Multiple sequence alignment - TraesCS3A01G025600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G025600 chr3A 100.000 2600 0 0 1 2600 13508577 13511176 0.000000e+00 4802.0
1 TraesCS3A01G025600 chr3D 88.027 1612 81 50 263 1816 6739555 6737998 0.000000e+00 1805.0
2 TraesCS3A01G025600 chr3D 90.541 518 39 9 1920 2432 6737635 6737123 0.000000e+00 676.0
3 TraesCS3A01G025600 chr3D 93.488 215 8 4 1 209 6739861 6739647 5.400000e-82 315.0
4 TraesCS3A01G025600 chr3D 93.077 130 3 2 1709 1832 6737762 6737633 4.420000e-43 185.0
5 TraesCS3A01G025600 chr3D 90.361 83 7 1 2465 2547 6737117 6737036 9.840000e-20 108.0
6 TraesCS3A01G025600 chr3B 87.626 1188 30 39 611 1757 8154531 8153420 0.000000e+00 1271.0
7 TraesCS3A01G025600 chr3B 86.507 667 39 21 1920 2548 8152922 8152269 0.000000e+00 686.0
8 TraesCS3A01G025600 chr3B 75.504 347 44 26 263 593 8154994 8154673 5.840000e-27 132.0
9 TraesCS3A01G025600 chr3B 93.506 77 5 0 1756 1832 8152996 8152920 5.880000e-22 115.0
10 TraesCS3A01G025600 chr3B 91.892 74 6 0 1849 1922 725852840 725852913 1.270000e-18 104.0
11 TraesCS3A01G025600 chr3B 91.781 73 6 0 1849 1921 725852811 725852739 4.580000e-18 102.0
12 TraesCS3A01G025600 chr3B 89.855 69 3 2 209 274 8155084 8155017 4.610000e-13 86.1
13 TraesCS3A01G025600 chr4A 91.781 73 6 0 1849 1921 733880803 733880731 4.580000e-18 102.0
14 TraesCS3A01G025600 chr4B 90.541 74 7 0 1849 1922 325710626 325710699 5.920000e-17 99.0
15 TraesCS3A01G025600 chr2B 90.541 74 7 0 1849 1922 329979374 329979301 5.920000e-17 99.0
16 TraesCS3A01G025600 chr2B 89.333 75 8 0 1849 1923 760132747 760132821 7.660000e-16 95.3
17 TraesCS3A01G025600 chr5D 87.838 74 9 0 1849 1922 385720496 385720423 1.280000e-13 87.9
18 TraesCS3A01G025600 chr6B 86.301 73 10 0 1849 1921 210961705 210961777 2.140000e-11 80.5
19 TraesCS3A01G025600 chr6B 86.301 73 10 0 1849 1921 210962097 210962169 2.140000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G025600 chr3A 13508577 13511176 2599 False 4802.00 4802 100.0000 1 2600 1 chr3A.!!$F1 2599
1 TraesCS3A01G025600 chr3D 6737036 6739861 2825 True 617.80 1805 91.0988 1 2547 5 chr3D.!!$R1 2546
2 TraesCS3A01G025600 chr3B 8152269 8155084 2815 True 458.02 1271 86.5996 209 2548 5 chr3B.!!$R2 2339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 223 0.982673 GTGACTCGATCGAACAACCG 59.017 55.0 19.92 8.73 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 2859 0.107081 TGCTTTTTCGGACGAAGGGA 59.893 50.0 7.25 1.65 35.38 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.756950 TCACGCTTATTTTACTGAGTTCG 57.243 39.130 0.00 0.00 0.00 3.95
105 107 9.587772 GTGGCGTTGATAATGATAGTATTATCT 57.412 33.333 15.49 0.00 44.60 1.98
129 133 3.118775 TCCATGGTCTACTCCAAATGTCG 60.119 47.826 12.58 0.00 41.09 4.35
133 137 5.160607 TGGTCTACTCCAAATGTCGAATT 57.839 39.130 0.00 0.00 34.24 2.17
209 216 1.136057 CGTTCACTGTGACTCGATCGA 60.136 52.381 18.32 18.32 0.00 3.59
210 217 2.664698 CGTTCACTGTGACTCGATCGAA 60.665 50.000 19.92 0.88 0.00 3.71
211 218 2.613730 TCACTGTGACTCGATCGAAC 57.386 50.000 19.92 14.85 0.00 3.95
212 219 1.877443 TCACTGTGACTCGATCGAACA 59.123 47.619 19.92 18.55 0.00 3.18
213 220 2.292292 TCACTGTGACTCGATCGAACAA 59.708 45.455 19.92 4.22 0.00 2.83
214 221 2.405357 CACTGTGACTCGATCGAACAAC 59.595 50.000 19.92 16.27 0.00 3.32
215 222 1.986378 CTGTGACTCGATCGAACAACC 59.014 52.381 19.92 11.27 0.00 3.77
216 223 0.982673 GTGACTCGATCGAACAACCG 59.017 55.000 19.92 8.73 0.00 4.44
274 285 3.181447 GGGAGATGGATCTGCAGATTGAA 60.181 47.826 29.26 17.97 45.75 2.69
275 286 3.814283 GGAGATGGATCTGCAGATTGAAC 59.186 47.826 29.26 19.81 43.73 3.18
276 287 3.814283 GAGATGGATCTGCAGATTGAACC 59.186 47.826 29.26 24.20 37.25 3.62
277 288 2.425143 TGGATCTGCAGATTGAACCC 57.575 50.000 29.26 23.86 34.37 4.11
278 289 1.634973 TGGATCTGCAGATTGAACCCA 59.365 47.619 29.26 25.96 34.37 4.51
