Multiple sequence alignment - TraesCS3A01G028000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G028000 chr3A 100.000 8209 0 0 1 8209 14932394 14924186 0.000000e+00 15160.0
1 TraesCS3A01G028000 chr3A 87.988 691 62 10 45 722 14931561 14930879 0.000000e+00 797.0
2 TraesCS3A01G028000 chr3A 87.988 691 62 10 834 1516 14932350 14931673 0.000000e+00 797.0
3 TraesCS3A01G028000 chr3A 81.729 613 86 12 4644 5252 15066955 15066365 1.000000e-133 488.0
4 TraesCS3A01G028000 chr3A 77.315 745 128 24 6862 7581 15295481 15294753 1.340000e-107 401.0
5 TraesCS3A01G028000 chr3A 81.505 465 69 14 5986 6437 15065417 15064957 4.890000e-97 366.0
6 TraesCS3A01G028000 chr3A 100.000 163 0 0 8417 8579 14923978 14923816 1.400000e-77 302.0
7 TraesCS3A01G028000 chr3D 95.767 3969 133 14 4247 8201 6065250 6069197 0.000000e+00 6366.0
8 TraesCS3A01G028000 chr3D 94.780 3870 144 30 1 3857 6061400 6065224 0.000000e+00 5975.0
9 TraesCS3A01G028000 chr3D 89.062 704 50 11 45 731 6062225 6062918 0.000000e+00 848.0
10 TraesCS3A01G028000 chr3D 88.399 681 56 12 827 1497 6061438 6062105 0.000000e+00 798.0
11 TraesCS3A01G028000 chr3D 81.147 907 144 16 4350 5252 6030958 6031841 0.000000e+00 702.0
12 TraesCS3A01G028000 chr3D 82.508 606 97 3 6892 7488 6033390 6033995 2.740000e-144 523.0
13 TraesCS3A01G028000 chr3D 76.295 772 144 27 6832 7584 5872372 5873123 8.130000e-100 375.0
14 TraesCS3A01G028000 chr3D 81.116 466 72 11 5985 6437 6032859 6033321 8.190000e-95 359.0
15 TraesCS3A01G028000 chr3D 93.478 46 3 0 7804 7849 6068720 6068765 1.550000e-07 69.4
16 TraesCS3A01G028000 chr3B 94.673 3398 142 18 3188 6570 7486742 7483369 0.000000e+00 5236.0
17 TraesCS3A01G028000 chr3B 93.770 2536 122 14 673 3206 7489435 7486934 0.000000e+00 3775.0
18 TraesCS3A01G028000 chr3B 94.251 1583 76 8 6566 8142 7483228 7481655 0.000000e+00 2405.0
19 TraesCS3A01G028000 chr3B 88.588 701 59 9 45 732 7489276 7488584 0.000000e+00 832.0
20 TraesCS3A01G028000 chr3B 81.319 819 127 18 6838 7638 7595368 7594558 7.260000e-180 641.0
21 TraesCS3A01G028000 chr3B 77.744 975 164 40 5497 6448 7596318 7595374 4.530000e-152 549.0
22 TraesCS3A01G028000 chr3B 93.316 374 16 6 304 674 7489963 7489596 2.110000e-150 544.0
23 TraesCS3A01G028000 chr3B 96.140 285 9 1 1 283 7490240 7489956 1.690000e-126 464.0
24 TraesCS3A01G028000 chr3B 87.268 377 33 9 1094 1468 7489963 7489600 4.790000e-112 416.0
25 TraesCS3A01G028000 chr3B 90.323 248 22 2 827 1073 7490202 7489956 2.990000e-84 324.0
26 TraesCS3A01G028000 chr3B 93.478 46 3 0 7804 7849 7482067 7482022 1.550000e-07 69.4
27 TraesCS3A01G028000 chr3B 87.037 54 6 1 6434 6487 812823123 812823175 9.300000e-05 60.2
28 TraesCS3A01G028000 chrUn 87.356 87 7 2 6010 6096 244512876 244512794 7.090000e-16 97.1
29 TraesCS3A01G028000 chr1D 100.000 40 0 0 6444 6483 433979862 433979901 3.320000e-09 75.0
30 TraesCS3A01G028000 chr1D 100.000 40 0 0 6444 6483 434034848 434034887 3.320000e-09 75.0
31 TraesCS3A01G028000 chr1D 100.000 34 0 0 6445 6478 144796 144763 7.190000e-06 63.9
32 TraesCS3A01G028000 chr1D 100.000 34 0 0 6445 6478 176084 176051 7.190000e-06 63.9
33 TraesCS3A01G028000 chr1D 100.000 34 0 0 6445 6478 188302 188269 7.190000e-06 63.9
34 TraesCS3A01G028000 chr4A 95.238 42 1 1 6446 6487 741428949 741428989 2.000000e-06 65.8
35 TraesCS3A01G028000 chr2B 95.238 42 1 1 6446 6487 796835043 796835003 2.000000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G028000 chr3A 14923816 14932394 8578 True 4264.000000 15160 93.994000 1 8579 4 chr3A.!!$R2 8578
1 TraesCS3A01G028000 chr3A 15064957 15066955 1998 True 427.000000 488 81.617000 4644 6437 2 chr3A.!!$R3 1793
2 TraesCS3A01G028000 chr3A 15294753 15295481 728 True 401.000000 401 77.315000 6862 7581 1 chr3A.!!$R1 719
3 TraesCS3A01G028000 chr3D 6061400 6069197 7797 False 2811.280000 6366 92.297200 1 8201 5 chr3D.!!$F3 8200
4 TraesCS3A01G028000 chr3D 6030958 6033995 3037 False 528.000000 702 81.590333 4350 7488 3 chr3D.!!$F2 3138
5 TraesCS3A01G028000 chr3D 5872372 5873123 751 False 375.000000 375 76.295000 6832 7584 1 chr3D.!!$F1 752
6 TraesCS3A01G028000 chr3B 7481655 7490240 8585 True 1562.822222 5236 92.423000 1 8142 9 chr3B.!!$R1 8141
7 TraesCS3A01G028000 chr3B 7594558 7596318 1760 True 595.000000 641 79.531500 5497 7638 2 chr3B.!!$R2 2141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 298 0.039165 CCTTCTTTTGTTGCGAGGGC 60.039 55.000 0.00 0.00 40.52 5.19 F
1168 1339 0.107897 TGCACGGCTCGGTTTCATAT 60.108 50.000 0.00 0.00 0.00 1.78 F
1169 1340 1.137282 TGCACGGCTCGGTTTCATATA 59.863 47.619 0.00 0.00 0.00 0.86 F
2108 2281 1.855513 CACTGTTTGTTGTGCCCATG 58.144 50.000 0.00 0.00 0.00 3.66 F
3884 4275 0.322816 GACCATGTGAGCCCATGTGT 60.323 55.000 7.57 5.59 40.50 3.72 F
3967 4359 0.596577 TCCCGTCAGAGTCGTTTCTG 59.403 55.000 11.14 11.14 44.74 3.02 F
4124 4517 1.134995 TCTGCTCACGTCATCATGTCC 60.135 52.381 0.00 0.00 0.00 4.02 F
5856 6572 0.446222 AATTCGCACGATTTGTCCCG 59.554 50.000 0.00 0.00 0.00 5.14 F
7020 7956 0.467384 CATTGGACGCCCTCATCTCT 59.533 55.000 0.00 0.00 0.00 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1517 1690 0.462937 AAACACCACTGCAGCACGTA 60.463 50.000 15.27 0.0 0.00 3.57 R
3126 3304 0.034896 ACGAGAAGGAACCGCACAAT 59.965 50.000 0.00 0.0 0.00 2.71 R
3171 3349 4.502171 TTCAATGTGATTTGTGTGCGAT 57.498 36.364 0.00 0.0 0.00 4.58 R
3935 4326 0.250513 GACGGGAGAACAAGAGGCAT 59.749 55.000 0.00 0.0 0.00 4.40 R
4885 5281 0.700564 ACAGCCCTTCACATGGACAT 59.299 50.000 0.00 0.0 0.00 3.06 R
5625 6249 1.731709 CGGTGATTGCAAACTGATCGA 59.268 47.619 1.71 0.0 0.00 3.59 R
