Multiple sequence alignment - TraesCS3A01G022900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G022900 chr3A 100.000 7029 0 0 1 7029 12866606 12859578 0.000000e+00 12981.0
1 TraesCS3A01G022900 chr3A 85.750 1193 158 8 4840 6029 12870445 12869262 0.000000e+00 1251.0
2 TraesCS3A01G022900 chr3A 83.649 422 64 4 5030 5450 12867618 12867201 6.610000e-105 392.0
3 TraesCS3A01G022900 chr3A 83.810 210 18 8 3353 3561 12863002 12862808 1.200000e-42 185.0
4 TraesCS3A01G022900 chr3A 83.810 210 18 8 3605 3799 12863254 12863046 1.200000e-42 185.0
5 TraesCS3A01G022900 chr3A 91.228 57 2 3 6382 6437 12860180 12860126 2.720000e-09 75.0
6 TraesCS3A01G022900 chr3A 91.228 57 2 3 6427 6481 12860225 12860170 2.720000e-09 75.0
7 TraesCS3A01G022900 chr3A 100.000 39 0 0 620 658 12865950 12865912 9.780000e-09 73.1
8 TraesCS3A01G022900 chr3A 100.000 39 0 0 657 695 12865987 12865949 9.780000e-09 73.1
9 TraesCS3A01G022900 chr3A 97.222 36 1 0 2713 2748 12863816 12863781 2.120000e-05 62.1
10 TraesCS3A01G022900 chr3A 97.222 36 1 0 2791 2826 12863894 12863859 2.120000e-05 62.1
11 TraesCS3A01G022900 chr3D 91.626 1648 101 22 4551 6186 7410109 7411731 0.000000e+00 2244.0
12 TraesCS3A01G022900 chr3D 90.240 1168 80 18 2943 4099 7407335 7408479 0.000000e+00 1495.0
13 TraesCS3A01G022900 chr3D 85.092 1194 164 11 4840 6029 7339115 7340298 0.000000e+00 1206.0
14 TraesCS3A01G022900 chr3D 90.428 397 24 6 1394 1784 7406559 7406947 1.750000e-140 510.0
15 TraesCS3A01G022900 chr3D 79.218 563 48 33 617 1156 7405737 7406253 1.890000e-85 327.0
16 TraesCS3A01G022900 chr3D 94.059 202 10 2 6823 7022 7414723 7414924 8.860000e-79 305.0
17 TraesCS3A01G022900 chr3D 87.879 198 20 3 3602 3796 7407741 7407937 5.480000e-56 230.0
18 TraesCS3A01G022900 chr3D 85.238 210 17 5 3350 3558 7407981 7408177 3.320000e-48 204.0
19 TraesCS3A01G022900 chr3D 89.506 162 10 4 1804 1964 7406932 7407087 1.550000e-46 198.0
20 TraesCS3A01G022900 chr3D 85.799 169 23 1 4116 4283 378782511 378782679 2.010000e-40 178.0
21 TraesCS3A01G022900 chr3D 89.286 140 14 1 6430 6568 7411832 7411971 2.610000e-39 174.0
22 TraesCS3A01G022900 chr3D 83.168 202 21 9 396 585 7404823 7405023 9.370000e-39 172.0
23 TraesCS3A01G022900 chr3D 84.000 175 26 2 983 1156 7336703 7336876 4.360000e-37 167.0
24 TraesCS3A01G022900 chr3B 92.327 1564 92 9 4570 6111 9407074 9408631 0.000000e+00 2198.0
25 TraesCS3A01G022900 chr3B 89.683 979 60 23 3078 4039 9405979 9406933 0.000000e+00 1210.0
26 TraesCS3A01G022900 chr3B 84.526 1202 172 9 4832 6029 9399432 9400623 0.000000e+00 1177.0
27 TraesCS3A01G022900 chr3B 80.614 619 39 28 1394 1964 9405041 9405626 3.050000e-108 403.0
28 TraesCS3A01G022900 chr3B 77.355 605 42 31 585 1154 9404208 9404752 3.230000e-68 270.0
29 TraesCS3A01G022900 chr3B 86.911 191 18 5 4096 4283 398900200 398900014 2.570000e-49 207.0
30 TraesCS3A01G022900 chr3B 85.354 198 25 3 3602 3796 9406254 9406450 1.200000e-47 202.0
31 TraesCS3A01G022900 chr3B 84.689 209 17 6 3350 3558 9406493 9406686 2.000000e-45 195.0
32 TraesCS3A01G022900 chr3B 85.635 181 16 5 1217 1397 9404841 9405011 1.560000e-41 182.0
33 TraesCS3A01G022900 chr3B 81.538 195 31 4 4096 4287 189507158 189506966 9.440000e-34 156.0
34 TraesCS3A01G022900 chr3B 88.636 88 8 2 6260 6345 771341702 771341789 9.640000e-19 106.0
35 TraesCS3A01G022900 chr3B 87.356 87 9 2 6260 6344 567473600 567473514 1.610000e-16 99.0
36 TraesCS3A01G022900 chr6A 97.215 754 17 3 1966 2717 545836630 545837381 0.000000e+00 1273.0
37 TraesCS3A01G022900 chr6A 89.157 83 7 2 6260 6340 66381600 66381682 1.250000e-17 102.0
38 TraesCS3A01G022900 chr5A 94.562 754 36 3 1968 2717 321013262 321012510 0.000000e+00 1160.0
39 TraesCS3A01G022900 chr5A 91.333 750 62 2 1970 2717 593511096 593510348 0.000000e+00 1022.0
40 TraesCS3A01G022900 chr7A 91.546 757 62 1 1963 2717 19049437 19048681 0.000000e+00 1042.0
41 TraesCS3A01G022900 chr5B 88.533 750 83 2 1970 2717 304649306 304650054 0.000000e+00 905.0
42 TraesCS3A01G022900 chr7B 88.503 748 82 3 1972 2717 536201901 536202646 0.000000e+00 902.0
43 TraesCS3A01G022900 chr7B 87.867 750 85 4 1970 2717 739471787 739472532 0.000000e+00 876.0
44 TraesCS3A01G022900 chr7B 82.812 192 27 5 4096 4283 143257809 143257620 4.360000e-37 167.0
45 TraesCS3A01G022900 chr7B 88.889 90 9 1 6260 6348 368136965 368136876 7.450000e-20 110.0
46 TraesCS3A01G022900 chr7B 84.000 100 10 5 4350 4445 210863478 210863381 2.700000e-14 91.6
47 TraesCS3A01G022900 chr2B 88.165 752 86 3 1968 2717 689146566 689147316 0.000000e+00 893.0
48 TraesCS3A01G022900 chr2B 91.358 81 6 1 6259 6338 10214548 10214468 7.450000e-20 110.0
49 TraesCS3A01G022900 chr4B 87.899 752 88 2 1968 2717 646130535 646131285 0.000000e+00 881.0
50 TraesCS3A01G022900 chr2D 86.667 195 25 1 4096 4289 618178656 618178850 1.540000e-51 215.0
51 TraesCS3A01G022900 chr2D 80.000 160 18 7 4094 4239 647488216 647488057 9.640000e-19 106.0
52 TraesCS3A01G022900 chr6B 85.864 191 26 1 4095 4284 21353761 21353951 1.200000e-47 202.0
53 TraesCS3A01G022900 chr6B 87.234 94 8 4 6254 6344 133697176 133697084 3.470000e-18 104.0
54 TraesCS3A01G022900 chr4D 85.128 195 27 2 4095 4287 490257546 490257740 1.550000e-46 198.0
55 TraesCS3A01G022900 chr4D 89.157 83 8 1 6257 6338 230661389 230661471 1.250000e-17 102.0
56 TraesCS3A01G022900 chr4D 85.393 89 12 1 4350 4438 395380198 395380111 2.700000e-14 91.6
57 TraesCS3A01G022900 chr1A 85.393 178 25 1 4097 4273 515765120 515765297 4.330000e-42 183.0
58 TraesCS3A01G022900 chr1A 86.207 87 8 3 4350 4434 313907353 313907269 2.700000e-14 91.6
59 TraesCS3A01G022900 chr2A 85.030 167 24 1 4116 4281 706227006 706227172 1.210000e-37 169.0
60 TraesCS3A01G022900 chr2A 89.011 91 9 1 6260 6349 722208686 722208596 2.070000e-20 111.0
61 TraesCS3A01G022900 chr2A 82.828 99 14 3 4339 4434 524333391 524333489 1.260000e-12 86.1
62 TraesCS3A01G022900 chr1D 87.778 90 10 1 4347 4435 279101373 279101462 3.470000e-18 104.0
63 TraesCS3A01G022900 chr6D 87.640 89 10 1 4347 4434 90111814 90111902 1.250000e-17 102.0
64 TraesCS3A01G022900 chr4A 89.286 84 6 3 6260 6340 179474304 179474221 1.250000e-17 102.0
65 TraesCS3A01G022900 chr4A 86.207 87 8 3 4350 4434 99032985 99033069 2.700000e-14 91.6
66 TraesCS3A01G022900 chr7D 85.567 97 11 3 4350 4445 234807855 234807761 1.610000e-16 99.0
67 TraesCS3A01G022900 chr5D 84.211 95 14 1 4341 4434 442203718 442203812 2.700000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G022900 chr3A 12859578 12866606 7028 True 12981.000 12981 100.000000 1 7029 1 chr3A.!!$R1 7028
1 TraesCS3A01G022900 chr3A 12860126 12870445 10319 True 243.340 1251 91.391900 620 6481 10 chr3A.!!$R2 5861
2 TraesCS3A01G022900 chr3D 7336703 7340298 3595 False 686.500 1206 84.546000 983 6029 2 chr3D.!!$F2 5046
3 TraesCS3A01G022900 chr3D 7404823 7414924 10101 False 585.900 2244 88.064800 396 7022 10 chr3D.!!$F3 6626
4 TraesCS3A01G022900 chr3B 9399432 9408631 9199 False 729.625 2198 85.022875 585 6111 8 chr3B.!!$F2 5526
5 TraesCS3A01G022900 chr6A 545836630 545837381 751 False 1273.000 1273 97.215000 1966 2717 1 chr6A.!!$F2 751
6 TraesCS3A01G022900 chr5A 321012510 321013262 752 True 1160.000 1160 94.562000 1968 2717 1 chr5A.!!$R1 749
