Multiple sequence alignment - TraesCS3A01G022600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G022600 chr3A 100.000 5415 0 0 1 5415 12816514 12811100 0.000000e+00 10000.0
1 TraesCS3A01G022600 chr3A 84.430 623 81 6 2657 3278 733492046 733492653 2.790000e-167 599.0
2 TraesCS3A01G022600 chr3A 81.034 406 59 16 1319 1714 733491053 733491450 1.890000e-79 307.0
3 TraesCS3A01G022600 chr3D 92.146 1235 47 11 2597 3821 7591811 7593005 0.000000e+00 1698.0
4 TraesCS3A01G022600 chr3D 94.327 617 18 8 3937 4544 7593064 7593672 0.000000e+00 929.0
5 TraesCS3A01G022600 chr3D 92.193 602 28 8 1 583 352946181 352945580 0.000000e+00 833.0
6 TraesCS3A01G022600 chr3D 90.500 600 38 7 1 582 83700418 83699820 0.000000e+00 774.0
7 TraesCS3A01G022600 chr3D 84.853 614 78 7 2657 3267 603974071 603974672 6.000000e-169 604.0
8 TraesCS3A01G022600 chr3D 81.330 857 58 43 614 1427 7589750 7590547 2.160000e-168 603.0
9 TraesCS3A01G022600 chr3D 89.311 421 29 10 1500 1909 7590659 7591074 1.040000e-141 514.0
10 TraesCS3A01G022600 chr3D 92.737 358 13 6 5058 5415 7595208 7595552 6.260000e-139 505.0
11 TraesCS3A01G022600 chr3D 81.517 422 61 15 1304 1714 603973229 603973644 1.120000e-86 331.0
12 TraesCS3A01G022600 chr3D 85.050 301 20 7 4774 5060 7594123 7594412 3.190000e-72 283.0
13 TraesCS3A01G022600 chr3D 79.225 284 18 7 2092 2375 7591257 7591499 5.610000e-35 159.0
14 TraesCS3A01G022600 chr3D 100.000 45 0 0 1989 2033 7591207 7591251 3.480000e-12 84.2
15 TraesCS3A01G022600 chr3D 100.000 28 0 0 5113 5140 565326414 565326441 1.000000e-02 52.8
16 TraesCS3A01G022600 chr3B 89.118 1259 84 33 2597 3821 9915773 9917012 0.000000e+00 1517.0
17 TraesCS3A01G022600 chr3B 87.374 1093 72 32 885 1951 9913964 9915016 0.000000e+00 1194.0
18 TraesCS3A01G022600 chr3B 97.320 485 13 0 3937 4421 9917072 9917556 0.000000e+00 824.0
19 TraesCS3A01G022600 chr3B 84.932 584 73 5 2695 3278 811094620 811095188 1.310000e-160 577.0
20 TraesCS3A01G022600 chr3B 89.145 433 23 15 1422 1841 807981150 807980729 8.040000e-143 518.0
21 TraesCS3A01G022600 chr3B 90.863 197 13 4 2382 2575 9915525 9915719 5.380000e-65 259.0
22 TraesCS3A01G022600 chr3B 79.897 388 37 17 1989 2373 9915122 9915471 4.190000e-61 246.0
23 TraesCS3A01G022600 chr3B 81.148 244 20 11 614 841 9913729 9913962 7.210000e-39 172.0
24 TraesCS3A01G022600 chr5A 92.941 595 30 2 1 583 32738205 32738799 0.000000e+00 856.0
25 TraesCS3A01G022600 chr5A 90.596 638 34 6 1 612 557070655 557071292 0.000000e+00 822.0
26 TraesCS3A01G022600 chr5A 90.849 601 37 11 1 583 585211605 585212205 0.000000e+00 789.0
27 TraesCS3A01G022600 chr5A 89.221 603 30 10 1 583 584709968 584710555 0.000000e+00 721.0
28 TraesCS3A01G022600 chr5A 88.851 583 49 10 1 583 401506819 401506253 0.000000e+00 702.0
29 TraesCS3A01G022600 chr5A 89.095 431 23 16 1426 1841 494220197 494220618 1.040000e-141 514.0
