Multiple sequence alignment - TraesCS3A01G027500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G027500 chr3A 100.000 4096 0 0 1 4096 14763606 14767701 0.000000e+00 7564.0
1 TraesCS3A01G027500 chr3A 77.794 680 130 16 2428 3092 13405852 13405179 2.290000e-107 399.0
2 TraesCS3A01G027500 chr3A 80.563 355 45 14 1843 2186 13406409 13406068 6.800000e-63 252.0
3 TraesCS3A01G027500 chr3D 94.505 1747 74 11 1828 3562 6168740 6167004 0.000000e+00 2675.0
4 TraesCS3A01G027500 chr3D 91.222 843 27 9 867 1699 6169858 6169053 0.000000e+00 1103.0
5 TraesCS3A01G027500 chr3D 85.122 820 81 19 45 845 6172372 6171575 0.000000e+00 800.0
6 TraesCS3A01G027500 chr3D 81.560 949 130 28 2179 3092 6141705 6142643 0.000000e+00 741.0
7 TraesCS3A01G027500 chr3D 90.970 299 24 3 3578 3875 516957419 516957123 2.290000e-107 399.0
8 TraesCS3A01G027500 chr3D 88.994 318 31 4 3566 3882 124386771 124387085 1.380000e-104 390.0
9 TraesCS3A01G027500 chr3D 87.654 243 9 6 3875 4096 6167013 6166771 3.140000e-66 263.0
10 TraesCS3A01G027500 chr3D 79.245 212 30 9 649 851 338882864 338883070 7.140000e-28 135.0
11 TraesCS3A01G027500 chr3D 100.000 31 0 0 674 704 8532887 8532857 1.590000e-04 58.4
12 TraesCS3A01G027500 chr3B 90.405 1334 81 27 849 2163 681570679 681569374 0.000000e+00 1711.0
13 TraesCS3A01G027500 chr3B 97.094 929 24 2 2326 3251 681569379 681568451 0.000000e+00 1563.0
14 TraesCS3A01G027500 chr3B 81.130 938 141 25 2179 3092 7383435 7382510 0.000000e+00 719.0
15 TraesCS3A01G027500 chr3B 95.495 222 10 0 3338 3559 681568408 681568187 5.040000e-94 355.0
16 TraesCS3A01G027500 chr3B 75.879 597 109 28 2425 2996 8494296 8494882 5.220000e-69 272.0
17 TraesCS3A01G027500 chr3B 95.745 94 4 0 3951 4044 681568135 681568042 7.090000e-33 152.0
18 TraesCS3A01G027500 chr3B 79.902 204 25 10 649 840 666473221 666473420 7.140000e-28 135.0
19 TraesCS3A01G027500 chr3B 100.000 51 0 0 3260 3310 681568459 681568409 1.210000e-15 95.3
20 TraesCS3A01G027500 chr5A 92.424 330 22 2 3547 3876 224693140 224693466 6.200000e-128 468.0
21 TraesCS3A01G027500 chr5A 94.545 55 3 0 649 703 571686203 571686149 7.290000e-13 86.1
22 TraesCS3A01G027500 chr5A 97.727 44 1 0 3912 3955 115029410 115029453 4.390000e-10 76.8
23 TraesCS3A01G027500 chr4A 92.926 311 19 2 3566 3875 407269914 407270222 2.250000e-122 449.0
24 TraesCS3A01G027500 chr7D 89.458 332 29 5 3547 3875 578791796 578792124 8.190000e-112 414.0
25 TraesCS3A01G027500 chr7D 93.182 44 3 0 660 703 616006944 616006987 9.500000e-07 65.8
26 TraesCS3A01G027500 chr6A 88.288 333 31 5 3547 3875 383079877 383080205 3.840000e-105 392.0
27 TraesCS3A01G027500 chr6A 88.462 52 6 0 673 724 593817586 593817535 3.420000e-06 63.9
28 TraesCS3A01G027500 chr7A 89.423 312 29 4 3566 3876 716345440 716345748 1.380000e-104 390.0
29 TraesCS3A01G027500 chr4D 89.389 311 27 5 3567 3876 480466843 480467148 1.790000e-103 387.0
30 TraesCS3A01G027500 chr2B 89.389 311 27 5 3566 3875 228960659 228960354 1.790000e-103 387.0
31 TraesCS3A01G027500 chr2B 95.455 44 2 0 3912 3955 274029570 274029613 2.040000e-08 71.3
32 TraesCS3A01G027500 chr2B 95.455 44 2 0 3912 3955 514342240 514342197 2.040000e-08 71.3
33 TraesCS3A01G027500 chr5B 82.659 173 21 6 652 816 406382230 406382059 1.190000e-30 145.0
34 TraesCS3A01G027500 chr5B 87.850 107 13 0 649 755 608213758 608213864 4.300000e-25 126.0
35 TraesCS3A01G027500 chr5B 97.619 42 1 0 3912 3953 609264817 609264776 5.680000e-09 73.1
36 TraesCS3A01G027500 chr6B 80.000 210 28 11 649 844 227714581 227714372 4.270000e-30 143.0
37 TraesCS3A01G027500 chr6B 88.372 86 9 1 650 734 712467629 712467544 7.240000e-18 102.0
38 TraesCS3A01G027500 chr7B 82.317 164 16 8 649 802 110693370 110693210 3.320000e-26 130.0
39 TraesCS3A01G027500 chr7B 97.727 44 1 0 3912 3955 662789583 662789540 4.390000e-10 76.8
40 TraesCS3A01G027500 chr7B 95.455 44 2 0 3912 3955 342255974 342256017 2.040000e-08 71.3
41 TraesCS3A01G027500 chr7B 95.455 44 2 0 3912 3955 442094277 442094234 2.040000e-08 71.3
42 TraesCS3A01G027500 chr7B 95.455 44 2 0 3912 3955 671870415 671870458 2.040000e-08 71.3
43 TraesCS3A01G027500 chr1A 77.209 215 29 15 649 852 313752483 313752278 1.560000e-19 108.0
44 TraesCS3A01G027500 chr6D 97.727 44 1 0 3912 3955 363059706 363059663 4.390000e-10 76.8
45 TraesCS3A01G027500 chr4B 89.655 58 6 0 649 706 338433520 338433463 1.580000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G027500 chr3A 14763606 14767701 4095 False 7564.00 7564 100.00000 1 4096 1 chr3A.!!$F1 4095
1 TraesCS3A01G027500 chr3A 13405179 13406409 1230 True 325.50 399 79.17850 1843 3092 2 chr3A.!!$R1 1249
2 TraesCS3A01G027500 chr3D 6166771 6172372 5601 True 1210.25 2675 89.62575 45 4096 4 chr3D.!!$R3 4051
3 TraesCS3A01G027500 chr3D 6141705 6142643 938 False 741.00 741 81.56000 2179 3092 1 chr3D.!!$F1 913
4 TraesCS3A01G027500 chr3B 681568042 681570679 2637 True 775.26 1711 95.74780 849 4044 5 chr3B.!!$R2 3195
5 TraesCS3A01G027500 chr3B 7382510 7383435 925 True 719.00 719 81.13000 2179 3092 1 chr3B.!!$R1 913
6 TraesCS3A01G027500 chr3B 8494296 8494882 586 False 272.00 272 75.87900 2425 2996 1 chr3B.!!$F1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 822 0.394352 AACATCAGGTCCGGAATGCC 60.394 55.0 5.23 2.84 0.00 4.40 F
1281 3014 0.177141 TTTCCCCGATTCGAAGCGAT 59.823 50.0 34.78 2.42 40.84 4.58 F
1583 3317 0.335361 AGGAAGAAGGCTAGGGTCGA 59.665 55.0 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2356 4300 0.035598 TACCGCTGCTGCCAACTTTA 59.964 50.000 10.24 0.0 35.36 1.85 R
2833 4852 3.945285 GTCAACCACAAGAAGAAAGACCA 59.055 43.478 0.00 0.0 0.00 4.02 R
3314 5352 1.682451 GGCCGGGCTACACACATCTA 61.682 60.000 22.87 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.796110 ATGCCACTCCTTACAACCATAT 57.204 40.909 0.00 0.00 0.00 1.78
22 23 5.904984 ATGCCACTCCTTACAACCATATA 57.095 39.130 0.00 0.00 0.00 0.86
23 24 5.702065 TGCCACTCCTTACAACCATATAA 57.298 39.130 0.00 0.00 0.00 0.98
24 25 6.260700 TGCCACTCCTTACAACCATATAAT 57.739 37.500 0.00 0.00 0.00 1.28
25 26 6.061441 TGCCACTCCTTACAACCATATAATG 58.939 40.000 0.00 0.00 0.00 1.90
26 27 5.048713 GCCACTCCTTACAACCATATAATGC 60.049 44.000 0.00 0.00 0.00 3.56
27 28 6.299141 CCACTCCTTACAACCATATAATGCT 58.701 40.000 0.00 0.00 0.00 3.79
28 29 6.428159 CCACTCCTTACAACCATATAATGCTC 59.572 42.308 0.00 0.00 0.00 4.26
29 30 6.992123 CACTCCTTACAACCATATAATGCTCA 59.008 38.462 0.00 0.00 0.00 4.26
30 31 7.498900 CACTCCTTACAACCATATAATGCTCAA 59.501 37.037 0.00 0.00 0.00 3.02
31 32 8.220559 ACTCCTTACAACCATATAATGCTCAAT 58.779 33.333 0.00 0.00 0.00 2.57
32 33 8.621532 TCCTTACAACCATATAATGCTCAATC 57.378 34.615 0.00 0.00 0.00 2.67
33 34 7.665559 TCCTTACAACCATATAATGCTCAATCC 59.334 37.037 0.00 0.00 0.00 3.01
34 35 7.667219 CCTTACAACCATATAATGCTCAATCCT 59.333 37.037 0.00 0.00 0.00 3.24
35 36 9.725019 CTTACAACCATATAATGCTCAATCCTA 57.275 33.333 0.00 0.00 0.00 2.94
37 38 8.396272 ACAACCATATAATGCTCAATCCTAAC 57.604 34.615 0.00 0.00 0.00 2.34
38 39 7.998383 ACAACCATATAATGCTCAATCCTAACA 59.002 33.333 0.00 0.00 0.00 2.41
39 40 7.986085 ACCATATAATGCTCAATCCTAACAC 57.014 36.000 0.00 0.00 0.00 3.32
40 41 7.517320 ACCATATAATGCTCAATCCTAACACA 58.483 34.615 0.00 0.00 0.00 3.72
41 42 7.445402 ACCATATAATGCTCAATCCTAACACAC 59.555 37.037 0.00 0.00 0.00 3.82