7 TraesCS3A01G022900 chr5A 593510348 593511096 748 True 1022.000 1022 91.333000 1970 2717 1 chr5A.!!$R2 747
8 TraesCS3A01G022900 chr7A 19048681 19049437 756 True 1042.000 1042 91.546000 1963 2717 1 chr7A.!!$R1 754
9 TraesCS3A01G022900 chr5B 304649306 304650054 748 False 905.000 905 88.533000 1970 2717 1 chr5B.!!$F1 747
10 TraesCS3A01G022900 chr7B 536201901 536202646 745 False 902.000 902 88.503000 1972 2717 1 chr7B.!!$F1 745
11 TraesCS3A01G022900 chr7B 739471787 739472532 745 False 876.000 876 87.867000 1970 2717 1 chr7B.!!$F2 747
12 TraesCS3A01G022900 chr2B 689146566 689147316 750 False 893.000 893 88.165000 1968 2717 1 chr2B.!!$F1 749
13 TraesCS3A01G022900 chr4B 646130535 646131285 750 False 881.000 881 87.899000 1968 2717 1 chr4B.!!$F1 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 435 0.027586 AAGCGCGTTTGTCACTGTTC 59.972 50.0 7.61 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
6483 15525 4.925068 AGTTTTCTGATGTGTTTGCTGAC 58.075 39.13 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.803334 TACCAAACAGACATCGCACC 58.197 50.000 0.00 0.00 0.00 5.01
22 23 0.950836 CCAAACAGACATCGCACCAA 59.049 50.000 0.00 0.00 0.00 3.67
23 24 1.069022 CCAAACAGACATCGCACCAAG 60.069 52.381 0.00 0.00 0.00 3.61
24 25 0.593128 AAACAGACATCGCACCAAGC 59.407 50.000 0.00 0.00 40.87 4.01
38 39 3.727970 GCACCAAGCGTAACATCTAAAGC 60.728 47.826 0.00 0.00 0.00 3.51
39 40 3.007635 ACCAAGCGTAACATCTAAAGCC 58.992 45.455 0.00 0.00 0.00 4.35
40 41 3.006940 CCAAGCGTAACATCTAAAGCCA 58.993 45.455 0.00 0.00 0.00 4.75
42 43 3.887621 AGCGTAACATCTAAAGCCAGA 57.112 42.857 0.00 0.00 0.00 3.86
43 44 3.786635 AGCGTAACATCTAAAGCCAGAG 58.213 45.455 0.00 0.00 0.00 3.35
44 45 3.447586 AGCGTAACATCTAAAGCCAGAGA 59.552 43.478 0.00 0.00 0.00 3.10
46 47 4.113354 CGTAACATCTAAAGCCAGAGACC 58.887 47.826 0.00 0.00 0.00 3.85
47 48 3.636153 AACATCTAAAGCCAGAGACCC 57.364 47.619 0.00 0.00 0.00 4.46
49 50 1.123928 ATCTAAAGCCAGAGACCCCG 58.876 55.000 0.00 0.00 0.00 5.73
50 51 0.040646 TCTAAAGCCAGAGACCCCGA 59.959 55.000 0.00 0.00 0.00 5.14
52 53 1.262640 TAAAGCCAGAGACCCCGACC 61.263 60.000 0.00 0.00 0.00 4.79
54 55 3.319198 GCCAGAGACCCCGACCAA 61.319 66.667 0.00 0.00 0.00 3.67
55 56 2.982130 CCAGAGACCCCGACCAAG 59.018 66.667 0.00 0.00 0.00 3.61
57 58 3.003763 AGAGACCCCGACCAAGCC 61.004 66.667 0.00 0.00 0.00 4.35
58 59 3.319198 GAGACCCCGACCAAGCCA 61.319 66.667 0.00 0.00 0.00 4.75
59 60 3.607370 GAGACCCCGACCAAGCCAC 62.607 68.421 0.00 0.00 0.00 5.01
60 61 3.948719 GACCCCGACCAAGCCACA 61.949 66.667 0.00 0.00 0.00 4.17
61 62 3.256960 ACCCCGACCAAGCCACAT 61.257 61.111 0.00 0.00 0.00 3.21
64 65 1.298340 CCCGACCAAGCCACATACA 59.702 57.895 0.00 0.00 0.00 2.29
65 66 0.322098 CCCGACCAAGCCACATACAA 60.322 55.000 0.00 0.00 0.00 2.41
66 67 1.681780 CCCGACCAAGCCACATACAAT 60.682 52.381 0.00 0.00 0.00 2.71
67 68 1.670811 CCGACCAAGCCACATACAATC 59.329 52.381 0.00 0.00 0.00 2.67
68 69 2.355197 CGACCAAGCCACATACAATCA 58.645 47.619 0.00 0.00 0.00 2.57
69 70 2.352651 CGACCAAGCCACATACAATCAG 59.647 50.000 0.00 0.00 0.00 2.90
70 71 3.347216 GACCAAGCCACATACAATCAGT 58.653 45.455 0.00 0.00 0.00 3.41
71 72 3.347216 ACCAAGCCACATACAATCAGTC 58.653 45.455 0.00 0.00 0.00 3.51
73 74 4.012374 CCAAGCCACATACAATCAGTCTT 58.988 43.478 0.00 0.00 0.00 3.01
74 75 4.460382 CCAAGCCACATACAATCAGTCTTT 59.540 41.667 0.00 0.00 0.00 2.52
75 76 5.647658 CCAAGCCACATACAATCAGTCTTTA 59.352 40.000 0.00 0.00 0.00 1.85
76 77 6.319658 CCAAGCCACATACAATCAGTCTTTAT 59.680 38.462 0.00 0.00 0.00 1.40
77 78 6.932356 AGCCACATACAATCAGTCTTTATG 57.068 37.500 0.00 0.00 0.00 1.90
78 79 6.653020 AGCCACATACAATCAGTCTTTATGA 58.347 36.000 0.00 0.00 0.00 2.15
79 80 7.285566 AGCCACATACAATCAGTCTTTATGAT 58.714 34.615 0.00 0.00 39.06 2.45
81 82 7.227314 GCCACATACAATCAGTCTTTATGATGA 59.773 37.037 0.00 0.00 37.46 2.92
82 83 9.281371 CCACATACAATCAGTCTTTATGATGAT 57.719 33.333 0.00 0.00 37.46 2.45
92 93 9.506018 TCAGTCTTTATGATGATTTTCTCAACA 57.494 29.630 0.00 0.00 40.47 3.33
93 94 9.552114 CAGTCTTTATGATGATTTTCTCAACAC 57.448 33.333 0.00 0.00 39.21 3.32
94 95 8.734386 AGTCTTTATGATGATTTTCTCAACACC 58.266 33.333 0.00 0.00 39.21 4.16
95 96 8.514594 GTCTTTATGATGATTTTCTCAACACCA 58.485 33.333 0.00 0.00 39.21 4.17
97 98 9.297586 CTTTATGATGATTTTCTCAACACCATG 57.702 33.333 0.00 0.00 39.21 3.66
98 99 6.845758 ATGATGATTTTCTCAACACCATGT 57.154 33.333 0.00 0.00 39.21 3.21
99 100 7.943079 ATGATGATTTTCTCAACACCATGTA 57.057 32.000 0.00 0.00 39.21 2.29
100 101 7.144722 TGATGATTTTCTCAACACCATGTAC 57.855 36.000 0.00 0.00 37.44 2.90
102 103 4.454161 TGATTTTCTCAACACCATGTACCG 59.546 41.667 0.00 0.00 0.00 4.02
103 104 3.478857 TTTCTCAACACCATGTACCGT 57.521 42.857 0.00 0.00 0.00 4.83
105 106 3.478857 TCTCAACACCATGTACCGTTT 57.521 42.857 0.00 0.00 0.00 3.60
106 107 3.135225 TCTCAACACCATGTACCGTTTG 58.865 45.455 0.00 0.00 0.00 2.93
107 108 3.135225 CTCAACACCATGTACCGTTTGA 58.865 45.455 0.00 0.00 0.00 2.69
109 110 1.504359 ACACCATGTACCGTTTGACG 58.496 50.000 0.00 0.00 42.11 4.35
121 122 3.612472 CGTTTGACGGTGTGGTTTTAT 57.388 42.857 0.00 0.00 38.08 1.40
122 123 3.954999 CGTTTGACGGTGTGGTTTTATT 58.045 40.909 0.00 0.00 38.08 1.40
123 124 4.352887 CGTTTGACGGTGTGGTTTTATTT 58.647 39.130 0.00 0.00 38.08 1.40
124 125 5.508872 CGTTTGACGGTGTGGTTTTATTTA 58.491 37.500 0.00 0.00 38.08 1.40
125 126 6.144175 CGTTTGACGGTGTGGTTTTATTTAT 58.856 36.000 0.00 0.00 38.08 1.40
126 127 7.296660 CGTTTGACGGTGTGGTTTTATTTATA 58.703 34.615 0.00 0.00 38.08 0.98
128 129 9.460906 GTTTGACGGTGTGGTTTTATTTATAAA 57.539 29.630 0.00 0.00 0.00 1.40
130 131 7.306953 TGACGGTGTGGTTTTATTTATAAAGC 58.693 34.615 3.94 1.75 34.13 3.51
131 132 6.316319 ACGGTGTGGTTTTATTTATAAAGCG 58.684 36.000 3.94 0.89 35.24 4.68
135 136 7.148205 GGTGTGGTTTTATTTATAAAGCGGAGA 60.148 37.037 3.94 0.00 35.24 3.71
136 137 7.908601 GTGTGGTTTTATTTATAAAGCGGAGAG 59.091 37.037 3.94 0.00 35.24 3.20
137 138 7.825270 TGTGGTTTTATTTATAAAGCGGAGAGA 59.175 33.333 3.94 0.00 35.24 3.10
138 139 8.671028 GTGGTTTTATTTATAAAGCGGAGAGAA 58.329 33.333 3.94 0.00 35.24 2.87
139 140 9.233649 TGGTTTTATTTATAAAGCGGAGAGAAA 57.766 29.630 3.94 0.00 35.24 2.52
140 141 9.717892 GGTTTTATTTATAAAGCGGAGAGAAAG 57.282 33.333 3.94 0.00 35.24 2.62
141 142 9.222916 GTTTTATTTATAAAGCGGAGAGAAAGC 57.777 33.333 3.94 0.00 34.13 3.51
142 143 7.492352 TTATTTATAAAGCGGAGAGAAAGCC 57.508 36.000 3.94 0.00 0.00 4.35
147 148 4.808649 CGGAGAGAAAGCCGGTAC 57.191 61.111 1.90 0.00 43.67 3.34
148 149 1.141234 CGGAGAGAAAGCCGGTACC 59.859 63.158 1.90 0.16 43.67 3.34
149 150 1.601419 CGGAGAGAAAGCCGGTACCA 61.601 60.000 13.54 0.00 43.67 3.25
150 151 0.611714 GGAGAGAAAGCCGGTACCAA 59.388 55.000 13.54 0.00 0.00 3.67
151 152 1.002773 GGAGAGAAAGCCGGTACCAAA 59.997 52.381 13.54 0.00 0.00 3.28
152 153 2.347731 GAGAGAAAGCCGGTACCAAAG 58.652 52.381 13.54 0.54 0.00 2.77
153 154 1.975680 AGAGAAAGCCGGTACCAAAGA 59.024 47.619 13.54 0.00 0.00 2.52
154 155 2.370849 AGAGAAAGCCGGTACCAAAGAA 59.629 45.455 13.54 0.00 0.00 2.52
155 156 3.143728 GAGAAAGCCGGTACCAAAGAAA 58.856 45.455 13.54 0.00 0.00 2.52
156 157 3.146847 AGAAAGCCGGTACCAAAGAAAG 58.853 45.455 13.54 0.00 0.00 2.62
157 158 2.943036 AAGCCGGTACCAAAGAAAGA 57.057 45.000 13.54 0.00 0.00 2.52