30 TraesCS3A01G022600 chr1A 92.679 601 26 2 1 583 432517087 432517687 0.000000e+00 850.0
31 TraesCS3A01G022600 chr6A 90.967 631 37 5 2 612 585958488 585959118 0.000000e+00 832.0
32 TraesCS3A01G022600 chr4A 91.376 603 23 12 1 583 583981540 583982133 0.000000e+00 798.0
33 TraesCS3A01G022600 chr4A 90.833 600 36 3 1 582 606406913 606406315 0.000000e+00 785.0
34 TraesCS3A01G022600 chr4A 95.261 211 10 0 1501 1711 574872619 574872409 8.690000e-88 335.0
35 TraesCS3A01G022600 chr4A 93.427 213 14 0 1499 1711 75215130 75214918 3.150000e-82 316.0
36 TraesCS3A01G022600 chr7A 91.137 598 35 5 1 580 711959910 711960507 0.000000e+00 795.0
37 TraesCS3A01G022600 chr7A 89.498 438 21 17 1420 1841 651015133 651015561 1.030000e-146 531.0
38 TraesCS3A01G022600 chr7A 88.167 431 29 13 1423 1841 112623788 112624208 1.350000e-135 494.0
39 TraesCS3A01G022600 chr7A 76.384 542 94 28 18 531 582641398 582640863 1.500000e-65 261.0
40 TraesCS3A01G022600 chr7D 90.349 601 38 10 2 583 414431611 414432210 0.000000e+00 771.0
41 TraesCS3A01G022600 chr7D 81.395 344 45 16 5058 5398 506663479 506663152 4.160000e-66 263.0
42 TraesCS3A01G022600 chr2A 90.183 601 41 7 1 583 10977721 10977121 0.000000e+00 767.0
43 TraesCS3A01G022600 chr2A 86.759 506 27 5 132 612 571461487 571461977 1.340000e-145 527.0
44 TraesCS3A01G022600 chr2D 89.203 602 31 12 1 583 429202262 429202848 0.000000e+00 721.0
45 TraesCS3A01G022600 chr2D 89.952 209 21 0 1503 1711 403347791 403347583 2.490000e-68 270.0
46 TraesCS3A01G022600 chr4B 95.735 211 9 0 1501 1711 41010037 41010247 1.870000e-89 340.0
47 TraesCS3A01G022600 chr4B 91.204 216 19 0 1499 1714 483335248 483335033 1.470000e-75 294.0
48 TraesCS3A01G022600 chr4D 94.787 211 10 1 1501 1711 28560228 28560437 1.450000e-85 327.0
49 TraesCS3A01G022600 chr4D 94.313 211 12 0 1501 1711 28837077 28837287 1.880000e-84 324.0
50 TraesCS3A01G022600 chr4D 92.019 213 17 0 1499 1711 393635961 393636173 3.170000e-77 300.0
51 TraesCS3A01G022600 chr5D 90.431 209 20 0 1502 1710 530826200 530825992 5.340000e-70 276.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G022600 chr3A 12811100 12816514 5414 True 10000.0 10000 100.00000 1 5415 1 chr3A.!!$R1 5414
1 TraesCS3A01G022600 chr3A 733491053 733492653 1600 False 453.0 599 82.73200 1319 3278 2 chr3A.!!$F1 1959
2 TraesCS3A01G022600 chr3D 352945580 352946181 601 True 833.0 833 92.19300 1 583 1 chr3D.!!$R2 582
3 TraesCS3A01G022600 chr3D 83699820 83700418 598 True 774.0 774 90.50000 1 582 1 chr3D.!!$R1 581
4 TraesCS3A01G022600 chr3D 7589750 7595552 5802 False 596.9 1698 89.26575 614 5415 8 chr3D.!!$F2 4801
5 TraesCS3A01G022600 chr3D 603973229 603974672 1443 False 467.5 604 83.18500 1304 3267 2 chr3D.!!$F3 1963
6 TraesCS3A01G022600 chr3B 9913729 9917556 3827 False 702.0 1517 87.62000 614 4421 6 chr3B.!!$F2 3807
7 TraesCS3A01G022600 chr3B 811094620 811095188 568 False 577.0 577 84.93200 2695 3278 1 chr3B.!!$F1 583