6083 6855 1.034838 TGCGGGAACAAACTTGTGCT 61.035 50.000 0.65 0.0 41.31 4.40 R
7125 8061 1.303155 GAAGCCACAGCCAAGCTCT 60.303 57.895 0.00 0.0 41.25 4.09 R
8426 9387 0.108615 ACAGTAGCGGACAGATGCAC 60.109 55.000 0.00 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 68 6.042777 GGATCTCTCATACACGATGTTTTGA 58.957 40.000 0.00 0.00 36.84 2.69
168 171 2.434774 GGTTTCCCGTTCCAGGCT 59.565 61.111 0.00 0.00 0.00 4.58
176 179 1.463674 CCGTTCCAGGCTTGCTAATT 58.536 50.000 0.00 0.00 0.00 1.40
295 298 0.039165 CCTTCTTTTGTTGCGAGGGC 60.039 55.000 0.00 0.00 40.52 5.19
380 383 2.561569 GCGGCTAGGTTTCATACATGT 58.438 47.619 2.69 2.69 0.00 3.21
718 887 0.179029 CGTTGTCCACCCACCTTCTT 60.179 55.000 0.00 0.00 0.00 2.52
909 1078 3.385433 TGAGTTCCCAGTGTTACTTTCGA 59.615 43.478 0.00 0.00 0.00 3.71
967 1136 0.255890 GTTCCAGGGCTGCTAATCCA 59.744 55.000 0.00 0.00 0.00 3.41
1006 1175 1.146930 CGGGGGAGTGTCATGGATG 59.853 63.158 0.00 0.00 0.00 3.51
1152 1323 2.347490 GGAGACCGAGCCTTTGCA 59.653 61.111 0.00 0.00 41.13 4.08
1168 1339 0.107897 TGCACGGCTCGGTTTCATAT 60.108 50.000 0.00 0.00 0.00 1.78
1169 1340 1.137282 TGCACGGCTCGGTTTCATATA 59.863 47.619 0.00 0.00 0.00 0.86
1174 1345 5.227908 CACGGCTCGGTTTCATATATACTT 58.772 41.667 0.00 0.00 0.00 2.24
1179 1350 8.380644 CGGCTCGGTTTCATATATACTTTTATG 58.619 37.037 0.00 0.00 0.00 1.90
1348 1519 3.664107 TGCTTGGTATGTGAGAACAGAC 58.336 45.455 0.00 0.00 0.00 3.51
1349 1520 2.668457 GCTTGGTATGTGAGAACAGACG 59.332 50.000 0.00 0.00 33.09 4.18
1373 1546 5.939764 ATATACAGTGCTCCAAGTTCTCA 57.060 39.130 0.00 0.00 0.00 3.27
1378 1551 4.070716 CAGTGCTCCAAGTTCTCATCTTT 58.929 43.478 0.00 0.00 0.00 2.52
1428 1601 9.628500 GTGTCCTCTTCCTACCATTAATATTTT 57.372 33.333 0.00 0.00 0.00 1.82
1482 1655 8.461249 AAGCATAGATAGTTTGCATCTGAATT 57.539 30.769 0.00 0.00 38.84 2.17
1576 1749 5.665916 ATGCATCCACATATATCTCGACA 57.334 39.130 0.00 0.00 0.00 4.35
1590 1763 3.067833 TCTCGACACTCTATAGCATCCG 58.932 50.000 0.00 0.00 0.00 4.18
2097 2270 2.935201 GCTCCTCTCATAGCACTGTTTG 59.065 50.000 0.00 0.00 38.63 2.93
2108 2281 1.855513 CACTGTTTGTTGTGCCCATG 58.144 50.000 0.00 0.00 0.00 3.66
2172 2345 6.369059 ACTCTTGCATAGTTTACATGATGC 57.631 37.500 0.00 3.56 44.00 3.91
2271 2449 5.601662 ACACGAATCATACTGGAATCGATT 58.398 37.500 11.20 11.20 41.49 3.34
2281 2459 5.998454 ACTGGAATCGATTTGCTATCTTG 57.002 39.130 12.81 0.00 0.00 3.02
2718 2896 6.233905 AGTTTCCTTTTTACATTGGCAGTT 57.766 33.333 0.00 0.00 0.00 3.16
2762 2940 7.762615 CCAACTCCTTTTCTGTTCACGTATATA 59.237 37.037 0.00 0.00 0.00 0.86
2819 2997 4.608470 CCGATTGTCATGCGAATTTAATCG 59.392 41.667 14.85 14.85 45.41 3.34
2888 3066 7.039011 TCGGACCTAGCATATAATTCACAGATT 60.039 37.037 0.00 0.00 0.00 2.40
2915 3093 9.605951 AGATAATTATTTAGCCCATGTGGAATT 57.394 29.630 0.00 0.00 37.39 2.17
2916 3094 9.643693 GATAATTATTTAGCCCATGTGGAATTG 57.356 33.333 0.00 0.00 37.39 2.32
2917 3095 7.436320 AATTATTTAGCCCATGTGGAATTGT 57.564 32.000 0.00 0.00 37.39 2.71
2918 3096 8.546083 AATTATTTAGCCCATGTGGAATTGTA 57.454 30.769 0.00 0.00 37.39 2.41
2919 3097 7.962995 TTATTTAGCCCATGTGGAATTGTAA 57.037 32.000 0.00 0.00 37.39 2.41
2920 3098 6.865834 ATTTAGCCCATGTGGAATTGTAAA 57.134 33.333 0.00 0.00 37.39 2.01
2921 3099 6.672266 TTTAGCCCATGTGGAATTGTAAAA 57.328 33.333 0.00 0.00 37.39 1.52
2922 3100 6.672266 TTAGCCCATGTGGAATTGTAAAAA 57.328 33.333 0.00 0.00 37.39 1.94
2923 3101 4.893608 AGCCCATGTGGAATTGTAAAAAC 58.106 39.130 0.00 0.00 37.39 2.43
2924 3102 4.346418 AGCCCATGTGGAATTGTAAAAACA 59.654 37.500 0.00 0.00 37.39 2.83
2925 3103 5.012975 AGCCCATGTGGAATTGTAAAAACAT 59.987 36.000 0.00 0.00 37.39 2.71
2926 3104 5.351189 GCCCATGTGGAATTGTAAAAACATC 59.649 40.000 0.00 0.00 37.39 3.06
2927 3105 6.462500 CCCATGTGGAATTGTAAAAACATCA 58.538 36.000 0.00 0.00 37.39 3.07
2928 3106 7.104939 CCCATGTGGAATTGTAAAAACATCAT 58.895 34.615 0.00 0.00 37.39 2.45
2929 3107 7.278424 CCCATGTGGAATTGTAAAAACATCATC 59.722 37.037 0.00 0.00 37.39 2.92
2930 3108 8.036575 CCATGTGGAATTGTAAAAACATCATCT 58.963 33.333 0.00 0.00 37.39 2.90
3171 3349 5.760743 TCTCGTATGACATGTTTGTTTCCAA 59.239 36.000 0.00 0.00 35.79 3.53
3195 3373 4.916831 TCGCACACAAATCACATTGAAATC 59.083 37.500 0.00 0.00 34.38 2.17
3286 3674 8.017373 CCTGCATGTGAAGTTTATATATTTCCG 58.983 37.037 0.00 0.00 0.00 4.30
3315 3703 7.232127 CCACTTCATTCATTCCCTTGCTATTAT 59.768 37.037 0.00 0.00 0.00 1.28
3347 3735 0.817634 TCTGCCACTTTTGTCCACCG 60.818 55.000 0.00 0.00 0.00 4.94
3359 3747 0.804933 GTCCACCGCTGGTCGTTATC 60.805 60.000 0.00 0.00 38.90 1.75
3409 3797 5.306678 TGGGCCAACTTTATTCACAGATTTT 59.693 36.000 2.13 0.00 0.00 1.82
3449 3837 5.123227 TCTCACAGTTTAGTTTCAGGTTGG 58.877 41.667 0.00 0.00 0.00 3.77
3643 4033 8.927675 ATCGAAGTAGGATAATAAGACAGAGT 57.072 34.615 0.00 0.00 0.00 3.24
3784 4174 2.203669 TGCAGCTTGGGTTGGCAT 60.204 55.556 0.00 0.00 0.00 4.40
3853 4244 2.095059 CCTTGCCGACCAAAGAATTCTG 60.095 50.000 9.17 0.00 31.94 3.02
3884 4275 0.322816 GACCATGTGAGCCCATGTGT 60.323 55.000 7.57 5.59 40.50 3.72
3889 4280 3.319755 CATGTGAGCCCATGTGTTTTTC 58.680 45.455 0.00 0.00 37.91 2.29
3908 4299 4.342862 TTCTAGCATGGAATAGTCTGCC 57.657 45.455 1.29 0.00 35.21 4.85
3919 4310 5.105106 TGGAATAGTCTGCCTATGTTTTCGA 60.105 40.000 0.00 0.00 36.47 3.71
3927 4318 4.584874 TGCCTATGTTTTCGATGGAAGAA 58.415 39.130 0.00 0.00 32.80 2.52
3952 4343 2.918712 ATATGCCTCTTGTTCTCCCG 57.081 50.000 0.00 0.00 0.00 5.14
3967 4359 0.596577 TCCCGTCAGAGTCGTTTCTG 59.403 55.000 11.14 11.14 44.74 3.02
4031 4423 4.884668 TGGTTGTACCTTTCAGTAGGAG 57.115 45.455 0.00 0.00 39.58 3.69
4112 4505 6.601264 GTTATAGTACGGTCTATCTGCTCAC 58.399 44.000 5.20 0.00 33.41 3.51