159 160 3.217681 AGCCGGTACCAAAGAAAGAAA 57.782 42.857 13.54 0.00 0.00 2.52
160 161 2.882761 AGCCGGTACCAAAGAAAGAAAC 59.117 45.455 13.54 0.00 0.00 2.78
161 162 2.619646 GCCGGTACCAAAGAAAGAAACA 59.380 45.455 13.54 0.00 0.00 2.83
163 164 3.303526 CCGGTACCAAAGAAAGAAACACG 60.304 47.826 13.54 0.00 0.00 4.49
165 166 3.878699 GGTACCAAAGAAAGAAACACGGA 59.121 43.478 7.15 0.00 0.00 4.69
166 167 4.024302 GGTACCAAAGAAAGAAACACGGAG 60.024 45.833 7.15 0.00 0.00 4.63
169 170 3.380320 CCAAAGAAAGAAACACGGAGGTT 59.620 43.478 0.00 0.00 0.00 3.50
170 171 4.142249 CCAAAGAAAGAAACACGGAGGTTT 60.142 41.667 2.38 2.38 43.30 3.27
171 172 4.632538 AAGAAAGAAACACGGAGGTTTG 57.367 40.909 6.81 0.00 40.85 2.93
172 173 2.949644 AGAAAGAAACACGGAGGTTTGG 59.050 45.455 6.81 0.00 40.85 3.28
173 174 1.029681 AAGAAACACGGAGGTTTGGC 58.970 50.000 6.81 0.00 40.85 4.52
175 176 2.125202 GAAACACGGAGGTTTGGCGG 62.125 60.000 6.81 0.00 40.85 6.13
176 177 2.897172 AAACACGGAGGTTTGGCGGT 62.897 55.000 2.00 0.00 39.40 5.68
177 178 2.042404 AACACGGAGGTTTGGCGGTA 62.042 55.000 0.00 0.00 0.00 4.02
178 179 1.078708 CACGGAGGTTTGGCGGTAT 60.079 57.895 0.00 0.00 0.00 2.73
179 180 1.087771 CACGGAGGTTTGGCGGTATC 61.088 60.000 0.00 0.00 0.00 2.24
180 181 1.262640 ACGGAGGTTTGGCGGTATCT 61.263 55.000 0.00 0.00 0.00 1.98
181 182 0.810031 CGGAGGTTTGGCGGTATCTG 60.810 60.000 0.00 0.00 0.00 2.90
182 183 0.463833 GGAGGTTTGGCGGTATCTGG 60.464 60.000 0.00 0.00 0.00 3.86
183 184 0.463833 GAGGTTTGGCGGTATCTGGG 60.464 60.000 0.00 0.00 0.00 4.45
184 185 2.119029 GGTTTGGCGGTATCTGGGC 61.119 63.158 0.00 0.00 0.00 5.36
186 187 3.352990 TTTGGCGGTATCTGGGCCC 62.353 63.158 17.59 17.59 46.31 5.80
188 189 4.564110 GGCGGTATCTGGGCCCAC 62.564 72.222 24.45 11.66 41.01 4.61
189 190 3.792736 GCGGTATCTGGGCCCACA 61.793 66.667 24.45 12.80 0.00 4.17
190 191 3.120086 GCGGTATCTGGGCCCACAT 62.120 63.158 24.45 20.50 0.00 3.21
192 193 0.819259 CGGTATCTGGGCCCACATTG 60.819 60.000 24.45 12.15 0.00 2.82
193 194 0.468029 GGTATCTGGGCCCACATTGG 60.468 60.000 24.45 11.69 37.25 3.16
202 203 3.453988 CCACATTGGGTTGGCGTT 58.546 55.556 0.00 0.00 32.67 4.84
203 204 1.006337 CCACATTGGGTTGGCGTTG 60.006 57.895 0.00 0.00 32.67 4.10
205 206 1.152652 ACATTGGGTTGGCGTTGGA 60.153 52.632 0.00 0.00 0.00 3.53
206 207 1.178534 ACATTGGGTTGGCGTTGGAG 61.179 55.000 0.00 0.00 0.00 3.86
207 208 0.893270 CATTGGGTTGGCGTTGGAGA 60.893 55.000 0.00 0.00 0.00 3.71
209 210 1.990160 TTGGGTTGGCGTTGGAGAGT 61.990 55.000 0.00 0.00 0.00 3.24
210 211 1.228154 GGGTTGGCGTTGGAGAGTT 60.228 57.895 0.00 0.00 0.00 3.01
211 212 1.515521 GGGTTGGCGTTGGAGAGTTG 61.516 60.000 0.00 0.00 0.00 3.16
212 213 0.534203 GGTTGGCGTTGGAGAGTTGA 60.534 55.000 0.00 0.00 0.00 3.18
213 214 1.523758 GTTGGCGTTGGAGAGTTGAT 58.476 50.000 0.00 0.00 0.00 2.57
215 216 2.672961 TGGCGTTGGAGAGTTGATAG 57.327 50.000 0.00 0.00 0.00 2.08
216 217 1.207089 TGGCGTTGGAGAGTTGATAGG 59.793 52.381 0.00 0.00 0.00 2.57
217 218 1.480954 GGCGTTGGAGAGTTGATAGGA 59.519 52.381 0.00 0.00 0.00 2.94
218 219 2.103263 GGCGTTGGAGAGTTGATAGGAT 59.897 50.000 0.00 0.00 0.00 3.24
219 220 3.321111 GGCGTTGGAGAGTTGATAGGATA 59.679 47.826 0.00 0.00 0.00 2.59
221 222 4.559704 GCGTTGGAGAGTTGATAGGATAGG 60.560 50.000 0.00 0.00 0.00 2.57
222 223 4.827835 CGTTGGAGAGTTGATAGGATAGGA 59.172 45.833 0.00 0.00 0.00 2.94
223 224 5.302059 CGTTGGAGAGTTGATAGGATAGGAA 59.698 44.000 0.00 0.00 0.00 3.36
225 226 6.732896 TGGAGAGTTGATAGGATAGGAAAC 57.267 41.667 0.00 0.00 0.00 2.78
226 227 5.302059 TGGAGAGTTGATAGGATAGGAAACG 59.698 44.000 0.00 0.00 0.00 3.60
228 229 4.649674 AGAGTTGATAGGATAGGAAACGCA 59.350 41.667 0.00 0.00 0.00 5.24
229 230 5.305644 AGAGTTGATAGGATAGGAAACGCAT 59.694 40.000 0.00 0.00 0.00 4.73
230 231 5.930135 AGTTGATAGGATAGGAAACGCATT 58.070 37.500 0.00 0.00 0.00 3.56
231 232 7.015292 AGAGTTGATAGGATAGGAAACGCATTA 59.985 37.037 0.00 0.00 0.00 1.90
233 234 6.665992 TGATAGGATAGGAAACGCATTAGT 57.334 37.500 0.00 0.00 0.00 2.24
235 236 4.073293 AGGATAGGAAACGCATTAGTGG 57.927 45.455 0.00 0.00 0.00 4.00
236 237 3.709653 AGGATAGGAAACGCATTAGTGGA 59.290 43.478 0.00 0.00 0.00 4.02
238 239 4.443034 GGATAGGAAACGCATTAGTGGAGT 60.443 45.833 0.00 0.00 0.00 3.85
239 240 2.699954 AGGAAACGCATTAGTGGAGTG 58.300 47.619 0.00 0.00 0.00 3.51
240 241 1.130561 GGAAACGCATTAGTGGAGTGC 59.869 52.381 0.00 0.00 35.59 4.40
242 243 3.259064 GAAACGCATTAGTGGAGTGCTA 58.741 45.455 0.00 0.00 36.74 3.49
243 244 3.328382 AACGCATTAGTGGAGTGCTAA 57.672 42.857 0.00 0.00 36.74 3.09
244 245 3.543680 ACGCATTAGTGGAGTGCTAAT 57.456 42.857 0.00 0.00 39.07 1.73
246 247 3.118775 ACGCATTAGTGGAGTGCTAATCA 60.119 43.478 0.00 0.00 37.12 2.57
247 248 4.060900 CGCATTAGTGGAGTGCTAATCAT 58.939 43.478 0.00 0.00 37.12 2.45
248 249 4.084171 CGCATTAGTGGAGTGCTAATCATG 60.084 45.833 0.00 0.00 37.12 3.07
249 250 5.059161 GCATTAGTGGAGTGCTAATCATGA 58.941 41.667 0.00 0.00 37.12 3.07
250 251 5.178996 GCATTAGTGGAGTGCTAATCATGAG 59.821 44.000 0.09 0.00 37.12 2.90
251 252 6.519382 CATTAGTGGAGTGCTAATCATGAGA 58.481 40.000 0.09 0.00 37.12 3.27
252 253 4.399004 AGTGGAGTGCTAATCATGAGAC 57.601 45.455 0.09 0.00 0.00 3.36
253 254 3.771479 AGTGGAGTGCTAATCATGAGACA 59.229 43.478 0.09 0.00 0.00 3.41
254 255 4.408270 AGTGGAGTGCTAATCATGAGACAT 59.592 41.667 0.09 0.00 0.00 3.06
255 256 4.510711 GTGGAGTGCTAATCATGAGACATG 59.489 45.833 0.09 5.51 0.00 3.21
256 257 4.063689 GGAGTGCTAATCATGAGACATGG 58.936 47.826 0.09 0.00 0.00 3.66
258 259 3.713248 AGTGCTAATCATGAGACATGGGA 59.287 43.478 0.09 0.00 0.00 4.37
260 261 3.072944 GCTAATCATGAGACATGGGAGC 58.927 50.000 0.09 12.27 0.00 4.70
262 263 3.657398 AATCATGAGACATGGGAGCAA 57.343 42.857 0.09 0.00 0.00 3.91
263 264 2.704464 TCATGAGACATGGGAGCAAG 57.296 50.000 11.04 0.00 0.00 4.01
264 265 1.911357 TCATGAGACATGGGAGCAAGT 59.089 47.619 11.04 0.00 0.00 3.16
265 266 3.106827 TCATGAGACATGGGAGCAAGTA 58.893 45.455 11.04 0.00 0.00 2.24
267 268 2.256306 TGAGACATGGGAGCAAGTACA 58.744 47.619 0.00 0.00 0.00 2.90
268 269 2.234661 TGAGACATGGGAGCAAGTACAG 59.765 50.000 0.00 0.00 0.00 2.74
269 270 1.556911 AGACATGGGAGCAAGTACAGG 59.443 52.381 0.00 0.00 0.00 4.00
271 272 0.254178 CATGGGAGCAAGTACAGGCT 59.746 55.000 10.62 10.62 44.48 4.58
272 273 0.254178 ATGGGAGCAAGTACAGGCTG 59.746 55.000 14.16 14.16 41.22 4.85
273 274 0.835971 TGGGAGCAAGTACAGGCTGA 60.836 55.000 23.66 1.56 41.22 4.26
274 275 0.391793 GGGAGCAAGTACAGGCTGAC 60.392 60.000 23.66 14.63 41.22 3.51
294 295 3.117491 CTGACAGACAGGAACACATGT 57.883 47.619 0.00 0.00 42.39 3.21
295 296 3.470709 CTGACAGACAGGAACACATGTT 58.529 45.455 0.00 0.00 42.39 2.71
296 297 3.879295 CTGACAGACAGGAACACATGTTT 59.121 43.478 0.00 0.00 42.39 2.83
297 298 4.269183 TGACAGACAGGAACACATGTTTT 58.731 39.130 0.00 0.00 38.56 2.43
298 299 4.335315 TGACAGACAGGAACACATGTTTTC 59.665 41.667 15.03 15.03 38.56 2.29
299 300 3.312421 ACAGACAGGAACACATGTTTTCG 59.688 43.478 16.43 8.02 38.56 3.46
301 302 1.002900 ACAGGAACACATGTTTTCGCG 60.003 47.619 16.43 12.61 38.56 5.87
302 303 0.040425 AGGAACACATGTTTTCGCGC 60.040 50.000 16.43 0.00 38.56 6.86
303 304 0.317436 GGAACACATGTTTTCGCGCA 60.317 50.000 16.43 0.00 38.56 6.09
305 306 2.413502 GGAACACATGTTTTCGCGCATA 60.414 45.455 16.43 0.00 38.56 3.14
306 307 3.425404 GAACACATGTTTTCGCGCATAT 58.575 40.909 8.75 0.00 38.56 1.78