279 290 2.242965 TGGATCTGCAGATTGAACCCAT 59.757 45.455 29.26 5.45 34.37 4.00
281 292 2.425143 TCTGCAGATTGAACCCATCC 57.575 50.000 13.74 0.00 0.00 3.51
359 406 3.372440 CCCCCTTGCTTGAACTAATCT 57.628 47.619 0.00 0.00 0.00 2.40
362 409 4.080299 CCCCCTTGCTTGAACTAATCTAGT 60.080 45.833 0.00 0.00 41.73 2.57
363 410 5.119694 CCCCTTGCTTGAACTAATCTAGTC 58.880 45.833 0.00 0.00 38.26 2.59
364 411 5.104735 CCCCTTGCTTGAACTAATCTAGTCT 60.105 44.000 0.00 0.00 38.26 3.24
365 412 5.814705 CCCTTGCTTGAACTAATCTAGTCTG 59.185 44.000 0.00 0.00 38.26 3.51
366 413 5.814705 CCTTGCTTGAACTAATCTAGTCTGG 59.185 44.000 0.00 0.00 38.26 3.86
419 473 1.537202 GGTGTCCAACTCAGCAATGAC 59.463 52.381 0.00 0.00 34.09 3.06
420 474 2.498167 GTGTCCAACTCAGCAATGACT 58.502 47.619 0.00 0.00 0.00 3.41
421 475 2.225019 GTGTCCAACTCAGCAATGACTG 59.775 50.000 0.00 0.00 39.12 3.51
422 476 2.158769 TGTCCAACTCAGCAATGACTGT 60.159 45.455 5.00 0.00 38.84 3.55
423 477 2.225019 GTCCAACTCAGCAATGACTGTG 59.775 50.000 5.00 5.33 38.84 3.66
424 478 2.104622 TCCAACTCAGCAATGACTGTGA 59.895 45.455 11.51 0.00 38.84 3.58
548 616 3.847602 CAGCCTGCGGGGAGAGAG 61.848 72.222 15.02 0.00 37.23 3.20
552 620 4.787280 CTGCGGGGAGAGAGGGGT 62.787 72.222 0.00 0.00 0.00 4.95
613 797 9.158364 CATATTGCGCTAATTATAATTAAGCCG 57.842 33.333 26.08 22.40 35.51 5.52
619 803 2.188062 TTATAATTAAGCCGGCCGGG 57.812 50.000 43.31 26.06 39.58 5.73
631 827 4.671569 GCCGGGCCGATGAGCTAG 62.672 72.222 30.79 9.07 0.00 3.42
641 837 2.366916 CCGATGAGCTAGATCAAACCCT 59.633 50.000 15.74 0.00 31.76 4.34
642 838 3.553922 CCGATGAGCTAGATCAAACCCTC 60.554 52.174 15.74 6.62 31.76 4.30
643 839 3.320541 CGATGAGCTAGATCAAACCCTCT 59.679 47.826 15.74 0.00 31.76 3.69
747 946 6.202188 TCGCCATTGCTAGCTAATTAAACTAC 59.798 38.462 17.23 0.00 34.43 2.73
749 948 6.363473 CCATTGCTAGCTAATTAAACTACGC 58.637 40.000 17.23 0.00 0.00 4.42
750 949 6.018262 CCATTGCTAGCTAATTAAACTACGCA 60.018 38.462 17.23 0.00 0.00 5.24
751 950 6.583912 TTGCTAGCTAATTAAACTACGCAG 57.416 37.500 17.23 0.00 0.00 5.18
752 951 4.506654 TGCTAGCTAATTAAACTACGCAGC 59.493 41.667 17.23 9.86 0.00 5.25
753 952 4.506654 GCTAGCTAATTAAACTACGCAGCA 59.493 41.667 7.70 0.00 0.00 4.41
754 953 5.332656 GCTAGCTAATTAAACTACGCAGCAG 60.333 44.000 7.70 0.00 0.00 4.24
755 954 4.755411 AGCTAATTAAACTACGCAGCAGA 58.245 39.130 0.00 0.00 0.00 4.26
756 955 4.806247 AGCTAATTAAACTACGCAGCAGAG 59.194 41.667 0.00 0.00 0.00 3.35
757 956 4.551024 GCTAATTAAACTACGCAGCAGAGC 60.551 45.833 0.00 0.00 0.00 4.09
796 995 2.328099 GCCACAAGTTCAGCGAGGG 61.328 63.158 0.00 0.00 0.00 4.30
864 1098 1.203052 GCATCACCCACCATCAACTTG 59.797 52.381 0.00 0.00 0.00 3.16
870 1104 1.535204 CCACCATCAACTTGCCACCC 61.535 60.000 0.00 0.00 0.00 4.61
876 1110 3.590574 AACTTGCCACCCCCTCCC 61.591 66.667 0.00 0.00 0.00 4.30
877 1111 4.938756 ACTTGCCACCCCCTCCCA 62.939 66.667 0.00 0.00 0.00 4.37
878 1112 3.350163 CTTGCCACCCCCTCCCAT 61.350 66.667 0.00 0.00 0.00 4.00
879 1113 2.868566 TTGCCACCCCCTCCCATT 60.869 61.111 0.00 0.00 0.00 3.16
880 1114 2.861271 CTTGCCACCCCCTCCCATTC 62.861 65.000 0.00 0.00 0.00 2.67
881 1115 4.143301 GCCACCCCCTCCCATTCC 62.143 72.222 0.00 0.00 0.00 3.01
882 1116 2.287194 CCACCCCCTCCCATTCCT 60.287 66.667 0.00 0.00 0.00 3.36
883 1117 2.386935 CCACCCCCTCCCATTCCTC 61.387 68.421 0.00 0.00 0.00 3.71
884 1118 2.044620 ACCCCCTCCCATTCCTCC 59.955 66.667 0.00 0.00 0.00 4.30
885 1119 2.778717 CCCCCTCCCATTCCTCCC 60.779 72.222 0.00 0.00 0.00 4.30
918 1152 1.208052 CCACACCGTCTCCATTGATCT 59.792 52.381 0.00 0.00 0.00 2.75
932 1166 3.962530 GATCTCCCACCCCACCCCA 62.963 68.421 0.00 0.00 0.00 4.96
955 1194 2.650116 CCTCTCACCACCTGACCCG 61.650 68.421 0.00 0.00 0.00 5.28
957 1196 3.625897 CTCACCACCTGACCCGCA 61.626 66.667 0.00 0.00 0.00 5.69
976 1215 3.567473 GCAGAGCGGTCCAAGAAC 58.433 61.111 11.73 0.00 0.00 3.01