42 43 7.445096 CCATATAATGCTCAATCCTAACACACA 59.555 37.037 0.00 0.00 0.00 3.72
43 44 6.683974 ATAATGCTCAATCCTAACACACAC 57.316 37.500 0.00 0.00 0.00 3.82
55 56 4.572795 CCTAACACACACACACACACATAA 59.427 41.667 0.00 0.00 0.00 1.90
60 61 4.273235 CACACACACACACACATAATCACT 59.727 41.667 0.00 0.00 0.00 3.41
77 78 2.037772 TCACTCTTGAGGCCTTGAGTTC 59.962 50.000 24.90 7.27 37.64 3.01
80 81 0.401738 CTTGAGGCCTTGAGTTCCCA 59.598 55.000 6.77 0.00 0.00 4.37
117 118 1.170442 CACCTTCCCGGCGTTTTTAT 58.830 50.000 6.01 0.00 35.61 1.40
124 125 2.885894 TCCCGGCGTTTTTATCAACTTT 59.114 40.909 6.01 0.00 0.00 2.66
129 130 4.920927 CGGCGTTTTTATCAACTTTTCCAT 59.079 37.500 0.00 0.00 0.00 3.41
196 197 6.267817 CAACCACATAGGCATAAAACTCATG 58.732 40.000 0.00 0.00 43.14 3.07
214 215 3.686241 TCATGTGAATCTCTTTCGCCTTG 59.314 43.478 0.00 0.00 42.96 3.61
263 264 2.853235 CCCCCAGTAACGGAATATCC 57.147 55.000 0.00 0.00 0.00 2.59
264 265 2.051692 CCCCCAGTAACGGAATATCCA 58.948 52.381 0.00 0.00 35.91 3.41
265 266 2.440253 CCCCCAGTAACGGAATATCCAA 59.560 50.000 0.00 0.00 35.91 3.53
266 267 3.496160 CCCCCAGTAACGGAATATCCAAG 60.496 52.174 0.00 0.00 35.91 3.61
267 268 3.496160 CCCCAGTAACGGAATATCCAAGG 60.496 52.174 0.00 0.00 35.91 3.61
268 269 3.135895 CCCAGTAACGGAATATCCAAGGT 59.864 47.826 0.00 0.00 35.91 3.50
269 270 4.377897 CCAGTAACGGAATATCCAAGGTC 58.622 47.826 0.00 0.00 35.91 3.85
270 271 4.377897 CAGTAACGGAATATCCAAGGTCC 58.622 47.826 0.00 0.00 35.91 4.46
271 272 4.101119 CAGTAACGGAATATCCAAGGTCCT 59.899 45.833 0.00 0.00 35.91 3.85
272 273 4.720273 AGTAACGGAATATCCAAGGTCCTT 59.280 41.667 0.00 0.00 35.91 3.36
273 274 3.560636 ACGGAATATCCAAGGTCCTTG 57.439 47.619 22.89 22.89 40.75 3.61
290 291 2.484417 CCTTGGTTCATGATCCTCTCCG 60.484 54.545 20.87 7.18 0.00 4.63
306 307 3.474600 TCTCCGAATCTCCTAAGTACGG 58.525 50.000 0.00 0.00 40.16 4.02
314 315 1.476891 CTCCTAAGTACGGAGCTTGCA 59.523 52.381 2.78 0.00 41.39 4.08
324 325 0.675633 GGAGCTTGCACCACAAACAT 59.324 50.000 4.26 0.00 37.96 2.71
327 328 3.056607 GGAGCTTGCACCACAAACATATT 60.057 43.478 4.26 0.00 37.96 1.28
343 344 1.982660 TATTTGCACCCAACAACCGA 58.017 45.000 0.00 0.00 0.00 4.69
360 361 1.677552 GAAAGCGGACTTCCTGGGA 59.322 57.895 0.00 0.00 34.05 4.37
403 408 8.415950 TGCCCTTATTTGATCTTTGAAACTTA 57.584 30.769 0.00 0.00 0.00 2.24
407 412 9.912634 CCTTATTTGATCTTTGAAACTTAAGCA 57.087 29.630 1.29 0.00 0.00 3.91
464 469 2.423577 TGCGGGAAGAGAAACTTTAGC 58.576 47.619 0.00 0.00 39.13 3.09
470 475 3.498777 GGAAGAGAAACTTTAGCGCTTGT 59.501 43.478 18.68 10.11 39.13 3.16
471 476 4.023963 GGAAGAGAAACTTTAGCGCTTGTT 60.024 41.667 18.68 15.92 39.13 2.83
495 500 2.102252 GGTGTGGTTGAGGCATTTTTCA 59.898 45.455 0.00 0.00 0.00 2.69
499 504 2.971330 TGGTTGAGGCATTTTTCACCAT 59.029 40.909 0.00 0.00 0.00 3.55
500 505 3.244146 TGGTTGAGGCATTTTTCACCATG 60.244 43.478 0.00 0.00 0.00 3.66
508 513 4.937015 GGCATTTTTCACCATGTGCTTATT 59.063 37.500 0.00 0.00 32.98 1.40
530 535 2.546373 GCAACACACATGCATTGTCCTT 60.546 45.455 0.00 0.00 43.29 3.36
533 538 2.294233 ACACACATGCATTGTCCTTGTC 59.706 45.455 0.00 0.00 36.00 3.18
534 539 1.888512 ACACATGCATTGTCCTTGTCC 59.111 47.619 0.00 0.00 36.00 4.02
536 541 3.244875 ACACATGCATTGTCCTTGTCCTA 60.245 43.478 0.00 0.00 36.00 2.94
537 542 3.376234 CACATGCATTGTCCTTGTCCTAG 59.624 47.826 0.00 0.00 36.00 3.02
540 545 4.471904 TGCATTGTCCTTGTCCTAGTAG 57.528 45.455 0.00 0.00 0.00 2.57
541 546 3.838317 TGCATTGTCCTTGTCCTAGTAGT 59.162 43.478 0.00 0.00 0.00 2.73
548 553 9.656323 ATTGTCCTTGTCCTAGTAGTAATATCA 57.344 33.333 0.00 0.00 0.00 2.15
550 555 8.280084 TGTCCTTGTCCTAGTAGTAATATCACT 58.720 37.037 0.00 0.00 0.00 3.41
553 558 9.303116 CCTTGTCCTAGTAGTAATATCACTGAT 57.697 37.037 0.00 0.00 0.00 2.90
582 587 3.409570 AGAAAAACCTCCCGCTAAACTC 58.590 45.455 0.00 0.00 0.00 3.01
585 590 1.190178 AACCTCCCGCTAAACTCGGT 61.190 55.000 0.66 0.00 45.09 4.69
586 591 1.141234 CCTCCCGCTAAACTCGGTC 59.859 63.158 0.66 0.00 45.09 4.79
588 593 1.304713 TCCCGCTAAACTCGGTCCT 60.305 57.895 0.66 0.00 45.09 3.85
589 594 0.901580 TCCCGCTAAACTCGGTCCTT 60.902 55.000 0.66 0.00 45.09 3.36
615 623 1.886542 AGGCCAAAGCTAAAACCGAAG 59.113 47.619 5.01 0.00 39.73 3.79
619 627 4.364860 GCCAAAGCTAAAACCGAAGAAAA 58.635 39.130 0.00 0.00 35.50 2.29
649 658 6.618287 TGTATCTGTTGGACAAAAGAGTTG 57.382 37.500 10.42 0.00 38.01 3.16
690 699 9.658475 TTTTTATGACAAATTTAGTGACGTGAG 57.342 29.630 0.00 0.00 0.00 3.51
699 708 2.440539 AGTGACGTGAGGATGACAAC 57.559 50.000 0.00 0.00 0.00 3.32
729 738 2.538449 TCGAGCACGACAACTTCTTTTC 59.462 45.455 0.88 0.00 43.81 2.29
736 745 2.412847 CGACAACTTCTTTTCGGATGGC 60.413 50.000 0.00 0.00 0.00 4.40
739 748 3.004734 ACAACTTCTTTTCGGATGGCAAG 59.995 43.478 0.00 0.00 0.00 4.01
744 760 5.300792 ACTTCTTTTCGGATGGCAAGTTTTA 59.699 36.000 0.00 0.00 0.00 1.52
747 763 6.754193 TCTTTTCGGATGGCAAGTTTTATTT 58.246 32.000 0.00 0.00 0.00 1.40
748 764 7.213678 TCTTTTCGGATGGCAAGTTTTATTTT 58.786 30.769 0.00 0.00 0.00 1.82
798 814 6.489022 ACCTTAGTTGTAAAAACATCAGGTCC 59.511 38.462 0.00 0.00 0.00 4.46
802 818 4.088056 TGTAAAAACATCAGGTCCGGAA 57.912 40.909 5.23 0.00 0.00 4.30
806 822 0.394352 AACATCAGGTCCGGAATGCC 60.394 55.000 5.23 2.84 0.00 4.40
816 832 2.045926 GGAATGCCTCGTGCCACT 60.046 61.111 0.00 0.00 40.16 4.00
817 833 2.401766 GGAATGCCTCGTGCCACTG 61.402 63.158 0.00 0.00 40.16 3.66
845 865 5.858049 CGTGTGACACTTATCGTTTAGGTAA 59.142 40.000 14.42 0.00 31.34 2.85
846 866 6.363088 CGTGTGACACTTATCGTTTAGGTAAA 59.637 38.462 14.42 0.00 31.34 2.01
881 2598 1.944177 AGCTGCCTAAGGAGAAGACA 58.056 50.000 0.00 0.00 0.00 3.41
896 2613 5.199024 AGAAGACAGATCATTCTCCATCG 57.801 43.478 0.00 0.00 0.00 3.84
908 2625 1.002366 CTCCATCGAGAAACCGCTTG 58.998 55.000 0.00 0.00 38.52 4.01
912 2629 2.333926 CATCGAGAAACCGCTTGTACA 58.666 47.619 0.00 0.00 0.00 2.90
1014 2731 1.133699 TCCATCATGGCCAAGGTGATC 60.134 52.381 22.67 0.00 37.47 2.92
1037 2754 2.478709 CCTCGGACACATTTCTCTCTCG 60.479 54.545 0.00 0.00 0.00 4.04
1090 2816 2.739704 CGATTCACCGCGTGCACAT 61.740 57.895 18.64 0.00 32.98 3.21
1103 2829 1.474077 GTGCACATCTGAATGGGGTTC 59.526 52.381 13.17 0.00 36.75 3.62
1281 3014 0.177141 TTTCCCCGATTCGAAGCGAT 59.823 50.000 34.78 2.42 40.84 4.58
1293 3026 4.159377 TCGAAGCGATTTTGCAAATTCT 57.841 36.364 24.11 11.50 37.31 2.40
1342 3076 1.611491 GATTTGGGTTTGCCGACTGAA 59.389 47.619 0.00 0.00 34.97 3.02
1354 3088 0.790207 CGACTGAACATTCCGGTGTG 59.210 55.000 0.00 4.13 31.49 3.82
1355 3089 1.604438 CGACTGAACATTCCGGTGTGA 60.604 52.381 14.24 0.00 31.49 3.58
1357 3091 3.074412 GACTGAACATTCCGGTGTGATT 58.926 45.455 14.24 6.23 31.49 2.57
1358 3092 2.813754 ACTGAACATTCCGGTGTGATTG 59.186 45.455 14.24 0.00 31.49 2.67
1359 3093 2.813754 CTGAACATTCCGGTGTGATTGT 59.186 45.455 14.24 0.00 31.96 2.71
1360 3094 2.811431 TGAACATTCCGGTGTGATTGTC 59.189 45.455 14.24 2.21 30.71 3.18
1362 3096 1.351017 ACATTCCGGTGTGATTGTCCT 59.649 47.619 14.24 0.00 0.00 3.85
1363 3097 1.739466 CATTCCGGTGTGATTGTCCTG 59.261 52.381 0.00 0.00 0.00 3.86
1364 3098 0.762418 TTCCGGTGTGATTGTCCTGT 59.238 50.000 0.00 0.00 0.00 4.00
1365 3099 1.634960 TCCGGTGTGATTGTCCTGTA 58.365 50.000 0.00 0.00 0.00 2.74
1366 3100 2.184533 TCCGGTGTGATTGTCCTGTAT 58.815 47.619 0.00 0.00 0.00 2.29