308 309 2.223249 ACACATGTTTTCGCGCATATCC 60.223 45.455 8.75 0.00 0.00 2.59
310 311 0.951558 ATGTTTTCGCGCATATCCCC 59.048 50.000 8.75 0.00 0.00 4.81
311 312 0.107410 TGTTTTCGCGCATATCCCCT 60.107 50.000 8.75 0.00 0.00 4.79
313 314 0.878523 TTTTCGCGCATATCCCCTCG 60.879 55.000 8.75 0.00 0.00 4.63
314 315 3.858868 TTCGCGCATATCCCCTCGC 62.859 63.158 8.75 0.00 43.62 5.03
318 319 3.626924 GCATATCCCCTCGCCGGT 61.627 66.667 1.90 0.00 0.00 5.28
319 320 3.148084 CATATCCCCTCGCCGGTT 58.852 61.111 1.90 0.00 0.00 4.44
320 321 1.301716 CATATCCCCTCGCCGGTTG 60.302 63.158 1.90 0.00 0.00 3.77
321 322 2.516888 ATATCCCCTCGCCGGTTGG 61.517 63.158 1.90 2.64 38.77 3.77
331 332 3.187058 CCGGTTGGCCAAATCTCG 58.813 61.111 22.47 20.04 34.09 4.04
334 335 2.332654 GGTTGGCCAAATCTCGCGT 61.333 57.895 22.47 0.00 34.09 6.01
335 336 1.022451 GGTTGGCCAAATCTCGCGTA 61.022 55.000 22.47 0.00 34.09 4.42
337 338 0.248012 TTGGCCAAATCTCGCGTAGA 59.752 50.000 17.98 8.43 39.02 2.59
338 339 0.459585 TGGCCAAATCTCGCGTAGAC 60.460 55.000 0.61 0.00 36.93 2.59
342 343 2.550978 CCAAATCTCGCGTAGACCATT 58.449 47.619 5.77 2.24 36.93 3.16
343 344 3.713288 CCAAATCTCGCGTAGACCATTA 58.287 45.455 5.77 0.00 36.93 1.90
346 347 0.659427 TCTCGCGTAGACCATTACGG 59.341 55.000 5.77 0.00 44.86 4.02
347 348 0.659427 CTCGCGTAGACCATTACGGA 59.341 55.000 5.77 3.21 44.86 4.69
348 349 0.378257 TCGCGTAGACCATTACGGAC 59.622 55.000 5.77 0.00 44.86 4.79
350 351 0.457035 GCGTAGACCATTACGGACCA 59.543 55.000 7.56 0.00 44.86 4.02
351 352 1.068127 GCGTAGACCATTACGGACCAT 59.932 52.381 7.56 0.00 44.86 3.55
352 353 2.739292 CGTAGACCATTACGGACCATG 58.261 52.381 0.00 0.00 41.93 3.66
353 354 2.100252 CGTAGACCATTACGGACCATGT 59.900 50.000 0.00 0.00 41.93 3.21
355 356 3.814005 AGACCATTACGGACCATGTAC 57.186 47.619 0.00 0.00 38.63 2.90
356 357 2.100252 AGACCATTACGGACCATGTACG 59.900 50.000 0.00 0.00 46.43 3.67
357 358 1.137479 ACCATTACGGACCATGTACGG 59.863 52.381 3.66 0.10 45.14 4.02
358 359 1.409790 CCATTACGGACCATGTACGGA 59.590 52.381 3.66 0.00 45.14 4.69
359 360 2.036733 CCATTACGGACCATGTACGGAT 59.963 50.000 3.66 0.00 45.14 4.18
361 362 3.441496 TTACGGACCATGTACGGATTC 57.559 47.619 3.66 0.00 45.14 2.52
362 363 1.481871 ACGGACCATGTACGGATTCT 58.518 50.000 3.66 0.00 45.14 2.40
364 365 1.407618 CGGACCATGTACGGATTCTCA 59.592 52.381 0.00 0.00 36.07 3.27
365 366 2.035961 CGGACCATGTACGGATTCTCAT 59.964 50.000 0.00 0.00 36.07 2.90
366 367 3.492656 CGGACCATGTACGGATTCTCATT 60.493 47.826 0.00 0.00 36.07 2.57
367 368 4.451900 GGACCATGTACGGATTCTCATTT 58.548 43.478 0.00 0.00 0.00 2.32
368 369 4.511826 GGACCATGTACGGATTCTCATTTC 59.488 45.833 0.00 0.00 0.00 2.17
369 370 5.359194 ACCATGTACGGATTCTCATTTCT 57.641 39.130 0.00 0.00 0.00 2.52
370 371 5.118990 ACCATGTACGGATTCTCATTTCTG 58.881 41.667 0.00 0.00 0.00 3.02
371 372 5.118990 CCATGTACGGATTCTCATTTCTGT 58.881 41.667 0.00 0.00 35.66 3.41
372 373 5.586243 CCATGTACGGATTCTCATTTCTGTT 59.414 40.000 0.00 0.00 33.60 3.16
374 375 5.789521 TGTACGGATTCTCATTTCTGTTCA 58.210 37.500 0.00 0.00 33.60 3.18
375 376 6.406370 TGTACGGATTCTCATTTCTGTTCAT 58.594 36.000 0.00 0.00 33.60 2.57
376 377 5.808042 ACGGATTCTCATTTCTGTTCATG 57.192 39.130 0.00 0.00 0.00 3.07
377 378 5.491070 ACGGATTCTCATTTCTGTTCATGA 58.509 37.500 0.00 0.00 0.00 3.07
380 381 5.884792 GGATTCTCATTTCTGTTCATGAGGT 59.115 40.000 8.85 0.12 44.55 3.85
382 383 4.836825 TCTCATTTCTGTTCATGAGGTCC 58.163 43.478 8.85 0.00 44.55 4.46
383 384 3.944015 CTCATTTCTGTTCATGAGGTCCC 59.056 47.826 0.00 0.00 41.89 4.46
384 385 3.588842 TCATTTCTGTTCATGAGGTCCCT 59.411 43.478 0.00 0.00 0.00 4.20
385 386 3.703001 TTTCTGTTCATGAGGTCCCTC 57.297 47.619 6.38 6.38 43.01 4.30
386 387 1.573108 TCTGTTCATGAGGTCCCTCC 58.427 55.000 10.77 0.00 42.09 4.30
434 435 0.027586 AAGCGCGTTTGTCACTGTTC 59.972 50.000 7.61 0.00 0.00 3.18
445 446 3.088532 TGTCACTGTTCCTTTTTGCACT 58.911 40.909 0.00 0.00 0.00 4.40
446 447 3.509575 TGTCACTGTTCCTTTTTGCACTT 59.490 39.130 0.00 0.00 0.00 3.16
455 456 3.003275 TCCTTTTTGCACTTGTGATCGAC 59.997 43.478 4.79 0.00 0.00 4.20
549 562 3.300765 GTGGAGTCACGGTCGGGT 61.301 66.667 0.00 0.00 33.87 5.28
567 580 1.614413 GGTTGGTTGAGACTCGAGAGT 59.386 52.381 21.68 5.31 45.84 3.24
585 598 4.042884 AGAGTGAGATGAATGATTGGGGA 58.957 43.478 0.00 0.00 0.00 4.81
586 599 4.102838 AGAGTGAGATGAATGATTGGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
587 600 3.784763 AGTGAGATGAATGATTGGGGAGT 59.215 43.478 0.00 0.00 0.00 3.85
588 601 4.229123 AGTGAGATGAATGATTGGGGAGTT 59.771 41.667 0.00 0.00 0.00 3.01
589 602 5.429762 AGTGAGATGAATGATTGGGGAGTTA 59.570 40.000 0.00 0.00 0.00 2.24
591 604 6.774656 GTGAGATGAATGATTGGGGAGTTAAT 59.225 38.462 0.00 0.00 0.00 1.40
593 606 7.286087 TGAGATGAATGATTGGGGAGTTAATTG 59.714 37.037 0.00 0.00 0.00 2.32
595 608 5.271598 TGAATGATTGGGGAGTTAATTGCT 58.728 37.500 0.00 0.00 0.00 3.91
596 609 5.127519 TGAATGATTGGGGAGTTAATTGCTG 59.872 40.000 0.00 0.00 0.00 4.41
597 610 2.760092 TGATTGGGGAGTTAATTGCTGC 59.240 45.455 0.00 0.00 0.00 5.25
598 611 2.603075 TTGGGGAGTTAATTGCTGCT 57.397 45.000 0.00 0.00 0.00 4.24
600 613 1.635487 TGGGGAGTTAATTGCTGCTCT 59.365 47.619 0.00 0.00 0.00 4.09
601 614 2.019984 GGGGAGTTAATTGCTGCTCTG 58.980 52.381 0.00 0.00 0.00 3.35
602 615 1.403323 GGGAGTTAATTGCTGCTCTGC 59.597 52.381 0.00 0.00 0.00 4.26
603 616 2.086869 GGAGTTAATTGCTGCTCTGCA 58.913 47.619 0.00 0.00 41.65 4.41
604 617 2.686915 GGAGTTAATTGCTGCTCTGCAT 59.313 45.455 0.00 0.00 42.96 3.96
606 619 3.349927 AGTTAATTGCTGCTCTGCATCA 58.650 40.909 0.00 0.00 42.96 3.07
607 620 3.760151 AGTTAATTGCTGCTCTGCATCAA 59.240 39.130 10.49 10.49 46.09 2.57
608 621 2.941453 AATTGCTGCTCTGCATCAAG 57.059 45.000 12.97 0.00 45.43 3.02
609 622 0.456221 ATTGCTGCTCTGCATCAAGC 59.544 50.000 12.97 8.50 45.43 4.01
611 624 3.099438 CTGCTCTGCATCAAGCCG 58.901 61.111 11.89 3.85 44.83 5.52
613 626 2.823147 GCTCTGCATCAAGCCGCT 60.823 61.111 4.91 0.00 44.83 5.52
614 627 2.821688 GCTCTGCATCAAGCCGCTC 61.822 63.158 0.00 0.00 44.83 5.03
615 628 2.510012 TCTGCATCAAGCCGCTCG 60.510 61.111 0.00 0.00 44.83 5.03
616 629 3.570638 CTGCATCAAGCCGCTCGG 61.571 66.667 3.56 3.56 44.83 4.63
617 630 4.393155 TGCATCAAGCCGCTCGGT 62.393 61.111 10.24 0.00 44.83 4.69
618 631 3.127533 GCATCAAGCCGCTCGGTT 61.128 61.111 10.24 0.33 37.23 4.44
880 7386 0.393132 GCTACCTGGCTTTCTCCCAC 60.393 60.000 0.00 0.00 0.00 4.61
896 7410 3.260297 ACCCCATGTGAACCAGCA 58.740 55.556 0.00 0.00 0.00 4.41
897 7411 1.075482 ACCCCATGTGAACCAGCAG 59.925 57.895 0.00 0.00 0.00 4.24
898 7412 2.345760 CCCCATGTGAACCAGCAGC 61.346 63.158 0.00 0.00 0.00 5.25
6483 15525 0.462225 CTGGATGCAGGCAGAGTCAG 60.462 60.000 6.28 1.51 0.00 3.51
6484 15526 1.196766 TGGATGCAGGCAGAGTCAGT 61.197 55.000 0.00 0.00 0.00 3.41
6502 15544 4.035558 GTCAGTCAGCAAACACATCAGAAA 59.964 41.667 0.00 0.00 0.00 2.52
6503 15545 4.639755 TCAGTCAGCAAACACATCAGAAAA 59.360 37.500 0.00 0.00 0.00 2.29
6504 15546 4.736793 CAGTCAGCAAACACATCAGAAAAC 59.263 41.667 0.00 0.00 0.00 2.43
6505 15547 4.641989 AGTCAGCAAACACATCAGAAAACT 59.358 37.500 0.00 0.00 0.00 2.66
6543 15585 1.414550 AGATCTTCCGGGAGCTTAAGC 59.585 52.381 20.09 20.09 42.49 3.09
6568 15610 3.365535 CCCCAAAGGCCTTGAACG 58.634 61.111 21.33 8.12 37.17 3.95