977 1216 2.035442 GCAGAGCGGTCCAAGAACC 61.035 63.158 11.73 0.00 35.86 3.62
978 1217 1.376037 CAGAGCGGTCCAAGAACCC 60.376 63.158 11.73 0.00 35.79 4.11
979 1218 2.046217 GAGCGGTCCAAGAACCCC 60.046 66.667 2.39 0.00 35.79 4.95
980 1219 3.623703 GAGCGGTCCAAGAACCCCC 62.624 68.421 2.39 0.00 35.79 5.40
981 1220 3.961414 GCGGTCCAAGAACCCCCA 61.961 66.667 0.00 0.00 35.79 4.96
982 1221 2.033602 CGGTCCAAGAACCCCCAC 59.966 66.667 0.00 0.00 35.79 4.61
1251 1499 3.330853 CGCCGCGCATACTTCCTC 61.331 66.667 8.75 0.00 0.00 3.71
1403 1651 3.365265 GGGCGGGAACAACAGCAG 61.365 66.667 0.00 0.00 0.00 4.24
1488 1736 2.436292 CTGCTGCAGCTCCAGGAC 60.436 66.667 36.61 8.49 42.66 3.85
1705 1959 7.436673 GTGTACATGATCGAATTAGCTTCTTCT 59.563 37.037 0.00 0.00 0.00 2.85
1771 2797 3.507622 GTGCTCTACATTCTTTTGGCCTT 59.492 43.478 3.32 0.00 0.00 4.35
1834 2861 9.924010 AATCTACATACCTCTGGTATATACTCC 57.076 37.037 12.54 0.00 45.97 3.85
1835 2862 7.870027 TCTACATACCTCTGGTATATACTCCC 58.130 42.308 12.54 0.00 45.97 4.30
1836 2863 6.738205 ACATACCTCTGGTATATACTCCCT 57.262 41.667 12.54 0.00 45.97 4.20
1837 2864 7.117331 ACATACCTCTGGTATATACTCCCTT 57.883 40.000 12.54 0.00 45.97 3.95
1838 2865 7.183460 ACATACCTCTGGTATATACTCCCTTC 58.817 42.308 12.54 0.00 45.97 3.46
1839 2866 4.664392 ACCTCTGGTATATACTCCCTTCG 58.336 47.826 12.54 0.00 32.11 3.79
1840 2867 4.106019 ACCTCTGGTATATACTCCCTTCGT 59.894 45.833 12.54 0.00 32.11 3.85
1841 2868 4.701171 CCTCTGGTATATACTCCCTTCGTC 59.299 50.000 12.54 0.00 0.00 4.20
1842 2869 4.660168 TCTGGTATATACTCCCTTCGTCC 58.340 47.826 12.54 0.00 0.00 4.79
1843 2870 3.415212 TGGTATATACTCCCTTCGTCCG 58.585 50.000 12.54 0.00 0.00 4.79
1844 2871 3.072915 TGGTATATACTCCCTTCGTCCGA 59.927 47.826 12.54 0.00 0.00 4.55
1845 2872 4.074970 GGTATATACTCCCTTCGTCCGAA 58.925 47.826 12.54 1.81 0.00 4.30
1846 2873 4.520492 GGTATATACTCCCTTCGTCCGAAA 59.480 45.833 12.54 0.00 33.34 3.46
1847 2874 5.010012 GGTATATACTCCCTTCGTCCGAAAA 59.990 44.000 12.54 0.00 33.34 2.29
1848 2875 3.967332 ATACTCCCTTCGTCCGAAAAA 57.033 42.857 3.52 0.00 33.34 1.94
1849 2876 2.165319 ACTCCCTTCGTCCGAAAAAG 57.835 50.000 3.52 4.23 33.34 2.27
1850 2877 0.796927 CTCCCTTCGTCCGAAAAAGC 59.203 55.000 3.52 0.00 33.34 3.51
1851 2878 0.107081 TCCCTTCGTCCGAAAAAGCA 59.893 50.000 3.52 0.00 33.34 3.91
1852 2879 0.237498 CCCTTCGTCCGAAAAAGCAC 59.763 55.000 3.52 0.00 33.34 4.40
1853 2880 1.226746 CCTTCGTCCGAAAAAGCACT 58.773 50.000 3.52 0.00 33.34 4.40
1854 2881 2.409975 CCTTCGTCCGAAAAAGCACTA 58.590 47.619 3.52 0.00 33.34 2.74
1855 2882 2.803956 CCTTCGTCCGAAAAAGCACTAA 59.196 45.455 3.52 0.00 33.34 2.24
1856 2883 3.435671 CCTTCGTCCGAAAAAGCACTAAT 59.564 43.478 3.52 0.00 33.34 1.73
1857 2884 4.083484 CCTTCGTCCGAAAAAGCACTAATT 60.083 41.667 3.52 0.00 33.34 1.40
1858 2885 5.427036 TTCGTCCGAAAAAGCACTAATTT 57.573 34.783 0.00 0.00 0.00 1.82
1859 2886 4.778904 TCGTCCGAAAAAGCACTAATTTG 58.221 39.130 0.00 0.00 0.00 2.32
1860 2887 3.911964 CGTCCGAAAAAGCACTAATTTGG 59.088 43.478 0.00 0.00 0.00 3.28
1861 2888 4.555906 CGTCCGAAAAAGCACTAATTTGGT 60.556 41.667 0.00 0.00 0.00 3.67
1862 2889 4.679654 GTCCGAAAAAGCACTAATTTGGTG 59.320 41.667 8.41 8.41 37.70 4.17
1874 2901 7.426929 CACTAATTTGGTGCTAGATACATCC 57.573 40.000 0.00 0.00 0.00 3.51
1875 2902 6.992123 CACTAATTTGGTGCTAGATACATCCA 59.008 38.462 0.00 0.00 0.00 3.41
1876 2903 7.663081 CACTAATTTGGTGCTAGATACATCCAT 59.337 37.037 0.00 0.00 0.00 3.41
1877 2904 8.220559 ACTAATTTGGTGCTAGATACATCCATT 58.779 33.333 0.00 0.00 0.00 3.16
1878 2905 7.902920 AATTTGGTGCTAGATACATCCATTT 57.097 32.000 0.00 0.00 0.00 2.32
1879 2906 6.698008 TTTGGTGCTAGATACATCCATTTG 57.302 37.500 0.00 0.00 0.00 2.32
1880 2907 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
1881 2908 5.368145 TGGTGCTAGATACATCCATTTGAC 58.632 41.667 0.00 0.00 0.00 3.18
1882 2909 5.104569 TGGTGCTAGATACATCCATTTGACA 60.105 40.000 0.00 0.00 0.00 3.58