8 TraesCS3A01G022600 chr5A 32738205 32738799 594 False 856.0 856 92.94100 1 583 1 chr5A.!!$F1 582
9 TraesCS3A01G022600 chr5A 557070655 557071292 637 False 822.0 822 90.59600 1 612 1 chr5A.!!$F3 611
10 TraesCS3A01G022600 chr5A 585211605 585212205 600 False 789.0 789 90.84900 1 583 1 chr5A.!!$F5 582
11 TraesCS3A01G022600 chr5A 584709968 584710555 587 False 721.0 721 89.22100 1 583 1 chr5A.!!$F4 582
12 TraesCS3A01G022600 chr5A 401506253 401506819 566 True 702.0 702 88.85100 1 583 1 chr5A.!!$R1 582
13 TraesCS3A01G022600 chr1A 432517087 432517687 600 False 850.0 850 92.67900 1 583 1 chr1A.!!$F1 582
14 TraesCS3A01G022600 chr6A 585958488 585959118 630 False 832.0 832 90.96700 2 612 1 chr6A.!!$F1 610
15 TraesCS3A01G022600 chr4A 583981540 583982133 593 False 798.0 798 91.37600 1 583 1 chr4A.!!$F1 582
16 TraesCS3A01G022600 chr4A 606406315 606406913 598 True 785.0 785 90.83300 1 582 1 chr4A.!!$R3 581
17 TraesCS3A01G022600 chr7A 711959910 711960507 597 False 795.0 795 91.13700 1 580 1 chr7A.!!$F3 579
18 TraesCS3A01G022600 chr7A 582640863 582641398 535 True 261.0 261 76.38400 18 531 1 chr7A.!!$R1 513
19 TraesCS3A01G022600 chr7D 414431611 414432210 599 False 771.0 771 90.34900 2 583 1 chr7D.!!$F1 581
20 TraesCS3A01G022600 chr2A 10977121 10977721 600 True 767.0 767 90.18300 1 583 1 chr2A.!!$R1 582
21 TraesCS3A01G022600 chr2D 429202262 429202848 586 False 721.0 721 89.20300 1 583 1 chr2D.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 728 0.178068 AAATACAGCGCCGGACATCT 59.822 50.0 5.05 0.0 0.0 2.90 F
1496 1674 0.109086 AGATCTGACGGACGTTGCTG 60.109 55.0 0.00 0.0 0.0 4.41 F
2363 2672 0.034756 CTGGTTGTGACACGGATGGA 59.965 55.0 0.22 0.0 0.0 3.41 F
3647 4308 0.824109 TAGGAACAGATCAGCCCACG 59.176 55.0 0.00 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2339 0.036952 CTGAGGAACATCAGCACCGT 60.037 55.0 3.66 0.0 40.26 4.83 R
2377 2686 0.250513 AGATTCAGCCAGACCGAACC 59.749 55.0 0.00 0.0 0.00 3.62 R
3952 4638 0.762418 TGTACCCCTGTGTGAAGTGG 59.238 55.0 0.00 0.0 0.00 4.00 R
5312 7047 0.037139 CGTTACCACCATCACCCGAA 60.037 55.0 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
420 467 3.680786 CCGGTCCTGACGCAGACA 61.681 66.667 8.20 0.00 32.44 3.41
612 725 1.743623 CCAAATACAGCGCCGGACA 60.744 57.895 5.05 0.00 0.00 4.02
613 726 1.095228 CCAAATACAGCGCCGGACAT 61.095 55.000 5.05 0.00 0.00 3.06
614 727 0.304705 CAAATACAGCGCCGGACATC 59.695 55.000 5.05 0.00 0.00 3.06
615 728 0.178068 AAATACAGCGCCGGACATCT 59.822 50.000 5.05 0.00 0.00 2.90
616 729 0.530650 AATACAGCGCCGGACATCTG 60.531 55.000 5.05 8.42 0.00 2.90
617 730 1.676678 ATACAGCGCCGGACATCTGT 61.677 55.000 5.05 14.11 41.93 3.41
618 731 2.279502 TACAGCGCCGGACATCTGTC 62.280 60.000 5.05 1.59 44.04 3.51
662 776 3.411351 CACGCGTCAACCTTCCCG 61.411 66.667 9.86 0.00 0.00 5.14
685 799 3.118454 CGCGTCGCATTTCACCCT 61.118 61.111 18.75 0.00 0.00 4.34
687 801 2.750888 GCGTCGCATTTCACCCTCC 61.751 63.158 13.44 0.00 0.00 4.30