6570 15612 1.244019 CCCCAAAGGCCTTGAACGAG 61.244 60.000 21.33 5.02 37.17 4.18
6580 15706 1.071605 CTTGAACGAGAAGGCTTCGG 58.928 55.000 20.78 18.35 34.02 4.30
6583 15709 2.781595 GAACGAGAAGGCTTCGGGCA 62.782 60.000 20.78 0.00 44.01 5.36
6590 15716 2.597510 GGCTTCGGGCAACACCTT 60.598 61.111 3.98 0.00 44.01 3.50
6591 15717 2.626780 GGCTTCGGGCAACACCTTC 61.627 63.158 3.98 0.00 44.01 3.46
6598 15724 1.177401 GGGCAACACCTTCTTGATCC 58.823 55.000 0.00 0.00 39.10 3.36
6600 15726 2.519013 GGCAACACCTTCTTGATCCTT 58.481 47.619 0.00 0.00 34.51 3.36
6602 15728 3.691609 GGCAACACCTTCTTGATCCTTAG 59.308 47.826 0.00 0.00 34.51 2.18
6608 15735 2.422093 CCTTCTTGATCCTTAGCACCCC 60.422 54.545 0.00 0.00 0.00 4.95
6618 15745 2.290960 CCTTAGCACCCCAGCTTTAGTT 60.291 50.000 0.00 0.00 43.70 2.24
6632 15759 5.177696 CAGCTTTAGTTACGCTTCTGTCTTT 59.822 40.000 0.00 0.00 0.00 2.52
6635 15762 3.113260 AGTTACGCTTCTGTCTTTGCT 57.887 42.857 0.00 0.00 0.00 3.91
6661 15788 7.643569 TTTCTGCAATATGCTCCAAGATTTA 57.356 32.000 3.78 0.00 45.31 1.40
6668 15795 9.316730 GCAATATGCTCCAAGATTTAAAAATCA 57.683 29.630 15.76 0.00 42.51 2.57
6685 15816 7.736447 AAAAATCAAACACAGAAAACCACAA 57.264 28.000 0.00 0.00 0.00 3.33
6706 15837 9.135189 CCACAAAAGATGGATCATTAGGAAATA 57.865 33.333 0.00 0.00 39.87 1.40
6724 15855 6.027749 GGAAATATTCGATCAAAACAAGCGT 58.972 36.000 0.00 0.00 0.00 5.07
6732 15863 6.664515 TCGATCAAAACAAGCGTTATTTCTT 58.335 32.000 0.00 0.00 33.99 2.52
6746 15877 6.143278 GCGTTATTTCTTGTTTTTCGGATTGT 59.857 34.615 0.00 0.00 0.00 2.71
6758 15889 7.068103 TGTTTTTCGGATTGTCCAGCATATATT 59.932 33.333 0.00 0.00 35.91 1.28
6759 15890 6.558771 TTTCGGATTGTCCAGCATATATTG 57.441 37.500 0.00 0.00 35.91 1.90
6761 15892 3.127548 CGGATTGTCCAGCATATATTGGC 59.872 47.826 0.00 0.00 35.91 4.52
6764 15895 1.075374 TGTCCAGCATATATTGGCCCC 59.925 52.381 0.00 0.00 34.38 5.80
6765 15896 0.704076 TCCAGCATATATTGGCCCCC 59.296 55.000 0.00 0.00 34.38 5.40
6781 15925 1.069935 CCCCTTCTAAGCGCTAGGC 59.930 63.158 12.05 0.00 44.05 3.93
6793 15937 2.407428 GCTAGGCGGCTTTGGTTCC 61.407 63.158 19.76 0.00 0.00 3.62
6799 15943 1.530323 GCGGCTTTGGTTCCTAAGAA 58.470 50.000 15.00 0.00 0.00 2.52
6800 15944 1.883926 GCGGCTTTGGTTCCTAAGAAA 59.116 47.619 15.00 0.00 32.58 2.52
6801 15945 2.095212 GCGGCTTTGGTTCCTAAGAAAG 60.095 50.000 15.00 6.23 32.58 2.62
6817 15961 5.810080 AAGAAAGGAGTACAACTAGCACT 57.190 39.130 0.00 0.00 0.00 4.40
6819 15963 5.081032 AGAAAGGAGTACAACTAGCACTCT 58.919 41.667 11.78 0.00 40.00 3.24
6821 15965 6.893005 AGAAAGGAGTACAACTAGCACTCTAT 59.107 38.462 11.78 2.63 40.00 1.98
6827 18367 8.240682 GGAGTACAACTAGCACTCTATCATATG 58.759 40.741 11.78 0.00 40.00 1.78
6836 18376 4.757149 GCACTCTATCATATGTGAAACCCC 59.243 45.833 1.90 0.00 38.01 4.95
6846 18386 2.609515 TGTGAAACCCCATCAGGTGGT 61.610 52.381 0.00 0.00 40.05 4.16
6876 18417 3.583806 TCAAAAGCACAACAACCACTTG 58.416 40.909 0.00 0.00 0.00 3.16
6904 18445 6.665992 AATGTTGGTACTAAGAGTCACTCA 57.334 37.500 7.77 0.00 32.06 3.41
6948 18490 5.116882 AGACACACCAAAAACTCAGTAGAC 58.883 41.667 0.00 0.00 0.00 2.59
6951 18493 4.876107 CACACCAAAAACTCAGTAGACAGT 59.124 41.667 0.00 0.00 0.00 3.55
6959 18501 9.477484 CAAAAACTCAGTAGACAGTATAACACT 57.523 33.333 0.00 0.00 38.32 3.55
6982 18524 8.815189 CACTATGTTATGAGTTCTGAGAACATG 58.185 37.037 25.45 11.85 37.87 3.21
7022 18564 3.181461 GCTAGCTACCATGTCACATCCTT 60.181 47.826 7.70 0.00 0.00 3.36
7023 18565 3.272574 AGCTACCATGTCACATCCTTG 57.727 47.619 0.00 0.00 0.00 3.61
7024 18566 2.092753 AGCTACCATGTCACATCCTTGG 60.093 50.000 0.00 0.00 34.27 3.61
7025 18567 2.356125 GCTACCATGTCACATCCTTGGT 60.356 50.000 6.08 6.08 41.60 3.67
7026 18568 3.118408 GCTACCATGTCACATCCTTGGTA 60.118 47.826 7.62 7.62 39.97 3.25
7027 18569 3.350219 ACCATGTCACATCCTTGGTAC 57.650 47.619 0.00 0.00 38.26 3.34
7028 18570 2.279741 CCATGTCACATCCTTGGTACG 58.720 52.381 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.179032 TGGTGCGATGTCTGTTTGGT 60.179 50.000 0.00 0.00 0.00 3.67
4 5 1.664016 GCTTGGTGCGATGTCTGTTTG 60.664 52.381 0.00 0.00 0.00 2.93
5 6 0.593128 GCTTGGTGCGATGTCTGTTT 59.407 50.000 0.00 0.00 0.00 2.83
17 18 3.181510 GGCTTTAGATGTTACGCTTGGTG 60.182 47.826 0.00 0.00 0.00 4.17
18 19 3.007635 GGCTTTAGATGTTACGCTTGGT 58.992 45.455 0.00 0.00 0.00 3.67
19 20 3.006940 TGGCTTTAGATGTTACGCTTGG 58.993 45.455 0.00 0.00 0.00 3.61
20 21 3.932710 TCTGGCTTTAGATGTTACGCTTG 59.067 43.478 0.00 0.00 0.00 4.01
22 23 3.447586 TCTCTGGCTTTAGATGTTACGCT 59.552 43.478 0.00 0.00 0.00 5.07
23 24 3.552294 GTCTCTGGCTTTAGATGTTACGC 59.448 47.826 0.00 0.00 0.00 4.42
24 25 4.113354 GGTCTCTGGCTTTAGATGTTACG 58.887 47.826 0.00 0.00 0.00 3.18
27 28 2.239907 GGGGTCTCTGGCTTTAGATGTT 59.760 50.000 0.00 0.00 0.00 2.71
28 29 1.840635 GGGGTCTCTGGCTTTAGATGT 59.159 52.381 0.00 0.00 0.00 3.06
29 30 1.202580 CGGGGTCTCTGGCTTTAGATG 60.203 57.143 0.00 0.00 0.00 2.90
30 31 1.123928 CGGGGTCTCTGGCTTTAGAT 58.876 55.000 0.00 0.00 0.00 1.98
31 32 0.040646 TCGGGGTCTCTGGCTTTAGA 59.959 55.000 0.00 0.00 0.00 2.10
33 34 1.262640 GGTCGGGGTCTCTGGCTTTA 61.263 60.000 0.00 0.00 0.00 1.85
35 36 3.003763 GGTCGGGGTCTCTGGCTT 61.004 66.667 0.00 0.00 0.00 4.35
36 37 3.846405 TTGGTCGGGGTCTCTGGCT 62.846 63.158 0.00 0.00 0.00 4.75
38 39 2.982130 CTTGGTCGGGGTCTCTGG 59.018 66.667 0.00 0.00 0.00 3.86
39 40 2.266055 GCTTGGTCGGGGTCTCTG 59.734 66.667 0.00 0.00 0.00 3.35
40 41 3.003763 GGCTTGGTCGGGGTCTCT 61.004 66.667 0.00 0.00 0.00 3.10
42 43 3.637273 GTGGCTTGGTCGGGGTCT 61.637 66.667 0.00 0.00 0.00 3.85
43 44 1.906105 TATGTGGCTTGGTCGGGGTC 61.906 60.000 0.00 0.00 0.00 4.46
44 45 1.921346 TATGTGGCTTGGTCGGGGT 60.921 57.895 0.00 0.00 0.00 4.95
46 47 0.322098 TTGTATGTGGCTTGGTCGGG 60.322 55.000 0.00 0.00 0.00 5.14
47 48 1.670811 GATTGTATGTGGCTTGGTCGG 59.329 52.381 0.00 0.00 0.00 4.79
49 50 3.347216 ACTGATTGTATGTGGCTTGGTC 58.653 45.455 0.00 0.00 0.00 4.02
50 51 3.009473 AGACTGATTGTATGTGGCTTGGT 59.991 43.478 0.00 0.00 0.00 3.67
52 53 5.633830 AAAGACTGATTGTATGTGGCTTG 57.366 39.130 0.00 0.00 0.00 4.01
54 55 6.653020 TCATAAAGACTGATTGTATGTGGCT 58.347 36.000 0.00 0.00 0.00 4.75
55 56 6.925610 TCATAAAGACTGATTGTATGTGGC 57.074 37.500 0.00 0.00 0.00 5.01
66 67 9.506018 TGTTGAGAAAATCATCATAAAGACTGA 57.494 29.630 0.00 0.00 37.89 3.41
67 68 9.552114 GTGTTGAGAAAATCATCATAAAGACTG 57.448 33.333 0.00 0.00 39.28 3.51
68 69 8.734386 GGTGTTGAGAAAATCATCATAAAGACT 58.266 33.333 0.00 0.00 39.28 3.24
69 70 8.514594 TGGTGTTGAGAAAATCATCATAAAGAC 58.485 33.333 0.00 0.00 39.28 3.01
70 71 8.634335 TGGTGTTGAGAAAATCATCATAAAGA 57.366 30.769 0.00 0.00 39.28 2.52
71 72 9.297586 CATGGTGTTGAGAAAATCATCATAAAG 57.702 33.333 0.00 0.00 39.28 1.85
73 74 8.352137 ACATGGTGTTGAGAAAATCATCATAA 57.648 30.769 0.00 0.00 39.28 1.90
74 75 7.943079 ACATGGTGTTGAGAAAATCATCATA 57.057 32.000 0.00 0.00 39.28 2.15
75 76 6.845758 ACATGGTGTTGAGAAAATCATCAT 57.154 33.333 0.00 0.00 39.28 2.45
76 77 6.150976 GGTACATGGTGTTGAGAAAATCATCA 59.849 38.462 0.00 0.00 37.89 3.07
77 78 6.555315 GGTACATGGTGTTGAGAAAATCATC 58.445 40.000 0.00 0.00 37.89 2.92
78 79 5.123820 CGGTACATGGTGTTGAGAAAATCAT 59.876 40.000 0.00 0.00 37.89 2.45
79 80 4.454161 CGGTACATGGTGTTGAGAAAATCA 59.546 41.667 0.00 0.00 35.62 2.57