4124 4517 1.134995 TCTGCTCACGTCATCATGTCC 60.135 52.381 0.00 0.00 0.00 4.02
4130 4523 4.294232 CTCACGTCATCATGTCCTATGAC 58.706 47.826 12.89 12.89 45.52 3.06
4159 4552 2.542824 GCACGTGCCAATAGTTTTGTGT 60.543 45.455 30.12 0.00 34.31 3.72
4235 4630 9.462174 CAATATTTTTAGCTTATGCGGATGAAA 57.538 29.630 0.00 0.00 45.42 2.69
4242 4637 4.823442 AGCTTATGCGGATGAAAATGATGA 59.177 37.500 0.00 0.00 45.42 2.92
4343 4739 6.872628 ATGTGCATTATAGATGTTCACCTG 57.127 37.500 0.00 0.00 0.00 4.00
4398 4794 5.886960 GACAAGCAGATAGGTTTTGTCAT 57.113 39.130 9.93 0.00 44.22 3.06
4471 4867 2.975489 AGATCTAACCCTATGGCTGGTG 59.025 50.000 0.00 0.00 34.34 4.17
4496 4892 3.469008 AGTTCAATTGTGACACCGAGA 57.531 42.857 5.13 0.00 31.90 4.04
4557 4953 3.023832 CCCTTGTGAAGTTTGTCCTTGT 58.976 45.455 0.00 0.00 0.00 3.16
4615 5011 2.227626 CCATGTCGACGATGCTCTCTAT 59.772 50.000 11.62 0.00 0.00 1.98
4621 5017 3.039405 CGACGATGCTCTCTATGAACAC 58.961 50.000 0.00 0.00 0.00 3.32
4865 5261 7.338710 CCTATTCAAAGGAATCAAGGACTACA 58.661 38.462 0.00 0.00 42.66 2.74
4944 5341 6.485313 TGTAAGAACATTCCAACCACACTTAG 59.515 38.462 0.00 0.00 0.00 2.18
4945 5342 4.398319 AGAACATTCCAACCACACTTAGG 58.602 43.478 0.00 0.00 0.00 2.69
4951 5348 2.781174 TCCAACCACACTTAGGGAAACT 59.219 45.455 0.00 0.00 0.00 2.66
4952 5349 3.975312 TCCAACCACACTTAGGGAAACTA 59.025 43.478 0.00 0.00 0.00 2.24
4953 5350 4.600111 TCCAACCACACTTAGGGAAACTAT 59.400 41.667 0.00 0.00 0.00 2.12
5140 5537 1.247567 ACGGAAATGGGTTGCTTCAG 58.752 50.000 0.00 0.00 0.00 3.02
5392 5790 8.254508 GCATTTATTTAACCAACCTAATGACCA 58.745 33.333 0.00 0.00 0.00 4.02
5403 5801 7.039993 ACCAACCTAATGACCAATCAAGTTTAC 60.040 37.037 0.00 0.00 38.69 2.01
5625 6249 5.748402 TGATTCAAATACTGATGCTCTGGT 58.252 37.500 0.00 0.00 32.78 4.00
5741 6440 1.468054 GCTCGCCCATTGTTGACAATC 60.468 52.381 6.39 0.00 44.10 2.67
5749 6448 5.278957 GCCCATTGTTGACAATCTAGTGTTT 60.279 40.000 6.39 0.00 44.10 2.83
5856 6572 0.446222 AATTCGCACGATTTGTCCCG 59.554 50.000 0.00 0.00 0.00 5.14
5952 6675 8.298030 TCTACAGCATACATGTAAATGATTCG 57.702 34.615 10.14 0.00 32.96 3.34
5971 6694 6.644592 TGATTCGTGAATTGAAAACAATTCCC 59.355 34.615 23.52 15.98 45.83 3.97
6121 6895 2.350772 GCACTTCATTTCACTTCCACGG 60.351 50.000 0.00 0.00 0.00 4.94
6171 6945 3.119101 ACATCTCTATGTCGTTGTGGGTC 60.119 47.826 0.00 0.00 42.92 4.46
6228 7009 3.865446 CAGATTATGGACAGTGTGCAGA 58.135 45.455 22.39 15.81 37.30 4.26
6291 7072 4.080919 TGTTGATGATGGAGAAGGACGATT 60.081 41.667 0.00 0.00 0.00 3.34
6348 7129 2.202395 GGCCAAGTGAAGCAAGCCA 61.202 57.895 0.00 0.00 40.20 4.75
6364 7145 4.095036 GCAAGCCAGAGAAGTTACCATAAC 59.905 45.833 0.00 0.00 0.00 1.89
6433 7214 0.535797 CCCCCTGTCTTCGAGGTTAC 59.464 60.000 0.00 0.00 0.00 2.50
6602 7529 5.116180 TCCAAGAAGCGTTAATGATACCAG 58.884 41.667 0.00 0.00 0.00 4.00
6663 7590 4.497473 TTATGGACCGCAACTTTCTTTG 57.503 40.909 0.00 0.00 0.00 2.77
6695 7622 7.015682 TGTTTGGAAAAATAATTAGGGCACAGA 59.984 33.333 0.00 0.00 0.00 3.41
6754 7681 1.817099 CGAGATCCCTTGGCTGCAC 60.817 63.158 0.50 0.00 0.00 4.57
6876 7804 2.248248 TGTTCGAGGTCTGAGGATGTT 58.752 47.619 0.00 0.00 0.00 2.71
6878 7812 2.215942 TCGAGGTCTGAGGATGTTCA 57.784 50.000 0.00 0.00 0.00 3.18
7012 7948 4.090588 TCCGGTCATTGGACGCCC 62.091 66.667 0.00 0.00 45.28 6.13
7020 7956 0.467384 CATTGGACGCCCTCATCTCT 59.533 55.000 0.00 0.00 0.00 3.10
7102 8038 1.229428 CGACCATCAAAGTGTGTGCT 58.771 50.000 0.00 0.00 0.00 4.40
7150 8086 2.665185 GCTGTGGCTTCGTCGGTT 60.665 61.111 0.00 0.00 35.22 4.44
7183 8119 0.325933 CCTCAGCCACTTGATCACCA 59.674 55.000 0.00 0.00 0.00 4.17
7372 8326 2.106131 CATGGCCGCAGTACGCTA 59.894 61.111 0.00 0.00 41.76 4.26
7509 8463 1.522668 CGTCTTTCTTGATGGTGCCA 58.477 50.000 0.00 0.00 0.00 4.92
7561 8515 2.040178 AGGAGGTGTCTCTTGACGTTT 58.960 47.619 0.00 0.00 45.70 3.60
7581 8535 5.463286 GTTTGCATTGACAAGATGTGATCA 58.537 37.500 0.00 0.00 0.00 2.92
7612 8566 7.704899 CGTAACATACTGATTGTCCTATGTTGA 59.295 37.037 10.69 0.00 36.56 3.18
7704 8659 1.675483 TGGGCGTATGCAGCAATTTAG 59.325 47.619 9.59 0.00 45.35 1.85
7808 8763 6.057533 CCCATTCTAATTGTGATGTCTAGCA 58.942 40.000 0.00 0.00 0.00 3.49
7918 8873 4.035102 GCCCCGGCCTATCATCCC 62.035 72.222 0.00 0.00 34.56 3.85
7921 8876 2.294078 CCCGGCCTATCATCCCCTC 61.294 68.421 0.00 0.00 0.00 4.30
7954 8914 6.042143 GGACAACATGAACACAAGAAAACAT 58.958 36.000 0.00 0.00 0.00 2.71
7964 8924 4.275936 ACACAAGAAAACATAGGACTGTGC 59.724 41.667 0.00 0.00 0.00 4.57
8107 9068 2.678190 CGTGGAAGGTCTGAAGGAATCC 60.678 54.545 0.00 0.00 0.00 3.01
8129 9090 7.392766 TCCATTTGGGATACAGATCATAACT 57.607 36.000 0.00 0.00 42.15 2.24
8188 9149 6.827251 GGTAAATCTCCTTTCTACCGGAATTT 59.173 38.462 9.46 0.00 33.53 1.82
8201 9162 3.829601 ACCGGAATTTGTGGATTTTGCTA 59.170 39.130 9.46 0.00 0.00 3.49
8202 9163 4.282195 ACCGGAATTTGTGGATTTTGCTAA 59.718 37.500 9.46 0.00 0.00 3.09
8203 9164 4.864247 CCGGAATTTGTGGATTTTGCTAAG 59.136 41.667 0.00 0.00 0.00 2.18
8204 9165 4.864247 CGGAATTTGTGGATTTTGCTAAGG 59.136 41.667 0.00 0.00 0.00 2.69
8205 9166 5.336372 CGGAATTTGTGGATTTTGCTAAGGA 60.336 40.000 0.00 0.00 0.00 3.36
8206 9167 6.627953 CGGAATTTGTGGATTTTGCTAAGGAT 60.628 38.462 0.00 0.00 0.00 3.24
8207 9168 7.416213 CGGAATTTGTGGATTTTGCTAAGGATA 60.416 37.037 0.00 0.00 0.00 2.59
8208 9169 8.257306 GGAATTTGTGGATTTTGCTAAGGATAA 58.743 33.333 0.00 0.00 0.00 1.75
8438 9399 3.880591 CACCTGTGCATCTGTCCG 58.119 61.111 0.00 0.00 0.00 4.79
8439 9400 2.046892 ACCTGTGCATCTGTCCGC 60.047 61.111 0.00 0.00 0.00 5.54
8440 9401 2.267006 CCTGTGCATCTGTCCGCT 59.733 61.111 0.00 0.00 0.00 5.52
8441 9402 1.257750 ACCTGTGCATCTGTCCGCTA 61.258 55.000 0.00 0.00 0.00 4.26