688 802 2.106683 CGTCGCATTTCACCCTCCC 61.107 63.158 0.00 0.00 0.00 4.30
689 803 2.106683 GTCGCATTTCACCCTCCCG 61.107 63.158 0.00 0.00 0.00 5.14
690 804 2.046314 CGCATTTCACCCTCCCGT 60.046 61.111 0.00 0.00 0.00 5.28
691 805 2.106683 CGCATTTCACCCTCCCGTC 61.107 63.158 0.00 0.00 0.00 4.79
693 807 0.322546 GCATTTCACCCTCCCGTCTT 60.323 55.000 0.00 0.00 0.00 3.01
695 809 2.617021 GCATTTCACCCTCCCGTCTTAA 60.617 50.000 0.00 0.00 0.00 1.85
696 810 3.886123 CATTTCACCCTCCCGTCTTAAT 58.114 45.455 0.00 0.00 0.00 1.40
697 811 3.343941 TTTCACCCTCCCGTCTTAATG 57.656 47.619 0.00 0.00 0.00 1.90
698 812 0.539986 TCACCCTCCCGTCTTAATGC 59.460 55.000 0.00 0.00 0.00 3.56
717 831 6.616774 AATGCAAAAATAATAAATGGGCGG 57.383 33.333 0.00 0.00 0.00 6.13
718 832 3.873952 TGCAAAAATAATAAATGGGCGGC 59.126 39.130 0.00 0.00 0.00 6.53
725 843 0.690762 ATAAATGGGCGGCCGACTAT 59.309 50.000 33.64 29.95 0.00 2.12
726 844 0.250124 TAAATGGGCGGCCGACTATG 60.250 55.000 32.20 0.00 0.00 2.23
740 858 0.391661 ACTATGTTGTGGCCAGCTCG 60.392 55.000 5.11 0.00 0.00 5.03
807 942 1.606668 CCGCTGCACTAAACAAAAGGA 59.393 47.619 0.00 0.00 0.00 3.36
808 943 2.034053 CCGCTGCACTAAACAAAAGGAA 59.966 45.455 0.00 0.00 0.00 3.36
809 944 3.490078 CCGCTGCACTAAACAAAAGGAAA 60.490 43.478 0.00 0.00 0.00 3.13
810 945 3.730715 CGCTGCACTAAACAAAAGGAAAG 59.269 43.478 0.00 0.00 0.00 2.62
811 946 4.051237 GCTGCACTAAACAAAAGGAAAGG 58.949 43.478 0.00 0.00 0.00 3.11
812 947 4.620982 CTGCACTAAACAAAAGGAAAGGG 58.379 43.478 0.00 0.00 0.00 3.95
813 948 3.181470 TGCACTAAACAAAAGGAAAGGGC 60.181 43.478 0.00 0.00 33.97 5.19
814 949 3.802329 GCACTAAACAAAAGGAAAGGGCC 60.802 47.826 0.00 0.00 0.00 5.80
815 950 2.626266 ACTAAACAAAAGGAAAGGGCCG 59.374 45.455 0.00 0.00 0.00 6.13
816 951 1.491668 AAACAAAAGGAAAGGGCCGT 58.508 45.000 0.00 0.00 0.00 5.68
817 952 1.037493 AACAAAAGGAAAGGGCCGTC 58.963 50.000 0.00 0.00 0.00 4.79
818 953 0.826256 ACAAAAGGAAAGGGCCGTCC 60.826 55.000 18.65 18.65 0.00 4.79
865 1000 3.274586 CGCCGACCGAGACCGATA 61.275 66.667 0.00 0.00 40.02 2.92
866 1001 2.638154 GCCGACCGAGACCGATAG 59.362 66.667 0.00 0.00 38.22 2.08
867 1002 1.890979 GCCGACCGAGACCGATAGA 60.891 63.158 0.00 0.00 38.22 1.98
868 1003 1.843734 GCCGACCGAGACCGATAGAG 61.844 65.000 0.00 0.00 38.22 2.43
869 1004 0.249784 CCGACCGAGACCGATAGAGA 60.250 60.000 0.00 0.00 38.22 3.10
870 1005 1.141645 CGACCGAGACCGATAGAGAG 58.858 60.000 0.00 0.00 38.22 3.20
871 1006 1.269673 CGACCGAGACCGATAGAGAGA 60.270 57.143 0.00 0.00 38.22 3.10
872 1007 2.409975 GACCGAGACCGATAGAGAGAG 58.590 57.143 0.00 0.00 38.22 3.20
873 1008 2.036217 GACCGAGACCGATAGAGAGAGA 59.964 54.545 0.00 0.00 38.22 3.10
874 1009 2.036733 ACCGAGACCGATAGAGAGAGAG 59.963 54.545 0.00 0.00 38.22 3.20
875 1010 2.297880 CCGAGACCGATAGAGAGAGAGA 59.702 54.545 0.00 0.00 38.22 3.10
876 1011 3.575630 CGAGACCGATAGAGAGAGAGAG 58.424 54.545 0.00 0.00 38.22 3.20