81 82 4.394729 ACGGTACATGGTGTTGAGAAAAT 58.605 39.130 0.00 0.00 0.00 1.82
82 83 3.811083 ACGGTACATGGTGTTGAGAAAA 58.189 40.909 0.00 0.00 0.00 2.29
83 84 3.478857 ACGGTACATGGTGTTGAGAAA 57.521 42.857 0.00 0.00 0.00 2.52
84 85 3.478857 AACGGTACATGGTGTTGAGAA 57.521 42.857 0.00 0.00 0.00 2.87
85 86 3.135225 CAAACGGTACATGGTGTTGAGA 58.865 45.455 0.00 0.00 0.00 3.27
86 87 3.059188 GTCAAACGGTACATGGTGTTGAG 60.059 47.826 0.00 0.00 0.00 3.02
87 88 2.873472 GTCAAACGGTACATGGTGTTGA 59.127 45.455 0.00 0.00 0.00 3.18
88 89 2.349060 CGTCAAACGGTACATGGTGTTG 60.349 50.000 0.00 0.00 38.08 3.33
89 90 1.868498 CGTCAAACGGTACATGGTGTT 59.132 47.619 0.00 0.00 38.08 3.32
90 91 1.504359 CGTCAAACGGTACATGGTGT 58.496 50.000 0.00 0.00 38.08 4.16
102 103 9.460906 TTTATAAATAAAACCACACCGTCAAAC 57.539 29.630 0.00 0.00 29.93 2.93
103 104 9.680315 CTTTATAAATAAAACCACACCGTCAAA 57.320 29.630 0.00 0.00 32.39 2.69
105 106 7.306953 GCTTTATAAATAAAACCACACCGTCA 58.693 34.615 0.00 0.00 32.39 4.35
106 107 6.466730 CGCTTTATAAATAAAACCACACCGTC 59.533 38.462 0.00 0.00 32.39 4.79
107 108 6.316319 CGCTTTATAAATAAAACCACACCGT 58.684 36.000 0.00 0.00 32.39 4.83
109 110 6.854778 TCCGCTTTATAAATAAAACCACACC 58.145 36.000 0.00 0.00 32.39 4.16
110 111 7.754625 TCTCCGCTTTATAAATAAAACCACAC 58.245 34.615 0.00 0.00 32.39 3.82
111 112 7.825270 TCTCTCCGCTTTATAAATAAAACCACA 59.175 33.333 0.00 0.00 32.39 4.17
114 115 9.717892 CTTTCTCTCCGCTTTATAAATAAAACC 57.282 33.333 0.00 0.00 32.39 3.27
115 116 9.222916 GCTTTCTCTCCGCTTTATAAATAAAAC 57.777 33.333 0.00 0.00 32.39 2.43
116 117 8.403236 GGCTTTCTCTCCGCTTTATAAATAAAA 58.597 33.333 0.00 0.00 32.39 1.52
117 118 7.254658 CGGCTTTCTCTCCGCTTTATAAATAAA 60.255 37.037 0.00 0.00 39.14 1.40
118 119 6.202188 CGGCTTTCTCTCCGCTTTATAAATAA 59.798 38.462 0.00 0.00 39.14 1.40
119 120 5.694910 CGGCTTTCTCTCCGCTTTATAAATA 59.305 40.000 0.00 0.00 39.14 1.40
120 121 4.511826 CGGCTTTCTCTCCGCTTTATAAAT 59.488 41.667 0.00 0.00 39.14 1.40
121 122 3.869246 CGGCTTTCTCTCCGCTTTATAAA 59.131 43.478 0.00 0.00 39.14 1.40
122 123 3.454375 CGGCTTTCTCTCCGCTTTATAA 58.546 45.455 0.00 0.00 39.14 0.98
123 124 2.223971 CCGGCTTTCTCTCCGCTTTATA 60.224 50.000 0.00 0.00 44.01 0.98
124 125 1.473434 CCGGCTTTCTCTCCGCTTTAT 60.473 52.381 0.00 0.00 44.01 1.40
125 126 0.108329 CCGGCTTTCTCTCCGCTTTA 60.108 55.000 0.00 0.00 44.01 1.85
126 127 1.376037 CCGGCTTTCTCTCCGCTTT 60.376 57.895 0.00 0.00 44.01 3.51
128 129 1.681327 TACCGGCTTTCTCTCCGCT 60.681 57.895 0.00 0.00 44.01 5.52
130 131 1.141234 GGTACCGGCTTTCTCTCCG 59.859 63.158 0.00 0.00 44.89 4.63
131 132 0.611714 TTGGTACCGGCTTTCTCTCC 59.388 55.000 7.57 0.00 0.00 3.71
135 136 2.943036 TTCTTTGGTACCGGCTTTCT 57.057 45.000 7.57 0.00 0.00 2.52
136 137 3.143728 TCTTTCTTTGGTACCGGCTTTC 58.856 45.455 7.57 0.00 0.00 2.62
137 138 3.217681 TCTTTCTTTGGTACCGGCTTT 57.782 42.857 7.57 0.00 0.00 3.51
138 139 2.943036 TCTTTCTTTGGTACCGGCTT 57.057 45.000 7.57 0.00 0.00 4.35
139 140 2.882761 GTTTCTTTCTTTGGTACCGGCT 59.117 45.455 7.57 0.00 0.00 5.52
140 141 2.619646 TGTTTCTTTCTTTGGTACCGGC 59.380 45.455 7.57 0.00 0.00 6.13
141 142 3.303526 CGTGTTTCTTTCTTTGGTACCGG 60.304 47.826 7.57 0.00 0.00 5.28
142 143 3.303526 CCGTGTTTCTTTCTTTGGTACCG 60.304 47.826 7.57 0.00 0.00 4.02
145 146 4.131596 CCTCCGTGTTTCTTTCTTTGGTA 58.868 43.478 0.00 0.00 0.00 3.25
147 148 2.949644 ACCTCCGTGTTTCTTTCTTTGG 59.050 45.455 0.00 0.00 0.00 3.28
148 149 4.632538 AACCTCCGTGTTTCTTTCTTTG 57.367 40.909 0.00 0.00 0.00 2.77
149 150 4.142249 CCAAACCTCCGTGTTTCTTTCTTT 60.142 41.667 0.00 0.00 36.33 2.52
150 151 3.380320 CCAAACCTCCGTGTTTCTTTCTT 59.620 43.478 0.00 0.00 36.33 2.52
151 152 2.949644 CCAAACCTCCGTGTTTCTTTCT 59.050 45.455 0.00 0.00 36.33 2.52
152 153 2.543031 GCCAAACCTCCGTGTTTCTTTC 60.543 50.000 0.00 0.00 36.33 2.62
153 154 1.407618 GCCAAACCTCCGTGTTTCTTT 59.592 47.619 0.00 0.00 36.33 2.52
154 155 1.029681 GCCAAACCTCCGTGTTTCTT 58.970 50.000 0.00 0.00 36.33 2.52
155 156 1.164041 CGCCAAACCTCCGTGTTTCT 61.164 55.000 0.00 0.00 36.33 2.52
156 157 1.281656 CGCCAAACCTCCGTGTTTC 59.718 57.895 0.00 0.00 36.33 2.78
157 158 2.190841 CCGCCAAACCTCCGTGTTT 61.191 57.895 0.00 0.00 38.95 2.83
159 160 1.833787 ATACCGCCAAACCTCCGTGT 61.834 55.000 0.00 0.00 0.00 4.49
160 161 1.078708 ATACCGCCAAACCTCCGTG 60.079 57.895 0.00 0.00 0.00 4.94
161 162 1.219935 GATACCGCCAAACCTCCGT 59.780 57.895 0.00 0.00 0.00 4.69
163 164 0.463833 CCAGATACCGCCAAACCTCC 60.464 60.000 0.00 0.00 0.00 4.30
165 166 1.607612 CCCAGATACCGCCAAACCT 59.392 57.895 0.00 0.00 0.00 3.50
166 167 2.119029 GCCCAGATACCGCCAAACC 61.119 63.158 0.00 0.00 0.00 3.27
169 170 3.804329 GGGCCCAGATACCGCCAA 61.804 66.667 19.95 0.00 44.90 4.52
171 172 4.564110 GTGGGCCCAGATACCGCC 62.564 72.222 29.55 6.91 42.23 6.13
172 173 2.624674 AATGTGGGCCCAGATACCGC 62.625 60.000 33.27 16.82 35.40 5.68
173 174 0.819259 CAATGTGGGCCCAGATACCG 60.819 60.000 33.27 20.73 29.41 4.02
175 176 3.116091 CCAATGTGGGCCCAGATAC 57.884 57.895 33.27 18.76 32.67 2.24
186 187 1.006337 CCAACGCCAACCCAATGTG 60.006 57.895 0.00 0.00 0.00 3.21
187 188 1.152652 TCCAACGCCAACCCAATGT 60.153 52.632 0.00 0.00 0.00 2.71
188 189 0.893270 TCTCCAACGCCAACCCAATG 60.893 55.000 0.00 0.00 0.00 2.82
189 190 0.609131 CTCTCCAACGCCAACCCAAT 60.609 55.000 0.00 0.00 0.00 3.16
190 191 1.228124 CTCTCCAACGCCAACCCAA 60.228 57.895 0.00 0.00 0.00 4.12
192 193 1.228154 AACTCTCCAACGCCAACCC 60.228 57.895 0.00 0.00 0.00 4.11
193 194 0.534203 TCAACTCTCCAACGCCAACC 60.534 55.000 0.00 0.00 0.00 3.77
194 195 1.523758 ATCAACTCTCCAACGCCAAC 58.476 50.000 0.00 0.00 0.00 3.77
195 196 2.354704 CCTATCAACTCTCCAACGCCAA 60.355 50.000 0.00 0.00 0.00 4.52
196 197 1.207089 CCTATCAACTCTCCAACGCCA 59.793 52.381 0.00 0.00 0.00 5.69
197 198 1.480954 TCCTATCAACTCTCCAACGCC 59.519 52.381 0.00 0.00 0.00 5.68
199 200 4.827835 TCCTATCCTATCAACTCTCCAACG 59.172 45.833 0.00 0.00 0.00 4.10
200 201 6.732896 TTCCTATCCTATCAACTCTCCAAC 57.267 41.667 0.00 0.00 0.00 3.77
201 202 6.183360 CGTTTCCTATCCTATCAACTCTCCAA 60.183 42.308 0.00 0.00 0.00 3.53
202 203 5.302059 CGTTTCCTATCCTATCAACTCTCCA 59.698 44.000 0.00 0.00 0.00 3.86
203 204 5.774630 CGTTTCCTATCCTATCAACTCTCC 58.225 45.833 0.00 0.00 0.00 3.71
205 206 4.649674 TGCGTTTCCTATCCTATCAACTCT 59.350 41.667 0.00 0.00 0.00 3.24
206 207 4.945246 TGCGTTTCCTATCCTATCAACTC 58.055 43.478 0.00 0.00 0.00 3.01
207 208 5.552870 ATGCGTTTCCTATCCTATCAACT 57.447 39.130 0.00 0.00 0.00 3.16
209 210 6.929049 CACTAATGCGTTTCCTATCCTATCAA 59.071 38.462 0.00 0.00 0.00 2.57
210 211 6.455647 CACTAATGCGTTTCCTATCCTATCA 58.544 40.000 0.00 0.00 0.00 2.15
211 212 5.869888 CCACTAATGCGTTTCCTATCCTATC 59.130 44.000 0.00 0.00 0.00 2.08
212 213 5.542635 TCCACTAATGCGTTTCCTATCCTAT 59.457 40.000 0.00 0.00 0.00 2.57
213 214 4.897076 TCCACTAATGCGTTTCCTATCCTA 59.103 41.667 0.00 0.00 0.00 2.94
215 216 4.058817 CTCCACTAATGCGTTTCCTATCC 58.941 47.826 0.00 0.00 0.00 2.59
216 217 4.508124 CACTCCACTAATGCGTTTCCTATC 59.492 45.833 0.00 0.00 0.00 2.08
217 218 4.442706 CACTCCACTAATGCGTTTCCTAT 58.557 43.478 0.00 0.00 0.00 2.57
218 219 3.857052 CACTCCACTAATGCGTTTCCTA 58.143 45.455 0.00 0.00 0.00 2.94
219 220 2.699954 CACTCCACTAATGCGTTTCCT 58.300 47.619 0.00 0.00 0.00 3.36
221 222 2.076863 AGCACTCCACTAATGCGTTTC 58.923 47.619 0.00 0.00 44.25 2.78
