 2856 337775362 337775183 4.860000e-40 176.0
53 TraesCS3A01G028400 chr1D 81.250 208 35 4 2651 2856 421069407 421069202 1.050000e-36 165.0
54 TraesCS3A01G028400 chr2B 82.075 212 31 6 2651 2858 750016789 750016997 1.750000e-39 174.0
55 TraesCS3A01G028400 chr1B 82.439 205 26 9 2651 2850 323935924 323936123 2.260000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G028400 chr3A 15089060 15093789 4729 True 8735.0 8735 100.00000 1 4730 1 chr3A.!!$R1 4729
1 TraesCS3A01G028400 chr3A 562238379 562239153 774 False 689.0 689 82.71000 11 785 1 chr3A.!!$F2 774
2 TraesCS3A01G028400 chr3D 6009089 6013245 4156 False 1130.5 1663 88.79625 805 4730 4 chr3D.!!$F3 3925
3 TraesCS3A01G028400 chr3D 46611950 46612724 774 False 678.0 678 82.49700 11 785 1 chr3D.!!$F2 774
4 TraesCS3A01G028400 chr3B 7610851 7614958 4107 True 935.8 1589 90.21040 857 4730 5 chr3B.!!$R2 3873
5 TraesCS3A01G028400 chr3B 458274500 458275094 594 False 656.0 656 86.68900 3300 3895 1 chr3B.!!$F2 595
6 TraesCS3A01G028400 chr1A 514892619 514893469 850 True 955.0 955 87.00700 3045 3899 1 chr1A.!!$R3 854
7 TraesCS3A01G028400 chr1A 515148884 515149734 850 True 955.0 955 87.00700 3045 3899 1 chr1A.!!$R4 854
8 TraesCS3A01G028400 chr1A 53665255 53666028 773 True 671.0 671 82.36800 11 785 1 chr1A.!!$R1 774
9 TraesCS3A01G028400 chr5D 171683699 171684548 849 True 926.0 926 86.39500 3045 3899 1 chr5D.!!$R1 854
10 TraesCS3A01G028400 chr5D 380171878 380172650 772 True 682.0 682 82.58100 11 785 1 chr5D.!!$R3 774
11 TraesCS3A01G028400 chr6D 300219160 300220014 854 False 911.0 911 86.02800 3042 3899 1 chr6D.!!$F1 857
12 TraesCS3A01G028400 chr2A 720970921 720971763 842 True 832.0 832 84.53500 3045 3899 1 chr2A.!!$R2 854
13 TraesCS3A01G028400 chr2A 516133373 516134147 774 True 667.0 667 82.23900 11 785 1 chr2A.!!$R1 774
14 TraesCS3A01G028400 chr7A 151764586 151765296 710 False 750.0 750 85.83300 3186 3899 1 chr7A.!!$F1 713
15 TraesCS3A01G028400 chr6A 127577316 127578079 763 True 712.0 712 83.57200 22 784 1 chr6A.!!$R1 762
16 TraesCS3A01G028400 chr7D 169816028 169816781 753 True 686.0 686 83.11300 30 785 1 chr7D.!!$R1 755
17 TraesCS3A01G028400 chr6B 636387645 636388419 774 True 684.0 684 82.62500 11 785 1 chr6B.!!$R1 774
18 TraesCS3A01G028400 chr7B 107566782 107567556 774 False 673.0 673 82.36800 11 785 1 chr7B.!!$F1 774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.035725 TACTCGAGCGTTGAGGGAGA 60.036 55.0 13.61 0.00 37.79 3.71 F
208 209 0.037303 TCCTCTGCCCTTCTTTGCTG 59.963 55.0 0.00 0.00 0.00 4.41 F
1458 1504 0.110486 TTCTTGTTCCACAGGAGGCC 59.890 55.0 0.00 0.00 35.59 5.19 F
2330 2427 0.326264 GTCTGCCATGGAGTCCTTGT 59.674 55.0 18.40 0.93 0.00 3.16 F
2634 2736 0.610174 TGCCAAGTGAGAGCCTACTG 59.390 55.0 0.00 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 2115 0.450583 TCTACGTACCTGAAGCTGCG 59.549 55.000 0.0 0.00 0.00 5.18 R
2146 2243 1.262417 CACTACACTGTTGCTGCTGTG 59.738 52.381 0.0 13.34 41.86 3.66 R
2839 3194 0.100146 CACTACTAACTCCGTCCGGC 59.900 60.000 0.0 0.00 34.68 6.13 R
3182 3550 0.612229 TTCTTGCCAGAGAGCAGAGG 59.388 55.000 0.0 0.00 45.13 3.69 R
3931 4397 1.140852 TGGCAAGAAGCTGTGTACACT 59.859 47.619 25.6 6.37 44.79 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.400594 GGTGGTACTTGGCCTTCAGT 59.599 55.000 3.32 6.16 0.00 3.41
46 47 1.629043 ACTTGGCCTTCAGTACTCGA 58.371 50.000 3.32 0.00 0.00 4.04
50 51 1.507174 GCCTTCAGTACTCGAGCGT 59.493 57.895 13.61 0.00 0.00 5.07
59 60 0.035725 TACTCGAGCGTTGAGGGAGA 60.036 55.000 13.61 0.00 37.79 3.71
64 65 1.228894 AGCGTTGAGGGAGACTGGA 60.229 57.895 0.00 0.00 0.00 3.86
65 66 1.079750 GCGTTGAGGGAGACTGGAC 60.080 63.158 0.00 0.00 0.00 4.02
82 83 2.235402 TGGACCCGTTAAGATTCTCCAC 59.765 50.000 0.00 0.00 0.00 4.02
85 86 1.287425 CCGTTAAGATTCTCCACGCC 58.713 55.000 10.62 0.00 0.00 5.68
91 92 0.534412 AGATTCTCCACGCCTGTCTG 59.466 55.000 0.00 0.00 0.00 3.51
106 107 0.186386 GTCTGGCTAGGAGGGCTAGA 59.814 60.000 0.00 0.00 43.18 2.43
118 119 3.118075 GGAGGGCTAGATTGAAAAGCTCT 60.118 47.826 0.00 0.00 38.98 4.09
122 123 4.759183 GGGCTAGATTGAAAAGCTCTATGG 59.241 45.833 0.00 0.00 38.98 2.74
124 125 4.818546 GCTAGATTGAAAAGCTCTATGGCA 59.181 41.667 0.00 0.00 38.98 4.92
151 152 3.631250 TCCAAGCCCTCCACAATATTTC 58.369 45.455 0.00 0.00 0.00 2.17
157 158 2.105821 CCCTCCACAATATTTCGGCCTA 59.894 50.000 0.00 0.00 0.00 3.93
166 167 5.010314 ACAATATTTCGGCCTAGTCATCGTA 59.990 40.000 0.00 0.00 0.00 3.43
193 194 0.402121 AGACCCAACTTGGCTTCCTC 59.598 55.000 1.76 0.00 35.79 3.71
195 196 0.111253 ACCCAACTTGGCTTCCTCTG 59.889 55.000 1.76 0.00 35.79 3.35
208 209 0.037303 TCCTCTGCCCTTCTTTGCTG 59.963 55.000 0.00 0.00 0.00 4.41
225 226 1.881925 GCTGCCCCACCAAAATTTTCC 60.882 52.381 0.00 0.00 0.00 3.13
232 233 4.323409 CCCCACCAAAATTTTCCGATCAAT 60.323 41.667 0.00 0.00 0.00 2.57
259 260 0.676466 TGTGCTCATAAAGGCCACGG 60.676 55.000 5.01 0.00 0.00 4.94
262 263 1.912220 CTCATAAAGGCCACGGGGA 59.088 57.895 8.67 0.00 35.59 4.81
272 273 0.822121 GCCACGGGGAAGTTTGAAGT 60.822 55.000 8.67 0.00 35.59 3.01