1367 3101 2.167693 TCCGGTGTGATTGTCCTGTATC 59.832 50.000 0.00 0.00 0.00 2.24
1368 3102 2.093711 CCGGTGTGATTGTCCTGTATCA 60.094 50.000 0.00 0.00 0.00 2.15
1369 3103 3.190079 CGGTGTGATTGTCCTGTATCAG 58.810 50.000 0.00 0.00 31.81 2.90
1395 3129 6.581388 ATTTGGATATGGACCTCTGAAGAA 57.419 37.500 0.00 0.00 0.00 2.52
1577 3311 1.138661 CTGCTCCAGGAAGAAGGCTAG 59.861 57.143 0.00 0.00 0.00 3.42
1583 3317 0.335361 AGGAAGAAGGCTAGGGTCGA 59.665 55.000 0.00 0.00 0.00 4.20
1731 3522 5.573337 ACTCGGCGAACTAGTATTAAGTT 57.427 39.130 12.13 0.00 39.84 2.66
1739 3530 7.120285 GGCGAACTAGTATTAAGTTTTCCCTTT 59.880 37.037 0.00 0.00 37.31 3.11
1796 3589 6.883744 TCTTTTCACCCTGCAATTTAGTTTT 58.116 32.000 0.00 0.00 0.00 2.43
1803 3596 6.200097 CACCCTGCAATTTAGTTTTGTGTTAC 59.800 38.462 0.00 0.00 0.00 2.50
1956 3881 4.749245 TTTTCCTTCGTCTCATTTCAGC 57.251 40.909 0.00 0.00 0.00 4.26
1975 3900 4.539870 CAGCACAACTGGTTGAATGTTAG 58.460 43.478 18.63 2.87 43.19 2.34
1976 3901 4.036734 CAGCACAACTGGTTGAATGTTAGT 59.963 41.667 18.63 0.00 43.19 2.24
1977 3902 5.238432 CAGCACAACTGGTTGAATGTTAGTA 59.762 40.000 18.63 0.00 43.19 1.82
1978 3903 6.003950 AGCACAACTGGTTGAATGTTAGTAT 58.996 36.000 18.63 0.00 42.93 2.12
2076 4005 8.466617 TTGCATTTAGGTAAACTAAGTTTCCA 57.533 30.769 0.00 0.00 42.34 3.53
2186 4115 0.747283 GGCAGCATCAACTCTCTGGG 60.747 60.000 0.00 0.00 0.00 4.45
2188 4117 1.735386 CAGCATCAACTCTCTGGGTG 58.265 55.000 0.00 0.00 0.00 4.61
2226 4155 5.296035 AGGTTCAACAAACTGTTACTAGCAC 59.704 40.000 0.00 0.00 38.77 4.40
2236 4165 6.408858 ACTGTTACTAGCACGAAAATCATG 57.591 37.500 0.00 0.00 0.00 3.07
2245 4174 6.624352 AGCACGAAAATCATGTATATGCTT 57.376 33.333 0.00 0.00 37.62 3.91
2356 4300 7.050970 TCAAAATCACCGTAGATAGTAGCAT 57.949 36.000 0.00 0.00 0.00 3.79
2413 4378 0.590195 CTTGTGCACTCCTGCTGTTC 59.410 55.000 19.41 0.00 44.57 3.18
2497 4501 0.667993 GAGTGCTCCTCCGATCTGAG 59.332 60.000 7.15 7.15 33.79 3.35
2702 4721 4.675303 TGCTGCCCCTACCCTGGT 62.675 66.667 0.00 0.00 0.00 4.00
2833 4852 1.689233 TATCCCTCGGCAGCAAGGT 60.689 57.895 11.20 0.00 0.00 3.50
3042 5073 2.172659 CGTCGCTGTTCGTCTCGA 59.827 61.111 0.00 0.00 39.67 4.04
3314 5352 4.090761 TCTTGGAGAGTGCAGATTTGTT 57.909 40.909 0.00 0.00 0.00 2.83
3321 5359 5.064452 GGAGAGTGCAGATTTGTTAGATGTG 59.936 44.000 0.00 0.00 0.00 3.21
3333 5371 1.682451 TAGATGTGTGTAGCCCGGCC 61.682 60.000 5.55 0.00 0.00 6.13
3347 5385 1.816537 CGGCCAAGAGCTGCTACTA 59.183 57.895 0.15 0.00 42.11 1.82
3504 5542 0.731514 TCGATCCGTGAAGCGACAAC 60.732 55.000 0.00 0.00 44.77 3.32
3534 5572 5.324409 AGAGTTGCCATTTTTCATGGTAGA 58.676 37.500 2.87 0.00 41.17 2.59
3536 5574 6.267471 AGAGTTGCCATTTTTCATGGTAGAAA 59.733 34.615 2.87 0.00 41.17 2.52
3601 5639 9.813826 ATTATTAAAGGGAGGTGATATTCTTGG 57.186 33.333 0.00 0.00 0.00 3.61
3602 5640 6.652205 TTAAAGGGAGGTGATATTCTTGGT 57.348 37.500 0.00 0.00 0.00 3.67
3603 5641 5.536497 AAAGGGAGGTGATATTCTTGGTT 57.464 39.130 0.00 0.00 0.00 3.67
3604 5642 5.536497 AAGGGAGGTGATATTCTTGGTTT 57.464 39.130 0.00 0.00 0.00 3.27
3605 5643 5.117406 AGGGAGGTGATATTCTTGGTTTC 57.883 43.478 0.00 0.00 0.00 2.78
3606 5644 3.877508 GGGAGGTGATATTCTTGGTTTCG 59.122 47.826 0.00 0.00 0.00 3.46
3607 5645 4.514401 GGAGGTGATATTCTTGGTTTCGT 58.486 43.478 0.00 0.00 0.00 3.85
3608 5646 4.571176 GGAGGTGATATTCTTGGTTTCGTC 59.429 45.833 0.00 0.00 0.00 4.20
3609 5647 4.514401 AGGTGATATTCTTGGTTTCGTCC 58.486 43.478 0.00 0.00 0.00 4.79
3610 5648 4.225267 AGGTGATATTCTTGGTTTCGTCCT 59.775 41.667 0.00 0.00 0.00 3.85
3611 5649 4.332819 GGTGATATTCTTGGTTTCGTCCTG 59.667 45.833 0.00 0.00 0.00 3.86
3612 5650 4.935808 GTGATATTCTTGGTTTCGTCCTGT 59.064 41.667 0.00 0.00 0.00 4.00
3613 5651 5.411669 GTGATATTCTTGGTTTCGTCCTGTT 59.588 40.000 0.00 0.00 0.00 3.16
3614 5652 6.001460 TGATATTCTTGGTTTCGTCCTGTTT 58.999 36.000 0.00 0.00 0.00 2.83
3615 5653 6.488683 TGATATTCTTGGTTTCGTCCTGTTTT 59.511 34.615 0.00 0.00 0.00 2.43
3616 5654 4.364415 TTCTTGGTTTCGTCCTGTTTTG 57.636 40.909 0.00 0.00 0.00 2.44
3617 5655 3.349022 TCTTGGTTTCGTCCTGTTTTGT 58.651 40.909 0.00 0.00 0.00 2.83
3618 5656 3.759618 TCTTGGTTTCGTCCTGTTTTGTT 59.240 39.130 0.00 0.00 0.00 2.83
3619 5657 4.218852 TCTTGGTTTCGTCCTGTTTTGTTT 59.781 37.500 0.00 0.00 0.00 2.83
3620 5658 3.839293 TGGTTTCGTCCTGTTTTGTTTG 58.161 40.909 0.00 0.00 0.00 2.93
3621 5659 3.506455 TGGTTTCGTCCTGTTTTGTTTGA 59.494 39.130 0.00 0.00 0.00 2.69
3622 5660 4.158764 TGGTTTCGTCCTGTTTTGTTTGAT 59.841 37.500 0.00 0.00 0.00 2.57
3623 5661 4.738252 GGTTTCGTCCTGTTTTGTTTGATC 59.262 41.667 0.00 0.00 0.00 2.92
3624 5662 4.561735 TTCGTCCTGTTTTGTTTGATCC 57.438 40.909 0.00 0.00 0.00 3.36
3625 5663 3.546724 TCGTCCTGTTTTGTTTGATCCA 58.453 40.909 0.00 0.00 0.00 3.41
3626 5664 3.314080 TCGTCCTGTTTTGTTTGATCCAC 59.686 43.478 0.00 0.00 0.00 4.02
3627 5665 3.315191 CGTCCTGTTTTGTTTGATCCACT 59.685 43.478 0.00 0.00 0.00 4.00
3628 5666 4.202010 CGTCCTGTTTTGTTTGATCCACTT 60.202 41.667 0.00 0.00 0.00 3.16
3629 5667 5.281727 GTCCTGTTTTGTTTGATCCACTTC 58.718 41.667 0.00 0.00 0.00 3.01
3630 5668 4.952957 TCCTGTTTTGTTTGATCCACTTCA 59.047 37.500 0.00 0.00 0.00 3.02
3631 5669 5.420421 TCCTGTTTTGTTTGATCCACTTCAA 59.580 36.000 0.00 0.00 33.89 2.69
3632 5670 6.098124 TCCTGTTTTGTTTGATCCACTTCAAT 59.902 34.615 0.00 0.00 35.64 2.57
3633 5671 6.762661 CCTGTTTTGTTTGATCCACTTCAATT 59.237 34.615 0.00 0.00 35.64 2.32
3634 5672 7.925483 CCTGTTTTGTTTGATCCACTTCAATTA 59.075 33.333 0.00 0.00 35.64 1.40
3635 5673 9.311916 CTGTTTTGTTTGATCCACTTCAATTAA 57.688 29.630 0.00 0.00 35.64 1.40
3636 5674 9.829507 TGTTTTGTTTGATCCACTTCAATTAAT 57.170 25.926 0.00 0.00 35.64 1.40
3646 5684 9.438291 GATCCACTTCAATTAATTTCATGTACG 57.562 33.333 0.00 0.00 0.00 3.67
3647 5685 7.247728 TCCACTTCAATTAATTTCATGTACGC 58.752 34.615 0.00 0.00 0.00 4.42
3648 5686 7.120579 TCCACTTCAATTAATTTCATGTACGCT 59.879 33.333 0.00 0.00 0.00 5.07
3649 5687 8.394877 CCACTTCAATTAATTTCATGTACGCTA 58.605 33.333 0.00 0.00 0.00 4.26
3650 5688 9.935682 CACTTCAATTAATTTCATGTACGCTAT 57.064 29.630 0.00 0.00 0.00 2.97
3654 5692 9.729023 TCAATTAATTTCATGTACGCTATTTGG 57.271 29.630 0.00 0.00 0.00 3.28
3655 5693 9.515020 CAATTAATTTCATGTACGCTATTTGGT 57.485 29.630 0.00 0.00 0.00 3.67
3658 5696 9.562583 TTAATTTCATGTACGCTATTTGGTTTC 57.437 29.630 0.00 0.00 0.00 2.78
3659 5697 4.850859 TCATGTACGCTATTTGGTTTCG 57.149 40.909 0.00 0.00 0.00 3.46
3660 5698 4.247258 TCATGTACGCTATTTGGTTTCGT 58.753 39.130 0.00 0.00 37.19 3.85
3661 5699 4.691685 TCATGTACGCTATTTGGTTTCGTT 59.308 37.500 0.00 0.00 34.97 3.85
3662 5700 5.868258 TCATGTACGCTATTTGGTTTCGTTA 59.132 36.000 0.00 0.00 34.97 3.18
3663 5701 5.514059 TGTACGCTATTTGGTTTCGTTAC 57.486 39.130 0.00 0.00 34.97 2.50
3664 5702 4.987285 TGTACGCTATTTGGTTTCGTTACA 59.013 37.500 0.00 0.00 34.97 2.41
3665 5703 5.638657 TGTACGCTATTTGGTTTCGTTACAT 59.361 36.000 0.00 0.00 34.97 2.29
3666 5704 4.965062 ACGCTATTTGGTTTCGTTACATG 58.035 39.130 0.00 0.00 0.00 3.21
3667 5705 3.783943 CGCTATTTGGTTTCGTTACATGC 59.216 43.478 0.00 0.00 0.00 4.06
3668 5706 4.102649 GCTATTTGGTTTCGTTACATGCC 58.897 43.478 0.00 0.00 0.00 4.40
3669 5707 4.380023 GCTATTTGGTTTCGTTACATGCCA 60.380 41.667 0.00 0.00 0.00 4.92
3670 5708 3.357166 TTTGGTTTCGTTACATGCCAC 57.643 42.857 0.00 0.00 0.00 5.01
3671 5709 1.240256 TGGTTTCGTTACATGCCACC 58.760 50.000 0.00 0.00 0.00 4.61