222 223 2.185004 AGCACTCCACTAATGCGTTT 57.815 45.000 0.00 0.00 44.25 3.60
223 224 3.328382 TTAGCACTCCACTAATGCGTT 57.672 42.857 0.00 0.00 44.25 4.84
225 226 3.457234 TGATTAGCACTCCACTAATGCG 58.543 45.455 0.99 0.00 44.25 4.73
226 227 5.059161 TCATGATTAGCACTCCACTAATGC 58.941 41.667 0.00 0.00 39.77 3.56
228 229 6.098838 TGTCTCATGATTAGCACTCCACTAAT 59.901 38.462 0.00 0.00 41.80 1.73
229 230 5.422012 TGTCTCATGATTAGCACTCCACTAA 59.578 40.000 0.00 0.00 34.29 2.24
230 231 4.956075 TGTCTCATGATTAGCACTCCACTA 59.044 41.667 0.00 0.00 0.00 2.74
231 232 3.771479 TGTCTCATGATTAGCACTCCACT 59.229 43.478 0.00 0.00 0.00 4.00
233 234 4.443881 CCATGTCTCATGATTAGCACTCCA 60.444 45.833 10.75 0.00 0.00 3.86
235 236 4.063689 CCCATGTCTCATGATTAGCACTC 58.936 47.826 10.75 0.00 0.00 3.51
236 237 3.713248 TCCCATGTCTCATGATTAGCACT 59.287 43.478 10.75 0.00 0.00 4.40
238 239 3.495629 GCTCCCATGTCTCATGATTAGCA 60.496 47.826 10.75 0.00 0.00 3.49
239 240 3.072944 GCTCCCATGTCTCATGATTAGC 58.927 50.000 10.75 11.31 0.00 3.09
240 241 4.347360 TGCTCCCATGTCTCATGATTAG 57.653 45.455 10.75 6.49 0.00 1.73
242 243 3.053842 ACTTGCTCCCATGTCTCATGATT 60.054 43.478 10.75 0.00 0.00 2.57
243 244 2.508716 ACTTGCTCCCATGTCTCATGAT 59.491 45.455 10.75 0.00 0.00 2.45
244 245 1.911357 ACTTGCTCCCATGTCTCATGA 59.089 47.619 10.75 0.00 0.00 3.07
246 247 2.840038 TGTACTTGCTCCCATGTCTCAT 59.160 45.455 0.00 0.00 32.34 2.90
247 248 2.234661 CTGTACTTGCTCCCATGTCTCA 59.765 50.000 0.00 0.00 32.34 3.27
248 249 2.419297 CCTGTACTTGCTCCCATGTCTC 60.419 54.545 0.00 0.00 32.34 3.36
249 250 1.556911 CCTGTACTTGCTCCCATGTCT 59.443 52.381 0.00 0.00 32.34 3.41
250 251 2.014068 GCCTGTACTTGCTCCCATGTC 61.014 57.143 0.00 0.00 32.34 3.06
251 252 0.035056 GCCTGTACTTGCTCCCATGT 60.035 55.000 0.00 0.00 34.23 3.21
252 253 0.254178 AGCCTGTACTTGCTCCCATG 59.746 55.000 4.17 0.00 30.33 3.66
253 254 0.254178 CAGCCTGTACTTGCTCCCAT 59.746 55.000 6.72 0.00 35.12 4.00
254 255 0.835971 TCAGCCTGTACTTGCTCCCA 60.836 55.000 6.72 0.00 35.12 4.37
255 256 0.391793 GTCAGCCTGTACTTGCTCCC 60.392 60.000 6.72 0.00 35.12 4.30
256 257 0.610687 AGTCAGCCTGTACTTGCTCC 59.389 55.000 6.72 2.25 35.12 4.70
258 259 1.001406 GTCAGTCAGCCTGTACTTGCT 59.999 52.381 4.17 4.17 42.19 3.91
260 261 2.297315 TCTGTCAGTCAGCCTGTACTTG 59.703 50.000 0.00 0.00 43.32 3.16
262 263 1.889829 GTCTGTCAGTCAGCCTGTACT 59.110 52.381 0.00 0.00 43.32 2.73
263 264 1.613925 TGTCTGTCAGTCAGCCTGTAC 59.386 52.381 0.00 0.00 43.32 2.90
264 265 1.889170 CTGTCTGTCAGTCAGCCTGTA 59.111 52.381 13.10 0.00 43.32 2.74
265 266 0.678395 CTGTCTGTCAGTCAGCCTGT 59.322 55.000 13.10 0.00 43.32 4.00
267 268 0.178950 TCCTGTCTGTCAGTCAGCCT 60.179 55.000 18.39 0.00 43.32 4.58
268 269 0.681733 TTCCTGTCTGTCAGTCAGCC 59.318 55.000 18.39 0.00 43.32 4.85
269 270 1.069204 TGTTCCTGTCTGTCAGTCAGC 59.931 52.381 18.39 8.35 43.32 4.26
271 272 2.107366 TGTGTTCCTGTCTGTCAGTCA 58.893 47.619 0.00 0.00 42.19 3.41
272 273 2.890808 TGTGTTCCTGTCTGTCAGTC 57.109 50.000 0.00 0.00 42.19 3.51
273 274 2.435805 ACATGTGTTCCTGTCTGTCAGT 59.564 45.455 0.00 0.00 42.19 3.41
274 275 3.117491 ACATGTGTTCCTGTCTGTCAG 57.883 47.619 0.00 0.00 43.27 3.51
276 277 4.552767 CGAAAACATGTGTTCCTGTCTGTC 60.553 45.833 20.73 0.00 37.25 3.51
277 278 3.312421 CGAAAACATGTGTTCCTGTCTGT 59.688 43.478 20.73 0.00 37.25 3.41
279 280 2.290641 GCGAAAACATGTGTTCCTGTCT 59.709 45.455 20.73 0.00 37.25 3.41
280 281 2.650608 GCGAAAACATGTGTTCCTGTC 58.349 47.619 20.73 6.28 37.25 3.51
281 282 1.002900 CGCGAAAACATGTGTTCCTGT 60.003 47.619 20.73 0.00 37.25 4.00
283 284 0.040425 GCGCGAAAACATGTGTTCCT 60.040 50.000 20.73 0.00 37.25 3.36
285 286 1.685302 ATGCGCGAAAACATGTGTTC 58.315 45.000 17.49 17.49 37.25 3.18
286 287 2.979401 TATGCGCGAAAACATGTGTT 57.021 40.000 12.10 0.00 40.50 3.32
287 288 2.223249 GGATATGCGCGAAAACATGTGT 60.223 45.455 12.10 0.00 0.00 3.72
289 290 1.333619 GGGATATGCGCGAAAACATGT 59.666 47.619 12.10 1.02 0.00 3.21
290 291 1.334960 GGGGATATGCGCGAAAACATG 60.335 52.381 12.10 0.00 0.00 3.21
292 293 0.107410 AGGGGATATGCGCGAAAACA 60.107 50.000 12.10 0.00 0.00 2.83
293 294 0.586802 GAGGGGATATGCGCGAAAAC 59.413 55.000 12.10 0.00 0.00 2.43
294 295 0.878523 CGAGGGGATATGCGCGAAAA 60.879 55.000 12.10 0.00 0.00 2.29
295 296 1.300620 CGAGGGGATATGCGCGAAA 60.301 57.895 12.10 0.00 0.00 3.46
296 297 2.338620 CGAGGGGATATGCGCGAA 59.661 61.111 12.10 0.00 0.00 4.70
297 298 4.357947 GCGAGGGGATATGCGCGA 62.358 66.667 12.10 0.00 40.06 5.87
301 302 3.178540 AACCGGCGAGGGGATATGC 62.179 63.158 9.30 0.00 46.96 3.14
302 303 1.301716 CAACCGGCGAGGGGATATG 60.302 63.158 9.30 0.00 46.96 1.78
303 304 2.516888 CCAACCGGCGAGGGGATAT 61.517 63.158 9.30 0.00 46.96 1.63
314 315 3.051392 GCGAGATTTGGCCAACCGG 62.051 63.158 20.35 11.46 39.70 5.28
316 317 1.022451 TACGCGAGATTTGGCCAACC 61.022 55.000 20.35 13.41 0.00 3.77
318 319 0.248012 TCTACGCGAGATTTGGCCAA 59.752 50.000 16.05 16.05 0.00 4.52
319 320 0.459585 GTCTACGCGAGATTTGGCCA 60.460 55.000 15.93 0.00 36.29 5.36
320 321 1.152383 GGTCTACGCGAGATTTGGCC 61.152 60.000 15.93 0.00 36.29 5.36
321 322 0.459585 TGGTCTACGCGAGATTTGGC 60.460 55.000 15.93 0.00 36.29 4.52
322 323 2.225068 ATGGTCTACGCGAGATTTGG 57.775 50.000 15.93 0.00 36.29 3.28
324 325 3.369385 CGTAATGGTCTACGCGAGATTT 58.631 45.455 15.93 9.25 38.35 2.17
325 326 2.287427 CCGTAATGGTCTACGCGAGATT 60.287 50.000 15.93 5.70 42.63 2.40
326 327 1.266175 CCGTAATGGTCTACGCGAGAT 59.734 52.381 15.93 0.00 42.63 2.75
327 328 0.659427 CCGTAATGGTCTACGCGAGA 59.341 55.000 15.93 8.82 42.63 4.04
328 329 0.659427 TCCGTAATGGTCTACGCGAG 59.341 55.000 15.93 6.12 42.63 5.03
330 331 0.593263 GGTCCGTAATGGTCTACGCG 60.593 60.000 3.53 3.53 42.63 6.01
331 332 0.457035 TGGTCCGTAATGGTCTACGC 59.543 55.000 0.00 0.00 42.63 4.42
334 335 3.316029 CGTACATGGTCCGTAATGGTCTA 59.684 47.826 0.00 0.00 39.52 2.59
335 336 2.100252 CGTACATGGTCCGTAATGGTCT 59.900 50.000 0.00 0.00 39.52 3.85
337 338 1.137479 CCGTACATGGTCCGTAATGGT 59.863 52.381 0.00 0.00 39.52 3.55
338 339 1.409790 TCCGTACATGGTCCGTAATGG 59.590 52.381 0.00 0.00 40.09 3.16
342 343 2.620115 GAGAATCCGTACATGGTCCGTA 59.380 50.000 0.00 0.00 0.00 4.02
343 344 1.407979 GAGAATCCGTACATGGTCCGT 59.592 52.381 0.00 0.00 0.00 4.69
346 347 5.235186 CAGAAATGAGAATCCGTACATGGTC 59.765 44.000 0.00 0.00 0.00 4.02
347 348 5.118990 CAGAAATGAGAATCCGTACATGGT 58.881 41.667 0.00 0.00 0.00 3.55
348 349 5.118990 ACAGAAATGAGAATCCGTACATGG 58.881 41.667 0.00 0.00 0.00 3.66
350 351 6.406370 TGAACAGAAATGAGAATCCGTACAT 58.594 36.000 0.00 0.00 0.00 2.29
351 352 5.789521 TGAACAGAAATGAGAATCCGTACA 58.210 37.500 0.00 0.00 0.00 2.90
352 353 6.535150 TCATGAACAGAAATGAGAATCCGTAC 59.465 38.462 0.00 0.00 0.00 3.67
353 354 6.639563 TCATGAACAGAAATGAGAATCCGTA 58.360 36.000 0.00 0.00 0.00 4.02
361 362 3.944015 GGGACCTCATGAACAGAAATGAG 59.056 47.826 0.00 5.82 46.20 2.90
362 363 3.588842 AGGGACCTCATGAACAGAAATGA 59.411 43.478 0.00 0.00 0.00 2.57
364 365 3.054065 GGAGGGACCTCATGAACAGAAAT 60.054 47.826 19.30 0.00 44.40 2.17
365 366 2.305927 GGAGGGACCTCATGAACAGAAA 59.694 50.000 19.30 0.00 44.40 2.52
366 367 1.909302 GGAGGGACCTCATGAACAGAA 59.091 52.381 19.30 0.00 44.40 3.02
367 368 1.573108 GGAGGGACCTCATGAACAGA 58.427 55.000 19.30 0.00 44.40 3.41