274 275 2.853705 CCACGGGGAAGTTTGAAGTAA 58.146 47.619 0.00 0.00 35.59 2.24
283 284 5.768164 GGGAAGTTTGAAGTAAGACATGGAA 59.232 40.000 0.00 0.00 0.00 3.53
286 287 9.178758 GGAAGTTTGAAGTAAGACATGGAATAT 57.821 33.333 0.00 0.00 0.00 1.28
287 288 9.994432 GAAGTTTGAAGTAAGACATGGAATATG 57.006 33.333 0.00 0.00 0.00 1.78
291 292 6.653020 TGAAGTAAGACATGGAATATGCAGT 58.347 36.000 0.00 0.00 0.00 4.40
331 332 8.424133 ACAGATTTAATCAAAACTTCTTTGCCT 58.576 29.630 7.74 0.00 0.00 4.75
341 342 3.121030 CTTTGCCTCCCGCTGACG 61.121 66.667 0.00 0.00 38.78 4.35
364 365 0.250770 GCTTCTCCGTCCACCCTTTT 60.251 55.000 0.00 0.00 0.00 2.27
391 392 6.542370 CCTTGTTCCAGACTCTGTCTTTTAAA 59.458 38.462 5.32 0.00 41.37 1.52
477 478 9.929722 TGTAAGCGATTCATTTGTAATATTCAC 57.070 29.630 0.00 0.00 0.00 3.18
494 495 3.953712 TCACTGCATTCTTTACCTCGA 57.046 42.857 0.00 0.00 0.00 4.04
505 506 7.148407 GCATTCTTTACCTCGATTTTGAGAGAA 60.148 37.037 0.00 0.00 38.28 2.87
507 508 6.994221 TCTTTACCTCGATTTTGAGAGAAGT 58.006 36.000 0.00 0.00 38.28 3.01
508 509 7.442656 TCTTTACCTCGATTTTGAGAGAAGTT 58.557 34.615 0.00 0.00 38.28 2.66
526 527 0.480690 TTGGGCAGCCCTTACTGAAA 59.519 50.000 31.51 12.60 45.70 2.69
553 554 8.575649 ACACCGAGGATTTTGATAAGTTTATT 57.424 30.769 0.00 0.00 0.00 1.40
608 609 4.889409 TCAAGGAAGACAACTCATTTGCTT 59.111 37.500 0.00 0.00 39.01 3.91
610 611 3.499918 AGGAAGACAACTCATTTGCTTCG 59.500 43.478 0.00 0.00 42.84 3.79
625 627 3.472652 TGCTTCGAAAGAACTGGCTTTA 58.527 40.909 0.00 0.00 46.92 1.85
673 675 1.953559 GCAAGTGGCTTATCGATGGA 58.046 50.000 8.54 0.00 40.25 3.41
693 695 1.798735 CCGACGGAGCTACTCGAAA 59.201 57.895 8.64 0.00 0.00 3.46
705 707 2.751166 ACTCGAAATCCACTGAGGTG 57.249 50.000 0.00 0.00 42.65 4.00
706 708 2.248248 ACTCGAAATCCACTGAGGTGA 58.752 47.619 0.00 0.00 45.61 4.02
708 710 1.550524 TCGAAATCCACTGAGGTGAGG 59.449 52.381 0.00 0.00 45.61 3.86
740 742 4.048241 TGGGTTTTTAAAAGGCACGAAG 57.952 40.909 0.14 0.00 0.00 3.79
752 754 2.038975 ACGAAGGGCCCTCTGCTA 59.961 61.111 28.84 0.00 40.92 3.49
754 756 2.060980 CGAAGGGCCCTCTGCTACT 61.061 63.158 28.84 7.33 40.92 2.57
785 787 4.202441 CAGGTATGGAGAAATTGGGTCTG 58.798 47.826 0.00 0.00 0.00 3.51
786 788 4.080356 CAGGTATGGAGAAATTGGGTCTGA 60.080 45.833 0.00 0.00 0.00 3.27
787 789 4.540099 AGGTATGGAGAAATTGGGTCTGAA 59.460 41.667 0.00 0.00 0.00 3.02
788 790 5.194537 AGGTATGGAGAAATTGGGTCTGAAT 59.805 40.000 0.00 0.00 0.00 2.57
789 791 5.893824 GGTATGGAGAAATTGGGTCTGAATT 59.106 40.000 0.00 0.00 0.00 2.17
790 792 6.039829 GGTATGGAGAAATTGGGTCTGAATTC 59.960 42.308 0.00 0.00 0.00 2.17
791 793 4.344104 TGGAGAAATTGGGTCTGAATTCC 58.656 43.478 2.27 0.00 0.00 3.01
792 794 4.044571 TGGAGAAATTGGGTCTGAATTCCT 59.955 41.667 2.27 0.00 0.00 3.36
793 795 4.642437 GGAGAAATTGGGTCTGAATTCCTC 59.358 45.833 2.27 0.00 0.00 3.71
794 796 5.256474 GAGAAATTGGGTCTGAATTCCTCA 58.744 41.667 2.27 0.00 27.75 3.86
795 797 5.644188 AGAAATTGGGTCTGAATTCCTCAA 58.356 37.500 2.27 0.35 32.17 3.02
796 798 5.713861 AGAAATTGGGTCTGAATTCCTCAAG 59.286 40.000 2.27 0.00 32.17 3.02
797 799 4.664688 ATTGGGTCTGAATTCCTCAAGT 57.335 40.909 2.27 0.00 32.17 3.16
798 800 4.453480 TTGGGTCTGAATTCCTCAAGTT 57.547 40.909 2.27 0.00 32.17 2.66
799 801 5.576563 TTGGGTCTGAATTCCTCAAGTTA 57.423 39.130 2.27 0.00 32.17 2.24
800 802 5.165961 TGGGTCTGAATTCCTCAAGTTAG 57.834 43.478 2.27 0.00 32.17 2.34
801 803 4.597507 TGGGTCTGAATTCCTCAAGTTAGT 59.402 41.667 2.27 0.00 32.17 2.24
802 804 4.938226 GGGTCTGAATTCCTCAAGTTAGTG 59.062 45.833 2.27 0.00 32.17 2.74
803 805 5.280011 GGGTCTGAATTCCTCAAGTTAGTGA 60.280 44.000 2.27 0.00 32.17 3.41
804 806 5.872070 GGTCTGAATTCCTCAAGTTAGTGAG 59.128 44.000 2.27 0.00 43.98 3.51
805 807 6.295349 GGTCTGAATTCCTCAAGTTAGTGAGA 60.295 42.308 2.27 0.00 46.76 3.27
806 808 7.327214 GTCTGAATTCCTCAAGTTAGTGAGAT 58.673 38.462 2.27 0.00 46.76 2.75
807 809 7.491048 GTCTGAATTCCTCAAGTTAGTGAGATC 59.509 40.741 2.27 0.00 46.76 2.75
842 844 9.890352 TTTTTCAGGAAACTTGTTTCATTTTTG 57.110 25.926 22.51 13.93 40.21 2.44
859 861 9.874205 TTCATTTTTGTTCAGATTGAGAAACTT 57.126 25.926 0.00 0.00 0.00 2.66
874 876 5.652891 TGAGAAACTTAGAGCGGAACTAGAT 59.347 40.000 0.00 0.00 0.00 1.98
947 965 4.074526 GAGGAGCAGCACGAGCCA 62.075 66.667 0.00 0.00 43.56 4.75
1117 1148 0.836400 ATCCCATCCCGCCGACTTAT 60.836 55.000 0.00 0.00 0.00 1.73
1127 1158 2.745281 CCGCCGACTTATTTTCCTTCAA 59.255 45.455 0.00 0.00 0.00 2.69
1146 1177 0.836400 ACACTGATCCCCCGTCACTT 60.836 55.000 0.00 0.00 0.00 3.16
1245 1276 4.379302 AGCAGGTTGGAAATCTTTCTCT 57.621 40.909 2.93 0.00 32.67 3.10
1337 1368 3.830178 TGAATTGACTCGGTCCTCTGTAA 59.170 43.478 2.23 0.00 0.00 2.41
1356 1387 8.231692 TCTGTAATTTCATTCAGTTTGGACAA 57.768 30.769 0.00 0.00 0.00 3.18
1357 1388 8.859090 TCTGTAATTTCATTCAGTTTGGACAAT 58.141 29.630 0.00 0.00 0.00 2.71
1358 1389 9.480053 CTGTAATTTCATTCAGTTTGGACAATT 57.520 29.630 0.00 0.00 0.00 2.32
1359 1390 9.474920 TGTAATTTCATTCAGTTTGGACAATTC 57.525 29.630 0.00 0.00 0.00 2.17
1360 1391 9.696917 GTAATTTCATTCAGTTTGGACAATTCT 57.303 29.630 0.00 0.00 0.00 2.40