3672 5710 0.524414 GGTTTCGTTACATGCCACCC 59.476 55.000 0.00 0.00 0.00 4.61
3673 5711 0.167251 GTTTCGTTACATGCCACCCG 59.833 55.000 0.00 0.00 0.00 5.28
3674 5712 0.250381 TTTCGTTACATGCCACCCGT 60.250 50.000 0.00 0.00 0.00 5.28
3675 5713 0.250381 TTCGTTACATGCCACCCGTT 60.250 50.000 0.00 0.00 0.00 4.44
3676 5714 0.250381 TCGTTACATGCCACCCGTTT 60.250 50.000 0.00 0.00 0.00 3.60
3677 5715 0.594110 CGTTACATGCCACCCGTTTT 59.406 50.000 0.00 0.00 0.00 2.43
3678 5716 1.664588 CGTTACATGCCACCCGTTTTG 60.665 52.381 0.00 0.00 0.00 2.44
3679 5717 0.962489 TTACATGCCACCCGTTTTGG 59.038 50.000 0.00 0.00 37.17 3.28
3684 5722 2.840102 CCACCCGTTTTGGCCCAA 60.840 61.111 0.00 0.00 35.87 4.12
3685 5723 2.419620 CACCCGTTTTGGCCCAAC 59.580 61.111 0.00 2.02 35.87 3.77
3686 5724 3.220658 ACCCGTTTTGGCCCAACG 61.221 61.111 23.94 23.94 45.35 4.10
3689 5727 2.642700 CGTTTTGGCCCAACGGAG 59.357 61.111 23.41 2.60 42.68 4.63
3690 5728 2.914908 CGTTTTGGCCCAACGGAGG 61.915 63.158 23.41 2.30 42.68 4.30
3691 5729 1.529713 GTTTTGGCCCAACGGAGGA 60.530 57.895 0.00 0.00 0.00 3.71
3692 5730 1.110518 GTTTTGGCCCAACGGAGGAA 61.111 55.000 0.00 0.00 0.00 3.36
3693 5731 0.825840 TTTTGGCCCAACGGAGGAAG 60.826 55.000 0.00 0.00 0.00 3.46
3694 5732 3.860930 TTGGCCCAACGGAGGAAGC 62.861 63.158 0.00 0.00 0.00 3.86
3697 5735 3.646715 CCCAACGGAGGAAGCCCA 61.647 66.667 0.00 0.00 33.88 5.36
3698 5736 2.359975 CCAACGGAGGAAGCCCAC 60.360 66.667 0.00 0.00 33.88 4.61
3699 5737 2.359975 CAACGGAGGAAGCCCACC 60.360 66.667 0.00 0.00 39.52 4.61
3700 5738 2.529389 AACGGAGGAAGCCCACCT 60.529 61.111 0.00 0.00 40.59 4.00
3701 5739 2.895424 AACGGAGGAAGCCCACCTG 61.895 63.158 0.00 0.00 40.59 4.00
3702 5740 3.003173 CGGAGGAAGCCCACCTGA 61.003 66.667 0.00 0.00 40.59 3.86
3703 5741 2.671682 GGAGGAAGCCCACCTGAC 59.328 66.667 0.00 0.00 39.75 3.51
3704 5742 2.266055 GAGGAAGCCCACCTGACG 59.734 66.667 0.00 0.00 37.93 4.35
3705 5743 3.316573 GAGGAAGCCCACCTGACGG 62.317 68.421 0.00 0.00 37.93 4.79
3711 5749 3.941188 CCCACCTGACGGCACACT 61.941 66.667 0.00 0.00 0.00 3.55
3712 5750 2.666190 CCACCTGACGGCACACTG 60.666 66.667 0.00 0.00 0.00 3.66
3713 5751 2.108976 CACCTGACGGCACACTGT 59.891 61.111 0.00 0.00 38.42 3.55
3714 5752 2.108976 ACCTGACGGCACACTGTG 59.891 61.111 6.19 6.19 34.75 3.66
3715 5753 2.666190 CCTGACGGCACACTGTGG 60.666 66.667 13.09 2.45 34.75 4.17
3723 5761 2.972505 CACACTGTGGCCCACGTC 60.973 66.667 9.78 0.00 37.14 4.34
3724 5762 4.250305 ACACTGTGGCCCACGTCC 62.250 66.667 9.78 0.00 37.14 4.79
3733 5771 4.135153 CCCACGTCCGGAGAGCTG 62.135 72.222 3.06 3.65 0.00 4.24
3734 5772 4.135153 CCACGTCCGGAGAGCTGG 62.135 72.222 3.06 8.99 42.30 4.85
3735 5773 4.803426 CACGTCCGGAGAGCTGGC 62.803 72.222 3.06 0.00 40.61 4.85
3737 5775 4.069232 CGTCCGGAGAGCTGGCAA 62.069 66.667 3.06 0.00 40.61 4.52
3738 5776 2.347490 GTCCGGAGAGCTGGCAAA 59.653 61.111 3.06 0.00 40.61 3.68
3739 5777 2.035442 GTCCGGAGAGCTGGCAAAC 61.035 63.158 3.06 0.00 40.61 2.93
3740 5778 2.032528 CCGGAGAGCTGGCAAACA 59.967 61.111 0.00 0.00 32.79 2.83
3741 5779 1.600636 CCGGAGAGCTGGCAAACAA 60.601 57.895 0.00 0.00 32.79 2.83
3742 5780 1.172180 CCGGAGAGCTGGCAAACAAA 61.172 55.000 0.00 0.00 32.79 2.83
3743 5781 0.667993 CGGAGAGCTGGCAAACAAAA 59.332 50.000 0.00 0.00 0.00 2.44
3744 5782 1.066908 CGGAGAGCTGGCAAACAAAAA 59.933 47.619 0.00 0.00 0.00 1.94
3763 5801 2.364972 AAAAATAGCCGATGGGAGGG 57.635 50.000 0.00 0.00 34.06 4.30
3769 5807 2.919856 CCGATGGGAGGGCTCGAT 60.920 66.667 0.00 0.00 34.41 3.59
3770 5808 2.653702 CGATGGGAGGGCTCGATC 59.346 66.667 0.00 0.00 34.41 3.69
3771 5809 1.905843 CGATGGGAGGGCTCGATCT 60.906 63.158 0.00 0.00 34.41 2.75
3772 5810 1.872197 CGATGGGAGGGCTCGATCTC 61.872 65.000 0.00 0.00 34.41 2.75
3773 5811 0.829602 GATGGGAGGGCTCGATCTCA 60.830 60.000 11.08 1.49 0.00 3.27
3774 5812 0.178909 ATGGGAGGGCTCGATCTCAT 60.179 55.000 11.08 3.65 31.65 2.90
3775 5813 0.482887 TGGGAGGGCTCGATCTCATA 59.517 55.000 11.08 0.03 0.00 2.15
3776 5814 1.133167 TGGGAGGGCTCGATCTCATAA 60.133 52.381 11.08 0.00 0.00 1.90
3777 5815 1.273886 GGGAGGGCTCGATCTCATAAC 59.726 57.143 11.08 0.00 0.00 1.89
3778 5816 1.273886 GGAGGGCTCGATCTCATAACC 59.726 57.143 11.08 0.00 0.00 2.85
3779 5817 1.273886 GAGGGCTCGATCTCATAACCC 59.726 57.143 0.00 0.00 36.04 4.11
3780 5818 0.038159 GGGCTCGATCTCATAACCCG 60.038 60.000 0.00 0.00 0.00 5.28
3781 5819 0.667792 GGCTCGATCTCATAACCCGC 60.668 60.000 0.00 0.00 0.00 6.13
3782 5820 0.667792 GCTCGATCTCATAACCCGCC 60.668 60.000 0.00 0.00 0.00 6.13
3783 5821 0.673985 CTCGATCTCATAACCCGCCA 59.326 55.000 0.00 0.00 0.00 5.69
3784 5822 1.068588 CTCGATCTCATAACCCGCCAA 59.931 52.381 0.00 0.00 0.00 4.52
3785 5823 1.202486 TCGATCTCATAACCCGCCAAC 60.202 52.381 0.00 0.00 0.00 3.77
3786 5824 1.594331 GATCTCATAACCCGCCAACC 58.406 55.000 0.00 0.00 0.00 3.77
3787 5825 0.179056 ATCTCATAACCCGCCAACCG 60.179 55.000 0.00 0.00 0.00 4.44
3798 5836 3.286751 CCAACCGGCCACACACAG 61.287 66.667 0.00 0.00 0.00 3.66
3799 5837 2.515991 CAACCGGCCACACACAGT 60.516 61.111 0.00 0.00 0.00 3.55
3800 5838 2.118404 CAACCGGCCACACACAGTT 61.118 57.895 0.00 0.00 0.00 3.16
3801 5839 1.379309 AACCGGCCACACACAGTTT 60.379 52.632 0.00 0.00 0.00 2.66
3802 5840 1.662438 AACCGGCCACACACAGTTTG 61.662 55.000 0.00 0.00 0.00 2.93
3803 5841 2.118404 CCGGCCACACACAGTTTGT 61.118 57.895 2.24 0.00 39.97 2.83
3804 5842 1.355210 CGGCCACACACAGTTTGTC 59.645 57.895 2.24 0.00 35.67 3.18
3805 5843 1.733526 GGCCACACACAGTTTGTCC 59.266 57.895 0.00 0.00 35.67 4.02
3806 5844 1.034838 GGCCACACACAGTTTGTCCA 61.035 55.000 0.00 0.00 35.67 4.02
3807 5845 0.814457 GCCACACACAGTTTGTCCAA 59.186 50.000 0.00 0.00 35.67 3.53
3808 5846 1.469079 GCCACACACAGTTTGTCCAAC 60.469 52.381 0.00 0.00 35.67 3.77
3810 5848 3.275143 CCACACACAGTTTGTCCAACTA 58.725 45.455 0.00 0.00 44.60 2.24
3811 5849 3.692101 CCACACACAGTTTGTCCAACTAA 59.308 43.478 0.00 0.00 44.60 2.24
3812 5850 4.438200 CCACACACAGTTTGTCCAACTAAC 60.438 45.833 0.00 0.00 44.60 2.34
3813 5851 3.692593 ACACACAGTTTGTCCAACTAACC 59.307 43.478 1.69 0.00 44.60 2.85
3814 5852 3.066203 CACACAGTTTGTCCAACTAACCC 59.934 47.826 1.69 0.00 44.60 4.11
3815 5853 3.283751 CACAGTTTGTCCAACTAACCCA 58.716 45.455 1.69 0.00 44.60 4.51
3816 5854 3.315191 CACAGTTTGTCCAACTAACCCAG 59.685 47.826 1.69 0.00 44.60 4.45
3817 5855 3.053917 ACAGTTTGTCCAACTAACCCAGT 60.054 43.478 1.69 0.00 44.60 4.00
3818 5856 8.941904 ACACAGTTTGTCCAACTAACCCAGTT 62.942 42.308 1.69 0.00 44.60 3.16
3819 5857 5.127491 CAGTTTGTCCAACTAACCCAGTTA 58.873 41.667 1.69 0.00 46.04 2.24
3820 5858 5.238650 CAGTTTGTCCAACTAACCCAGTTAG 59.761 44.000 11.92 11.92 46.04 2.34
3821 5859 5.131475 AGTTTGTCCAACTAACCCAGTTAGA 59.869 40.000 18.74 0.00 46.04 2.10
3822 5860 4.884668 TGTCCAACTAACCCAGTTAGAG 57.115 45.455 18.74 11.32 46.04 2.43
3823 5861 4.485875 TGTCCAACTAACCCAGTTAGAGA 58.514 43.478 18.74 10.52 46.04 3.10
3824 5862 5.091552 TGTCCAACTAACCCAGTTAGAGAT 58.908 41.667 18.74 4.56 46.04 2.75
3825 5863 6.258354 TGTCCAACTAACCCAGTTAGAGATA 58.742 40.000 18.74 9.26 46.04 1.98
3826 5864 6.901300 TGTCCAACTAACCCAGTTAGAGATAT 59.099 38.462 18.74 0.00 46.04 1.63
3827 5865 7.147724 TGTCCAACTAACCCAGTTAGAGATATG 60.148 40.741 18.74 10.05 46.04 1.78
3828 5866 7.069578 GTCCAACTAACCCAGTTAGAGATATGA 59.930 40.741 18.74 5.94 46.04 2.15