383 384 2.151502 TAGGAAGCTCACCTCAGGAG 57.848 55.000 14.43 0.00 38.76 3.69
384 385 2.623418 TTAGGAAGCTCACCTCAGGA 57.377 50.000 14.43 0.00 38.76 3.86
385 386 3.922171 AATTAGGAAGCTCACCTCAGG 57.078 47.619 14.43 0.00 38.76 3.86
386 387 4.394300 CACAAATTAGGAAGCTCACCTCAG 59.606 45.833 14.43 5.86 38.76 3.35
387 388 4.326826 CACAAATTAGGAAGCTCACCTCA 58.673 43.478 14.43 6.06 38.76 3.86
388 389 3.127721 GCACAAATTAGGAAGCTCACCTC 59.872 47.826 14.43 0.00 38.76 3.85
389 390 3.084786 GCACAAATTAGGAAGCTCACCT 58.915 45.455 15.19 15.19 41.05 4.00
390 391 3.084786 AGCACAAATTAGGAAGCTCACC 58.915 45.455 2.14 2.14 0.00 4.02
391 392 4.695455 TGTAGCACAAATTAGGAAGCTCAC 59.305 41.667 0.00 0.00 33.83 3.51
392 393 4.905429 TGTAGCACAAATTAGGAAGCTCA 58.095 39.130 0.00 0.00 33.83 4.26
394 395 5.335976 GCTTTGTAGCACAAATTAGGAAGCT 60.336 40.000 12.68 0.00 45.79 3.74
418 419 0.655733 AAGGAACAGTGACAAACGCG 59.344 50.000 3.53 3.53 0.00 6.01
419 420 2.844122 AAAGGAACAGTGACAAACGC 57.156 45.000 0.00 0.00 0.00 4.84
423 424 3.509575 AGTGCAAAAAGGAACAGTGACAA 59.490 39.130 0.00 0.00 0.00 3.18
434 435 3.003689 AGTCGATCACAAGTGCAAAAAGG 59.996 43.478 0.00 0.00 0.00 3.11
445 446 0.109272 GACCAGCGAGTCGATCACAA 60.109 55.000 18.61 0.00 0.00 3.33
446 447 1.506718 GACCAGCGAGTCGATCACA 59.493 57.895 18.61 0.00 0.00 3.58
498 500 9.754382 ACGTGTCTGTCTTTCTTTTATTTAGTA 57.246 29.630 0.00 0.00 0.00 1.82
499 501 8.658499 ACGTGTCTGTCTTTCTTTTATTTAGT 57.342 30.769 0.00 0.00 0.00 2.24
502 504 7.638683 CGAAACGTGTCTGTCTTTCTTTTATTT 59.361 33.333 3.82 0.00 0.00 1.40
514 519 0.593263 ACCGACGAAACGTGTCTGTC 60.593 55.000 16.08 16.08 41.37 3.51
516 521 1.545614 CCACCGACGAAACGTGTCTG 61.546 60.000 3.82 0.14 41.37 3.51
549 562 2.554462 CTCACTCTCGAGTCTCAACCAA 59.446 50.000 13.13 0.00 40.20 3.67
567 580 4.868172 AACTCCCCAATCATTCATCTCA 57.132 40.909 0.00 0.00 0.00 3.27
593 606 2.799371 GGCTTGATGCAGAGCAGC 59.201 61.111 17.78 10.57 45.81 5.25
595 608 3.129502 GCGGCTTGATGCAGAGCA 61.130 61.111 17.78 0.00 45.15 4.26
596 609 2.821688 GAGCGGCTTGATGCAGAGC 61.822 63.158 2.97 10.17 45.15 4.09
597 610 2.523507 CGAGCGGCTTGATGCAGAG 61.524 63.158 11.99 0.00 45.15 3.35
598 611 2.510012 CGAGCGGCTTGATGCAGA 60.510 61.111 11.99 0.00 45.15 4.26
600 613 3.899981 AACCGAGCGGCTTGATGCA 62.900 57.895 18.86 0.00 45.15 3.96
601 614 3.127533 AACCGAGCGGCTTGATGC 61.128 61.111 18.86 0.00 39.32 3.91
602 615 2.753966 CCAACCGAGCGGCTTGATG 61.754 63.158 18.86 15.46 39.32 3.07
603 616 2.436646 CCAACCGAGCGGCTTGAT 60.437 61.111 18.86 0.00 39.32 2.57
604 617 4.697756 CCCAACCGAGCGGCTTGA 62.698 66.667 18.86 0.00 39.32 3.02
606 619 4.265056 AACCCAACCGAGCGGCTT 62.265 61.111 9.14 0.05 39.32 4.35
611 624 2.983592 CACCCAACCCAACCGAGC 60.984 66.667 0.00 0.00 0.00 5.03
613 626 1.493854 ATAGCACCCAACCCAACCGA 61.494 55.000 0.00 0.00 0.00 4.69
614 627 1.001393 ATAGCACCCAACCCAACCG 60.001 57.895 0.00 0.00 0.00 4.44
615 628 0.251608 ACATAGCACCCAACCCAACC 60.252 55.000 0.00 0.00 0.00 3.77
616 629 0.887933 CACATAGCACCCAACCCAAC 59.112 55.000 0.00 0.00 0.00 3.77
617 630 0.897863 GCACATAGCACCCAACCCAA 60.898 55.000 0.00 0.00 44.79 4.12
618 631 1.304052 GCACATAGCACCCAACCCA 60.304 57.895 0.00 0.00 44.79 4.51
619 632 3.603365 GCACATAGCACCCAACCC 58.397 61.111 0.00 0.00 44.79 4.11
880 7386 2.345760 GCTGCTGGTTCACATGGGG 61.346 63.158 0.00 0.00 0.00 4.96
6483 15525 4.925068 AGTTTTCTGATGTGTTTGCTGAC 58.075 39.130 0.00 0.00 0.00 3.51
6562 15604 0.320421 CCCGAAGCCTTCTCGTTCAA 60.320 55.000 2.49 0.00 0.00 2.69
6568 15610 1.302511 TGTTGCCCGAAGCCTTCTC 60.303 57.895 2.49 0.00 42.71 2.87
6570 15612 2.626780 GGTGTTGCCCGAAGCCTTC 61.627 63.158 0.00 0.00 42.71 3.46
6580 15706 2.206576 AGGATCAAGAAGGTGTTGCC 57.793 50.000 0.00 0.00 37.58 4.52
6583 15709 4.327680 GTGCTAAGGATCAAGAAGGTGTT 58.672 43.478 0.00 0.00 0.00 3.32
6590 15716 1.839994 CTGGGGTGCTAAGGATCAAGA 59.160 52.381 0.00 0.00 0.00 3.02
6591 15717 1.748591 GCTGGGGTGCTAAGGATCAAG 60.749 57.143 0.00 0.00 0.00 3.02
6598 15724 2.789409 ACTAAAGCTGGGGTGCTAAG 57.211 50.000 0.00 0.00 43.24 2.18
6600 15726 2.093869 CGTAACTAAAGCTGGGGTGCTA 60.094 50.000 0.00 0.00 43.24 3.49
6602 15728 1.084289 CGTAACTAAAGCTGGGGTGC 58.916 55.000 0.00 0.00 0.00 5.01
6608 15735 4.238514 AGACAGAAGCGTAACTAAAGCTG 58.761 43.478 0.00 0.00 41.53 4.24
6618 15745 4.574828 AGAAAAAGCAAAGACAGAAGCGTA 59.425 37.500 0.00 0.00 0.00 4.42
6661 15788 7.736447 TTGTGGTTTTCTGTGTTTGATTTTT 57.264 28.000 0.00 0.00 0.00 1.94
6668 15795 5.874261 CCATCTTTTGTGGTTTTCTGTGTTT 59.126 36.000 0.00 0.00 31.96 2.83
6669 15796 5.186797 TCCATCTTTTGTGGTTTTCTGTGTT 59.813 36.000 0.00 0.00 37.96 3.32
6706 15837 7.305474 AGAAATAACGCTTGTTTTGATCGAAT 58.695 30.769 0.00 0.00 37.02 3.34
6724 15855 7.717568 TGGACAATCCGAAAAACAAGAAATAA 58.282 30.769 0.00 0.00 40.17 1.40
6732 15863 2.302260 TGCTGGACAATCCGAAAAACA 58.698 42.857 0.00 0.00 40.17 2.83
6740 15871 3.445096 GGCCAATATATGCTGGACAATCC 59.555 47.826 7.52 0.00 40.83 3.01
6746 15877 0.704076 GGGGGCCAATATATGCTGGA 59.296 55.000 4.39 0.00 34.35 3.86
6764 15895 4.760757 GCCTAGCGCTTAGAAGGG 57.239 61.111 22.33 13.35 41.45 3.95
6775 15906 2.407428 GGAACCAAAGCCGCCTAGC 61.407 63.158 0.00 0.00 0.00 3.42
6781 15925 3.831715 CTTTCTTAGGAACCAAAGCCG 57.168 47.619 0.00 0.00 0.00 5.52
6793 15937 6.926313 AGTGCTAGTTGTACTCCTTTCTTAG 58.074 40.000 0.00 0.00 36.97 2.18
6803 15947 8.572185 CACATATGATAGAGTGCTAGTTGTACT 58.428 37.037 10.38 0.00 44.25 2.73
6804 15948 8.568794 TCACATATGATAGAGTGCTAGTTGTAC 58.431 37.037 10.38 0.00 32.25 2.90
6805 15949 8.691661 TCACATATGATAGAGTGCTAGTTGTA 57.308 34.615 10.38 0.00 32.25 2.41
6806 15950 7.588497 TCACATATGATAGAGTGCTAGTTGT 57.412 36.000 10.38 0.00 32.25 3.32
6807 15951 8.759641 GTTTCACATATGATAGAGTGCTAGTTG 58.240 37.037 10.38 0.00 33.85 3.16
6808 15952 7.928706 GGTTTCACATATGATAGAGTGCTAGTT 59.071 37.037 10.38 0.00 33.85 2.24
6809 15953 7.437748 GGTTTCACATATGATAGAGTGCTAGT 58.562 38.462 10.38 0.00 33.85 2.57
6810 15954 6.870965 GGGTTTCACATATGATAGAGTGCTAG 59.129 42.308 10.38 0.00 33.85 3.42
6811 15955 6.239600 GGGGTTTCACATATGATAGAGTGCTA 60.240 42.308 10.38 0.00 33.85 3.49
6813 15957 4.757149 GGGGTTTCACATATGATAGAGTGC 59.243 45.833 10.38 0.00 33.85 4.40
6815 15959 6.329986 TGATGGGGTTTCACATATGATAGAGT 59.670 38.462 10.38 0.00 33.85 3.24
6817 15961 6.239973 CCTGATGGGGTTTCACATATGATAGA 60.240 42.308 10.38 1.47 33.85 1.98
6819 15963 5.372363 ACCTGATGGGGTTTCACATATGATA 59.628 40.000 10.38 0.00 40.03 2.15
6821 15965 3.527253 ACCTGATGGGGTTTCACATATGA 59.473 43.478 10.38 0.00 40.03 2.15
6827 18367 2.961424 CCACCTGATGGGGTTTCAC 58.039 57.895 0.00 0.00 45.95 3.18
6836 18376 4.743057 TGATTGACTAGACCACCTGATG 57.257 45.455 0.00 0.00 0.00 3.07
6846 18386 6.459573 GGTTGTTGTGCTTTTGATTGACTAGA 60.460 38.462 0.00 0.00 0.00 2.43
6876 18417 5.468746 TGACTCTTAGTACCAACATTTGTGC 59.531 40.000 0.00 0.00 0.00 4.57
6904 18445 6.943718 TGTCTATTAAGTTTGAAATCCCCGTT 59.056 34.615 0.00 0.00 0.00 4.44
6959 18501 6.763135 GCCATGTTCTCAGAACTCATAACATA 59.237 38.462 18.49 0.00 35.87 2.29
6965 18507 2.306805 TGGCCATGTTCTCAGAACTCAT 59.693 45.455 18.49 1.92 0.00 2.90
6982 18524 1.702491 GCGTCGGTGTTAAGATGGCC 61.702 60.000 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.