1367 1398 8.492748 CATTCAGTTTGGACAATTCTTGAAATG 58.507 33.333 0.00 0.00 0.00 2.32
1369 1400 6.979817 TCAGTTTGGACAATTCTTGAAATGTG 59.020 34.615 8.57 0.91 0.00 3.21
1371 1402 6.980397 AGTTTGGACAATTCTTGAAATGTGAC 59.020 34.615 8.57 3.31 0.00 3.67
1372 1403 5.452078 TGGACAATTCTTGAAATGTGACC 57.548 39.130 8.57 5.80 0.00 4.02
1382 1413 3.750371 TGAAATGTGACCGACTTGGATT 58.250 40.909 0.00 0.00 42.00 3.01
1384 1415 2.113860 ATGTGACCGACTTGGATTGG 57.886 50.000 0.00 0.00 42.00 3.16
1386 1417 1.628340 TGTGACCGACTTGGATTGGAT 59.372 47.619 0.00 0.00 42.00 3.41
1387 1418 2.009774 GTGACCGACTTGGATTGGATG 58.990 52.381 0.00 0.00 42.00 3.51
1388 1419 1.065491 TGACCGACTTGGATTGGATGG 60.065 52.381 0.00 0.00 42.00 3.51
1404 1450 5.018539 TGGATGGTAGATGGTTTAGTTCG 57.981 43.478 0.00 0.00 0.00 3.95
1424 1470 0.116342 TGTGGAGCCTCCCTCTTACA 59.884 55.000 8.62 2.23 40.57 2.41
1449 1495 2.093394 TCCGTGTGTTCTTCTTGTTCCA 60.093 45.455 0.00 0.00 0.00 3.53
1458 1504 0.110486 TTCTTGTTCCACAGGAGGCC 59.890 55.000 0.00 0.00 35.59 5.19
1520 1566 4.440250 CGAGATGGGGATCGGTATATGTTC 60.440 50.000 0.00 0.00 0.00 3.18
1535 1581 7.870954 CGGTATATGTTCCTAACTGCATTCTTA 59.129 37.037 0.00 0.00 0.00 2.10
1544 1590 3.641434 ACTGCATTCTTAGCTCCATGT 57.359 42.857 0.00 0.00 0.00 3.21
1554 1600 1.831580 AGCTCCATGTCTTTTCTGGC 58.168 50.000 0.00 0.00 0.00 4.85
1586 1632 1.736126 CAGCGATTCTTGTGCAGATGT 59.264 47.619 0.00 0.00 0.00 3.06
1648 1695 2.835764 AGTGATGCCCAAATGCAGAATT 59.164 40.909 0.00 0.00 45.93 2.17
1658 1705 6.405731 GCCCAAATGCAGAATTTAGTCATGTA 60.406 38.462 0.00 0.00 36.28 2.29
1659 1706 7.198390 CCCAAATGCAGAATTTAGTCATGTAG 58.802 38.462 0.00 0.00 36.28 2.74
1660 1707 7.067372 CCCAAATGCAGAATTTAGTCATGTAGA 59.933 37.037 0.00 0.00 36.28 2.59
1661 1708 8.461222 CCAAATGCAGAATTTAGTCATGTAGAA 58.539 33.333 0.00 0.00 36.28 2.10
1662 1709 9.844790 CAAATGCAGAATTTAGTCATGTAGAAA 57.155 29.630 0.00 0.00 36.28 2.52
1663 1710 9.846248 AAATGCAGAATTTAGTCATGTAGAAAC 57.154 29.630 0.00 0.00 36.69 2.78
1664 1711 8.798859 ATGCAGAATTTAGTCATGTAGAAACT 57.201 30.769 0.00 0.00 0.00 2.66
1692 1739 2.373540 TTCAACGATTGGTACTCCCG 57.626 50.000 0.00 0.00 35.15 5.14
1708 1755 3.263425 ACTCCCGCCGATCCATATTAATT 59.737 43.478 0.00 0.00 0.00 1.40
1709 1756 3.605634 TCCCGCCGATCCATATTAATTG 58.394 45.455 0.00 0.00 0.00 2.32
1710 1757 3.008594 TCCCGCCGATCCATATTAATTGT 59.991 43.478 0.00 0.00 0.00 2.71
1711 1758 3.374058 CCCGCCGATCCATATTAATTGTC 59.626 47.826 0.00 0.00 0.00 3.18
1712 1759 3.062099 CCGCCGATCCATATTAATTGTCG 59.938 47.826 0.00 0.00 0.00 4.35
1713 1760 3.483574 CGCCGATCCATATTAATTGTCGC 60.484 47.826 0.00 0.00 0.00 5.19
1714 1761 3.684788 GCCGATCCATATTAATTGTCGCT 59.315 43.478 0.00 0.00 0.00 4.93
1715 1762 4.201724 GCCGATCCATATTAATTGTCGCTC 60.202 45.833 0.00 0.00 0.00 5.03
1716 1763 4.929211 CCGATCCATATTAATTGTCGCTCA 59.071 41.667 0.00 0.00 0.00 4.26
1717 1764 5.163953 CCGATCCATATTAATTGTCGCTCAC 60.164 44.000 0.00 0.00 0.00 3.51
1718 1765 5.635280 CGATCCATATTAATTGTCGCTCACT 59.365 40.000 0.00 0.00 0.00 3.41
1719 1766 6.146184 CGATCCATATTAATTGTCGCTCACTT 59.854 38.462 0.00 0.00 0.00 3.16
1720 1767 7.328493 CGATCCATATTAATTGTCGCTCACTTA 59.672 37.037 0.00 0.00 0.00 2.24
1721 1768 7.946655 TCCATATTAATTGTCGCTCACTTAG 57.053 36.000 0.00 0.00 0.00 2.18
1722 1769 7.497595 TCCATATTAATTGTCGCTCACTTAGT 58.502 34.615 0.00 0.00 0.00 2.24
1723 1770 8.635328 TCCATATTAATTGTCGCTCACTTAGTA 58.365 33.333 0.00 0.00 0.00 1.82
1724 1771 8.700644 CCATATTAATTGTCGCTCACTTAGTAC 58.299 37.037 0.00 0.00 0.00 2.73
1725 1772 9.244799 CATATTAATTGTCGCTCACTTAGTACA 57.755 33.333 0.00 0.00 0.00 2.90
1726 1773 9.811995 ATATTAATTGTCGCTCACTTAGTACAA 57.188 29.630 0.00 0.93 37.51 2.41
1727 1774 5.840940 AATTGTCGCTCACTTAGTACAAC 57.159 39.130 0.48 0.00 36.60 3.32
1728 1775 4.579454 TTGTCGCTCACTTAGTACAACT 57.421 40.909 0.00 0.00 31.99 3.16
1729 1776 4.579454 TGTCGCTCACTTAGTACAACTT 57.421 40.909 0.00 0.00 0.00 2.66
1730 1777 4.940463 TGTCGCTCACTTAGTACAACTTT 58.060 39.130 0.00 0.00 0.00 2.66
1731 1778 4.743151 TGTCGCTCACTTAGTACAACTTTG 59.257 41.667 0.00 0.00 0.00 2.77
1732 1779 4.743644 GTCGCTCACTTAGTACAACTTTGT 59.256 41.667 0.00 0.00 44.86 2.83
1733 1780 5.916883 GTCGCTCACTTAGTACAACTTTGTA 59.083 40.000 0.00 0.00 42.35 2.41
1750 1797 7.357429 ACTTTGTACCTTGTACTAAGTGAGT 57.643 36.000 23.56 8.42 40.22 3.41
1760 1807 9.436957 CCTTGTACTAAGTGAGTGACAATTAAT 57.563 33.333 0.00 0.00 38.32 1.40
1788 1835 3.709653 TCGGAGGGAGTAGCATATTTGTT 59.290 43.478 0.00 0.00 0.00 2.83
1860 1956 5.428253 GTCCATACTTCCTGTCAAATGCTA 58.572 41.667 0.00 0.00 0.00 3.49
1922 2018 3.089284 GTTTAGCCAATAGCCCACTGTT 58.911 45.455 0.00 0.00 45.47 3.16
2034 2130 0.944311 ACAACGCAGCTTCAGGTACG 60.944 55.000 0.00 0.00 38.18 3.67
2044 2140 5.035443 CAGCTTCAGGTACGTAGAATACAC 58.965 45.833 0.00 0.00 43.24 2.90
2054 2150 3.243301 ACGTAGAATACACGATGCCGATT 60.243 43.478 1.43 0.00 43.24 3.34
2066 2162 6.253298 ACACGATGCCGATTGAAAAATATTTG 59.747 34.615 0.39 0.00 39.50 2.32