1883 2910 5.822519 GGTGCTAGATACATCCATTTGACAA 59.177 40.000 0.00 0.00 0.00 3.18
1884 2911 6.318648 GGTGCTAGATACATCCATTTGACAAA 59.681 38.462 2.48 2.48 0.00 2.83
1885 2912 7.189512 GTGCTAGATACATCCATTTGACAAAC 58.810 38.462 1.94 0.00 0.00 2.93
1886 2913 6.883756 TGCTAGATACATCCATTTGACAAACA 59.116 34.615 1.94 0.00 0.00 2.83
1887 2914 7.392953 TGCTAGATACATCCATTTGACAAACAA 59.607 33.333 1.94 0.00 36.65 2.83
1888 2915 7.912250 GCTAGATACATCCATTTGACAAACAAG 59.088 37.037 1.94 0.00 39.77 3.16
1889 2916 6.624423 AGATACATCCATTTGACAAACAAGC 58.376 36.000 1.94 0.00 39.77 4.01
1890 2917 4.942761 ACATCCATTTGACAAACAAGCT 57.057 36.364 1.94 0.00 39.77 3.74
1891 2918 5.280654 ACATCCATTTGACAAACAAGCTT 57.719 34.783 1.94 0.00 39.77 3.74
1892 2919 5.051816 ACATCCATTTGACAAACAAGCTTG 58.948 37.500 24.84 24.84 39.77 4.01
1893 2920 4.057406 TCCATTTGACAAACAAGCTTGG 57.943 40.909 29.18 14.74 39.77 3.61
1894 2921 3.132925 CCATTTGACAAACAAGCTTGGG 58.867 45.455 29.18 19.80 39.77 4.12
1895 2922 2.977772 TTTGACAAACAAGCTTGGGG 57.022 45.000 29.18 19.47 39.77 4.96
1896 2923 1.859302 TTGACAAACAAGCTTGGGGT 58.141 45.000 29.18 22.30 34.20 4.95
1897 2924 2.738587 TGACAAACAAGCTTGGGGTA 57.261 45.000 29.18 8.61 0.00 3.69
1898 2925 3.019799 TGACAAACAAGCTTGGGGTAA 57.980 42.857 29.18 14.56 0.00 2.85
1899 2926 2.955660 TGACAAACAAGCTTGGGGTAAG 59.044 45.455 29.18 14.85 39.49 2.34
1900 2927 2.956333 GACAAACAAGCTTGGGGTAAGT 59.044 45.455 29.18 17.64 38.70 2.24
1901 2928 3.371034 ACAAACAAGCTTGGGGTAAGTT 58.629 40.909 29.18 10.62 38.70 2.66
1902 2929 3.772572 ACAAACAAGCTTGGGGTAAGTTT 59.227 39.130 29.18 15.74 39.99 2.66
1903 2930 4.224147 ACAAACAAGCTTGGGGTAAGTTTT 59.776 37.500 29.18 15.06 37.68 2.43
1904 2931 5.182487 CAAACAAGCTTGGGGTAAGTTTTT 58.818 37.500 29.18 14.39 37.68 1.94
1921 2948 2.730550 TTTTCGGACGGAGGAAGTAC 57.269 50.000 0.00 0.00 0.00 2.73
1922 2949 0.523072 TTTCGGACGGAGGAAGTACG 59.477 55.000 0.00 0.00 46.50 3.67
1928 2955 4.376340 GGACGGAGGAAGTACGATAAAA 57.624 45.455 0.00 0.00 0.00 1.52
1976 3008 7.837202 AAAATTATGTCAACAATGCTCCATG 57.163 32.000 0.00 0.00 0.00 3.66
2070 3106 2.750807 GCCCATTATCATCCTGTGTGCT 60.751 50.000 0.00 0.00 0.00 4.40
2087 3123 2.357009 GTGCTATGATTGGTTGGCAGAG 59.643 50.000 0.00 0.00 0.00 3.35
2106 3146 4.189580 AGGCGGCACACAGGTTGT 62.190 61.111 13.08 0.00 39.97 3.32
2198 3239 2.774439 ACTTGCCAAGCTAAACAACG 57.226 45.000 3.88 0.00 0.00 4.10
2201 3242 0.948678 TGCCAAGCTAAACAACGGAC 59.051 50.000 0.00 0.00 0.00 4.79
2203 3244 0.515564 CCAAGCTAAACAACGGACGG 59.484 55.000 0.00 0.00 0.00 4.79
2209 3250 1.459592 CTAAACAACGGACGGAGCAAG 59.540 52.381 0.00 0.00 0.00 4.01
2210 3251 1.782028 AAACAACGGACGGAGCAAGC 61.782 55.000 0.00 0.00 0.00 4.01
2336 3394 5.897824 TCATGTTTTTAAGTGGGGGTTTGTA 59.102 36.000 0.00 0.00 0.00 2.41
2337 3395 6.555360 TCATGTTTTTAAGTGGGGGTTTGTAT 59.445 34.615 0.00 0.00 0.00 2.29
2363 3421 2.628178 AGAAAGTCCACTGACGTGATCA 59.372 45.455 0.00 0.00 46.51 2.92
2403 3461 9.579932 AGACAGACTCTTGATTCCTTTTAAAAT 57.420 29.630 0.09 0.00 0.00 1.82
2432 3490 3.495806 CCTCTCCTTGTGCTCTCACTTTT 60.496 47.826 0.00 0.00 43.49 2.27
2450 3508 8.243961 TCACTTTTATCAGTCCAAAATCCAAA 57.756 30.769 0.00 0.00 0.00 3.28
2451 3509 8.869109 TCACTTTTATCAGTCCAAAATCCAAAT 58.131 29.630 0.00 0.00 0.00 2.32
2452 3510 9.143631 CACTTTTATCAGTCCAAAATCCAAATC 57.856 33.333 0.00 0.00 0.00 2.17
2544 3608 9.906660 GTATTGACATGGTCATTAAAGTGAAAA 57.093 29.630 0.00 0.00 42.40 2.29
2548 3612 7.232330 TGACATGGTCATTAAAGTGAAAATCCA 59.768 33.333 0.00 0.00 37.67 3.41
2549 3613 8.137745 ACATGGTCATTAAAGTGAAAATCCAT 57.862 30.769 0.00 0.00 33.81 3.41
2550 3614 8.596293 ACATGGTCATTAAAGTGAAAATCCATT 58.404 29.630 0.00 0.00 32.20 3.16
2551 3615 9.439500 CATGGTCATTAAAGTGAAAATCCATTT 57.561 29.630 0.00 0.00 32.20 2.32