8442 9403 0.807667 CCTGTGCATCTGTCCGCTAC 60.808 60.000 0.00 0.00 0.00 3.58
8443 9404 0.174389 CTGTGCATCTGTCCGCTACT 59.826 55.000 0.00 0.00 0.00 2.57
8444 9405 0.108662 TGTGCATCTGTCCGCTACTG 60.109 55.000 0.00 0.00 0.00 2.74
8445 9406 0.108615 GTGCATCTGTCCGCTACTGT 60.109 55.000 0.00 0.00 0.00 3.55
8446 9407 0.173481 TGCATCTGTCCGCTACTGTC 59.827 55.000 0.00 0.00 0.00 3.51
8447 9408 0.867753 GCATCTGTCCGCTACTGTCG 60.868 60.000 0.00 0.00 0.00 4.35
8448 9409 0.733150 CATCTGTCCGCTACTGTCGA 59.267 55.000 0.00 0.00 0.00 4.20
8449 9410 1.335182 CATCTGTCCGCTACTGTCGAT 59.665 52.381 0.00 0.00 0.00 3.59
8450 9411 0.733150 TCTGTCCGCTACTGTCGATG 59.267 55.000 0.00 0.00 0.00 3.84
8451 9412 0.452184 CTGTCCGCTACTGTCGATGT 59.548 55.000 0.00 0.00 0.00 3.06
8452 9413 0.170339 TGTCCGCTACTGTCGATGTG 59.830 55.000 0.00 0.00 0.00 3.21
8453 9414 1.138883 TCCGCTACTGTCGATGTGC 59.861 57.895 0.00 0.00 0.00 4.57
8454 9415 1.153842 CCGCTACTGTCGATGTGCA 60.154 57.895 0.00 0.00 0.00 4.57
8455 9416 0.528466 CCGCTACTGTCGATGTGCAT 60.528 55.000 0.00 0.00 0.00 3.96
8456 9417 0.848942 CGCTACTGTCGATGTGCATC 59.151 55.000 0.00 2.26 34.56 3.91
8468 9429 4.658713 GATGTGCATCGTGATGATAAGG 57.341 45.455 13.83 0.00 41.20 2.69
8469 9430 2.212652 TGTGCATCGTGATGATAAGGC 58.787 47.619 13.83 0.00 41.20 4.35
8470 9431 2.212652 GTGCATCGTGATGATAAGGCA 58.787 47.619 13.83 0.42 41.20 4.75
8471 9432 2.810274 GTGCATCGTGATGATAAGGCAT 59.190 45.455 13.83 0.00 41.20 4.40
8472 9433 2.809696 TGCATCGTGATGATAAGGCATG 59.190 45.455 13.83 0.00 41.20 4.06
8473 9434 3.069289 GCATCGTGATGATAAGGCATGA 58.931 45.455 13.83 0.00 41.20 3.07
8474 9435 3.499537 GCATCGTGATGATAAGGCATGAA 59.500 43.478 13.83 0.00 41.20 2.57
8475 9436 4.023792 GCATCGTGATGATAAGGCATGAAA 60.024 41.667 13.83 0.00 41.20 2.69
8476 9437 5.506151 GCATCGTGATGATAAGGCATGAAAA 60.506 40.000 13.83 0.00 41.20 2.29
8477 9438 5.484173 TCGTGATGATAAGGCATGAAAAC 57.516 39.130 0.00 0.00 0.00 2.43
8478 9439 5.185454 TCGTGATGATAAGGCATGAAAACT 58.815 37.500 0.00 0.00 0.00 2.66
8479 9440 6.345298 TCGTGATGATAAGGCATGAAAACTA 58.655 36.000 0.00 0.00 0.00 2.24
8480 9441 6.479990 TCGTGATGATAAGGCATGAAAACTAG 59.520 38.462 0.00 0.00 0.00 2.57
8481 9442 6.479990 CGTGATGATAAGGCATGAAAACTAGA 59.520 38.462 0.00 0.00 0.00 2.43
8482 9443 7.011389 CGTGATGATAAGGCATGAAAACTAGAA 59.989 37.037 0.00 0.00 0.00 2.10
8483 9444 8.677300 GTGATGATAAGGCATGAAAACTAGAAA 58.323 33.333 0.00 0.00 0.00 2.52
8484 9445 9.241919 TGATGATAAGGCATGAAAACTAGAAAA 57.758 29.630 0.00 0.00 0.00 2.29
8487 9448 8.686334 TGATAAGGCATGAAAACTAGAAAATCC 58.314 33.333 0.00 0.00 0.00 3.01
8488 9449 5.921962 AGGCATGAAAACTAGAAAATCCC 57.078 39.130 0.00 0.00 0.00 3.85
8489 9450 4.399303 AGGCATGAAAACTAGAAAATCCCG 59.601 41.667 0.00 0.00 0.00 5.14
8490 9451 4.157840 GGCATGAAAACTAGAAAATCCCGT 59.842 41.667 0.00 0.00 0.00 5.28
8491 9452 5.095490 GCATGAAAACTAGAAAATCCCGTG 58.905 41.667 0.00 0.00 0.00 4.94
8492 9453 5.106317 GCATGAAAACTAGAAAATCCCGTGA 60.106 40.000 0.00 0.00 0.00 4.35
8493 9454 6.569610 GCATGAAAACTAGAAAATCCCGTGAA 60.570 38.462 0.00 0.00 0.00 3.18
8494 9455 6.945938 TGAAAACTAGAAAATCCCGTGAAA 57.054 33.333 0.00 0.00 0.00 2.69
8495 9456 7.519032 TGAAAACTAGAAAATCCCGTGAAAT 57.481 32.000 0.00 0.00 0.00 2.17
8496 9457 7.947282 TGAAAACTAGAAAATCCCGTGAAATT 58.053 30.769 0.00 0.00 0.00 1.82
8497 9458 8.079809 TGAAAACTAGAAAATCCCGTGAAATTC 58.920 33.333 0.00 0.00 0.00 2.17
8498 9459 7.519032 AAACTAGAAAATCCCGTGAAATTCA 57.481 32.000 0.00 0.00 0.00 2.57
8499 9460 6.496338 ACTAGAAAATCCCGTGAAATTCAC 57.504 37.500 15.62 15.62 43.65 3.18
8509 9470 3.626028 GTGAAATTCACAGGGACACAC 57.374 47.619 20.08 0.00 46.22 3.82
8510 9471 2.948979 GTGAAATTCACAGGGACACACA 59.051 45.455 20.08 0.00 46.22 3.72
8511 9472 2.948979 TGAAATTCACAGGGACACACAC 59.051 45.455 0.00 0.00 0.00 3.82
8512 9473 1.981256 AATTCACAGGGACACACACC 58.019 50.000 0.00 0.00 0.00 4.16
8513 9474 0.843309 ATTCACAGGGACACACACCA 59.157 50.000 0.00 0.00 0.00 4.17
8514 9475 0.621082 TTCACAGGGACACACACCAA 59.379 50.000 0.00 0.00 0.00 3.67
8515 9476 0.843309 TCACAGGGACACACACCAAT 59.157 50.000 0.00 0.00 0.00 3.16
8516 9477 0.953727 CACAGGGACACACACCAATG 59.046 55.000 0.00 0.00 0.00 2.82
8517 9478 0.823356 ACAGGGACACACACCAATGC 60.823 55.000 0.00 0.00 0.00 3.56
8518 9479 0.822944 CAGGGACACACACCAATGCA 60.823 55.000 0.00 0.00 0.00 3.96
8519 9480 0.112995 AGGGACACACACCAATGCAT 59.887 50.000 0.00 0.00 0.00 3.96
8520 9481 1.354031 AGGGACACACACCAATGCATA 59.646 47.619 0.00 0.00 0.00 3.14
8521 9482 1.472480 GGGACACACACCAATGCATAC 59.528 52.381 0.00 0.00 0.00 2.39
8522 9483 1.130373 GGACACACACCAATGCATACG 59.870 52.381 0.00 0.00 0.00 3.06
8523 9484 1.804151 GACACACACCAATGCATACGT 59.196 47.619 0.00 0.00 0.00 3.57
8524 9485 1.804151 ACACACACCAATGCATACGTC 59.196 47.619 0.00 0.00 0.00 4.34
8525 9486 2.076100 CACACACCAATGCATACGTCT 58.924 47.619 0.00 0.00 0.00 4.18
8526 9487 2.076100 ACACACCAATGCATACGTCTG 58.924 47.619 0.00 0.00 0.00 3.51
8527 9488 2.076100 CACACCAATGCATACGTCTGT 58.924 47.619 0.00 0.00 0.00 3.41
8528 9489 3.258228 CACACCAATGCATACGTCTGTA 58.742 45.455 0.00 0.00 34.45 2.74
8529 9490 3.306973 CACACCAATGCATACGTCTGTAG 59.693 47.826 0.00 0.00 33.17 2.74
8530 9491 2.285220 CACCAATGCATACGTCTGTAGC 59.715 50.000 0.00 0.00 33.17 3.58
8531 9492 1.867233 CCAATGCATACGTCTGTAGCC 59.133 52.381 0.00 0.00 33.17 3.93
8532 9493 1.522676 CAATGCATACGTCTGTAGCCG 59.477 52.381 0.00 0.00 33.17 5.52
8533 9494 0.744874 ATGCATACGTCTGTAGCCGT 59.255 50.000 0.00 0.00 40.87 5.68
8534 9495 0.099968 TGCATACGTCTGTAGCCGTC 59.900 55.000 0.00 0.00 38.43 4.79