2146 2243 5.187186 TGGTCTGGTAGAAAACTATGAGTCC 59.813 44.000 0.00 0.00 0.00 3.85
2235 2332 1.336440 CCAACGCAAAGACATCACCAA 59.664 47.619 0.00 0.00 0.00 3.67
2251 2348 7.202526 ACATCACCAAATGTTTGTAGTTTCTG 58.797 34.615 4.92 0.00 36.47 3.02
2257 2354 6.756074 CCAAATGTTTGTAGTTTCTGCTTCAA 59.244 34.615 4.92 0.00 36.45 2.69
2267 2364 2.708216 TCTGCTTCAACTGTGTCCAA 57.292 45.000 0.00 0.00 0.00 3.53
2268 2365 2.997980 TCTGCTTCAACTGTGTCCAAA 58.002 42.857 0.00 0.00 0.00 3.28
2277 2374 3.861276 ACTGTGTCCAAATGCATCATG 57.139 42.857 0.00 2.24 0.00 3.07
2291 2388 5.239359 TGCATCATGTTGTAATCTTCAGC 57.761 39.130 5.69 0.00 0.00 4.26
2308 2405 2.159531 TCAGCGCTTTGGAATCAATTCG 60.160 45.455 7.50 0.00 37.67 3.34
2330 2427 0.326264 GTCTGCCATGGAGTCCTTGT 59.674 55.000 18.40 0.93 0.00 3.16
2358 2455 7.636359 GCGTCAAGTCTATAAAATGCTTTGTAG 59.364 37.037 0.00 0.00 37.50 2.74
2406 2506 8.722480 TCTACTTATCACTTGTACGCTAAGTA 57.278 34.615 0.00 0.00 36.29 2.24
2454 2554 6.070951 AGAAGGGTTCTGAATGAATCATGA 57.929 37.500 0.00 0.00 38.91 3.07
2500 2602 7.530010 ACAGTAATGTTTCATGCATGACTTAC 58.470 34.615 28.72 26.50 36.24 2.34
2631 2733 1.055849 TGTTGCCAAGTGAGAGCCTA 58.944 50.000 0.00 0.00 0.00 3.93
2632 2734 1.270839 TGTTGCCAAGTGAGAGCCTAC 60.271 52.381 0.00 0.00 0.00 3.18
2634 2736 0.610174 TGCCAAGTGAGAGCCTACTG 59.390 55.000 0.00 0.00 0.00 2.74
2635 2737 0.898320 GCCAAGTGAGAGCCTACTGA 59.102 55.000 0.00 0.00 0.00 3.41
2670 2857 9.927668 CTTGTATATTTTGGGTCAAACTTTGAT 57.072 29.630 7.47 0.00 42.47 2.57
2839 3194 6.267699 CCAAAATAAGAGGGGGCCTAATAAAG 59.732 42.308 0.84 0.00 31.76 1.85
2880 3235 2.236395 GGCTAAGAGACCTGCCAGTAAA 59.764 50.000 0.00 0.00 44.34 2.01
2881 3236 3.263261 GCTAAGAGACCTGCCAGTAAAC 58.737 50.000 0.00 0.00 0.00 2.01
2922 3277 9.077885 TCACTATTTTGGATTTAGCAGTTTTCT 57.922 29.630 0.00 0.00 0.00 2.52
2959 3314 8.499288 TGTATGTTACACCCCATAGATTCATA 57.501 34.615 0.00 0.00 32.89 2.15
2995 3350 5.659463 TGTTGCATGGCCTTTACATAATTC 58.341 37.500 3.32 0.00 0.00 2.17
3061 3424 6.237901 AGTGCAAGTTTGAATATAGTCCACA 58.762 36.000 0.00 0.00 0.00 4.17
3128 3496 8.394121 CAAGGAAAAGAGCTGTATCAGTTAATC 58.606 37.037 0.00 0.00 33.43 1.75
3130 3498 6.823689 GGAAAAGAGCTGTATCAGTTAATCCA 59.176 38.462 0.00 0.00 33.43 3.41
3136 3504 4.684485 GCTGTATCAGTTAATCCACCAGCT 60.684 45.833 0.00 0.00 39.62 4.24
3144 3512 6.537301 TCAGTTAATCCACCAGCTATAAAACG 59.463 38.462 0.00 0.00 0.00 3.60
3179 3547 8.823220 AAATGAATATAAAGCCACAGTTACCT 57.177 30.769 0.00 0.00 0.00 3.08
3180 3548 7.807977 ATGAATATAAAGCCACAGTTACCTG 57.192 36.000 0.00 0.00 44.68 4.00
3181 3549 5.588648 TGAATATAAAGCCACAGTTACCTGC 59.411 40.000 0.00 0.00 42.81 4.85
3182 3550 2.194201 TAAAGCCACAGTTACCTGCC 57.806 50.000 0.00 0.00 42.81 4.85
3183 3551 0.539669 AAAGCCACAGTTACCTGCCC 60.540 55.000 0.00 0.00 42.81 5.36
3184 3552 1.427072 AAGCCACAGTTACCTGCCCT 61.427 55.000 0.00 0.00 42.81 5.19
3298 3669 7.225784 TGATAGAGAAGAGATGGCTATTGAC 57.774 40.000 0.00 0.00 0.00 3.18
3567 3939 6.834451 TCCCCTTTCAGTAAAACATACACAAA 59.166 34.615 0.00 0.00 0.00 2.83
3582 3957 8.238481 ACATACACAAACAGAGTTTTGTTTTG 57.762 30.769 12.21 6.76 46.18 2.44
3585 3960 5.694458 ACACAAACAGAGTTTTGTTTTGACC 59.306 36.000 14.56 0.00 46.18 4.02
3627 4002 3.046968 TGCATAACGCTTACCTTGACA 57.953 42.857 0.00 0.00 43.06 3.58
3634 4009 4.616181 ACGCTTACCTTGACATTATTGC 57.384 40.909 0.00 0.00 0.00 3.56
3692 4067 2.120232 CGATACCAGTGCGTCAATCTC 58.880 52.381 0.00 0.00 0.00 2.75
3743 4123 8.849168 TGTTGAGAAATAGTTCACATGTTTGAT 58.151 29.630 5.62 0.00 34.80 2.57
3815 4195 4.308526 TGGTTGTATTCTGCCCATACAA 57.691 40.909 7.88 7.88 42.32 2.41
3883 4343 5.924475 TTGCTAAGTGAAAAGACTACAGC 57.076 39.130 0.00 0.00 35.86 4.40
3916 4382 2.937469 TTATCTGCATTTTGCCACCG 57.063 45.000 0.00 0.00 44.23 4.94
3931 4397 2.993937 CCACCGGAAAGGCTACAAATA 58.006 47.619 9.46 0.00 46.52 1.40
3950 4416 1.884235 AGTGTACACAGCTTCTTGCC 58.116 50.000 27.06 0.00 44.23 4.52
3954 4420 3.125316 GTGTACACAGCTTCTTGCCATAC 59.875 47.826 21.14 0.00 44.23 2.39
3963 4429 5.355071 CAGCTTCTTGCCATACATTCACTTA 59.645 40.000 0.00 0.00 44.23 2.24
3973 4439 6.572519 CCATACATTCACTTAACCCCAAATG 58.427 40.000 0.00 0.00 0.00 2.32
3984 4450 8.037758 CACTTAACCCCAAATGCATACAATTAA 58.962 33.333 0.00 0.66 0.00 1.40
4095 4588 2.159881 CGATCGACAAAGGGACGAAAAC 60.160 50.000 10.26 0.00 39.38 2.43
4129 4623 5.860941 AGGAGACGACTGAATATTGACAT 57.139 39.130 0.00 0.00 0.00 3.06
4169 4663 5.241662 ACTAAGAGCCAACACAAGAAGATC 58.758 41.667 0.00 0.00 0.00 2.75
4174 4668 3.504906 AGCCAACACAAGAAGATCACATG 59.495 43.478 0.00 0.00 0.00 3.21
4194 4689 2.807967 TGTCAAATTGCTGACTTCTCCG 59.192 45.455 10.75 0.00 45.03 4.63
4225 4739 7.473735 TGAATTGTGCCCAAACATTTCTATA 57.526 32.000 11.17 0.00 39.48 1.31
4241 4755 9.784531 ACATTTCTATATTTGATAGGACACTGG 57.215 33.333 0.00 0.00 0.00 4.00
4242 4756 8.725148 CATTTCTATATTTGATAGGACACTGGC 58.275 37.037 0.00 0.00 0.00 4.85
4244 4758 6.997655 TCTATATTTGATAGGACACTGGCTG 58.002 40.000 0.00 0.00 0.00 4.85
4245 4759 5.894298 ATATTTGATAGGACACTGGCTGA 57.106 39.130 0.00 0.00 0.00 4.26