3829 5867 7.287927 TCCAACTAACCCAGTTAGAGATATGAG 59.712 40.741 18.74 0.00 46.04 2.90
3830 5868 7.287927 CCAACTAACCCAGTTAGAGATATGAGA 59.712 40.741 18.74 0.00 46.04 3.27
3831 5869 8.356657 CAACTAACCCAGTTAGAGATATGAGAG 58.643 40.741 18.74 0.00 46.04 3.20
3832 5870 7.007723 ACTAACCCAGTTAGAGATATGAGAGG 58.992 42.308 18.74 0.00 45.73 3.69
3833 5871 5.671463 ACCCAGTTAGAGATATGAGAGGA 57.329 43.478 0.00 0.00 0.00 3.71
3834 5872 6.226272 ACCCAGTTAGAGATATGAGAGGAT 57.774 41.667 0.00 0.00 0.00 3.24
3835 5873 6.629156 ACCCAGTTAGAGATATGAGAGGATT 58.371 40.000 0.00 0.00 0.00 3.01
3836 5874 7.770662 ACCCAGTTAGAGATATGAGAGGATTA 58.229 38.462 0.00 0.00 0.00 1.75
3837 5875 8.405850 ACCCAGTTAGAGATATGAGAGGATTAT 58.594 37.037 0.00 0.00 0.00 1.28
3838 5876 9.265862 CCCAGTTAGAGATATGAGAGGATTATT 57.734 37.037 0.00 0.00 0.00 1.40
3846 5884 9.665719 GAGATATGAGAGGATTATTTTTCTCCC 57.334 37.037 0.00 0.00 36.17 4.30
3847 5885 8.317679 AGATATGAGAGGATTATTTTTCTCCCG 58.682 37.037 0.00 0.00 36.17 5.14
3848 5886 5.693769 TGAGAGGATTATTTTTCTCCCGT 57.306 39.130 0.00 0.00 36.17 5.28
3849 5887 6.062258 TGAGAGGATTATTTTTCTCCCGTT 57.938 37.500 0.00 0.00 36.17 4.44
3850 5888 5.880332 TGAGAGGATTATTTTTCTCCCGTTG 59.120 40.000 0.00 0.00 36.17 4.10
3851 5889 4.640647 AGAGGATTATTTTTCTCCCGTTGC 59.359 41.667 0.00 0.00 0.00 4.17
3852 5890 4.340617 AGGATTATTTTTCTCCCGTTGCA 58.659 39.130 0.00 0.00 0.00 4.08
3853 5891 4.770010 AGGATTATTTTTCTCCCGTTGCAA 59.230 37.500 0.00 0.00 0.00 4.08
3854 5892 4.862574 GGATTATTTTTCTCCCGTTGCAAC 59.137 41.667 19.89 19.89 0.00 4.17
3865 5903 4.912395 TTGCAACGCAGGGGCCTT 62.912 61.111 0.84 0.00 40.61 4.35
3866 5904 4.912395 TGCAACGCAGGGGCCTTT 62.912 61.111 0.84 0.00 36.38 3.11
3867 5905 3.615709 GCAACGCAGGGGCCTTTT 61.616 61.111 0.84 0.00 36.38 2.27
3868 5906 3.137687 CAACGCAGGGGCCTTTTT 58.862 55.556 0.84 0.00 36.38 1.94
3869 5907 1.300853 CAACGCAGGGGCCTTTTTG 60.301 57.895 0.84 0.00 36.38 2.44
3870 5908 3.163832 AACGCAGGGGCCTTTTTGC 62.164 57.895 0.84 8.08 36.38 3.68
3871 5909 3.305516 CGCAGGGGCCTTTTTGCT 61.306 61.111 0.84 0.00 36.38 3.91
3872 5910 1.976474 CGCAGGGGCCTTTTTGCTA 60.976 57.895 0.84 0.00 36.38 3.49
3873 5911 1.893062 GCAGGGGCCTTTTTGCTAG 59.107 57.895 0.84 0.00 33.88 3.42
3962 6039 8.918202 TTTGAAACTACACTAGTGATTGGATT 57.082 30.769 29.30 14.72 39.39 3.01
3968 6045 6.909698 ACTACACTAGTGATTGGATTGCATCC 60.910 42.308 29.30 7.90 42.94 3.51
4068 6145 6.312918 TCTGAACTTACTGAACACTTGAACAC 59.687 38.462 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.796110 ATATGGTTGTAAGGAGTGGCAT 57.204 40.909 0.00 0.00 0.00 4.40
1 2 5.702065 TTATATGGTTGTAAGGAGTGGCA 57.298 39.130 0.00 0.00 0.00 4.92
2 3 5.048713 GCATTATATGGTTGTAAGGAGTGGC 60.049 44.000 0.00 0.00 0.00 5.01
3 4 6.299141 AGCATTATATGGTTGTAAGGAGTGG 58.701 40.000 0.00 0.00 37.84 4.00
4 5 6.992123 TGAGCATTATATGGTTGTAAGGAGTG 59.008 38.462 0.00 0.00 41.77 3.51
5 6 7.136822 TGAGCATTATATGGTTGTAAGGAGT 57.863 36.000 0.00 0.00 41.77 3.85
6 7 8.627208 ATTGAGCATTATATGGTTGTAAGGAG 57.373 34.615 0.00 0.00 41.77 3.69
7 8 7.665559 GGATTGAGCATTATATGGTTGTAAGGA 59.334 37.037 0.00 0.00 41.77 3.36
8 9 7.667219 AGGATTGAGCATTATATGGTTGTAAGG 59.333 37.037 0.00 0.00 41.77 2.69
9 10 8.627208 AGGATTGAGCATTATATGGTTGTAAG 57.373 34.615 0.00 0.00 41.77 2.34
11 12 9.502091 GTTAGGATTGAGCATTATATGGTTGTA 57.498 33.333 0.00 0.00 41.77 2.41
12 13 7.998383 TGTTAGGATTGAGCATTATATGGTTGT 59.002 33.333 0.00 0.00 41.77 3.32
13 14 8.292448 GTGTTAGGATTGAGCATTATATGGTTG 58.708 37.037 0.00 0.00 41.77 3.77
14 15 7.998383 TGTGTTAGGATTGAGCATTATATGGTT 59.002 33.333 0.00 0.00 41.77 3.67
15 16 7.445402 GTGTGTTAGGATTGAGCATTATATGGT 59.555 37.037 0.00 0.00 44.87 3.55
16 17 7.445096 TGTGTGTTAGGATTGAGCATTATATGG 59.555 37.037 0.00 0.00 0.00 2.74
17 18 8.285394 GTGTGTGTTAGGATTGAGCATTATATG 58.715 37.037 0.00 0.00 0.00 1.78
18 19 7.992608 TGTGTGTGTTAGGATTGAGCATTATAT 59.007 33.333 0.00 0.00 0.00 0.86
19 20 7.279981 GTGTGTGTGTTAGGATTGAGCATTATA 59.720 37.037 0.00 0.00 0.00 0.98
20 21 6.094048 GTGTGTGTGTTAGGATTGAGCATTAT 59.906 38.462 0.00 0.00 0.00 1.28
21 22 5.411361 GTGTGTGTGTTAGGATTGAGCATTA 59.589 40.000 0.00 0.00 0.00 1.90
22 23 4.216257 GTGTGTGTGTTAGGATTGAGCATT 59.784 41.667 0.00 0.00 0.00 3.56
23 24 3.753272 GTGTGTGTGTTAGGATTGAGCAT 59.247 43.478 0.00 0.00 0.00 3.79
24 25 3.138304 GTGTGTGTGTTAGGATTGAGCA 58.862 45.455 0.00 0.00 0.00 4.26
25 26 3.058914 GTGTGTGTGTGTTAGGATTGAGC 60.059 47.826 0.00 0.00 0.00 4.26
26 27 4.024893 GTGTGTGTGTGTGTTAGGATTGAG 60.025 45.833 0.00 0.00 0.00 3.02
27 28 3.874543 GTGTGTGTGTGTGTTAGGATTGA 59.125 43.478 0.00 0.00 0.00 2.57
28 29 3.625313 TGTGTGTGTGTGTGTTAGGATTG 59.375 43.478 0.00 0.00 0.00 2.67
29 30 3.625764 GTGTGTGTGTGTGTGTTAGGATT 59.374 43.478 0.00 0.00 0.00 3.01
30 31 3.202906 GTGTGTGTGTGTGTGTTAGGAT 58.797 45.455 0.00 0.00 0.00 3.24
31 32 2.028020 TGTGTGTGTGTGTGTGTTAGGA 60.028 45.455 0.00 0.00 0.00 2.94
32 33 2.351455 TGTGTGTGTGTGTGTGTTAGG 58.649 47.619 0.00 0.00 0.00 2.69
33 34 5.726729 TTATGTGTGTGTGTGTGTGTTAG 57.273 39.130 0.00 0.00 0.00 2.34
34 35 5.817816 TGATTATGTGTGTGTGTGTGTGTTA 59.182 36.000 0.00 0.00 0.00 2.41
35 36 4.637977 TGATTATGTGTGTGTGTGTGTGTT 59.362 37.500 0.00 0.00 0.00 3.32
36 37 4.035091 GTGATTATGTGTGTGTGTGTGTGT 59.965 41.667 0.00 0.00 0.00 3.72
37 38 4.273235 AGTGATTATGTGTGTGTGTGTGTG 59.727 41.667 0.00 0.00 0.00 3.82
38 39 4.450976 AGTGATTATGTGTGTGTGTGTGT 58.549 39.130 0.00 0.00 0.00 3.72
39 40 4.751600 AGAGTGATTATGTGTGTGTGTGTG 59.248 41.667 0.00 0.00 0.00 3.82
40 41 4.960938 AGAGTGATTATGTGTGTGTGTGT 58.039 39.130 0.00 0.00 0.00 3.72
41 42 5.466393 TCAAGAGTGATTATGTGTGTGTGTG 59.534 40.000 0.00 0.00 0.00 3.82
42 43 5.610398 TCAAGAGTGATTATGTGTGTGTGT 58.390 37.500 0.00 0.00 0.00 3.72
43 44 5.121298 CCTCAAGAGTGATTATGTGTGTGTG 59.879 44.000 0.00 0.00 31.85 3.82
55 56 2.264455 ACTCAAGGCCTCAAGAGTGAT 58.736 47.619 25.87 9.20 39.67 3.06
60 61 0.693049 GGGAACTCAAGGCCTCAAGA 59.307 55.000 18.64 11.00 0.00 3.02
77 78 0.325933 TTGATGTGAGGCTGACTGGG 59.674 55.000 5.53 0.00 0.00 4.45
80 81 0.689055 TGCTTGATGTGAGGCTGACT 59.311 50.000 5.53 0.00 0.00 3.41
117 118 8.825745 GCAACAAAGAAATAATGGAAAAGTTGA 58.174 29.630 0.00 0.00 34.92 3.18
124 125 9.213799 GGTTATTGCAACAAAGAAATAATGGAA 57.786 29.630 0.00 0.00 29.82 3.53
129 130 7.543868 CCGATGGTTATTGCAACAAAGAAATAA 59.456 33.333 0.00 0.00 0.00 1.40
196 197 2.079925 AGCAAGGCGAAAGAGATTCAC 58.920 47.619 0.00 0.00 37.96 3.18
214 215 1.956170 CCCATATGACGGCGTCAGC 60.956 63.158 40.31 18.67 46.04 4.26
246 247 3.135895 ACCTTGGATATTCCGTTACTGGG 59.864 47.826 0.00 0.00 40.17 4.45
251 252 5.031066 CAAGGACCTTGGATATTCCGTTA 57.969 43.478 24.42 0.00 40.17 3.18
263 264 3.019564 GGATCATGAACCAAGGACCTTG 58.980 50.000 25.05 25.05 40.75 3.61
264 265 2.922283 AGGATCATGAACCAAGGACCTT 59.078 45.455 22.67 0.00 0.00 3.50
265 266 2.507471 GAGGATCATGAACCAAGGACCT 59.493 50.000 22.67 10.26 33.17 3.85
266 267 2.507471 AGAGGATCATGAACCAAGGACC 59.493 50.000 22.67 5.81 37.82 4.46
267 268 3.432890 GGAGAGGATCATGAACCAAGGAC 60.433 52.174 22.67 9.62 37.82 3.85
268 269 2.774234 GGAGAGGATCATGAACCAAGGA 59.226 50.000 22.67 0.00 37.82 3.36
269 270 2.484417 CGGAGAGGATCATGAACCAAGG 60.484 54.545 22.67 4.80 37.82 3.61