8535 9496 0.928908 GCATACGTCTGTAGCCGTCG 60.929 60.000 0.00 0.00 38.43 5.12
8536 9497 0.654160 CATACGTCTGTAGCCGTCGA 59.346 55.000 0.00 0.00 38.43 4.20
8537 9498 1.263484 CATACGTCTGTAGCCGTCGAT 59.737 52.381 0.00 0.00 38.43 3.59
8538 9499 0.654160 TACGTCTGTAGCCGTCGATG 59.346 55.000 0.00 0.00 38.43 3.84
8539 9500 1.303799 ACGTCTGTAGCCGTCGATGT 61.304 55.000 3.52 0.00 30.05 3.06
8540 9501 0.861866 CGTCTGTAGCCGTCGATGTG 60.862 60.000 3.52 0.00 0.00 3.21
8541 9502 0.170561 GTCTGTAGCCGTCGATGTGT 59.829 55.000 3.52 0.00 0.00 3.72
8542 9503 0.450583 TCTGTAGCCGTCGATGTGTC 59.549 55.000 3.52 0.00 0.00 3.67
8543 9504 0.170339 CTGTAGCCGTCGATGTGTCA 59.830 55.000 3.52 0.00 0.00 3.58
8544 9505 0.109458 TGTAGCCGTCGATGTGTCAC 60.109 55.000 3.52 0.00 0.00 3.67
8545 9506 1.132199 GTAGCCGTCGATGTGTCACG 61.132 60.000 3.52 0.00 0.00 4.35
8546 9507 1.579964 TAGCCGTCGATGTGTCACGT 61.580 55.000 3.52 0.00 31.47 4.49
8547 9508 2.716828 GCCGTCGATGTGTCACGTG 61.717 63.158 9.94 9.94 31.47 4.49
8548 9509 1.081708 CCGTCGATGTGTCACGTGA 60.082 57.895 15.76 15.76 31.47 4.35
8549 9510 0.456142 CCGTCGATGTGTCACGTGAT 60.456 55.000 23.12 5.10 31.47 3.06
8550 9511 0.907837 CGTCGATGTGTCACGTGATC 59.092 55.000 23.12 17.68 0.00 2.92
8551 9512 1.269166 GTCGATGTGTCACGTGATCC 58.731 55.000 23.12 15.33 0.00 3.36
8552 9513 0.885196 TCGATGTGTCACGTGATCCA 59.115 50.000 23.12 20.40 0.00 3.41
8553 9514 1.271102 TCGATGTGTCACGTGATCCAA 59.729 47.619 23.12 8.53 0.00 3.53
8554 9515 2.065512 CGATGTGTCACGTGATCCAAA 58.934 47.619 23.12 11.56 0.00 3.28
8555 9516 2.478514 CGATGTGTCACGTGATCCAAAA 59.521 45.455 23.12 8.23 0.00 2.44
8556 9517 3.059257 CGATGTGTCACGTGATCCAAAAA 60.059 43.478 23.12 5.81 0.00 1.94
8557 9518 3.684103 TGTGTCACGTGATCCAAAAAC 57.316 42.857 23.12 7.18 0.00 2.43
8558 9519 3.275143 TGTGTCACGTGATCCAAAAACT 58.725 40.909 23.12 0.00 0.00 2.66
8559 9520 3.692101 TGTGTCACGTGATCCAAAAACTT 59.308 39.130 23.12 0.00 0.00 2.66
8560 9521 4.035017 GTGTCACGTGATCCAAAAACTTG 58.965 43.478 23.12 0.00 0.00 3.16
8561 9522 3.692101 TGTCACGTGATCCAAAAACTTGT 59.308 39.130 23.12 0.00 0.00 3.16
8562 9523 4.156922 TGTCACGTGATCCAAAAACTTGTT 59.843 37.500 23.12 0.00 0.00 2.83
8563 9524 5.099575 GTCACGTGATCCAAAAACTTGTTT 58.900 37.500 23.12 0.00 0.00 2.83
8564 9525 5.229260 GTCACGTGATCCAAAAACTTGTTTC 59.771 40.000 23.12 0.00 0.00 2.78
8565 9526 4.502645 CACGTGATCCAAAAACTTGTTTCC 59.497 41.667 10.90 0.00 0.00 3.13
8566 9527 3.728718 CGTGATCCAAAAACTTGTTTCCG 59.271 43.478 0.00 0.00 0.00 4.30
8567 9528 3.489416 GTGATCCAAAAACTTGTTTCCGC 59.511 43.478 0.00 0.00 0.00 5.54
8568 9529 3.383185 TGATCCAAAAACTTGTTTCCGCT 59.617 39.130 0.00 0.00 0.00 5.52
8569 9530 3.430333 TCCAAAAACTTGTTTCCGCTC 57.570 42.857 0.00 0.00 0.00 5.03
8570 9531 2.755655 TCCAAAAACTTGTTTCCGCTCA 59.244 40.909 0.00 0.00 0.00 4.26
8571 9532 3.383185 TCCAAAAACTTGTTTCCGCTCAT 59.617 39.130 0.00 0.00 0.00 2.90
8572 9533 4.580995 TCCAAAAACTTGTTTCCGCTCATA 59.419 37.500 0.00 0.00 0.00 2.15
8573 9534 5.067936 TCCAAAAACTTGTTTCCGCTCATAA 59.932 36.000 0.00 0.00 0.00 1.90
8574 9535 5.402270 CCAAAAACTTGTTTCCGCTCATAAG 59.598 40.000 0.00 0.00 0.00 1.73
8575 9536 4.766404 AAACTTGTTTCCGCTCATAAGG 57.234 40.909 0.00 0.00 0.00 2.69
8576 9537 3.695830 ACTTGTTTCCGCTCATAAGGA 57.304 42.857 0.00 0.00 34.19 3.36
8577 9538 4.015872 ACTTGTTTCCGCTCATAAGGAA 57.984 40.909 0.00 0.00 44.04 3.36
8578 9539 4.589908 ACTTGTTTCCGCTCATAAGGAAT 58.410 39.130 0.00 0.00 44.94 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 68 1.751924 GAAGGCACGGTAGACAGATCT 59.248 52.381 0.00 0.00 39.15 2.75
176 179 0.256752 TCGGATCGGTTCCTACTGGA 59.743 55.000 3.75 0.00 42.99 3.86
194 197 0.393537 CCATGACACTGCCCCTCTTC 60.394 60.000 0.00 0.00 0.00 2.87
242 245 1.134098 CAGCAATGTACCTTCCCGGAT 60.134 52.381 0.73 0.00 36.31 4.18
285 288 3.056313 GATGCCAAGCCCTCGCAAC 62.056 63.158 0.00 0.00 35.85 4.17
295 298 3.513909 TGATAATGGAGGGATGCCAAG 57.486 47.619 5.86 0.00 39.21 3.61
718 887 1.600636 CCCGAAGCAGCTTTGACCA 60.601 57.895 22.45 0.00 0.00 4.02
956 1125 3.873910 TGTTCCTACTTGGATTAGCAGC 58.126 45.455 0.00 0.00 45.68 5.25
967 1136 4.322801 CCGTCTTTGGATCTGTTCCTACTT 60.323 45.833 6.35 0.00 45.68 2.24
977 1146 0.252742 ACTCCCCCGTCTTTGGATCT 60.253 55.000 0.00 0.00 0.00 2.75
988 1157 1.146930 CATCCATGACACTCCCCCG 59.853 63.158 0.00 0.00 0.00 5.73
1131 1302 1.229209 AAAGGCTCGGTCTCCCTGA 60.229 57.895 0.00 0.00 0.00 3.86
1146 1317 1.082104 GAAACCGAGCCGTGCAAAG 60.082 57.895 0.00 0.00 0.00 2.77
1152 1323 5.464030 AAGTATATATGAAACCGAGCCGT 57.536 39.130 0.00 0.00 0.00 5.68
1249 1420 5.502220 GCAATCAAAGTGCAATCGTGTTTTT 60.502 36.000 0.00 0.00 41.80 1.94
1297 1468 7.283127 ACTTGAGTGTTGTCTGTAATTTGTCAT 59.717 33.333 0.00 0.00 0.00 3.06
1348 1519 5.833082 AGAACTTGGAGCACTGTATATACG 58.167 41.667 8.33 5.91 0.00 3.06
1349 1520 6.806751 TGAGAACTTGGAGCACTGTATATAC 58.193 40.000 5.89 5.89 0.00 1.47
1373 1546 3.245052 CCAGGGAACAAGGACTGAAAGAT 60.245 47.826 0.00 0.00 37.43 2.40
1378 1551 0.764890 CACCAGGGAACAAGGACTGA 59.235 55.000 0.00 0.00 32.86 3.41
1456 1629 7.870509 TTCAGATGCAAACTATCTATGCTTT 57.129 32.000 0.00 0.00 40.66 3.51
1482 1655 2.040813 AGTGGACAACGTAGGTCTCCTA 59.959 50.000 16.82 0.00 34.61 2.94
1517 1690 0.462937 AAACACCACTGCAGCACGTA 60.463 50.000 15.27 0.00 0.00 3.57
1553 1726 6.378280 AGTGTCGAGATATATGTGGATGCATA 59.622 38.462 0.00 0.00 36.01 3.14
1576 1749 6.102663 GCAATACATTCGGATGCTATAGAGT 58.897 40.000 2.75 0.00 36.72 3.24
1590 1763 9.350357 CTTATTCAATAGCCATGCAATACATTC 57.650 33.333 0.00 0.00 36.64 2.67
2061 2234 1.420312 GAGCGAGTTAAAGGCGTGC 59.580 57.895 0.00 0.00 0.00 5.34