4278 4807 5.418524 TGAACCCATCTGACCAATTTACATG 59.581 40.000 0.00 0.00 0.00 3.21
4297 4826 1.625315 TGTAGCTTGTCCATCTGCACT 59.375 47.619 0.00 0.00 0.00 4.40
4340 4869 8.466798 TGTTCAACGAATCAACAGATAGAGATA 58.533 33.333 0.00 0.00 0.00 1.98
4424 4953 7.707104 GCAGTAAGCCATTAAGTGATTTACAT 58.293 34.615 0.00 0.00 37.23 2.29
4428 4957 9.937175 GTAAGCCATTAAGTGATTTACATTCTC 57.063 33.333 0.00 0.00 31.95 2.87
4439 4968 6.201806 GTGATTTACATTCTCTCGCATTAGCT 59.798 38.462 0.00 0.00 39.10 3.32
4483 5026 2.067013 GTCTTGCTGAGGGTACGAAAC 58.933 52.381 0.00 0.00 0.00 2.78
4534 5077 5.106118 GCCTACCCTTTGAAAGAAGATGAAC 60.106 44.000 6.49 0.00 0.00 3.18
4540 5083 4.749245 TTGAAAGAAGATGAACGCTTCC 57.251 40.909 0.00 0.00 42.04 3.46
4543 5086 0.253327 AGAAGATGAACGCTTCCCCC 59.747 55.000 0.00 0.00 42.04 5.40
4559 5102 4.376225 TCCCCCGATCAATAAATTACCC 57.624 45.455 0.00 0.00 0.00 3.69
4616 5161 6.919662 CAGACACAGTTAATCAAACAATTGCT 59.080 34.615 5.05 0.00 40.83 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.073923 CTGAAGGCCAAGTACCACCTT 59.926 52.381 5.01 6.13 45.13 3.50
20 21 0.693049 CTGAAGGCCAAGTACCACCT 59.307 55.000 5.01 0.00 0.00 4.00
28 29 1.737363 GCTCGAGTACTGAAGGCCAAG 60.737 57.143 15.13 1.33 0.00 3.61
35 36 1.199327 CCTCAACGCTCGAGTACTGAA 59.801 52.381 15.13 0.00 0.00 3.02
40 41 0.035725 TCTCCCTCAACGCTCGAGTA 60.036 55.000 15.13 0.00 0.00 2.59
46 47 1.228894 TCCAGTCTCCCTCAACGCT 60.229 57.895 0.00 0.00 0.00 5.07
50 51 1.609501 CGGGTCCAGTCTCCCTCAA 60.610 63.158 0.00 0.00 41.40 3.02
59 60 2.500504 GGAGAATCTTAACGGGTCCAGT 59.499 50.000 0.00 0.00 33.73 4.00
64 65 1.405121 GCGTGGAGAATCTTAACGGGT 60.405 52.381 16.57 0.00 37.06 5.28
65 66 1.287425 GCGTGGAGAATCTTAACGGG 58.713 55.000 16.57 0.00 37.06 5.28
85 86 0.105964 TAGCCCTCCTAGCCAGACAG 60.106 60.000 0.00 0.00 0.00 3.51
91 92 2.016905 TCAATCTAGCCCTCCTAGCC 57.983 55.000 0.00 0.00 42.73 3.93
100 101 4.215185 GCCATAGAGCTTTTCAATCTAGCC 59.785 45.833 0.00 0.00 35.53 3.93
106 107 6.534475 TTTCATGCCATAGAGCTTTTCAAT 57.466 33.333 0.00 0.00 0.00 2.57
122 123 0.749049 GGAGGGCTTGGATTTCATGC 59.251 55.000 0.00 0.00 43.38 4.06
124 125 1.358787 TGTGGAGGGCTTGGATTTCAT 59.641 47.619 0.00 0.00 0.00 2.57
151 152 0.592148 GGAGTACGATGACTAGGCCG 59.408 60.000 0.00 0.00 0.00 6.13
157 158 2.645802 GTCTCCTGGAGTACGATGACT 58.354 52.381 22.50 0.00 0.00 3.41
166 167 1.059913 CAAGTTGGGTCTCCTGGAGT 58.940 55.000 22.50 0.00 0.00 3.85
193 194 2.643232 GGGCAGCAAAGAAGGGCAG 61.643 63.158 0.00 0.00 0.00 4.85
195 196 3.385384 GGGGCAGCAAAGAAGGGC 61.385 66.667 0.00 0.00 0.00 5.19
208 209 0.682292 TCGGAAAATTTTGGTGGGGC 59.318 50.000 8.47 0.00 0.00 5.80
225 226 5.723492 TGAGCACATTAACTCATTGATCG 57.277 39.130 0.00 0.00 37.99 3.69
232 233 4.640201 GGCCTTTATGAGCACATTAACTCA 59.360 41.667 0.83 0.00 46.34 3.41
248 249 0.479378 AAACTTCCCCGTGGCCTTTA 59.521 50.000 3.32 0.00 0.00 1.85
259 260 5.313712 TCCATGTCTTACTTCAAACTTCCC 58.686 41.667 0.00 0.00 0.00 3.97
262 263 8.462016 GCATATTCCATGTCTTACTTCAAACTT 58.538 33.333 0.00 0.00 0.00 2.66
272 273 5.368145 GGTCACTGCATATTCCATGTCTTA 58.632 41.667 0.00 0.00 0.00 2.10
274 275 3.742327 CGGTCACTGCATATTCCATGTCT 60.742 47.826 0.00 0.00 0.00 3.41
283 284 0.462581 CACAGGCGGTCACTGCATAT 60.463 55.000 11.68 0.00 39.55 1.78
291 292 2.395988 ATCTGTTGCACAGGCGGTCA 62.396 55.000 13.87 0.00 45.94 4.02
304 305 9.045223 GGCAAAGAAGTTTTGATTAAATCTGTT 57.955 29.630 3.97 0.00 0.00 3.16
313 314 3.005791 CGGGAGGCAAAGAAGTTTTGATT 59.994 43.478 3.97 0.00 0.00 2.57
341 342 1.079057 GGTGGACGGAGAAGCTTCC 60.079 63.158 22.81 13.78 0.00 3.46
342 343 1.079057 GGGTGGACGGAGAAGCTTC 60.079 63.158 19.11 19.11 0.00 3.86
346 347 2.614734 GGTAAAAGGGTGGACGGAGAAG 60.615 54.545 0.00 0.00 0.00 2.85
349 350 0.981943 AGGTAAAAGGGTGGACGGAG 59.018 55.000 0.00 0.00 0.00 4.63
353 354 2.889045 GGAACAAGGTAAAAGGGTGGAC 59.111 50.000 0.00 0.00 0.00 4.02
364 365 3.845860 AGACAGAGTCTGGAACAAGGTA 58.154 45.455 23.79 0.00 41.76 3.08
391 392 9.783081 AATTGTAAGAATGGAGCTTTCAAATTT 57.217 25.926 0.00 0.00 36.62 1.82
412 413 3.290710 GCCATCTGATGTGGGTAATTGT 58.709 45.455 15.95 0.00 37.22 2.71
457 458 9.454585 AATGCAGTGAATATTACAAATGAATCG 57.545 29.630 0.00 0.00 0.00 3.34
475 476 5.551760 AAATCGAGGTAAAGAATGCAGTG 57.448 39.130 0.00 0.00 0.00 3.66
477 478 6.092670 TCTCAAAATCGAGGTAAAGAATGCAG 59.907 38.462 0.00 0.00 33.59 4.41
494 495 2.560105 GCTGCCCAACTTCTCTCAAAAT 59.440 45.455 0.00 0.00 0.00 1.82
526 527 6.894339 AACTTATCAAAATCCTCGGTGTTT 57.106 33.333 0.00 0.00 0.00 2.83
571 572 8.169977 TGTCTTCCTTGATGGATAATTATTGC 57.830 34.615 0.00 0.00 45.68 3.56
580 581 4.916041 TGAGTTGTCTTCCTTGATGGAT 57.084 40.909 0.00 0.00 45.68 3.41
600 601 2.982470 GCCAGTTCTTTCGAAGCAAATG 59.018 45.455 10.16 10.16 0.00 2.32
608 609 5.124138 TGTTTGTTAAAGCCAGTTCTTTCGA 59.876 36.000 0.00 0.00 37.46 3.71
610 611 5.232202 GCTGTTTGTTAAAGCCAGTTCTTTC 59.768 40.000 0.00 0.00 37.46 2.62
625 627 3.693085 CAGATGATAGCCTGCTGTTTGTT 59.307 43.478 0.97 0.00 0.00 2.83