2552 3616 8.830201 TGGTCATTAAAGTGAAAATCCATTTG 57.170 30.769 0.00 0.00 0.00 2.32
2553 3617 8.646004 TGGTCATTAAAGTGAAAATCCATTTGA 58.354 29.630 0.00 0.00 0.00 2.69
2554 3618 9.657419 GGTCATTAAAGTGAAAATCCATTTGAT 57.343 29.630 0.00 0.00 34.22 2.57
2576 3640 5.720371 TTTGATCCCAAATGTAGGTTGTG 57.280 39.130 0.00 0.00 37.36 3.33
2577 3641 4.380843 TGATCCCAAATGTAGGTTGTGT 57.619 40.909 0.00 0.00 0.00 3.72
2578 3642 4.331968 TGATCCCAAATGTAGGTTGTGTC 58.668 43.478 0.00 0.00 0.00 3.67
2579 3643 4.042809 TGATCCCAAATGTAGGTTGTGTCT 59.957 41.667 0.00 0.00 0.00 3.41
2580 3644 4.447138 TCCCAAATGTAGGTTGTGTCTT 57.553 40.909 0.00 0.00 0.00 3.01
2581 3645 5.570205 TCCCAAATGTAGGTTGTGTCTTA 57.430 39.130 0.00 0.00 0.00 2.10
2582 3646 6.134535 TCCCAAATGTAGGTTGTGTCTTAT 57.865 37.500 0.00 0.00 0.00 1.73
2583 3647 7.260387 TCCCAAATGTAGGTTGTGTCTTATA 57.740 36.000 0.00 0.00 0.00 0.98
2584 3648 7.867921 TCCCAAATGTAGGTTGTGTCTTATAT 58.132 34.615 0.00 0.00 0.00 0.86
2585 3649 8.333235 TCCCAAATGTAGGTTGTGTCTTATATT 58.667 33.333 0.00 0.00 0.00 1.28
2586 3650 8.405531 CCCAAATGTAGGTTGTGTCTTATATTG 58.594 37.037 0.00 0.00 0.00 1.90
2587 3651 8.405531 CCAAATGTAGGTTGTGTCTTATATTGG 58.594 37.037 0.00 0.00 0.00 3.16
2588 3652 7.568199 AATGTAGGTTGTGTCTTATATTGGC 57.432 36.000 0.00 0.00 0.00 4.52
2589 3653 6.056090 TGTAGGTTGTGTCTTATATTGGCA 57.944 37.500 0.00 0.00 0.00 4.92
2590 3654 6.658849 TGTAGGTTGTGTCTTATATTGGCAT 58.341 36.000 0.00 0.00 0.00 4.40
2591 3655 6.542005 TGTAGGTTGTGTCTTATATTGGCATG 59.458 38.462 0.00 0.00 0.00 4.06
2592 3656 5.754782 AGGTTGTGTCTTATATTGGCATGA 58.245 37.500 0.00 0.00 0.00 3.07
2593 3657 6.367983 AGGTTGTGTCTTATATTGGCATGAT 58.632 36.000 0.00 0.00 0.00 2.45
2594 3658 6.488006 AGGTTGTGTCTTATATTGGCATGATC 59.512 38.462 0.00 0.00 0.00 2.92
2595 3659 6.262944 GGTTGTGTCTTATATTGGCATGATCA 59.737 38.462 0.00 0.00 0.00 2.92
2596 3660 7.201812 GGTTGTGTCTTATATTGGCATGATCAA 60.202 37.037 0.00 0.00 0.00 2.57
2597 3661 8.355169 GTTGTGTCTTATATTGGCATGATCAAT 58.645 33.333 15.65 15.65 38.29 2.57
2598 3662 9.571816 TTGTGTCTTATATTGGCATGATCAATA 57.428 29.630 18.03 18.03 40.15 1.90
2599 3663 9.571816 TGTGTCTTATATTGGCATGATCAATAA 57.428 29.630 19.00 9.80 39.55 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.073222 ACTGAACATTGAGGTTGATTACGAAC 60.073 38.462 0.00 0.00 0.00 3.95
22 23 5.862924 ACTGAACATTGAGGTTGATTACG 57.137 39.130 0.00 0.00 0.00 3.18
23 24 7.626452 GCCTAACTGAACATTGAGGTTGATTAC 60.626 40.741 0.00 0.00 0.00 1.89
78 79 9.366216 GATAATACTATCATTATCAACGCCACA 57.634 33.333 9.79 0.00 43.14 4.17
105 107 5.253330 GACATTTGGAGTAGACCATGGAAA 58.747 41.667 21.47 6.07 39.82 3.13
116 120 5.577945 GGACGTTAATTCGACATTTGGAGTA 59.422 40.000 0.00 0.00 34.70 2.59
185 192 1.199327 TCGAGTCACAGTGAACGATCC 59.801 52.381 22.17 4.66 34.46 3.36
209 216 1.885157 CATGCCTGCATCGGTTGTT 59.115 52.632 0.70 0.00 33.90 2.83
210 217 3.594568 CATGCCTGCATCGGTTGT 58.405 55.556 0.70 0.00 33.90 3.32
274 285 9.579932 GAATTCAATAAGAAGAATAGGATGGGT 57.420 33.333 0.00 0.00 40.15 4.51
275 286 9.578576 TGAATTCAATAAGAAGAATAGGATGGG 57.421 33.333 5.45 0.00 40.15 4.00
376 423 4.872691 CACGAACAATTCAGAGGCTTATCT 59.127 41.667 0.00 0.00 0.00 1.98
377 424 4.034510 CCACGAACAATTCAGAGGCTTATC 59.965 45.833 0.00 0.00 0.00 1.75
378 425 3.941483 CCACGAACAATTCAGAGGCTTAT 59.059 43.478 0.00 0.00 0.00 1.73
379 426 3.244422 ACCACGAACAATTCAGAGGCTTA 60.244 43.478 0.00 0.00 0.00 3.09
382 433 1.197721 CACCACGAACAATTCAGAGGC 59.802 52.381 0.00 0.00 0.00 4.70
506 565 1.068741 GCTTAGAGTATGTGGACGGGG 59.931 57.143 0.00 0.00 0.00 5.73
548 616 1.080025 GACGTCACTGTAGCACCCC 60.080 63.158 11.55 0.00 0.00 4.95
550 618 1.135460 GTAGGACGTCACTGTAGCACC 60.135 57.143 18.91 0.00 0.00 5.01
552 620 1.171308 GGTAGGACGTCACTGTAGCA 58.829 55.000 18.91 0.00 0.00 3.49
593 661 4.340263 GCCGGCTTAATTATAATTAGCGC 58.660 43.478 22.15 21.50 32.87 5.92