2117 2290 9.073475 AGTTGTGCCAAAATATACAAGTCTTAA 57.927 29.630 0.00 0.00 32.82 1.85
2149 2322 6.369059 GCATCATGTAAACTATGCAAGAGT 57.631 37.500 9.29 0.00 43.30 3.24
2281 2459 2.902343 GGCATGTTCCGGGCTAGC 60.902 66.667 6.04 6.04 0.00 3.42
2358 2536 6.951778 TGGCAGTCATACCTATAGTGCTAATA 59.048 38.462 8.58 0.00 0.00 0.98
2718 2896 2.933573 TGGCATGCATGTGATGACATA 58.066 42.857 26.79 0.93 41.12 2.29
2762 2940 1.271840 TAATCCGGAGCTGCCCAAGT 61.272 55.000 11.34 0.00 0.00 3.16
2819 2997 4.953667 TGAGATCCTGACATACTGATTGC 58.046 43.478 0.00 0.00 0.00 3.56
2825 3003 4.221530 TGCTCATGAGATCCTGACATACT 58.778 43.478 27.04 0.00 0.00 2.12
2913 3091 8.585471 AGACCATGAGATGATGTTTTTACAAT 57.415 30.769 0.00 0.00 0.00 2.71
2914 3092 8.408043 AAGACCATGAGATGATGTTTTTACAA 57.592 30.769 0.00 0.00 0.00 2.41
2915 3093 8.946085 GTAAGACCATGAGATGATGTTTTTACA 58.054 33.333 0.00 0.00 0.00 2.41
2916 3094 8.398665 GGTAAGACCATGAGATGATGTTTTTAC 58.601 37.037 0.00 0.00 38.42 2.01
2917 3095 8.106462 TGGTAAGACCATGAGATGATGTTTTTA 58.894 33.333 0.00 0.00 44.79 1.52
2918 3096 6.947733 TGGTAAGACCATGAGATGATGTTTTT 59.052 34.615 0.00 0.00 44.79 1.94
2919 3097 6.484288 TGGTAAGACCATGAGATGATGTTTT 58.516 36.000 0.00 0.00 44.79 2.43
2920 3098 6.065976 TGGTAAGACCATGAGATGATGTTT 57.934 37.500 0.00 0.00 44.79 2.83
2921 3099 5.698741 TGGTAAGACCATGAGATGATGTT 57.301 39.130 0.00 0.00 44.79 2.71
2990 3168 9.309516 GCATGAGATGATGTTTTTACAATTCAT 57.690 29.630 0.00 0.00 0.00 2.57
3040 3218 2.222007 TGTTGATGCAAAACAGCACC 57.778 45.000 12.82 0.00 46.28 5.01
3126 3304 0.034896 ACGAGAAGGAACCGCACAAT 59.965 50.000 0.00 0.00 0.00 2.71
3171 3349 4.502171 TTCAATGTGATTTGTGTGCGAT 57.498 36.364 0.00 0.00 0.00 4.58
3286 3674 3.372440 AGGGAATGAATGAAGTGGACC 57.628 47.619 0.00 0.00 0.00 4.46
3315 3703 0.776810 TGGCAGAGAACCCATGGAAA 59.223 50.000 15.22 0.00 0.00 3.13
3347 3735 3.195825 AGCCTATATGGATAACGACCAGC 59.804 47.826 0.00 0.00 40.89 4.85
3359 3747 9.436957 AAGAAAAACATATACGAGCCTATATGG 57.563 33.333 12.70 0.00 39.77 2.74
3382 3770 3.826157 CTGTGAATAAAGTTGGCCCAAGA 59.174 43.478 0.00 0.00 0.00 3.02
3426 3814 5.123227 CCAACCTGAAACTAAACTGTGAGA 58.877 41.667 0.00 0.00 0.00 3.27
3427 3815 4.881850 ACCAACCTGAAACTAAACTGTGAG 59.118 41.667 0.00 0.00 0.00 3.51
3428 3816 4.850680 ACCAACCTGAAACTAAACTGTGA 58.149 39.130 0.00 0.00 0.00 3.58
3429 3817 5.576447 AACCAACCTGAAACTAAACTGTG 57.424 39.130 0.00 0.00 0.00 3.66
3430 3818 6.350696 GGAAAACCAACCTGAAACTAAACTGT 60.351 38.462 0.00 0.00 0.00 3.55
3431 3819 6.040247 GGAAAACCAACCTGAAACTAAACTG 58.960 40.000 0.00 0.00 0.00 3.16
3432 3820 5.955959 AGGAAAACCAACCTGAAACTAAACT 59.044 36.000 0.00 0.00 34.99 2.66
3433 3821 6.216801 AGGAAAACCAACCTGAAACTAAAC 57.783 37.500 0.00 0.00 34.99 2.01
3784 4174 1.630369 CTGGAATCTCAAGACCCCACA 59.370 52.381 0.00 0.00 0.00 4.17
3845 4236 5.180492 TGGTCGTAAAAATTCGCAGAATTCT 59.820 36.000 0.88 0.88 45.90 2.40
3846 4237 5.387279 TGGTCGTAAAAATTCGCAGAATTC 58.613 37.500 14.08 0.00 45.90 2.17
3853 4244 4.073169 TCACATGGTCGTAAAAATTCGC 57.927 40.909 0.00 0.00 0.00 4.70
3884 4275 5.590259 GGCAGACTATTCCATGCTAGAAAAA 59.410 40.000 0.00 0.00 38.71 1.94
3889 4280 5.046735 ACATAGGCAGACTATTCCATGCTAG 60.047 44.000 0.00 0.00 40.42 3.42
3908 4299 5.523916 ACGGATTCTTCCATCGAAAACATAG 59.476 40.000 0.00 0.00 42.74 2.23
3919 4310 4.780021 AGAGGCATATACGGATTCTTCCAT 59.220 41.667 0.00 0.00 42.74 3.41
3927 4318 4.021016 GGAGAACAAGAGGCATATACGGAT 60.021 45.833 0.00 0.00 0.00 4.18
3933 4324 2.103263 GACGGGAGAACAAGAGGCATAT 59.897 50.000 0.00 0.00 0.00 1.78
3935 4326 0.250513 GACGGGAGAACAAGAGGCAT 59.749 55.000 0.00 0.00 0.00 4.40
3941 4332 1.401670 CGACTCTGACGGGAGAACAAG 60.402 57.143 8.82 0.00 37.13 3.16
3952 4343 2.062519 GCTTCCAGAAACGACTCTGAC 58.937 52.381 16.67 3.78 44.82 3.51
4078 4470 7.840342 AGACCGTACTATAACGACATATAGG 57.160 40.000 14.51 0.00 45.68 2.57
4086 4478 5.545588 AGCAGATAGACCGTACTATAACGA 58.454 41.667 0.00 0.00 45.68 3.85
4097 4489 0.733150 TGACGTGAGCAGATAGACCG 59.267 55.000 0.00 0.00 0.00 4.79
4124 4517 3.364621 GGCACGTGCAAAATTTGTCATAG 59.635 43.478 38.60 0.00 44.36 2.23
4130 4523 3.740321 ACTATTGGCACGTGCAAAATTTG 59.260 39.130 38.60 28.84 44.36 2.32
4133 4526 3.658757 AACTATTGGCACGTGCAAAAT 57.341 38.095 38.60 34.10 44.36 1.82
4317 4713 6.263842 AGGTGAACATCTATAATGCACATTGG 59.736 38.462 6.13 0.00 32.50 3.16
4343 4739 3.013921 TCATAAATGGCGGAAGTTGGTC 58.986 45.455 0.00 0.00 0.00 4.02
4398 4794 4.834496 AGATGCTCTCAAACCCAATTTTCA 59.166 37.500 0.00 0.00 0.00 2.69
4471 4867 4.693566 TCGGTGTCACAATTGAACTTATCC 59.306 41.667 13.59 9.84 31.90 2.59
4496 4892 2.027192 TGCCTCCGTCAAATTCTAGCTT 60.027 45.455 0.00 0.00 0.00 3.74
4615 5011 3.827876 TCGTATCCCAAGTGTAGTGTTCA 59.172 43.478 0.00 0.00 0.00 3.18
4621 5017 2.623889 CCCTCTCGTATCCCAAGTGTAG 59.376 54.545 0.00 0.00 0.00 2.74
4724 5120 8.526978 TGTATTTGGTGCTAGATAAATTGCAAA 58.473 29.630 1.71 0.00 37.17 3.68
4885 5281 0.700564 ACAGCCCTTCACATGGACAT 59.299 50.000 0.00 0.00 0.00 3.06
4980 5377 4.155462 ACATGTGACATCAGCTGAATCAAC 59.845 41.667 26.91 21.57 0.00 3.18
4987 5384 7.529158 TGTAAATTAACATGTGACATCAGCTG 58.471 34.615 7.63 7.63 0.00 4.24
4988 5385 7.686438 TGTAAATTAACATGTGACATCAGCT 57.314 32.000 0.00 0.00 0.00 4.24
5140 5537 3.088532 TGTGCAACTACCCATTTGGATC 58.911 45.455 0.00 0.00 38.04 3.36
5252 5649 8.770828 ACAAGGCATACGTTCATATAATAACAC 58.229 33.333 0.00 0.00 0.00 3.32
5382 5779 7.548075 ACGTAGTAAACTTGATTGGTCATTAGG 59.452 37.037 0.00 0.00 41.94 2.69
5392 5790 5.994887 TTGCACACGTAGTAAACTTGATT 57.005 34.783 0.00 0.00 41.61 2.57
5403 5801 7.618442 ACTCGAATATAAATTTGCACACGTAG 58.382 34.615 0.00 4.62 0.00 3.51