664 666 1.228033 TCCGTCGGCTCCATCGATA 60.228 57.895 6.34 0.00 38.93 2.92
666 668 3.209812 CTCCGTCGGCTCCATCGA 61.210 66.667 6.34 0.00 0.00 3.59
669 671 2.123854 TAGCTCCGTCGGCTCCAT 60.124 61.111 6.34 0.00 40.74 3.41
673 675 3.203412 CGAGTAGCTCCGTCGGCT 61.203 66.667 6.34 3.60 43.02 5.52
693 695 2.260639 ATCACCTCACCTCAGTGGAT 57.739 50.000 0.00 0.00 44.64 3.41
705 707 5.728637 AAAAACCCAAGATGAATCACCTC 57.271 39.130 0.00 0.00 0.00 3.85
706 708 7.610580 TTTAAAAACCCAAGATGAATCACCT 57.389 32.000 0.00 0.00 0.00 4.00
708 710 7.095229 GCCTTTTAAAAACCCAAGATGAATCAC 60.095 37.037 1.66 0.00 0.00 3.06
740 742 3.143338 GCTAGTAGCAGAGGGCCC 58.857 66.667 16.46 16.46 46.50 5.80
752 754 5.499004 TCTCCATACCTGTTTTTGCTAGT 57.501 39.130 0.00 0.00 0.00 2.57
754 756 7.309744 CCAATTTCTCCATACCTGTTTTTGCTA 60.310 37.037 0.00 0.00 0.00 3.49
785 787 6.695278 CGAGATCTCACTAACTTGAGGAATTC 59.305 42.308 22.31 0.00 42.95 2.17
786 788 6.153680 ACGAGATCTCACTAACTTGAGGAATT 59.846 38.462 22.31 0.00 42.95 2.17
787 789 5.654650 ACGAGATCTCACTAACTTGAGGAAT 59.345 40.000 22.31 0.00 42.95 3.01
788 790 5.010933 ACGAGATCTCACTAACTTGAGGAA 58.989 41.667 22.31 0.00 42.95 3.36
789 791 4.590918 ACGAGATCTCACTAACTTGAGGA 58.409 43.478 22.31 0.00 42.95 3.71
790 792 4.974368 ACGAGATCTCACTAACTTGAGG 57.026 45.455 22.31 4.15 42.95 3.86
791 793 6.153067 ACAAACGAGATCTCACTAACTTGAG 58.847 40.000 22.31 4.64 43.93 3.02
792 794 6.085555 ACAAACGAGATCTCACTAACTTGA 57.914 37.500 22.31 0.00 0.00 3.02
793 795 6.771188 AACAAACGAGATCTCACTAACTTG 57.229 37.500 22.31 15.55 0.00 3.16
794 796 7.787725 AAAACAAACGAGATCTCACTAACTT 57.212 32.000 22.31 5.98 0.00 2.66
795 797 7.787725 AAAAACAAACGAGATCTCACTAACT 57.212 32.000 22.31 0.00 0.00 2.24
821 823 8.027440 TGAACAAAAATGAAACAAGTTTCCTG 57.973 30.769 19.63 12.42 46.15 3.86
842 844 5.062809 CCGCTCTAAGTTTCTCAATCTGAAC 59.937 44.000 0.00 0.00 0.00 3.18
859 861 2.231529 GGCTCATCTAGTTCCGCTCTA 58.768 52.381 0.00 0.00 0.00 2.43
947 965 1.202722 CGGTCCTACCAACCTTTGTGT 60.203 52.381 0.00 0.00 38.47 3.72
973 994 1.034838 CCCCACACTCTCTCCTCGAG 61.035 65.000 5.13 5.13 41.30 4.04
986 1007 4.051167 CCATGGCAGCTCCCCACA 62.051 66.667 0.00 0.00 34.68 4.17
1117 1148 3.496331 GGGGATCAGTGTTGAAGGAAAA 58.504 45.455 0.00 0.00 36.78 2.29
1127 1158 0.836400 AAGTGACGGGGGATCAGTGT 60.836 55.000 0.00 0.00 30.00 3.55
1146 1177 2.116238 CACGATTAGGAAGGGGAGGAA 58.884 52.381 0.00 0.00 0.00 3.36
1219 1250 2.154462 AGATTTCCAACCTGCTTGTCG 58.846 47.619 0.00 0.00 0.00 4.35
1235 1266 4.667573 GGGGGAAAGAACAGAGAAAGATT 58.332 43.478 0.00 0.00 0.00 2.40
1245 1276 0.610785 GGAATGCGGGGGAAAGAACA 60.611 55.000 0.00 0.00 0.00 3.18
1278 1309 9.751542 ATCTGCACAAATTACAGATACTACTAC 57.248 33.333 3.02 0.00 46.58 2.73
1337 1368 8.597662 CAAGAATTGTCCAAACTGAATGAAAT 57.402 30.769 0.00 0.00 42.34 2.17
1356 1387 4.216257 CCAAGTCGGTCACATTTCAAGAAT 59.784 41.667 0.00 0.00 0.00 2.40
1357 1388 3.563808 CCAAGTCGGTCACATTTCAAGAA 59.436 43.478 0.00 0.00 0.00 2.52
1358 1389 3.138304 CCAAGTCGGTCACATTTCAAGA 58.862 45.455 0.00 0.00 0.00 3.02
1359 1390 3.138304 TCCAAGTCGGTCACATTTCAAG 58.862 45.455 0.00 0.00 35.57 3.02
1360 1391 3.201353 TCCAAGTCGGTCACATTTCAA 57.799 42.857 0.00 0.00 35.57 2.69
1367 1398 2.009774 CATCCAATCCAAGTCGGTCAC 58.990 52.381 0.00 0.00 35.57 3.67
1369 1400 1.065418 ACCATCCAATCCAAGTCGGTC 60.065 52.381 0.00 0.00 35.57 4.79
1371 1402 2.434336 TCTACCATCCAATCCAAGTCGG 59.566 50.000 0.00 0.00 0.00 4.79
1372 1403 3.819564 TCTACCATCCAATCCAAGTCG 57.180 47.619 0.00 0.00 0.00 4.18
1382 1413 4.468510 ACGAACTAAACCATCTACCATCCA 59.531 41.667 0.00 0.00 0.00 3.41
1384 1415 5.291128 CACACGAACTAAACCATCTACCATC 59.709 44.000 0.00 0.00 0.00 3.51
1386 1417 4.561938 CCACACGAACTAAACCATCTACCA 60.562 45.833 0.00 0.00 0.00 3.25
1387 1418 3.930848 CCACACGAACTAAACCATCTACC 59.069 47.826 0.00 0.00 0.00 3.18
1388 1419 4.813027 TCCACACGAACTAAACCATCTAC 58.187 43.478 0.00 0.00 0.00 2.59
1404 1450 0.537653 GTAAGAGGGAGGCTCCACAC 59.462 60.000 33.27 22.33 38.64 3.82
1424 1470 4.602340 ACAAGAAGAACACACGGATACT 57.398 40.909 0.00 0.00 0.00 2.12
1520 1566 4.142609 TGGAGCTAAGAATGCAGTTAGG 57.857 45.455 12.69 0.00 0.00 2.69
1535 1581 1.353694 AGCCAGAAAAGACATGGAGCT 59.646 47.619 0.00 0.00 36.09 4.09
1544 1590 2.034124 AGCAAAGCAAGCCAGAAAAGA 58.966 42.857 0.00 0.00 0.00 2.52
1554 1600 0.524862 AATCGCTGGAGCAAAGCAAG 59.475 50.000 0.00 0.00 40.86 4.01
1586 1632 2.487762 GCCATTGTCAATTCGAACCTCA 59.512 45.455 0.00 0.00 0.00 3.86
1658 1705 8.507249 CCAATCGTTGAAATCTTTCTAGTTTCT 58.493 33.333 4.46 0.00 38.02 2.52
1659 1706 8.290325 ACCAATCGTTGAAATCTTTCTAGTTTC 58.710 33.333 4.46 0.00 38.02 2.78
1660 1707 8.166422 ACCAATCGTTGAAATCTTTCTAGTTT 57.834 30.769 4.46 0.00 38.02 2.66
1661 1708 7.745620 ACCAATCGTTGAAATCTTTCTAGTT 57.254 32.000 4.46 0.00 38.02 2.24
1662 1709 8.095169 AGTACCAATCGTTGAAATCTTTCTAGT 58.905 33.333 4.46 0.00 38.02 2.57
1663 1710 8.480643 AGTACCAATCGTTGAAATCTTTCTAG 57.519 34.615 4.46 0.00 38.02 2.43
1664 1711 7.548075 GGAGTACCAATCGTTGAAATCTTTCTA 59.452 37.037 4.46 0.00 35.81 2.10