594 662 4.493545 CGGCCGGCTTAATTATAATTAGCG 60.494 45.833 28.56 11.40 32.87 4.26
619 803 2.139118 GGTTTGATCTAGCTCATCGGC 58.861 52.381 0.00 0.00 0.00 5.54
621 805 3.320541 AGAGGGTTTGATCTAGCTCATCG 59.679 47.826 0.00 0.00 0.00 3.84
649 848 2.291741 AGCGAGGAGAAAAACAAAGCAG 59.708 45.455 0.00 0.00 0.00 4.24
747 946 2.814341 CACTCTGGCTCTGCTGCG 60.814 66.667 0.00 0.00 0.00 5.18
749 948 0.175302 CTACCACTCTGGCTCTGCTG 59.825 60.000 0.00 0.00 42.67 4.41
750 949 1.612395 GCTACCACTCTGGCTCTGCT 61.612 60.000 0.00 0.00 42.67 4.24
751 950 1.153469 GCTACCACTCTGGCTCTGC 60.153 63.158 0.00 0.00 42.67 4.26
752 951 1.680735 CTAGCTACCACTCTGGCTCTG 59.319 57.143 0.00 0.00 42.67 3.35
753 952 2.026905 GCTAGCTACCACTCTGGCTCT 61.027 57.143 7.70 0.00 42.67 4.09
754 953 0.387565 GCTAGCTACCACTCTGGCTC 59.612 60.000 7.70 0.00 42.67 4.70
755 954 0.032615 AGCTAGCTACCACTCTGGCT 60.033 55.000 17.69 0.00 42.67 4.75
756 955 0.103937 CAGCTAGCTACCACTCTGGC 59.896 60.000 18.86 0.00 42.67 4.85
757 956 1.135915 CACAGCTAGCTACCACTCTGG 59.864 57.143 18.86 4.01 45.02 3.86
864 1098 4.143301 GGAATGGGAGGGGGTGGC 62.143 72.222 0.00 0.00 0.00 5.01
870 1104 2.143419 CGAGGGAGGAATGGGAGGG 61.143 68.421 0.00 0.00 0.00 4.30
876 1110 4.100189 GGGTATATGATCGAGGGAGGAATG 59.900 50.000 0.00 0.00 0.00 2.67
877 1111 4.264850 TGGGTATATGATCGAGGGAGGAAT 60.265 45.833 0.00 0.00 0.00 3.01
878 1112 3.076937 TGGGTATATGATCGAGGGAGGAA 59.923 47.826 0.00 0.00 0.00 3.36
879 1113 2.652857 TGGGTATATGATCGAGGGAGGA 59.347 50.000 0.00 0.00 0.00 3.71
880 1114 2.761208 GTGGGTATATGATCGAGGGAGG 59.239 54.545 0.00 0.00 0.00 4.30
881 1115 3.193691 GTGTGGGTATATGATCGAGGGAG 59.806 52.174 0.00 0.00 0.00 4.30
882 1116 3.162666 GTGTGGGTATATGATCGAGGGA 58.837 50.000 0.00 0.00 0.00 4.20
883 1117 2.233922 GGTGTGGGTATATGATCGAGGG 59.766 54.545 0.00 0.00 0.00 4.30
884 1118 2.094700 CGGTGTGGGTATATGATCGAGG 60.095 54.545 0.00 0.00 0.00 4.63
885 1119 2.557056 ACGGTGTGGGTATATGATCGAG 59.443 50.000 0.00 0.00 0.00 4.04
939 1173 3.311110 GCGGGTCAGGTGGTGAGA 61.311 66.667 0.00 0.00 35.13 3.27
941 1180 3.936203 GTGCGGGTCAGGTGGTGA 61.936 66.667 0.00 0.00 0.00 4.02
959 1198 2.035442 GGTTCTTGGACCGCTCTGC 61.035 63.158 0.00 0.00 0.00 4.26
961 1200 2.593956 GGGGTTCTTGGACCGCTCT 61.594 63.158 7.78 0.00 46.07 4.09
962 1201 2.046217 GGGGTTCTTGGACCGCTC 60.046 66.667 7.78 0.00 46.07 5.03
965 1204 2.033602 GTGGGGGTTCTTGGACCG 59.966 66.667 0.00 0.00 40.75 4.79
966 1205 2.138453 GAGGTGGGGGTTCTTGGACC 62.138 65.000 0.00 0.00 39.04 4.46
967 1206 1.134438 AGAGGTGGGGGTTCTTGGAC 61.134 60.000 0.00 0.00 0.00 4.02
968 1207 0.840722 GAGAGGTGGGGGTTCTTGGA 60.841 60.000 0.00 0.00 0.00 3.53
969 1208 0.842467 AGAGAGGTGGGGGTTCTTGG 60.842 60.000 0.00 0.00 0.00 3.61
970 1209 0.615850 GAGAGAGGTGGGGGTTCTTG 59.384 60.000 0.00 0.00 0.00 3.02
971 1210 0.494095 AGAGAGAGGTGGGGGTTCTT 59.506 55.000 0.00 0.00 0.00 2.52
972 1211 1.007359 GTAGAGAGAGGTGGGGGTTCT 59.993 57.143 0.00 0.00 0.00 3.01
973 1212 1.487300 GTAGAGAGAGGTGGGGGTTC 58.513 60.000 0.00 0.00 0.00 3.62
974 1213 0.042881 GGTAGAGAGAGGTGGGGGTT 59.957 60.000 0.00 0.00 0.00 4.11
975 1214 0.856311 AGGTAGAGAGAGGTGGGGGT 60.856 60.000 0.00 0.00 0.00 4.95
976 1215 0.105913 GAGGTAGAGAGAGGTGGGGG 60.106 65.000 0.00 0.00 0.00 5.40
977 1216 0.930726 AGAGGTAGAGAGAGGTGGGG 59.069 60.000 0.00 0.00 0.00 4.96
978 1217 1.850345 AGAGAGGTAGAGAGAGGTGGG 59.150 57.143 0.00 0.00 0.00 4.61
979 1218 2.507886 TGAGAGAGGTAGAGAGAGGTGG 59.492 54.545 0.00 0.00 0.00 4.61
980 1219 3.924114 TGAGAGAGGTAGAGAGAGGTG 57.076 52.381 0.00 0.00 0.00 4.00
981 1220 3.138283 CCATGAGAGAGGTAGAGAGAGGT 59.862 52.174 0.00 0.00 0.00 3.85
982 1221 3.498481 CCCATGAGAGAGGTAGAGAGAGG 60.498 56.522 0.00 0.00 0.00 3.69
1137 1385 4.802051 CCCGGGTGGTCCAGCATG 62.802 72.222 22.22 13.50 33.07 4.06
1251 1499 1.150081 GAGCATGTCCATGGGGAGG 59.850 63.158 13.02 1.26 46.12 4.30