270 271 2.432146 TCGGAGAGGATCATGAACCAAG 59.568 50.000 22.67 9.57 37.82 3.61
271 272 2.466846 TCGGAGAGGATCATGAACCAA 58.533 47.619 22.67 0.00 37.82 3.67
272 273 2.159179 TCGGAGAGGATCATGAACCA 57.841 50.000 22.67 0.00 37.82 3.67
273 274 3.323403 AGATTCGGAGAGGATCATGAACC 59.677 47.826 13.96 13.96 38.43 3.62
274 275 4.555262 GAGATTCGGAGAGGATCATGAAC 58.445 47.826 0.00 0.00 38.43 3.18
275 276 3.576118 GGAGATTCGGAGAGGATCATGAA 59.424 47.826 0.00 0.00 38.43 2.57
276 277 3.161067 GGAGATTCGGAGAGGATCATGA 58.839 50.000 0.00 0.00 38.43 3.07
277 278 3.164268 AGGAGATTCGGAGAGGATCATG 58.836 50.000 0.00 0.00 38.43 3.07
278 279 3.541242 AGGAGATTCGGAGAGGATCAT 57.459 47.619 0.00 0.00 38.43 2.45
279 280 4.141135 ACTTAGGAGATTCGGAGAGGATCA 60.141 45.833 0.00 0.00 38.43 2.92
280 281 4.403734 ACTTAGGAGATTCGGAGAGGATC 58.596 47.826 0.00 0.00 38.43 3.36
306 307 3.855689 ATATGTTTGTGGTGCAAGCTC 57.144 42.857 0.00 0.00 38.81 4.09
314 315 2.968574 TGGGTGCAAATATGTTTGTGGT 59.031 40.909 15.30 0.00 45.14 4.16
324 325 1.982660 TCGGTTGTTGGGTGCAAATA 58.017 45.000 0.00 0.00 0.00 1.40
327 328 0.457851 CTTTCGGTTGTTGGGTGCAA 59.542 50.000 0.00 0.00 0.00 4.08
343 344 0.698818 AATCCCAGGAAGTCCGCTTT 59.301 50.000 0.00 0.00 42.08 3.51
357 358 4.400567 GCATAATATTCTGCCTGGAATCCC 59.599 45.833 13.41 0.00 37.20 3.85
381 386 9.912634 TGCTTAAGTTTCAAAGATCAAATAAGG 57.087 29.630 4.02 0.00 0.00 2.69
403 408 5.221501 ACCACTGCAATTTCAAAGTATGCTT 60.222 36.000 6.83 0.00 37.86 3.91
407 412 4.759693 TCGACCACTGCAATTTCAAAGTAT 59.240 37.500 0.00 0.00 0.00 2.12
409 414 2.948979 TCGACCACTGCAATTTCAAAGT 59.051 40.909 0.00 0.00 0.00 2.66
412 417 3.145286 TCATCGACCACTGCAATTTCAA 58.855 40.909 0.00 0.00 0.00 2.69
415 420 4.549458 CTTTTCATCGACCACTGCAATTT 58.451 39.130 0.00 0.00 0.00 1.82
419 424 1.202758 ACCTTTTCATCGACCACTGCA 60.203 47.619 0.00 0.00 0.00 4.41
420 425 1.197721 CACCTTTTCATCGACCACTGC 59.802 52.381 0.00 0.00 0.00 4.40
464 469 0.525242 CAACCACACCACAACAAGCG 60.525 55.000 0.00 0.00 0.00 4.68
470 475 0.106268 ATGCCTCAACCACACCACAA 60.106 50.000 0.00 0.00 0.00 3.33
471 476 0.106268 AATGCCTCAACCACACCACA 60.106 50.000 0.00 0.00 0.00 4.17
548 553 9.338622 CGGGAGGTTTTTCTTATTAATATCAGT 57.661 33.333 0.00 0.00 0.00 3.41
550 555 7.996644 AGCGGGAGGTTTTTCTTATTAATATCA 59.003 33.333 0.00 0.00 37.18 2.15
553 558 9.683870 TTTAGCGGGAGGTTTTTCTTATTAATA 57.316 29.630 0.00 0.00 42.74 0.98
557 562 6.008331 AGTTTAGCGGGAGGTTTTTCTTATT 58.992 36.000 0.00 0.00 42.74 1.40
619 627 8.912988 TCTTTTGTCCAACAGATACATTTCTTT 58.087 29.630 0.00 0.00 0.00 2.52
621 629 7.721399 ACTCTTTTGTCCAACAGATACATTTCT 59.279 33.333 0.00 0.00 0.00 2.52
631 640 2.426738 TGCCAACTCTTTTGTCCAACAG 59.573 45.455 0.00 0.00 0.00 3.16
671 680 5.637810 TCATCCTCACGTCACTAAATTTGTC 59.362 40.000 0.00 0.00 0.00 3.18
672 681 5.408604 GTCATCCTCACGTCACTAAATTTGT 59.591 40.000 0.00 0.00 0.00 2.83
676 685 4.801330 TGTCATCCTCACGTCACTAAAT 57.199 40.909 0.00 0.00 0.00 1.40
715 724 2.412847 GCCATCCGAAAAGAAGTTGTCG 60.413 50.000 0.00 0.00 0.00 4.35
724 733 7.420184 AAAATAAAACTTGCCATCCGAAAAG 57.580 32.000 0.00 0.00 0.00 2.27
759 775 5.285651 CAACTAAGGTTGCAATCCGAAAAA 58.714 37.500 5.96 0.00 44.83 1.94
775 791 6.348213 CCGGACCTGATGTTTTTACAACTAAG 60.348 42.308 0.00 0.00 0.00 2.18
784 800 2.231235 GCATTCCGGACCTGATGTTTTT 59.769 45.455 15.73 0.00 0.00 1.94
806 822 1.807165 CACGATCCAGTGGCACGAG 60.807 63.158 25.99 17.97 38.40 4.18
816 832 2.490509 ACGATAAGTGTCACACGATCCA 59.509 45.455 16.12 0.00 39.64 3.41
817 833 3.146618 ACGATAAGTGTCACACGATCC 57.853 47.619 16.12 2.87 39.64 3.36
857 877 2.478872 TCTCCTTAGGCAGCTATGGT 57.521 50.000 0.00 0.00 0.00 3.55
863 883 1.827969 TCTGTCTTCTCCTTAGGCAGC 59.172 52.381 0.00 0.00 43.38 5.25
865 885 3.713003 TGATCTGTCTTCTCCTTAGGCA 58.287 45.455 0.00 0.00 0.00 4.75
896 2613 3.650139 TCTTCTGTACAAGCGGTTTCTC 58.350 45.455 0.00 0.00 0.00 2.87
908 2625 1.062880 CCGTCGAGCTCTCTTCTGTAC 59.937 57.143 12.85 0.00 0.00 2.90
912 2629 0.322636 TTCCCGTCGAGCTCTCTTCT 60.323 55.000 12.85 0.00 0.00 2.85
1014 2731 2.232452 AGAGAGAAATGTGTCCGAGGTG 59.768 50.000 0.00 0.00 0.00 4.00
1024 2741 2.043227 GGGGATCCGAGAGAGAAATGT 58.957 52.381 5.45 0.00 0.00 2.71
1037 2754 1.203075 AGATAGACTGGACGGGGATCC 60.203 57.143 1.92 1.92 39.45 3.36
1090 2816 1.946984 ACCTACGAACCCCATTCAGA 58.053 50.000 0.00 0.00 37.12 3.27
1256 2988 3.058224 GCTTCGAATCGGGGAAATTATGG 60.058 47.826 1.76 0.00 0.00 2.74
1281 3014 4.937696 TCTCGCGATAGAATTTGCAAAA 57.062 36.364 17.19 0.00 39.76 2.44
1293 3026 1.794701 GCAATCAGCATTCTCGCGATA 59.205 47.619 10.36 0.00 44.79 2.92
1342 3076 1.351017 AGGACAATCACACCGGAATGT 59.649 47.619 9.46 0.00 33.76 2.71
1354 3088 7.630242 TCCAAATTTCTGATACAGGACAATC 57.370 36.000 0.00 0.00 31.51 2.67
1355 3089 9.872684 ATATCCAAATTTCTGATACAGGACAAT 57.127 29.630 8.43 0.00 31.51 2.71
1357 3091 7.720957 CCATATCCAAATTTCTGATACAGGACA 59.279 37.037 14.90 0.00 31.51 4.02
1358 3092 7.939039 TCCATATCCAAATTTCTGATACAGGAC 59.061 37.037 16.76 0.00 30.08 3.85
1359 3093 7.939039 GTCCATATCCAAATTTCTGATACAGGA 59.061 37.037 16.76 16.76 31.42 3.86
1360 3094 7.175641 GGTCCATATCCAAATTTCTGATACAGG 59.824 40.741 8.43 11.87 31.51 4.00
1362 3096 7.815383 AGGTCCATATCCAAATTTCTGATACA 58.185 34.615 8.43 0.00 0.00 2.29
1363 3097 8.160106 AGAGGTCCATATCCAAATTTCTGATAC 58.840 37.037 8.43 1.39 0.00 2.24
1364 3098 8.159447 CAGAGGTCCATATCCAAATTTCTGATA 58.841 37.037 8.61 8.61 32.25 2.15
1365 3099 7.002879 CAGAGGTCCATATCCAAATTTCTGAT 58.997 38.462 5.36 5.36 32.25 2.90
1366 3100 6.158520 TCAGAGGTCCATATCCAAATTTCTGA 59.841 38.462 0.00 0.00 36.09 3.27
1367 3101 6.359804 TCAGAGGTCCATATCCAAATTTCTG 58.640 40.000 0.00 0.00 0.00 3.02
1368 3102 6.581388 TCAGAGGTCCATATCCAAATTTCT 57.419 37.500 0.00 0.00 0.00 2.52
1369 3103 7.056635 TCTTCAGAGGTCCATATCCAAATTTC 58.943 38.462 0.00 0.00 0.00 2.17
1395 3129 6.131972 TCCATCTTTCAGAGATTTCAAGGT 57.868 37.500 0.00 0.00 42.55 3.50
1714 3505 7.606858 AAGGGAAAACTTAATACTAGTTCGC 57.393 36.000 0.00 0.00 34.88 4.70
1731 3522 8.933653 AGTAAGGATTCAATTCAAAAAGGGAAA 58.066 29.630 0.00 0.00 0.00 3.13
1766 3557 2.517959 TGCAGGGTGAAAAGAATCCAG 58.482 47.619 0.00 0.00 0.00 3.86
1768 3559 4.541973 AATTGCAGGGTGAAAAGAATCC 57.458 40.909 0.00 0.00 0.00 3.01
1796 3589 1.600164 CCGTCGAAACCTCGTAACACA 60.600 52.381 0.00 0.00 45.62 3.72
1803 3596 1.769733 TACAAACCGTCGAAACCTCG 58.230 50.000 0.00 0.00 46.87 4.63
1956 3881 8.450964 CCTAATACTAACATTCAACCAGTTGTG 58.549 37.037 10.17 5.22 41.16 3.33
2102 4031 2.260844 TTGACAAGCCACAGGAGAAG 57.739 50.000 0.00 0.00 0.00 2.85
2186 4115 1.926108 ACCTAGGTCCACTCAGTCAC 58.074 55.000 9.21 0.00 0.00 3.67
2188 4117 2.526432 TGAACCTAGGTCCACTCAGTC 58.474 52.381 16.64 6.96 0.00 3.51
2236 4165 7.806014 GCTCAGACTCTGTTACTAAGCATATAC 59.194 40.741 5.94 0.00 32.61 1.47
2245 4174 4.833380 ACTTTGGCTCAGACTCTGTTACTA 59.167 41.667 5.94 0.00 32.61 1.82
2356 4300 0.035598 TACCGCTGCTGCCAACTTTA 59.964 50.000 10.24 0.00 35.36 1.85
2833 4852 3.945285 GTCAACCACAAGAAGAAAGACCA 59.055 43.478 0.00 0.00 0.00 4.02
2923 4951 5.008613 TGCACTTGGATCTTGTACTTGAAAC 59.991 40.000 0.00 0.00 0.00 2.78
3314 5352 1.682451 GGCCGGGCTACACACATCTA 61.682 60.000 22.87 0.00 0.00 1.98
3321 5359 2.125106 CTCTTGGCCGGGCTACAC 60.125 66.667 29.87 2.11 0.00 2.90