877 1012 3.254903 CGAGACCGATAGAGAGAGAGAGA 59.745 52.174 0.00 0.00 38.22 3.10
880 1015 4.524714 AGACCGATAGAGAGAGAGAGAGAG 59.475 50.000 0.00 0.00 39.76 3.20
900 1035 1.214062 GAGAGAGAGCACACCCACG 59.786 63.158 0.00 0.00 0.00 4.94
901 1036 2.433318 GAGAGAGCACACCCACGC 60.433 66.667 0.00 0.00 0.00 5.34
1114 1252 2.184631 TCAGTCCCCTCCCCTCCTT 61.185 63.158 0.00 0.00 0.00 3.36
1115 1253 1.690985 CAGTCCCCTCCCCTCCTTC 60.691 68.421 0.00 0.00 0.00 3.46
1116 1254 1.869452 AGTCCCCTCCCCTCCTTCT 60.869 63.158 0.00 0.00 0.00 2.85
1140 1280 2.513666 CACACACACCACGCCAGT 60.514 61.111 0.00 0.00 0.00 4.00
1144 1284 2.736995 CACACCACGCCAGTACGG 60.737 66.667 0.00 0.06 37.37 4.02
1180 1331 2.602676 CCCACTACCCCACCACCAG 61.603 68.421 0.00 0.00 0.00 4.00
1181 1332 1.846124 CCACTACCCCACCACCAGT 60.846 63.158 0.00 0.00 0.00 4.00
1246 1406 3.249189 ACACCACCACTGCCCGAT 61.249 61.111 0.00 0.00 0.00 4.18
1267 1427 5.641209 CGATCTCATCCTTTATTCCATCCAC 59.359 44.000 0.00 0.00 0.00 4.02
1268 1428 5.310409 TCTCATCCTTTATTCCATCCACC 57.690 43.478 0.00 0.00 0.00 4.61
1293 1453 3.793144 GCCTGCACTGCGCTACAC 61.793 66.667 9.73 0.00 43.06 2.90
1294 1454 2.357396 CCTGCACTGCGCTACACA 60.357 61.111 9.73 0.83 43.06 3.72
1295 1455 2.671177 CCTGCACTGCGCTACACAC 61.671 63.158 9.73 0.00 43.06 3.82
1296 1456 1.665916 CTGCACTGCGCTACACACT 60.666 57.895 9.73 0.00 43.06 3.55
1297 1457 0.388520 CTGCACTGCGCTACACACTA 60.389 55.000 9.73 0.00 43.06 2.74
1298 1458 0.246360 TGCACTGCGCTACACACTAT 59.754 50.000 9.73 0.00 43.06 2.12
1299 1459 0.924090 GCACTGCGCTACACACTATC 59.076 55.000 9.73 0.00 37.77 2.08
1301 1461 1.135112 CACTGCGCTACACACTATCCA 60.135 52.381 9.73 0.00 0.00 3.41
1302 1462 1.135083 ACTGCGCTACACACTATCCAC 60.135 52.381 9.73 0.00 0.00 4.02
1438 1598 1.745864 GCGGTGAGGACGAGAGAGA 60.746 63.158 0.00 0.00 0.00 3.10
1445 1605 2.430694 TGAGGACGAGAGAGAGAGAGAG 59.569 54.545 0.00 0.00 0.00 3.20
1446 1606 2.693591 GAGGACGAGAGAGAGAGAGAGA 59.306 54.545 0.00 0.00 0.00 3.10
1448 1608 2.693591 GGACGAGAGAGAGAGAGAGAGA 59.306 54.545 0.00 0.00 0.00 3.10
1450 1610 2.101582 ACGAGAGAGAGAGAGAGAGAGC 59.898 54.545 0.00 0.00 0.00 4.09
1452 1612 1.414181 AGAGAGAGAGAGAGAGAGCGG 59.586 57.143 0.00 0.00 0.00 5.52
1453 1613 0.179045 AGAGAGAGAGAGAGAGCGGC 60.179 60.000 0.00 0.00 0.00 6.53
1454 1614 1.152963 AGAGAGAGAGAGAGCGGCC 60.153 63.158 0.00 0.00 0.00 6.13
1455 1615 2.515991 AGAGAGAGAGAGCGGCCG 60.516 66.667 24.05 24.05 0.00 6.13
1496 1674 0.109086 AGATCTGACGGACGTTGCTG 60.109 55.000 0.00 0.00 0.00 4.41
1657 1856 1.198713 AGCTCATGATGGACTCCGTT 58.801 50.000 0.00 0.00 0.00 4.44
1749 1958 2.310052 CCCAGATCCCACTCTCCTTTTT 59.690 50.000 0.00 0.00 0.00 1.94
1870 2081 2.801631 GGTCCGGAGATCCCAGCAG 61.802 68.421 3.06 0.00 34.14 4.24
1873 2084 3.473647 CGGAGATCCCAGCAGCCA 61.474 66.667 0.00 0.00 34.14 4.75
1874 2085 2.509916 GGAGATCCCAGCAGCCAG 59.490 66.667 0.00 0.00 34.14 4.85