1392 1640 4.389576 CCGCCGCTGCTGTTGTTC 62.390 66.667 0.00 0.00 34.43 3.18
1618 1872 4.752879 CACCAACCGGCCGATCGT 62.753 66.667 30.73 14.13 34.57 3.73
1705 1959 9.574516 AAAGAAATGGAGAAAAAGAAGCTAGTA 57.425 29.630 0.00 0.00 0.00 1.82
1734 2335 7.050970 TGTAGAGCACTTTACAGAAAAGAGA 57.949 36.000 4.59 0.00 46.44 3.10
1832 2859 0.107081 TGCTTTTTCGGACGAAGGGA 59.893 50.000 7.25 1.65 35.38 4.20
1833 2860 0.237498 GTGCTTTTTCGGACGAAGGG 59.763 55.000 7.25 3.75 35.38 3.95
1834 2861 1.226746 AGTGCTTTTTCGGACGAAGG 58.773 50.000 7.25 4.06 35.38 3.46
1835 2862 4.663636 ATTAGTGCTTTTTCGGACGAAG 57.336 40.909 7.25 0.00 35.38 3.79
1836 2863 5.209240 CAAATTAGTGCTTTTTCGGACGAA 58.791 37.500 2.62 2.62 0.00 3.85
1837 2864 4.319911 CCAAATTAGTGCTTTTTCGGACGA 60.320 41.667 0.00 0.00 0.00 4.20
1838 2865 3.911964 CCAAATTAGTGCTTTTTCGGACG 59.088 43.478 0.00 0.00 0.00 4.79
1839 2866 4.679654 CACCAAATTAGTGCTTTTTCGGAC 59.320 41.667 0.00 0.00 0.00 4.79
1840 2867 4.865776 CACCAAATTAGTGCTTTTTCGGA 58.134 39.130 0.00 0.00 0.00 4.55
1850 2877 6.992123 TGGATGTATCTAGCACCAAATTAGTG 59.008 38.462 4.54 4.54 38.30 2.74
1851 2878 7.136822 TGGATGTATCTAGCACCAAATTAGT 57.863 36.000 0.00 0.00 0.00 2.24
1852 2879 8.627208 AATGGATGTATCTAGCACCAAATTAG 57.373 34.615 0.00 0.00 0.00 1.73
1853 2880 8.849168 CAAATGGATGTATCTAGCACCAAATTA 58.151 33.333 0.00 0.00 0.00 1.40
1854 2881 7.560991 TCAAATGGATGTATCTAGCACCAAATT 59.439 33.333 0.00 0.00 0.00 1.82
1855 2882 7.013655 GTCAAATGGATGTATCTAGCACCAAAT 59.986 37.037 0.00 0.00 0.00 2.32
1856 2883 6.318648 GTCAAATGGATGTATCTAGCACCAAA 59.681 38.462 0.00 0.00 0.00 3.28
1857 2884 5.822519 GTCAAATGGATGTATCTAGCACCAA 59.177 40.000 0.00 0.00 0.00 3.67
1858 2885 5.104569 TGTCAAATGGATGTATCTAGCACCA 60.105 40.000 0.00 0.00 0.00 4.17
1859 2886 5.368145 TGTCAAATGGATGTATCTAGCACC 58.632 41.667 0.00 0.00 0.00 5.01
1860 2887 6.925610 TTGTCAAATGGATGTATCTAGCAC 57.074 37.500 0.00 0.00 0.00 4.40
1861 2888 6.883756 TGTTTGTCAAATGGATGTATCTAGCA 59.116 34.615 0.40 0.00 0.00 3.49
1862 2889 7.320443 TGTTTGTCAAATGGATGTATCTAGC 57.680 36.000 0.40 0.00 0.00 3.42
1863 2890 7.912250 GCTTGTTTGTCAAATGGATGTATCTAG 59.088 37.037 0.40 0.00 35.48 2.43
1864 2891 7.611467 AGCTTGTTTGTCAAATGGATGTATCTA 59.389 33.333 0.40 0.00 35.48 1.98
1865 2892 6.435277 AGCTTGTTTGTCAAATGGATGTATCT 59.565 34.615 0.40 0.00 35.48 1.98
1866 2893 6.624423 AGCTTGTTTGTCAAATGGATGTATC 58.376 36.000 0.40 0.00 35.48 2.24
1867 2894 6.594788 AGCTTGTTTGTCAAATGGATGTAT 57.405 33.333 0.40 0.00 35.48 2.29
1868 2895 6.215121 CAAGCTTGTTTGTCAAATGGATGTA 58.785 36.000 18.65 0.00 35.48 2.29
1869 2896 4.942761 AGCTTGTTTGTCAAATGGATGT 57.057 36.364 0.40 0.00 35.48 3.06
1870 2897 4.449743 CCAAGCTTGTTTGTCAAATGGATG 59.550 41.667 24.35 0.00 36.92 3.51
1871 2898 4.503643 CCCAAGCTTGTTTGTCAAATGGAT 60.504 41.667 24.35 0.00 36.92 3.41
1872 2899 3.181467 CCCAAGCTTGTTTGTCAAATGGA 60.181 43.478 24.35 0.00 36.92 3.41
1873 2900 3.132925 CCCAAGCTTGTTTGTCAAATGG 58.867 45.455 24.35 10.71 35.48 3.16
1874 2901 3.132925 CCCCAAGCTTGTTTGTCAAATG 58.867 45.455 24.35 5.47 35.48 2.32
1875 2902 2.771372 ACCCCAAGCTTGTTTGTCAAAT 59.229 40.909 24.35 0.00 35.48 2.32
1876 2903 2.183679 ACCCCAAGCTTGTTTGTCAAA 58.816 42.857 24.35 0.00 35.48 2.69
1877 2904 1.859302 ACCCCAAGCTTGTTTGTCAA 58.141 45.000 24.35 0.00 34.61 3.18
1878 2905 2.738587 TACCCCAAGCTTGTTTGTCA 57.261 45.000 24.35 2.47 0.00 3.58
1879 2906 2.956333 ACTTACCCCAAGCTTGTTTGTC 59.044 45.455 24.35 0.00 37.83 3.18
1880 2907 3.026707 ACTTACCCCAAGCTTGTTTGT 57.973 42.857 24.35 18.80 37.83 2.83
1881 2908 4.400529 AAACTTACCCCAAGCTTGTTTG 57.599 40.909 24.35 14.33 37.83 2.93
1882 2909 5.429681 AAAAACTTACCCCAAGCTTGTTT 57.570 34.783 24.35 13.36 37.83 2.83
1901 2928 2.607771 CGTACTTCCTCCGTCCGAAAAA 60.608 50.000 0.00 0.00 0.00 1.94
1902 2929 1.068333 CGTACTTCCTCCGTCCGAAAA 60.068 52.381 0.00 0.00 0.00 2.29