5625 6249 1.731709 CGGTGATTGCAAACTGATCGA 59.268 47.619 1.71 0.00 0.00 3.59
5749 6448 4.443881 CCTGATGATTGAGCTGGTGTATCA 60.444 45.833 0.00 0.00 0.00 2.15
5926 6649 8.929746 CGAATCATTTACATGTATGCTGTAGAT 58.070 33.333 6.36 1.79 31.17 1.98
6083 6855 1.034838 TGCGGGAACAAACTTGTGCT 61.035 50.000 0.65 0.00 41.31 4.40
6171 6945 1.269726 GGCAAACACATCACAAGTGGG 60.270 52.381 0.00 0.00 41.21 4.61
6364 7145 4.944962 TTAAGCAAACTCATGTCCATCG 57.055 40.909 0.00 0.00 0.00 3.84
6433 7214 4.580580 ACCTTGCTAGTTGGTGAAAGAAAG 59.419 41.667 3.30 0.00 32.16 2.62
6588 7514 9.245962 CTCTAAAGGTTACTGGTATCATTAACG 57.754 37.037 9.40 0.00 38.87 3.18
6602 7529 6.512342 TGACTACTCTGCTCTAAAGGTTAC 57.488 41.667 0.00 0.00 0.00 2.50
6695 7622 9.872684 ACATGATAGATGAAAGAAATTACCCAT 57.127 29.630 0.00 0.00 0.00 4.00
6728 7655 3.199946 AGCCAAGGGATCTCGACAATTAA 59.800 43.478 0.00 0.00 0.00 1.40
6830 7757 9.807649 AAATAGAACAATAAATTGATGGAGCAC 57.192 29.630 9.60 0.00 40.14 4.40
6876 7804 8.910666 CACTGCACAAAATTTTAACGATTATGA 58.089 29.630 2.44 0.00 0.00 2.15
6878 7812 7.383572 TGCACTGCACAAAATTTTAACGATTAT 59.616 29.630 2.44 0.00 31.71 1.28
7012 7948 4.797800 TGACTGTCAAGGAAGAGATGAG 57.202 45.455 8.27 0.00 0.00 2.90
7102 8038 2.359850 GAAGCACGGCACATGGGA 60.360 61.111 0.00 0.00 0.00 4.37
7125 8061 1.303155 GAAGCCACAGCCAAGCTCT 60.303 57.895 0.00 0.00 41.25 4.09
7297 8233 2.359850 GAGCACGCCCATGACCAA 60.360 61.111 0.00 0.00 0.00 3.67
7372 8326 1.340405 ACCATTCGCCTGAAGCTTGAT 60.340 47.619 2.10 0.00 40.39 2.57
7509 8463 4.225267 CCAGAACCAACCAGATAAGTAGGT 59.775 45.833 0.00 0.00 37.20 3.08
7561 8515 4.944930 TCATGATCACATCTTGTCAATGCA 59.055 37.500 0.00 0.00 36.26 3.96
7581 8535 7.055667 AGGACAATCAGTATGTTACGATCAT 57.944 36.000 0.00 0.00 37.40 2.45
7692 8647 8.786826 AAATACTACTACACTAAATTGCTGCA 57.213 30.769 0.00 0.00 0.00 4.41
7704 8659 6.481954 AGCTGCAACAAAATACTACTACAC 57.518 37.500 1.02 0.00 0.00 2.90
7745 8700 9.976511 AAATCCTGATAAATCAAGCAACATATG 57.023 29.630 0.00 0.00 36.18 1.78
7761 8716 4.953579 GCAAACTTACCCCAAATCCTGATA 59.046 41.667 0.00 0.00 0.00 2.15
7808 8763 8.355169 CAAGCAACATATATATTTGGAGTGCTT 58.645 33.333 23.03 23.03 36.91 3.91
7892 8847 0.620410 TAGGCCGGGGCATGCTATAT 60.620 55.000 23.67 1.41 44.11 0.86
7893 8848 0.620410 ATAGGCCGGGGCATGCTATA 60.620 55.000 23.67 5.39 44.11 1.31
7918 8873 1.191535 TGTTGTCCTATCGGTGGAGG 58.808 55.000 0.00 0.00 33.78 4.30
7921 8876 2.936498 GTTCATGTTGTCCTATCGGTGG 59.064 50.000 0.00 0.00 0.00 4.61
7954 8914 3.322369 CATGTTAACACGCACAGTCCTA 58.678 45.455 11.22 0.00 0.00 2.94
7964 8924 7.129109 ACAAAATCTAGTCCATGTTAACACG 57.871 36.000 11.22 1.70 0.00 4.49
8107 9068 9.170734 CCATAGTTATGATCTGTATCCCAAATG 57.829 37.037 0.74 0.00 35.75 2.32
8129 9090 8.994500 TGGGTAGATACATGTAAAAAGTCCATA 58.006 33.333 10.14 0.08 0.00 2.74
8167 9128 5.648092 CACAAATTCCGGTAGAAAGGAGATT 59.352 40.000 0.00 0.00 38.21 2.40
8421 9382 2.393768 GCGGACAGATGCACAGGTG 61.394 63.158 0.00 0.00 0.00 4.00
8422 9383 1.257750 TAGCGGACAGATGCACAGGT 61.258 55.000 0.00 0.00 0.00 4.00
8423 9384 0.807667 GTAGCGGACAGATGCACAGG 60.808 60.000 0.00 0.00 0.00 4.00
8424 9385 0.174389 AGTAGCGGACAGATGCACAG 59.826 55.000 0.00 0.00 0.00 3.66
8425 9386 0.108662 CAGTAGCGGACAGATGCACA 60.109 55.000 0.00 0.00 0.00 4.57
8426 9387 0.108615 ACAGTAGCGGACAGATGCAC 60.109 55.000 0.00 0.00 0.00 4.57
8427 9388 0.173481 GACAGTAGCGGACAGATGCA 59.827 55.000 0.00 0.00 0.00 3.96
8428 9389 0.867753 CGACAGTAGCGGACAGATGC 60.868 60.000 0.00 0.00 0.00 3.91
8429 9390 0.733150 TCGACAGTAGCGGACAGATG 59.267 55.000 0.00 0.00 0.00 2.90
8430 9391 1.335182 CATCGACAGTAGCGGACAGAT 59.665 52.381 0.00 0.00 0.00 2.90
8431 9392 0.733150 CATCGACAGTAGCGGACAGA 59.267 55.000 0.00 0.00 0.00 3.41
8432 9393 0.452184 ACATCGACAGTAGCGGACAG 59.548 55.000 0.00 0.00 0.00 3.51
8433 9394 0.170339 CACATCGACAGTAGCGGACA 59.830 55.000 0.00 0.00 0.00 4.02
8434 9395 1.140407 GCACATCGACAGTAGCGGAC 61.140 60.000 0.00 0.00 0.00 4.79
8435 9396 1.138883 GCACATCGACAGTAGCGGA 59.861 57.895 0.00 0.00 0.00 5.54
8436 9397 0.528466 ATGCACATCGACAGTAGCGG 60.528 55.000 0.00 0.00 0.00 5.52
8437 9398 0.848942 GATGCACATCGACAGTAGCG 59.151 55.000 0.00 0.00 0.00 4.26
8447 9408 3.120408 GCCTTATCATCACGATGCACATC 60.120 47.826 1.99 0.31 38.65 3.06
8448 9409 2.810274 GCCTTATCATCACGATGCACAT 59.190 45.455 1.99 0.00 38.65 3.21
8449 9410 2.212652 GCCTTATCATCACGATGCACA 58.787 47.619 1.99 0.00 38.65 4.57
8450 9411 2.212652 TGCCTTATCATCACGATGCAC 58.787 47.619 1.99 0.00 38.65 4.57
8451 9412 2.618442 TGCCTTATCATCACGATGCA 57.382 45.000 1.99 0.00 38.65 3.96
8452 9413 3.069289 TCATGCCTTATCATCACGATGC 58.931 45.455 1.99 0.00 38.65 3.91
8453 9414 5.678132 TTTCATGCCTTATCATCACGATG 57.322 39.130 0.33 0.33 40.09 3.84
8454 9415 5.824624 AGTTTTCATGCCTTATCATCACGAT 59.175 36.000 0.00 0.00 38.21 3.73
8455 9416 5.185454 AGTTTTCATGCCTTATCATCACGA 58.815 37.500 0.00 0.00 0.00 4.35
8456 9417 5.490139 AGTTTTCATGCCTTATCATCACG 57.510 39.130 0.00 0.00 0.00 4.35
8457 9418 7.792374 TCTAGTTTTCATGCCTTATCATCAC 57.208 36.000 0.00 0.00 0.00 3.06
8458 9419 8.806429 TTTCTAGTTTTCATGCCTTATCATCA 57.194 30.769 0.00 0.00 0.00 3.07
8461 9422 8.686334 GGATTTTCTAGTTTTCATGCCTTATCA 58.314 33.333 0.00 0.00 0.00 2.15
8462 9423 8.138074 GGGATTTTCTAGTTTTCATGCCTTATC 58.862 37.037 0.00 0.00 0.00 1.75
8463 9424 7.201821 CGGGATTTTCTAGTTTTCATGCCTTAT 60.202 37.037 0.00 0.00 0.00 1.73
8464 9425 6.094881 CGGGATTTTCTAGTTTTCATGCCTTA 59.905 38.462 0.00 0.00 0.00 2.69
8465 9426 5.105756 CGGGATTTTCTAGTTTTCATGCCTT 60.106 40.000 0.00 0.00 0.00 4.35