1876 2087 2.041762 AGATCCCAGCAGCCAGGA 59.958 61.111 3.49 3.49 0.00 3.86
1891 2106 2.514803 CCAGGAGGTTTTGGTTGGTAG 58.485 52.381 0.00 0.00 0.00 3.18
1904 2119 2.353406 GGTTGGTAGCGCTCTGTTTCTA 60.353 50.000 16.34 0.00 0.00 2.10
1937 2158 2.433604 TCTGCTGCTCCCTTCTATTCTG 59.566 50.000 0.00 0.00 0.00 3.02
1975 2217 2.742372 GCGCGGCAGAGGAGAAAA 60.742 61.111 8.83 0.00 0.00 2.29
1980 2222 1.826385 CGGCAGAGGAGAAAACCAAT 58.174 50.000 0.00 0.00 0.00 3.16
1983 2225 1.203287 GCAGAGGAGAAAACCAATGGC 59.797 52.381 0.00 0.00 0.00 4.40
1984 2226 2.800250 CAGAGGAGAAAACCAATGGCT 58.200 47.619 0.00 0.00 0.00 4.75
1985 2227 2.490903 CAGAGGAGAAAACCAATGGCTG 59.509 50.000 0.00 0.00 0.00 4.85
1986 2228 2.108952 AGAGGAGAAAACCAATGGCTGT 59.891 45.455 0.00 0.00 0.00 4.40
1987 2229 2.229784 GAGGAGAAAACCAATGGCTGTG 59.770 50.000 0.00 0.00 0.00 3.66
2033 2333 3.259123 GGAAAACATGTCCATCAGGCTTT 59.741 43.478 0.00 0.00 35.05 3.51
2037 2337 4.785346 ACATGTCCATCAGGCTTTAGAT 57.215 40.909 0.00 0.00 33.74 1.98
2039 2339 6.252599 ACATGTCCATCAGGCTTTAGATAA 57.747 37.500 0.00 0.00 33.74 1.75
2041 2341 4.693283 TGTCCATCAGGCTTTAGATAACG 58.307 43.478 0.00 0.00 33.74 3.18
2053 2353 5.502544 GCTTTAGATAACGGTGCTGATGTTC 60.503 44.000 0.00 0.00 0.00 3.18
2057 2357 0.396435 AACGGTGCTGATGTTCCTCA 59.604 50.000 0.00 0.00 0.00 3.86
2058 2358 0.036952 ACGGTGCTGATGTTCCTCAG 60.037 55.000 0.00 0.00 44.51 3.35
2064 2364 0.325933 CTGATGTTCCTCAGCCACCA 59.674 55.000 0.00 0.00 36.53 4.17
2073 2373 2.158475 TCCTCAGCCACCAGTGAATTTT 60.158 45.455 0.00 0.00 0.00 1.82
2082 2382 1.196808 CCAGTGAATTTTGACCCGACG 59.803 52.381 0.00 0.00 0.00 5.12
2084 2384 2.157668 CAGTGAATTTTGACCCGACGAG 59.842 50.000 0.00 0.00 0.00 4.18
2085 2385 2.036733 AGTGAATTTTGACCCGACGAGA 59.963 45.455 0.00 0.00 0.00 4.04
2086 2386 3.000727 GTGAATTTTGACCCGACGAGAT 58.999 45.455 0.00 0.00 0.00 2.75
2087 2387 3.000041 TGAATTTTGACCCGACGAGATG 59.000 45.455 0.00 0.00 0.00 2.90
2088 2388 3.259064 GAATTTTGACCCGACGAGATGA 58.741 45.455 0.00 0.00 0.00 2.92
2089 2389 2.823924 TTTTGACCCGACGAGATGAA 57.176 45.000 0.00 0.00 0.00 2.57
2096 2396 3.458189 ACCCGACGAGATGAATGAATTC 58.542 45.455 0.00 0.00 37.31 2.17
2105 2405 5.443824 CGAGATGAATGAATTCGCTAATCCG 60.444 44.000 0.04 4.82 39.62 4.18
2106 2406 3.878086 TGAATGAATTCGCTAATCCGC 57.122 42.857 0.04 0.00 39.62 5.54
2154 2455 1.407162 GGCTTCTTGAGAGCTGCAGAT 60.407 52.381 20.43 12.64 0.00 2.90
2189 2490 1.300963 CCAGCCACAGGTGCATAGT 59.699 57.895 0.00 0.00 40.28 2.12
2190 2491 0.541392 CCAGCCACAGGTGCATAGTA 59.459 55.000 0.00 0.00 40.28 1.82
2191 2492 1.473965 CCAGCCACAGGTGCATAGTAG 60.474 57.143 0.00 0.00 40.28 2.57
2192 2493 1.208052 CAGCCACAGGTGCATAGTAGT 59.792 52.381 0.00 0.00 34.14 2.73
2193 2494 1.208052 AGCCACAGGTGCATAGTAGTG 59.792 52.381 0.00 0.00 0.00 2.74
2194 2495 1.743772 GCCACAGGTGCATAGTAGTGG 60.744 57.143 17.20 17.20 46.96 4.00
2196 2497 3.610040 CACAGGTGCATAGTAGTGGAA 57.390 47.619 0.00 0.00 0.00 3.53