3504 5542 6.847956 TGAAAAATGGCAACTCTTTCAATG 57.152 33.333 11.71 0.00 37.61 2.82
3575 5613 9.813826 CCAAGAATATCACCTCCCTTTAATAAT 57.186 33.333 0.00 0.00 0.00 1.28
3576 5614 8.787818 ACCAAGAATATCACCTCCCTTTAATAA 58.212 33.333 0.00 0.00 0.00 1.40
3577 5615 8.344939 ACCAAGAATATCACCTCCCTTTAATA 57.655 34.615 0.00 0.00 0.00 0.98
3578 5616 7.226059 ACCAAGAATATCACCTCCCTTTAAT 57.774 36.000 0.00 0.00 0.00 1.40
3579 5617 6.652205 ACCAAGAATATCACCTCCCTTTAA 57.348 37.500 0.00 0.00 0.00 1.52
3580 5618 6.652205 AACCAAGAATATCACCTCCCTTTA 57.348 37.500 0.00 0.00 0.00 1.85
3581 5619 5.536497 AACCAAGAATATCACCTCCCTTT 57.464 39.130 0.00 0.00 0.00 3.11
3582 5620 5.510430 GAAACCAAGAATATCACCTCCCTT 58.490 41.667 0.00 0.00 0.00 3.95
3583 5621 4.384208 CGAAACCAAGAATATCACCTCCCT 60.384 45.833 0.00 0.00 0.00 4.20
3584 5622 3.877508 CGAAACCAAGAATATCACCTCCC 59.122 47.826 0.00 0.00 0.00 4.30
3585 5623 4.514401 ACGAAACCAAGAATATCACCTCC 58.486 43.478 0.00 0.00 0.00 4.30
3586 5624 4.571176 GGACGAAACCAAGAATATCACCTC 59.429 45.833 0.00 0.00 0.00 3.85
3587 5625 4.225267 AGGACGAAACCAAGAATATCACCT 59.775 41.667 0.00 0.00 0.00 4.00
3588 5626 4.332819 CAGGACGAAACCAAGAATATCACC 59.667 45.833 0.00 0.00 0.00 4.02
3589 5627 4.935808 ACAGGACGAAACCAAGAATATCAC 59.064 41.667 0.00 0.00 0.00 3.06
3590 5628 5.160607 ACAGGACGAAACCAAGAATATCA 57.839 39.130 0.00 0.00 0.00 2.15
3591 5629 6.496338 AAACAGGACGAAACCAAGAATATC 57.504 37.500 0.00 0.00 0.00 1.63
3592 5630 6.264518 ACAAAACAGGACGAAACCAAGAATAT 59.735 34.615 0.00 0.00 0.00 1.28
3593 5631 5.591067 ACAAAACAGGACGAAACCAAGAATA 59.409 36.000 0.00 0.00 0.00 1.75
3594 5632 4.401202 ACAAAACAGGACGAAACCAAGAAT 59.599 37.500 0.00 0.00 0.00 2.40
3595 5633 3.759618 ACAAAACAGGACGAAACCAAGAA 59.240 39.130 0.00 0.00 0.00 2.52
3596 5634 3.349022 ACAAAACAGGACGAAACCAAGA 58.651 40.909 0.00 0.00 0.00 3.02
3597 5635 3.775661 ACAAAACAGGACGAAACCAAG 57.224 42.857 0.00 0.00 0.00 3.61
3598 5636 4.022242 TCAAACAAAACAGGACGAAACCAA 60.022 37.500 0.00 0.00 0.00 3.67
3599 5637 3.506455 TCAAACAAAACAGGACGAAACCA 59.494 39.130 0.00 0.00 0.00 3.67
3600 5638 4.099380 TCAAACAAAACAGGACGAAACC 57.901 40.909 0.00 0.00 0.00 3.27
3601 5639 4.738252 GGATCAAACAAAACAGGACGAAAC 59.262 41.667 0.00 0.00 0.00 2.78
3602 5640 4.399618 TGGATCAAACAAAACAGGACGAAA 59.600 37.500 0.00 0.00 0.00 3.46
3603 5641 3.948473 TGGATCAAACAAAACAGGACGAA 59.052 39.130 0.00 0.00 0.00 3.85
3604 5642 3.314080 GTGGATCAAACAAAACAGGACGA 59.686 43.478 0.00 0.00 0.00 4.20
3605 5643 3.315191 AGTGGATCAAACAAAACAGGACG 59.685 43.478 0.00 0.00 0.00 4.79
3606 5644 4.918810 AGTGGATCAAACAAAACAGGAC 57.081 40.909 0.00 0.00 0.00 3.85
3607 5645 4.952957 TGAAGTGGATCAAACAAAACAGGA 59.047 37.500 0.00 0.00 0.00 3.86
3608 5646 5.261209 TGAAGTGGATCAAACAAAACAGG 57.739 39.130 0.00 0.00 0.00 4.00
3609 5647 7.775397 AATTGAAGTGGATCAAACAAAACAG 57.225 32.000 0.00 0.00 42.22 3.16
3610 5648 9.829507 ATTAATTGAAGTGGATCAAACAAAACA 57.170 25.926 0.00 0.00 42.22 2.83
3620 5658 9.438291 CGTACATGAAATTAATTGAAGTGGATC 57.562 33.333 0.00 0.00 0.00 3.36
3621 5659 7.915397 GCGTACATGAAATTAATTGAAGTGGAT 59.085 33.333 0.00 0.00 0.00 3.41
3622 5660 7.120579 AGCGTACATGAAATTAATTGAAGTGGA 59.879 33.333 0.00 0.00 0.00 4.02
3623 5661 7.250569 AGCGTACATGAAATTAATTGAAGTGG 58.749 34.615 0.00 0.00 0.00 4.00
3624 5662 9.935682 ATAGCGTACATGAAATTAATTGAAGTG 57.064 29.630 0.00 2.13 0.00 3.16
3628 5666 9.729023 CCAAATAGCGTACATGAAATTAATTGA 57.271 29.630 0.00 0.00 0.00 2.57
3629 5667 9.515020 ACCAAATAGCGTACATGAAATTAATTG 57.485 29.630 0.00 0.00 0.00 2.32
3632 5670 9.562583 GAAACCAAATAGCGTACATGAAATTAA 57.437 29.630 0.00 0.00 0.00 1.40
3633 5671 7.906010 CGAAACCAAATAGCGTACATGAAATTA 59.094 33.333 0.00 0.00 0.00 1.40
3634 5672 6.745450 CGAAACCAAATAGCGTACATGAAATT 59.255 34.615 0.00 0.00 0.00 1.82
3635 5673 6.128117 ACGAAACCAAATAGCGTACATGAAAT 60.128 34.615 0.00 0.00 32.94 2.17
3636 5674 5.179742 ACGAAACCAAATAGCGTACATGAAA 59.820 36.000 0.00 0.00 32.94 2.69
3637 5675 4.691685 ACGAAACCAAATAGCGTACATGAA 59.308 37.500 0.00 0.00 32.94 2.57
3638 5676 4.247258 ACGAAACCAAATAGCGTACATGA 58.753 39.130 0.00 0.00 32.94 3.07
3639 5677 4.593597 ACGAAACCAAATAGCGTACATG 57.406 40.909 0.00 0.00 32.94 3.21
3640 5678 5.638657 TGTAACGAAACCAAATAGCGTACAT 59.361 36.000 0.00 0.00 34.46 2.29
3641 5679 4.987285 TGTAACGAAACCAAATAGCGTACA 59.013 37.500 0.00 0.00 34.46 2.90
3642 5680 5.514059 TGTAACGAAACCAAATAGCGTAC 57.486 39.130 0.00 0.00 34.46 3.67
3643 5681 5.446206 GCATGTAACGAAACCAAATAGCGTA 60.446 40.000 0.00 0.00 34.46 4.42
3644 5682 4.670735 GCATGTAACGAAACCAAATAGCGT 60.671 41.667 0.00 0.00 36.68 5.07
3645 5683 3.783943 GCATGTAACGAAACCAAATAGCG 59.216 43.478 0.00 0.00 0.00 4.26
3646 5684 4.102649 GGCATGTAACGAAACCAAATAGC 58.897 43.478 0.00 0.00 0.00 2.97
3647 5685 5.092781 GTGGCATGTAACGAAACCAAATAG 58.907 41.667 0.00 0.00 0.00 1.73
3648 5686 4.082679 GGTGGCATGTAACGAAACCAAATA 60.083 41.667 0.00 0.00 0.00 1.40
3649 5687 3.305744 GGTGGCATGTAACGAAACCAAAT 60.306 43.478 0.00 0.00 0.00 2.32
3650 5688 2.034812 GGTGGCATGTAACGAAACCAAA 59.965 45.455 0.00 0.00 0.00 3.28
3651 5689 1.609555 GGTGGCATGTAACGAAACCAA 59.390 47.619 0.00 0.00 0.00 3.67
3652 5690 1.240256 GGTGGCATGTAACGAAACCA 58.760 50.000 0.00 0.00 0.00 3.67
3653 5691 0.524414 GGGTGGCATGTAACGAAACC 59.476 55.000 0.00 0.00 0.00 3.27
3654 5692 0.167251 CGGGTGGCATGTAACGAAAC 59.833 55.000 0.00 0.00 0.00 2.78
3655 5693 0.250381 ACGGGTGGCATGTAACGAAA 60.250 50.000 0.00 0.00 0.00 3.46
3656 5694 0.250381 AACGGGTGGCATGTAACGAA 60.250 50.000 0.00 0.00 0.00 3.85
3657 5695 0.250381 AAACGGGTGGCATGTAACGA 60.250 50.000 0.00 0.00 0.00 3.85
3658 5696 0.594110 AAAACGGGTGGCATGTAACG 59.406 50.000 0.00 0.00 0.00 3.18
3659 5697 1.336424 CCAAAACGGGTGGCATGTAAC 60.336 52.381 0.00 0.00 0.00 2.50
3660 5698 0.962489 CCAAAACGGGTGGCATGTAA 59.038 50.000 0.00 0.00 0.00 2.41
3661 5699 2.647356 CCAAAACGGGTGGCATGTA 58.353 52.632 0.00 0.00 0.00 2.29
3662 5700 3.453988 CCAAAACGGGTGGCATGT 58.546 55.556 0.00 0.00 0.00 3.21
3667 5705 2.840102 TTGGGCCAAAACGGGTGG 60.840 61.111 18.51 0.00 39.33 4.61
3668 5706 2.419620 GTTGGGCCAAAACGGGTG 59.580 61.111 22.82 0.00 34.06 4.61
3669 5707 3.220658 CGTTGGGCCAAAACGGGT 61.221 61.111 26.78 0.00 45.05 5.28
3673 5711 1.110518 TTCCTCCGTTGGGCCAAAAC 61.111 55.000 22.82 9.70 0.00 2.43
3674 5712 0.825840 CTTCCTCCGTTGGGCCAAAA 60.826 55.000 22.82 9.63 0.00 2.44
3675 5713 1.228429 CTTCCTCCGTTGGGCCAAA 60.228 57.895 22.82 4.50 0.00 3.28
3676 5714 2.434331 CTTCCTCCGTTGGGCCAA 59.566 61.111 16.66 16.66 0.00 4.52
3677 5715 4.344865 GCTTCCTCCGTTGGGCCA 62.345 66.667 0.00 0.00 0.00 5.36
3680 5718 3.646715 TGGGCTTCCTCCGTTGGG 61.647 66.667 0.00 0.00 0.00 4.12
3681 5719 2.359975 GTGGGCTTCCTCCGTTGG 60.360 66.667 0.00 0.00 0.00 3.77
3682 5720 2.359975 GGTGGGCTTCCTCCGTTG 60.360 66.667 0.00 0.00 34.87 4.10
3683 5721 2.529389 AGGTGGGCTTCCTCCGTT 60.529 61.111 0.00 0.00 46.14 4.44
3684 5722 3.322466 CAGGTGGGCTTCCTCCGT 61.322 66.667 0.00 0.00 46.14 4.69
3685 5723 3.003173 TCAGGTGGGCTTCCTCCG 61.003 66.667 0.00 0.00 46.14 4.63
3686 5724 2.671682 GTCAGGTGGGCTTCCTCC 59.328 66.667 0.00 0.00 42.91 4.30
3687 5725 2.266055 CGTCAGGTGGGCTTCCTC 59.734 66.667 0.00 0.00 32.37 3.71
3688 5726 3.322466 CCGTCAGGTGGGCTTCCT 61.322 66.667 0.00 0.00 35.45 3.36