8466 9427 4.399303 CGGGATTTTCTAGTTTTCATGCCT 59.601 41.667 0.00 0.00 0.00 4.75
8467 9428 4.157840 ACGGGATTTTCTAGTTTTCATGCC 59.842 41.667 0.00 0.00 0.00 4.40
8468 9429 5.095490 CACGGGATTTTCTAGTTTTCATGC 58.905 41.667 0.00 0.00 0.00 4.06
8469 9430 6.494893 TCACGGGATTTTCTAGTTTTCATG 57.505 37.500 0.00 0.00 0.00 3.07
8470 9431 7.519032 TTTCACGGGATTTTCTAGTTTTCAT 57.481 32.000 0.00 0.00 0.00 2.57
8471 9432 6.945938 TTTCACGGGATTTTCTAGTTTTCA 57.054 33.333 0.00 0.00 0.00 2.69
8472 9433 8.079809 TGAATTTCACGGGATTTTCTAGTTTTC 58.920 33.333 10.40 0.00 0.00 2.29
8473 9434 7.865889 GTGAATTTCACGGGATTTTCTAGTTTT 59.134 33.333 13.42 0.00 37.67 2.43
8474 9435 7.368059 GTGAATTTCACGGGATTTTCTAGTTT 58.632 34.615 13.42 0.00 37.67 2.66
8475 9436 6.909909 GTGAATTTCACGGGATTTTCTAGTT 58.090 36.000 13.42 0.00 37.67 2.24
8476 9437 6.496338 GTGAATTTCACGGGATTTTCTAGT 57.504 37.500 13.42 0.00 37.67 2.57
8490 9451 2.948979 GTGTGTGTCCCTGTGAATTTCA 59.051 45.455 0.00 0.00 0.00 2.69
8491 9452 2.293399 GGTGTGTGTCCCTGTGAATTTC 59.707 50.000 0.00 0.00 0.00 2.17
8492 9453 2.306847 GGTGTGTGTCCCTGTGAATTT 58.693 47.619 0.00 0.00 0.00 1.82
8493 9454 1.214175 TGGTGTGTGTCCCTGTGAATT 59.786 47.619 0.00 0.00 0.00 2.17
8494 9455 0.843309 TGGTGTGTGTCCCTGTGAAT 59.157 50.000 0.00 0.00 0.00 2.57
8495 9456 0.621082 TTGGTGTGTGTCCCTGTGAA 59.379 50.000 0.00 0.00 0.00 3.18
8496 9457 0.843309 ATTGGTGTGTGTCCCTGTGA 59.157 50.000 0.00 0.00 0.00 3.58
8497 9458 0.953727 CATTGGTGTGTGTCCCTGTG 59.046 55.000 0.00 0.00 0.00 3.66
8498 9459 0.823356 GCATTGGTGTGTGTCCCTGT 60.823 55.000 0.00 0.00 0.00 4.00
8499 9460 0.822944 TGCATTGGTGTGTGTCCCTG 60.823 55.000 0.00 0.00 0.00 4.45
8500 9461 0.112995 ATGCATTGGTGTGTGTCCCT 59.887 50.000 0.00 0.00 0.00 4.20
8501 9462 1.472480 GTATGCATTGGTGTGTGTCCC 59.528 52.381 3.54 0.00 0.00 4.46
8502 9463 1.130373 CGTATGCATTGGTGTGTGTCC 59.870 52.381 3.54 0.00 0.00 4.02
8503 9464 1.804151 ACGTATGCATTGGTGTGTGTC 59.196 47.619 3.54 0.00 0.00 3.67
8504 9465 1.804151 GACGTATGCATTGGTGTGTGT 59.196 47.619 3.54 0.00 0.00 3.72
8505 9466 2.076100 AGACGTATGCATTGGTGTGTG 58.924 47.619 3.54 0.00 0.00 3.82
8506 9467 2.076100 CAGACGTATGCATTGGTGTGT 58.924 47.619 3.54 0.00 0.00 3.72
8507 9468 2.076100 ACAGACGTATGCATTGGTGTG 58.924 47.619 19.03 19.03 0.00 3.82
8508 9469 2.472695 ACAGACGTATGCATTGGTGT 57.527 45.000 10.69 3.98 0.00 4.16
8509 9470 2.285220 GCTACAGACGTATGCATTGGTG 59.715 50.000 10.69 3.36 0.00 4.17
8510 9471 2.550978 GCTACAGACGTATGCATTGGT 58.449 47.619 10.69 2.80 0.00 3.67
8511 9472 1.867233 GGCTACAGACGTATGCATTGG 59.133 52.381 10.69 0.00 0.00 3.16
8512 9473 1.522676 CGGCTACAGACGTATGCATTG 59.477 52.381 10.69 0.00 42.66 2.82
8513 9474 1.852942 CGGCTACAGACGTATGCATT 58.147 50.000 10.69 0.00 42.66 3.56
8514 9475 3.569916 CGGCTACAGACGTATGCAT 57.430 52.632 10.69 3.79 42.66 3.96
8522 9483 0.170561 ACACATCGACGGCTACAGAC 59.829 55.000 0.00 0.00 0.00 3.51
8523 9484 0.450583 GACACATCGACGGCTACAGA 59.549 55.000 0.00 0.00 0.00 3.41
8524 9485 0.170339 TGACACATCGACGGCTACAG 59.830 55.000 0.00 0.00 0.00 2.74
8525 9486 0.109458 GTGACACATCGACGGCTACA 60.109 55.000 0.00 0.00 0.00 2.74
8526 9487 1.132199 CGTGACACATCGACGGCTAC 61.132 60.000 6.37 0.00 0.00 3.58
8527 9488 1.135939 CGTGACACATCGACGGCTA 59.864 57.895 6.37 0.00 0.00 3.93
8528 9489 2.126463 CGTGACACATCGACGGCT 60.126 61.111 6.37 0.00 0.00 5.52
8529 9490 2.430244 ACGTGACACATCGACGGC 60.430 61.111 6.37 0.00 35.20 5.68
8530 9491 0.456142 ATCACGTGACACATCGACGG 60.456 55.000 22.71 0.00 35.20 4.79
8531 9492 0.907837 GATCACGTGACACATCGACG 59.092 55.000 22.71 0.00 36.24 5.12
8532 9493 1.269166 GGATCACGTGACACATCGAC 58.731 55.000 22.71 5.04 0.00 4.20
8533 9494 0.885196 TGGATCACGTGACACATCGA 59.115 50.000 22.71 9.00 0.00 3.59
8534 9495 1.708822 TTGGATCACGTGACACATCG 58.291 50.000 22.71 0.00 0.00 3.84
8535 9496 4.024048 AGTTTTTGGATCACGTGACACATC 60.024 41.667 22.71 14.36 0.00 3.06
8536 9497 3.882888 AGTTTTTGGATCACGTGACACAT 59.117 39.130 22.71 4.38 0.00 3.21
8537 9498 3.275143 AGTTTTTGGATCACGTGACACA 58.725 40.909 22.71 19.44 0.00 3.72
8538 9499 3.963383 AGTTTTTGGATCACGTGACAC 57.037 42.857 22.71 16.93 0.00 3.67
8539 9500 3.692101 ACAAGTTTTTGGATCACGTGACA 59.308 39.130 22.71 12.88 38.66 3.58
8540 9501 4.287238 ACAAGTTTTTGGATCACGTGAC 57.713 40.909 22.71 14.46 38.66 3.67
8541 9502 4.974368 AACAAGTTTTTGGATCACGTGA 57.026 36.364 22.48 22.48 38.66 4.35
8542 9503 4.502645 GGAAACAAGTTTTTGGATCACGTG 59.497 41.667 9.94 9.94 38.66 4.49
8543 9504 4.678622 GGAAACAAGTTTTTGGATCACGT 58.321 39.130 0.00 0.00 38.66 4.49
8544 9505 3.728718 CGGAAACAAGTTTTTGGATCACG 59.271 43.478 0.00 0.00 38.66 4.35
8545 9506 3.489416 GCGGAAACAAGTTTTTGGATCAC 59.511 43.478 0.00 0.00 38.66 3.06
8546 9507 3.383185 AGCGGAAACAAGTTTTTGGATCA 59.617 39.130 0.00 0.00 38.66 2.92
8547 9508 3.977427 AGCGGAAACAAGTTTTTGGATC 58.023 40.909 0.00 0.00 38.66 3.36
8548 9509 3.383185 TGAGCGGAAACAAGTTTTTGGAT 59.617 39.130 0.00 0.00 38.66 3.41
8549 9510 2.755655 TGAGCGGAAACAAGTTTTTGGA 59.244 40.909 0.00 0.00 38.66 3.53
8550 9511 3.157932 TGAGCGGAAACAAGTTTTTGG 57.842 42.857 0.00 0.00 38.66 3.28
8551 9512 5.402270 CCTTATGAGCGGAAACAAGTTTTTG 59.598 40.000 0.00 0.00 40.24 2.44
8552 9513 5.300792 TCCTTATGAGCGGAAACAAGTTTTT 59.699 36.000 0.00 0.00 32.11 1.94
8553 9514 4.825085 TCCTTATGAGCGGAAACAAGTTTT 59.175 37.500 0.00 0.00 32.11 2.43
8554 9515 4.394729 TCCTTATGAGCGGAAACAAGTTT 58.605 39.130 0.00 0.00 35.14 2.66
8555 9516 4.015872 TCCTTATGAGCGGAAACAAGTT 57.984 40.909 0.00 0.00 0.00 2.66
8556 9517 3.695830 TCCTTATGAGCGGAAACAAGT 57.304 42.857 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.