2197 2498 3.262420 CACAGGTGCATAGTAGTGGAAC 58.738 50.000 0.00 0.00 0.00 3.62
2198 2499 2.903784 ACAGGTGCATAGTAGTGGAACA 59.096 45.455 0.00 0.00 41.43 3.18
2199 2500 3.519510 ACAGGTGCATAGTAGTGGAACAT 59.480 43.478 0.00 0.00 44.52 2.71
2200 2501 4.122776 CAGGTGCATAGTAGTGGAACATC 58.877 47.826 0.00 0.00 44.52 3.06
2201 2502 3.134804 AGGTGCATAGTAGTGGAACATCC 59.865 47.826 0.00 0.00 44.52 3.51
2202 2503 3.467803 GTGCATAGTAGTGGAACATCCC 58.532 50.000 0.00 0.00 44.52 3.85
2203 2504 3.111484 TGCATAGTAGTGGAACATCCCA 58.889 45.455 0.00 0.00 44.52 4.37
2204 2505 3.716353 TGCATAGTAGTGGAACATCCCAT 59.284 43.478 0.00 0.00 44.52 4.00
2205 2506 4.904853 TGCATAGTAGTGGAACATCCCATA 59.095 41.667 0.00 0.00 44.52 2.74
2206 2507 5.221641 TGCATAGTAGTGGAACATCCCATAC 60.222 44.000 0.00 0.00 44.52 2.39
2235 2544 7.733402 TTGGTGTGGTTCATTTACTAGTAAC 57.267 36.000 14.96 5.91 0.00 2.50
2238 2547 6.932960 GGTGTGGTTCATTTACTAGTAACTGT 59.067 38.462 24.27 9.68 30.63 3.55
2240 2549 8.833493 GTGTGGTTCATTTACTAGTAACTGTTT 58.167 33.333 24.27 4.77 30.63 2.83
2241 2550 8.832521 TGTGGTTCATTTACTAGTAACTGTTTG 58.167 33.333 24.27 13.87 30.63 2.93
2242 2551 8.833493 GTGGTTCATTTACTAGTAACTGTTTGT 58.167 33.333 24.27 2.91 30.63 2.83
2243 2552 8.832521 TGGTTCATTTACTAGTAACTGTTTGTG 58.167 33.333 24.27 12.06 30.63 3.33
2244 2553 9.048446 GGTTCATTTACTAGTAACTGTTTGTGA 57.952 33.333 24.27 13.57 30.63 3.58
2246 2555 9.826574 TTCATTTACTAGTAACTGTTTGTGAGT 57.173 29.630 24.27 0.83 30.63 3.41
2247 2556 9.826574 TCATTTACTAGTAACTGTTTGTGAGTT 57.173 29.630 24.27 0.00 37.43 3.01
2248 2557 9.864034 CATTTACTAGTAACTGTTTGTGAGTTG 57.136 33.333 19.67 0.00 35.30 3.16
2249 2558 9.609346 ATTTACTAGTAACTGTTTGTGAGTTGT 57.391 29.630 14.96 0.00 35.30 3.32
2250 2559 6.903883 ACTAGTAACTGTTTGTGAGTTGTG 57.096 37.500 0.00 0.00 35.30 3.33
2251 2560 6.636705 ACTAGTAACTGTTTGTGAGTTGTGA 58.363 36.000 0.00 0.00 35.30 3.58
2256 2565 2.088423 TGTTTGTGAGTTGTGACCCAC 58.912 47.619 0.00 0.00 35.30 4.61
2257 2566 1.404035 GTTTGTGAGTTGTGACCCACC 59.596 52.381 0.00 0.00 33.94 4.61
2262 2571 4.265056 GTTGTGACCCACCGGCCT 62.265 66.667 0.00 0.00 32.73 5.19
2266 2575 2.039787 TGACCCACCGGCCTATCA 59.960 61.111 0.00 0.00 0.00 2.15
2270 2579 2.375345 CCCACCGGCCTATCAACCT 61.375 63.158 0.00 0.00 0.00 3.50
2277 2586 2.555199 CGGCCTATCAACCTTCTTGAG 58.445 52.381 0.00 0.00 0.00 3.02
2314 2623 1.737793 GTAACGGGAAAGTGATGGCTG 59.262 52.381 0.00 0.00 0.00 4.85
2317 2626 1.247567 CGGGAAAGTGATGGCTGTTT 58.752 50.000 0.00 0.00 0.00 2.83
2319 2628 2.607771 CGGGAAAGTGATGGCTGTTTTG 60.608 50.000 0.00 0.00 0.00 2.44
2321 2630 3.181466 GGGAAAGTGATGGCTGTTTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
2322 2631 4.038642 GGGAAAGTGATGGCTGTTTTGTTA 59.961 41.667 0.00 0.00 0.00 2.41
2341 2650 7.403312 TTGTTATCCATATGGTTGAACCTTG 57.597 36.000 21.28 10.20 39.58 3.61
2363 2672 0.034756 CTGGTTGTGACACGGATGGA 59.965 55.000 0.22 0.00 0.00 3.41