3694 5732 3.941188 AGTGTGCCGTCAGGTGGG 61.941 66.667 0.00 0.00 40.50 4.61
3695 5733 2.666190 CAGTGTGCCGTCAGGTGG 60.666 66.667 0.00 0.00 40.50 4.61
3696 5734 2.108976 ACAGTGTGCCGTCAGGTG 59.891 61.111 0.00 0.00 40.50 4.00
3697 5735 2.108976 CACAGTGTGCCGTCAGGT 59.891 61.111 10.97 0.00 40.50 4.00
3698 5736 2.666190 CCACAGTGTGCCGTCAGG 60.666 66.667 18.21 0.00 41.62 3.86
3699 5737 3.349006 GCCACAGTGTGCCGTCAG 61.349 66.667 18.21 4.20 31.34 3.51
3700 5738 4.927782 GGCCACAGTGTGCCGTCA 62.928 66.667 18.21 0.00 31.34 4.35
3706 5744 2.972505 GACGTGGGCCACAGTGTG 60.973 66.667 34.11 20.52 33.40 3.82
3707 5745 4.250305 GGACGTGGGCCACAGTGT 62.250 66.667 34.11 24.27 33.40 3.55
3716 5754 4.135153 CAGCTCTCCGGACGTGGG 62.135 72.222 0.00 0.00 0.00 4.61
3717 5755 4.135153 CCAGCTCTCCGGACGTGG 62.135 72.222 0.00 0.56 0.00 4.94
3718 5756 4.803426 GCCAGCTCTCCGGACGTG 62.803 72.222 0.00 0.00 0.00 4.49
3720 5758 3.589654 TTTGCCAGCTCTCCGGACG 62.590 63.158 0.00 0.00 0.00 4.79
3721 5759 2.035442 GTTTGCCAGCTCTCCGGAC 61.035 63.158 0.00 0.00 0.00 4.79
3722 5760 2.050836 TTGTTTGCCAGCTCTCCGGA 62.051 55.000 2.93 2.93 0.00 5.14
3723 5761 1.172180 TTTGTTTGCCAGCTCTCCGG 61.172 55.000 0.00 0.00 0.00 5.14
3724 5762 0.667993 TTTTGTTTGCCAGCTCTCCG 59.332 50.000 0.00 0.00 0.00 4.63
3725 5763 2.888834 TTTTTGTTTGCCAGCTCTCC 57.111 45.000 0.00 0.00 0.00 3.71
3744 5782 1.754201 GCCCTCCCATCGGCTATTTTT 60.754 52.381 0.00 0.00 42.21 1.94
3745 5783 0.178990 GCCCTCCCATCGGCTATTTT 60.179 55.000 0.00 0.00 42.21 1.82
3746 5784 1.456287 GCCCTCCCATCGGCTATTT 59.544 57.895 0.00 0.00 42.21 1.40
3747 5785 3.161557 GCCCTCCCATCGGCTATT 58.838 61.111 0.00 0.00 42.21 1.73
3752 5790 2.919856 ATCGAGCCCTCCCATCGG 60.920 66.667 0.00 0.00 37.08 4.18
3753 5791 1.872197 GAGATCGAGCCCTCCCATCG 61.872 65.000 0.00 0.00 37.79 3.84
3754 5792 0.829602 TGAGATCGAGCCCTCCCATC 60.830 60.000 0.00 0.00 0.00 3.51
3755 5793 0.178909 ATGAGATCGAGCCCTCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
3756 5794 0.482887 TATGAGATCGAGCCCTCCCA 59.517 55.000 0.00 0.00 0.00 4.37
3757 5795 1.273886 GTTATGAGATCGAGCCCTCCC 59.726 57.143 0.00 0.00 0.00 4.30
3758 5796 1.273886 GGTTATGAGATCGAGCCCTCC 59.726 57.143 0.00 0.00 0.00 4.30
3759 5797 1.273886 GGGTTATGAGATCGAGCCCTC 59.726 57.143 0.00 1.02 0.00 4.30
3760 5798 1.343069 GGGTTATGAGATCGAGCCCT 58.657 55.000 0.00 0.00 0.00 5.19
3761 5799 0.038159 CGGGTTATGAGATCGAGCCC 60.038 60.000 0.00 0.00 0.00 5.19
3762 5800 0.667792 GCGGGTTATGAGATCGAGCC 60.668 60.000 0.00 0.00 0.00 4.70
3763 5801 0.667792 GGCGGGTTATGAGATCGAGC 60.668 60.000 0.00 0.00 0.00 5.03
3764 5802 0.673985 TGGCGGGTTATGAGATCGAG 59.326 55.000 0.00 0.00 0.00 4.04
3765 5803 1.116308 TTGGCGGGTTATGAGATCGA 58.884 50.000 0.00 0.00 0.00 3.59
3766 5804 1.217882 GTTGGCGGGTTATGAGATCG 58.782 55.000 0.00 0.00 0.00 3.69
3767 5805 1.594331 GGTTGGCGGGTTATGAGATC 58.406 55.000 0.00 0.00 0.00 2.75
3768 5806 0.179056 CGGTTGGCGGGTTATGAGAT 60.179 55.000 0.00 0.00 0.00 2.75
3769 5807 1.219664 CGGTTGGCGGGTTATGAGA 59.780 57.895 0.00 0.00 0.00 3.27
3770 5808 1.817941 CCGGTTGGCGGGTTATGAG 60.818 63.158 0.00 0.00 0.00 2.90
3771 5809 2.269562 CCGGTTGGCGGGTTATGA 59.730 61.111 0.00 0.00 0.00 2.15
3781 5819 3.286751 CTGTGTGTGGCCGGTTGG 61.287 66.667 1.90 0.00 38.77 3.77
3782 5820 1.662438 AAACTGTGTGTGGCCGGTTG 61.662 55.000 1.90 0.00 30.80 3.77
3783 5821 1.379309 AAACTGTGTGTGGCCGGTT 60.379 52.632 1.90 0.00 0.00 4.44
3784 5822 2.118404 CAAACTGTGTGTGGCCGGT 61.118 57.895 1.90 0.00 0.00 5.28
3785 5823 2.058829 GACAAACTGTGTGTGGCCGG 62.059 60.000 8.65 0.00 41.96 6.13
3786 5824 1.355210 GACAAACTGTGTGTGGCCG 59.645 57.895 8.65 0.00 41.96 6.13
3787 5825 1.733526 GGACAAACTGTGTGTGGCC 59.266 57.895 8.65 1.75 42.30 5.36
3788 5826 0.814457 TTGGACAAACTGTGTGTGGC 59.186 50.000 8.65 0.00 41.96 5.01
3789 5827 2.559998 GTTGGACAAACTGTGTGTGG 57.440 50.000 8.65 0.00 41.96 4.17
3807 5845 7.007723 CCTCTCATATCTCTAACTGGGTTAGT 58.992 42.308 14.49 2.25 43.95 2.24
3808 5846 7.235079 TCCTCTCATATCTCTAACTGGGTTAG 58.765 42.308 10.21 10.21 44.65 2.34
3809 5847 7.162973 TCCTCTCATATCTCTAACTGGGTTA 57.837 40.000 0.00 0.00 0.00 2.85
3810 5848 6.031964 TCCTCTCATATCTCTAACTGGGTT 57.968 41.667 0.00 0.00 0.00 4.11
3811 5849 5.671463 TCCTCTCATATCTCTAACTGGGT 57.329 43.478 0.00 0.00 0.00 4.51
3812 5850 8.837099 ATAATCCTCTCATATCTCTAACTGGG 57.163 38.462 0.00 0.00 0.00 4.45
3820 5858 9.665719 GGGAGAAAAATAATCCTCTCATATCTC 57.334 37.037 0.00 0.00 36.78 2.75
3821 5859 8.317679 CGGGAGAAAAATAATCCTCTCATATCT 58.682 37.037 0.00 0.00 36.78 1.98
3822 5860 8.097662 ACGGGAGAAAAATAATCCTCTCATATC 58.902 37.037 0.00 0.00 36.78 1.63
3823 5861 7.978925 ACGGGAGAAAAATAATCCTCTCATAT 58.021 34.615 0.00 0.00 36.78 1.78
3824 5862 7.374975 ACGGGAGAAAAATAATCCTCTCATA 57.625 36.000 0.00 0.00 36.78 2.15
3825 5863 6.253946 ACGGGAGAAAAATAATCCTCTCAT 57.746 37.500 0.00 0.00 36.78 2.90
3826 5864 5.693769 ACGGGAGAAAAATAATCCTCTCA 57.306 39.130 0.00 0.00 36.78 3.27
3827 5865 5.220873 GCAACGGGAGAAAAATAATCCTCTC 60.221 44.000 0.00 0.00 34.75 3.20
3828 5866 4.640647 GCAACGGGAGAAAAATAATCCTCT 59.359 41.667 0.00 0.00 33.40 3.69
3829 5867 4.398044 TGCAACGGGAGAAAAATAATCCTC 59.602 41.667 0.00 0.00 33.40 3.71
3830 5868 4.340617 TGCAACGGGAGAAAAATAATCCT 58.659 39.130 0.00 0.00 33.40 3.24
3831 5869 4.712122 TGCAACGGGAGAAAAATAATCC 57.288 40.909 0.00 0.00 0.00 3.01
3848 5886 4.912395 AAGGCCCCTGCGTTGCAA 62.912 61.111 0.00 0.00 43.49 4.08
3849 5887 4.912395 AAAGGCCCCTGCGTTGCA 62.912 61.111 0.00 0.00 44.30 4.08
3850 5888 3.163832 AAAAAGGCCCCTGCGTTGC 62.164 57.895 0.00 0.00 44.30 4.17
3851 5889 1.300853 CAAAAAGGCCCCTGCGTTG 60.301 57.895 0.00 0.00 44.30 4.10
3852 5890 3.137687 CAAAAAGGCCCCTGCGTT 58.862 55.556 0.00 0.00 46.85 4.84
3853 5891 2.706952 TAGCAAAAAGGCCCCTGCGT 62.707 55.000 0.00 0.00 39.80 5.24
3854 5892 1.937546 CTAGCAAAAAGGCCCCTGCG 61.938 60.000 0.00 0.00 39.80 5.18
3855 5893 0.900182 ACTAGCAAAAAGGCCCCTGC 60.900 55.000 0.00 3.11 34.96 4.85
3856 5894 2.026262 TCTACTAGCAAAAAGGCCCCTG 60.026 50.000 0.00 0.00 0.00 4.45
3857 5895 2.275466 TCTACTAGCAAAAAGGCCCCT 58.725 47.619 0.00 0.00 0.00 4.79
3858 5896 2.801077 TCTACTAGCAAAAAGGCCCC 57.199 50.000 0.00 0.00 0.00 5.80
3859 5897 8.759782 TCTATATATCTACTAGCAAAAAGGCCC 58.240 37.037 0.00 0.00 0.00 5.80
3860 5898 9.810545 CTCTATATATCTACTAGCAAAAAGGCC 57.189 37.037 0.00 0.00 0.00 5.19
3866 5904 9.736414 ACGGAACTCTATATATCTACTAGCAAA 57.264 33.333 0.00 0.00 0.00 3.68
3867 5905 9.736414 AACGGAACTCTATATATCTACTAGCAA 57.264 33.333 0.00 0.00 0.00 3.91
3868 5906 9.163899 CAACGGAACTCTATATATCTACTAGCA 57.836 37.037 0.00 0.00 0.00 3.49
3869 5907 8.614346 CCAACGGAACTCTATATATCTACTAGC 58.386 40.741 0.00 0.00 0.00 3.42
3870 5908 9.887629 TCCAACGGAACTCTATATATCTACTAG 57.112 37.037 0.00 0.00 0.00 2.57
3871 5909 9.887629 CTCCAACGGAACTCTATATATCTACTA 57.112 37.037 0.00 0.00 0.00 1.82
3872 5910 7.337436 GCTCCAACGGAACTCTATATATCTACT 59.663 40.741 0.00 0.00 0.00 2.57
3873 5911 7.337436 AGCTCCAACGGAACTCTATATATCTAC 59.663 40.741 0.00 0.00 0.00 2.59
3944 6021 6.536731 GATGCAATCCAATCACTAGTGTAG 57.463 41.667 21.99 12.67 37.38 2.74
4068 6145 1.065031 GCAACATTACTGCAACGCGG 61.065 55.000 12.47 0.00 39.69 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.