1676 1723 1.219935 GGCGGGAGTACCAATCGTT 59.780 57.895 0.00 0.00 40.22 3.85
1692 1739 3.684788 AGCGACAATTAATATGGATCGGC 59.315 43.478 0.00 0.00 0.00 5.54
1708 1755 4.579454 AAGTTGTACTAAGTGAGCGACA 57.421 40.909 0.00 0.00 0.00 4.35
1709 1756 4.743644 ACAAAGTTGTACTAAGTGAGCGAC 59.256 41.667 0.00 0.00 40.16 5.19
1710 1757 4.940463 ACAAAGTTGTACTAAGTGAGCGA 58.060 39.130 0.00 0.00 40.16 4.93
1722 1769 8.694540 TCACTTAGTACAAGGTACAAAGTTGTA 58.305 33.333 9.01 0.00 42.35 2.41
1723 1770 7.558604 TCACTTAGTACAAGGTACAAAGTTGT 58.441 34.615 9.01 1.75 44.86 3.32
1724 1771 7.709613 ACTCACTTAGTACAAGGTACAAAGTTG 59.290 37.037 9.01 0.00 36.36 3.16
1725 1772 7.709613 CACTCACTTAGTACAAGGTACAAAGTT 59.290 37.037 9.01 0.00 35.76 2.66
1726 1773 7.069085 TCACTCACTTAGTACAAGGTACAAAGT 59.931 37.037 9.01 0.00 35.76 2.66
1727 1774 7.381678 GTCACTCACTTAGTACAAGGTACAAAG 59.618 40.741 9.01 0.00 35.76 2.77
1728 1775 7.147863 TGTCACTCACTTAGTACAAGGTACAAA 60.148 37.037 9.01 0.00 35.76 2.83
1729 1776 6.321945 TGTCACTCACTTAGTACAAGGTACAA 59.678 38.462 9.01 1.68 35.76 2.41
1730 1777 5.829391 TGTCACTCACTTAGTACAAGGTACA 59.171 40.000 9.01 0.00 35.76 2.90
1731 1778 6.323203 TGTCACTCACTTAGTACAAGGTAC 57.677 41.667 0.00 0.00 35.76 3.34
1732 1779 6.964807 TTGTCACTCACTTAGTACAAGGTA 57.035 37.500 0.00 0.00 35.76 3.08
1733 1780 5.864418 TTGTCACTCACTTAGTACAAGGT 57.136 39.130 0.00 0.00 35.76 3.50
1734 1781 8.827177 TTAATTGTCACTCACTTAGTACAAGG 57.173 34.615 0.00 0.00 35.76 3.61
1750 1797 7.073457 TCCCTCCGATTCATATTAATTGTCA 57.927 36.000 0.00 0.00 0.00 3.58
1760 1807 3.238788 TGCTACTCCCTCCGATTCATA 57.761 47.619 0.00 0.00 0.00 2.15
1764 1811 4.348168 ACAAATATGCTACTCCCTCCGATT 59.652 41.667 0.00 0.00 0.00 3.34
1767 1814 3.753294 ACAAATATGCTACTCCCTCCG 57.247 47.619 0.00 0.00 0.00 4.63
1860 1956 5.724328 CACATGTACTCACTGTCAATACCT 58.276 41.667 0.00 0.00 0.00 3.08
1922 2018 1.302752 CTGTAAGGCAGTGGCAGCA 60.303 57.895 20.04 12.69 43.71 4.41
1987 2083 6.002704 GCAACCCATCATATGAAGAGAGATT 58.997 40.000 9.99 0.00 0.00 2.40
1988 2084 5.072736 TGCAACCCATCATATGAAGAGAGAT 59.927 40.000 9.99 0.00 0.00 2.75
1989 2085 4.409901 TGCAACCCATCATATGAAGAGAGA 59.590 41.667 9.99 0.00 0.00 3.10
1990 2086 4.711399 TGCAACCCATCATATGAAGAGAG 58.289 43.478 9.99 0.73 0.00 3.20
1991 2087 4.776435 TGCAACCCATCATATGAAGAGA 57.224 40.909 9.99 0.00 0.00 3.10
1992 2088 4.641541 TGTTGCAACCCATCATATGAAGAG 59.358 41.667 26.14 0.00 0.00 2.85
1993 2089 4.398988 GTGTTGCAACCCATCATATGAAGA 59.601 41.667 26.14 0.00 0.00 2.87
2019 2115 0.450583 TCTACGTACCTGAAGCTGCG 59.549 55.000 0.00 0.00 0.00 5.18
2034 2130 4.295870 TCAATCGGCATCGTGTATTCTAC 58.704 43.478 0.00 0.00 37.69 2.59
2044 2140 6.630015 CACAAATATTTTTCAATCGGCATCG 58.370 36.000 0.00 0.00 37.82 3.84
2066 2162 8.411683 AGATTGATTTCCTTCATTATTCAGCAC 58.588 33.333 0.00 0.00 0.00 4.40
2078 2174 9.912634 TCACATAACAAAAGATTGATTTCCTTC 57.087 29.630 0.00 0.00 38.94 3.46
2096 2192 7.624706 ACTCACGATCGATTTATCACATAAC 57.375 36.000 24.34 0.00 0.00 1.89
2101 2197 5.291128 ACCAAACTCACGATCGATTTATCAC 59.709 40.000 24.34 0.00 0.00 3.06
2114 2210 3.380479 TTCTACCAGACCAAACTCACG 57.620 47.619 0.00 0.00 0.00 4.35
2146 2243 1.262417 CACTACACTGTTGCTGCTGTG 59.738 52.381 0.00 13.34 41.86 3.66
2235 2332 6.974622 CAGTTGAAGCAGAAACTACAAACATT 59.025 34.615 0.00 0.00 34.90 2.71
2251 2348 2.223782 TGCATTTGGACACAGTTGAAGC 60.224 45.455 0.00 0.00 0.00 3.86
2257 2354 3.159472 ACATGATGCATTTGGACACAGT 58.841 40.909 0.00 0.00 0.00 3.55
2267 2364 6.270815 GCTGAAGATTACAACATGATGCATT 58.729 36.000 0.00 0.00 0.00 3.56
2268 2365 5.505159 CGCTGAAGATTACAACATGATGCAT 60.505 40.000 0.00 0.00 0.00 3.96
2277 2374 3.188460 TCCAAAGCGCTGAAGATTACAAC 59.812 43.478 12.58 0.00 0.00 3.32
2291 2388 1.548986 GGCGAATTGATTCCAAAGCG 58.451 50.000 0.00 0.00 35.67 4.68
2308 2405 2.512515 GACTCCATGGCAGACGGC 60.513 66.667 6.96 0.00 43.74 5.68
2330 2427 6.494893 AAGCATTTTATAGACTTGACGCAA 57.505 33.333 0.00 0.00 0.00 4.85
2388 2488 6.255887 GCAATCTTACTTAGCGTACAAGTGAT 59.744 38.462 7.21 1.15 36.88 3.06
2429 2529 7.809238 TCATGATTCATTCAGAACCCTTCTAT 58.191 34.615 0.00 0.00 39.49 1.98
2471 2573 9.565090 AGTCATGCATGAAACATTACTGTATAT 57.435 29.630 30.24 0.00 38.75 0.86
2472 2574 8.962884 AGTCATGCATGAAACATTACTGTATA 57.037 30.769 30.24 0.00 38.75 1.47
2473 2575 7.870509 AGTCATGCATGAAACATTACTGTAT 57.129 32.000 30.24 0.00 38.75 2.29
2474 2576 7.686438 AAGTCATGCATGAAACATTACTGTA 57.314 32.000 30.24 1.09 38.75 2.74
2475 2577 6.579666 AAGTCATGCATGAAACATTACTGT 57.420 33.333 30.24 10.14 38.75 3.55
2476 2578 6.684131 CGTAAGTCATGCATGAAACATTACTG 59.316 38.462 30.24 22.26 38.75 2.74
2477 2579 6.675486 GCGTAAGTCATGCATGAAACATTACT 60.675 38.462 30.24 18.51 38.75 2.24
2478 2580 5.452302 GCGTAAGTCATGCATGAAACATTAC 59.548 40.000 30.24 27.72 38.75 1.89
2479 2581 5.353956 AGCGTAAGTCATGCATGAAACATTA 59.646 36.000 30.24 21.27 42.04 1.90
2480 2582 4.156556 AGCGTAAGTCATGCATGAAACATT 59.843 37.500 30.24 22.17 42.04 2.71