1903 2930 0.523072 CGTACTTCCTCCGTCCGAAA 59.477 55.000 0.00 0.00 0.00 3.46
1904 2931 0.321564 TCGTACTTCCTCCGTCCGAA 60.322 55.000 0.00 0.00 0.00 4.30
1905 2932 0.107508 ATCGTACTTCCTCCGTCCGA 60.108 55.000 0.00 0.00 0.00 4.55
1906 2933 1.586422 TATCGTACTTCCTCCGTCCG 58.414 55.000 0.00 0.00 0.00 4.79
1907 2934 4.376340 TTTTATCGTACTTCCTCCGTCC 57.624 45.455 0.00 0.00 0.00 4.79
1928 2955 5.796502 TTGATTAAGGTCCCAGGATCTTT 57.203 39.130 17.14 0.48 42.34 2.52
2049 3082 1.610522 GCACACAGGATGATAATGGGC 59.389 52.381 0.00 0.00 39.69 5.36
2052 3085 7.361799 CCAATCATAGCACACAGGATGATAATG 60.362 40.741 0.00 0.00 37.92 1.90
2070 3106 2.646930 CTGCTCTGCCAACCAATCATA 58.353 47.619 0.00 0.00 0.00 2.15
2106 3146 4.302622 GCATCCAGCTCCTCCCTA 57.697 61.111 0.00 0.00 41.15 3.53
2137 3177 4.574013 CCAGTGCACAAAGATATCTTCCTC 59.426 45.833 21.04 8.73 34.61 3.71
2198 3239 1.751437 AAATAAGGCTTGCTCCGTCC 58.249 50.000 10.69 0.00 0.00 4.79
2201 3242 3.312697 GGACTAAAATAAGGCTTGCTCCG 59.687 47.826 10.69 0.00 0.00 4.63
2203 3244 5.358160 ACATGGACTAAAATAAGGCTTGCTC 59.642 40.000 10.69 0.00 0.00 4.26
2209 3250 4.402474 AGCCAACATGGACTAAAATAAGGC 59.598 41.667 0.00 0.00 40.96 4.35
2210 3251 6.071391 ACAAGCCAACATGGACTAAAATAAGG 60.071 38.462 0.00 0.00 40.96 2.69
2297 3354 6.840780 AAAACATGATTAAGGAAGGACAGG 57.159 37.500 0.00 0.00 0.00 4.00
2336 3394 5.171476 CACGTCAGTGGACTTTCTGATTAT 58.829 41.667 0.00 0.00 44.34 1.28
2337 3395 4.556233 CACGTCAGTGGACTTTCTGATTA 58.444 43.478 0.00 0.00 44.34 1.75
2363 3421 7.430760 AGAGTCTGTCTATAGCTGGAATTTT 57.569 36.000 0.00 0.00 31.71 1.82
2403 3461 2.234908 GAGCACAAGGAGAGGCTCTAAA 59.765 50.000 18.75 0.00 46.95 1.85
2450 3508 4.253685 CTCAACGATACCAACACCAAGAT 58.746 43.478 0.00 0.00 0.00 2.40
2451 3509 3.659786 CTCAACGATACCAACACCAAGA 58.340 45.455 0.00 0.00 0.00 3.02
2452 3510 2.159627 GCTCAACGATACCAACACCAAG 59.840 50.000 0.00 0.00 0.00 3.61
2456 3520 2.157668 CACAGCTCAACGATACCAACAC 59.842 50.000 0.00 0.00 0.00 3.32
2463 3527 4.574892 TGGATTTTCACAGCTCAACGATA 58.425 39.130 0.00 0.00 0.00 2.92
2502 3566 5.047306 TGTCAATACAGGAGACAACCTACAG 60.047 44.000 0.00 0.00 39.15 2.74
2554 3618 5.144100 ACACAACCTACATTTGGGATCAAA 58.856 37.500 0.00 0.00 45.61 2.69
2555 3619 4.735369 ACACAACCTACATTTGGGATCAA 58.265 39.130 0.00 0.00 31.37 2.57
2556 3620 4.042809 AGACACAACCTACATTTGGGATCA 59.957 41.667 0.00 0.00 31.37 2.92
2557 3621 4.589908 AGACACAACCTACATTTGGGATC 58.410 43.478 0.00 0.00 31.37 3.36
2558 3622 4.657814 AGACACAACCTACATTTGGGAT 57.342 40.909 0.00 0.00 31.37 3.85
2559 3623 4.447138 AAGACACAACCTACATTTGGGA 57.553 40.909 0.00 0.00 31.37 4.37
2560 3624 8.405531 CAATATAAGACACAACCTACATTTGGG 58.594 37.037 0.00 0.00 33.27 4.12
2561 3625 8.405531 CCAATATAAGACACAACCTACATTTGG 58.594 37.037 0.00 0.00 0.00 3.28
2562 3626 7.915397 GCCAATATAAGACACAACCTACATTTG 59.085 37.037 0.00 0.00 0.00 2.32
2563 3627 7.613801 TGCCAATATAAGACACAACCTACATTT 59.386 33.333 0.00 0.00 0.00 2.32
2564 3628 7.116075 TGCCAATATAAGACACAACCTACATT 58.884 34.615 0.00 0.00 0.00 2.71
2565 3629 6.658849 TGCCAATATAAGACACAACCTACAT 58.341 36.000 0.00 0.00 0.00 2.29
2566 3630 6.056090 TGCCAATATAAGACACAACCTACA 57.944 37.500 0.00 0.00 0.00 2.74
2567 3631 6.765989 TCATGCCAATATAAGACACAACCTAC 59.234 38.462 0.00 0.00 0.00 3.18
2568 3632 6.894682 TCATGCCAATATAAGACACAACCTA 58.105 36.000 0.00 0.00 0.00 3.08
2569 3633 5.754782 TCATGCCAATATAAGACACAACCT 58.245 37.500 0.00 0.00 0.00 3.50
2570 3634 6.262944 TGATCATGCCAATATAAGACACAACC 59.737 38.462 0.00 0.00 0.00 3.77
2571 3635 7.263100 TGATCATGCCAATATAAGACACAAC 57.737 36.000 0.00 0.00 0.00 3.32
2572 3636 7.878547 TTGATCATGCCAATATAAGACACAA 57.121 32.000 0.00 0.00 0.00 3.33
2573 3637 9.571816 TTATTGATCATGCCAATATAAGACACA 57.428 29.630 16.02 2.77 36.65 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.