2481 2583 3.691118 AGCGTAAGTCATGCATGAAACAT 59.309 39.130 30.24 17.99 42.04 2.71
2482 2584 3.073678 AGCGTAAGTCATGCATGAAACA 58.926 40.909 30.24 15.11 42.04 2.83
2483 2585 3.125146 TCAGCGTAAGTCATGCATGAAAC 59.875 43.478 30.24 24.28 42.04 2.78
2484 2586 3.125146 GTCAGCGTAAGTCATGCATGAAA 59.875 43.478 30.24 16.14 42.04 2.69
2485 2587 2.672874 GTCAGCGTAAGTCATGCATGAA 59.327 45.455 30.24 13.22 42.04 2.57
2486 2588 2.270923 GTCAGCGTAAGTCATGCATGA 58.729 47.619 25.42 25.42 42.04 3.07
2487 2589 2.001872 TGTCAGCGTAAGTCATGCATG 58.998 47.619 21.07 21.07 42.04 4.06
2488 2590 2.385013 TGTCAGCGTAAGTCATGCAT 57.615 45.000 0.00 0.00 42.04 3.96
2489 2591 2.001872 CATGTCAGCGTAAGTCATGCA 58.998 47.619 0.00 0.00 42.04 3.96
2490 2592 2.002586 ACATGTCAGCGTAAGTCATGC 58.997 47.619 0.00 0.00 37.59 4.06
2500 2602 5.281693 TGTTCAGAAATTACATGTCAGCG 57.718 39.130 0.00 0.00 0.00 5.18
2643 2745 9.137459 TCAAAGTTTGACCCAAAATATACAAGA 57.863 29.630 14.35 0.00 35.03 3.02
2720 3075 8.803201 AAAGCTCTTTCAAATACAAAGCTAAC 57.197 30.769 0.00 0.00 37.62 2.34
2791 3146 8.825667 TGGGCTAAAGTTTGACAATAAATTTC 57.174 30.769 0.00 0.00 0.00 2.17
2839 3194 0.100146 CACTACTAACTCCGTCCGGC 59.900 60.000 0.00 0.00 34.68 6.13
2861 3216 3.515901 AGGTTTACTGGCAGGTCTCTTAG 59.484 47.826 20.34 0.00 0.00 2.18
2959 3314 7.006509 AGGCCATGCAACATTAGAACTAATAT 58.993 34.615 5.01 0.00 34.27 1.28
2969 3324 6.782082 TTATGTAAAGGCCATGCAACATTA 57.218 33.333 5.01 0.00 0.00 1.90
2970 3325 5.674052 TTATGTAAAGGCCATGCAACATT 57.326 34.783 5.01 0.00 0.00 2.71
3019 3382 9.509956 ACTTGCACTACCATATAAGTTGTTTTA 57.490 29.630 0.00 0.00 0.00 1.52
3061 3424 4.623932 ACACACCACTACACAGATCAAT 57.376 40.909 0.00 0.00 0.00 2.57
3128 3496 3.340034 TGTTCCGTTTTATAGCTGGTGG 58.660 45.455 0.00 0.00 0.00 4.61
3130 3498 4.648651 ACTTGTTCCGTTTTATAGCTGGT 58.351 39.130 0.00 0.00 0.00 4.00
3180 3548 2.872931 CTTGCCAGAGAGCAGAGGGC 62.873 65.000 0.00 0.00 45.13 5.19
3181 3549 1.221293 CTTGCCAGAGAGCAGAGGG 59.779 63.158 0.00 0.00 45.13 4.30
3182 3550 0.612229 TTCTTGCCAGAGAGCAGAGG 59.388 55.000 0.00 0.00 45.13 3.69
3183 3551 2.695127 ATTCTTGCCAGAGAGCAGAG 57.305 50.000 0.00 0.00 45.13 3.35
3184 3552 3.102972 ACTATTCTTGCCAGAGAGCAGA 58.897 45.455 0.00 0.00 45.13 4.26
3223 3591 5.705441 TGGCTTTTAGACAATAGTTCAGGTG 59.295 40.000 0.00 0.00 23.92 4.00
3567 3939 4.776795 AACGGTCAAAACAAAACTCTGT 57.223 36.364 0.00 0.00 0.00 3.41
3582 3957 3.062774 GCTTCTTCTGCTGATAAACGGTC 59.937 47.826 0.00 0.00 0.00 4.79
3585 3960 4.668576 TTGCTTCTTCTGCTGATAAACG 57.331 40.909 0.00 0.00 0.00 3.60
3634 4009 2.377310 GCTTGCGCAACTGCATTGG 61.377 57.895 24.51 12.42 45.78 3.16
3692 4067 2.725008 GGATCTGCTCCGGAGTCG 59.275 66.667 31.43 21.92 33.29 4.18
3815 4195 4.461781 GCTGGATGGCAATTATATGCTTCT 59.538 41.667 0.00 0.00 45.68 2.85
3916 4382 5.935789 TGTGTACACTATTTGTAGCCTTTCC 59.064 40.000 25.60 0.00 41.58 3.13
3926 4392 5.385617 GCAAGAAGCTGTGTACACTATTTG 58.614 41.667 25.60 19.30 41.15 2.32
3931 4397 1.140852 TGGCAAGAAGCTGTGTACACT 59.859 47.619 25.60 6.37 44.79 3.55
3950 4416 6.042143 GCATTTGGGGTTAAGTGAATGTATG 58.958 40.000 0.00 0.00 0.00 2.39
3954 4420 4.533919 TGCATTTGGGGTTAAGTGAATG 57.466 40.909 0.00 0.00 0.00 2.67
3963 4429 5.487131 AGGTTAATTGTATGCATTTGGGGTT 59.513 36.000 3.54 0.00 0.00 4.11
3973 4439 6.851609 TGTGTCATCAAGGTTAATTGTATGC 58.148 36.000 0.00 0.00 0.00 3.14
3984 4450 3.214328 GACAAGGTTGTGTCATCAAGGT 58.786 45.455 0.00 0.00 46.00 3.50
4036 4529 9.258629 TCATTGTCTCCATGGAAAATAAGAAAT 57.741 29.630 17.00 8.04 0.00 2.17
4095 4588 1.201647 TCGTCTCCTTAACTGCCTTCG 59.798 52.381 0.00 0.00 0.00 3.79
4129 4623 7.232941 GGCTCTTAGTCTTACCATAGGTCATTA 59.767 40.741 0.00 0.00 37.09 1.90
4174 4668 2.808543 ACGGAGAAGTCAGCAATTTGAC 59.191 45.455 0.00 2.57 46.14 3.18
4194 4689 3.451141 TTGGGCACAATTCAAAGTCAC 57.549 42.857 0.00 0.00 0.00 3.67
4225 4739 4.574674 TTCAGCCAGTGTCCTATCAAAT 57.425 40.909 0.00 0.00 0.00 2.32
4259 4788 5.824624 AGCTACATGTAAATTGGTCAGATGG 59.175 40.000 7.06 0.00 0.00 3.51
4270 4799 5.297776 GCAGATGGACAAGCTACATGTAAAT 59.702 40.000 7.06 0.00 0.00 1.40
4278 4807 2.005451 CAGTGCAGATGGACAAGCTAC 58.995 52.381 7.25 0.00 38.96 3.58
4297 4826 3.690139 TGAACAAAAACGTACCTTCTGCA 59.310 39.130 0.00 0.00 0.00 4.41
4340 4869 6.432403 TTTCCAGGAAATTTACTTGCCAAT 57.568 33.333 10.90 0.00 0.00 3.16
4356 4885 7.391554 TGTTCATCTTGAGTATTCTTTTCCAGG 59.608 37.037 0.00 0.00 0.00 4.45
4424 4953 3.827008 AATCCAGCTAATGCGAGAGAA 57.173 42.857 0.00 0.00 45.42 2.87
4483 5026 4.202182 CCATGGACAGGGCATTTTTGATAG 60.202 45.833 5.56 0.00 0.00 2.08
4534 5077 1.961793 TTTATTGATCGGGGGAAGCG 58.038 50.000 0.00 0.00 0.00 4.68
4540 5083 4.107127 TGGGGTAATTTATTGATCGGGG 57.893 45.455 0.00 0.00 0.00 5.73
4543 5086 6.714810 TGGAAGATGGGGTAATTTATTGATCG 59.285 38.462 0.00 0.00 0.00 3.69
4559 5102 3.760151 TCTGAAATGTTGCTGGAAGATGG 59.240 43.478 0.00 0.00 34.07 3.51
4616 5161 1.493446 TCTCGGGCCTACACTAGATGA 59.507 52.381 0.84 0.00 0.00 2.92
4640 5187 2.645838 TGAAAGTTTGCTCTCCTGCT 57.354 45.000 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.