2373 2682 1.203001 ACACGGATGGATGGTTTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
2375 2684 1.354368 ACGGATGGATGGTTTTGGTCT 59.646 47.619 0.00 0.00 0.00 3.85
2377 2686 2.102578 GGATGGATGGTTTTGGTCTGG 58.897 52.381 0.00 0.00 0.00 3.86
2378 2687 2.102578 GATGGATGGTTTTGGTCTGGG 58.897 52.381 0.00 0.00 0.00 4.45
2380 2689 1.219213 TGGATGGTTTTGGTCTGGGTT 59.781 47.619 0.00 0.00 0.00 4.11
2458 2893 2.719705 TCACCTGGTAGGGAATTTGGTT 59.280 45.455 0.00 0.00 40.58 3.67
2468 2903 6.766467 GGTAGGGAATTTGGTTATAGTGACTG 59.234 42.308 0.00 0.00 0.00 3.51
2469 2904 6.388619 AGGGAATTTGGTTATAGTGACTGT 57.611 37.500 0.00 0.00 0.00 3.55
2511 2950 1.276415 ACACGCAATGCAAACAACAC 58.724 45.000 5.91 0.00 0.00 3.32
2535 2974 1.315257 ATGCGATTTCTGGTGGGCAC 61.315 55.000 0.00 0.00 32.69 5.01
2555 2994 2.101783 CCATGCCAGGTAATTGCAAGA 58.898 47.619 4.94 0.00 38.69 3.02
2556 2995 2.159198 CCATGCCAGGTAATTGCAAGAC 60.159 50.000 4.94 5.48 38.69 3.01
2580 3036 6.877322 ACGACTATGCAAAACCTGTTACTAAT 59.123 34.615 0.00 0.00 0.00 1.73
2589 3045 8.520351 GCAAAACCTGTTACTAATCCACTTATT 58.480 33.333 0.00 0.00 0.00 1.40
2592 3048 8.803397 AACCTGTTACTAATCCACTTATTTCC 57.197 34.615 0.00 0.00 0.00 3.13
2691 3298 7.219484 ACAAGCTGTTGATTTTAAGCACTAT 57.781 32.000 0.00 0.00 38.14 2.12
2693 3300 8.237267 ACAAGCTGTTGATTTTAAGCACTATAC 58.763 33.333 0.00 0.00 38.14 1.47
2716 3323 4.681025 CGCATTTGCTTATCACTTGTTTGT 59.319 37.500 0.51 0.00 39.32 2.83
2822 3429 4.452733 GTGGGGTCCTCGGAAGCG 62.453 72.222 0.00 0.00 0.00 4.68
2935 3550 5.923204 TGGTGCAAATGTTCAGGTATTTTT 58.077 33.333 0.00 0.00 0.00 1.94
2936 3551 5.988561 TGGTGCAAATGTTCAGGTATTTTTC 59.011 36.000 0.00 0.00 0.00 2.29
2937 3552 5.408299 GGTGCAAATGTTCAGGTATTTTTCC 59.592 40.000 0.00 0.00 0.00 3.13
2938 3553 6.223120 GTGCAAATGTTCAGGTATTTTTCCT 58.777 36.000 0.00 0.00 35.45 3.36
2952 3570 6.256975 GGTATTTTTCCTGTTGTTGTTGTTCC 59.743 38.462 0.00 0.00 0.00 3.62
2998 3617 3.620488 ACCACTGTATTTATGTGCCAGG 58.380 45.455 0.00 0.00 0.00 4.45
3117 3738 3.521727 AGGGTACTATGTCATGGATCCC 58.478 50.000 9.90 18.15 0.00 3.85
3260 3881 7.462571 ACAAGGAAACAGGGTATGTATTTTC 57.537 36.000 0.00 0.00 43.00 2.29
3328 3949 8.697846 ATCATTGAAATTGTGCAGAAAGTATG 57.302 30.769 0.00 1.41 0.00 2.39
3329 3950 6.587226 TCATTGAAATTGTGCAGAAAGTATGC 59.413 34.615 0.00 0.00 44.11 3.14
3336 3957 2.539346 GCAGAAAGTATGCAGCACAG 57.461 50.000 0.00 0.00 43.31 3.66
3337 3958 1.808945 GCAGAAAGTATGCAGCACAGT 59.191 47.619 0.00 0.00 43.31 3.55
3338 3959 2.227388 GCAGAAAGTATGCAGCACAGTT 59.773 45.455 0.00 0.00 43.31 3.16
3339 3960 3.304928 GCAGAAAGTATGCAGCACAGTTT 60.305 43.478 6.17 6.17 43.31 2.66
3340 3961 4.224433 CAGAAAGTATGCAGCACAGTTTG 58.776 43.478 11.31 0.00 0.00 2.93
3341 3962 4.023792 CAGAAAGTATGCAGCACAGTTTGA 60.024 41.667 11.31 0.00 0.00 2.69
3342 3963 3.904136 AAGTATGCAGCACAGTTTGAC 57.096 42.857 0.00 0.00 0.00 3.18
3343 3964 2.849942 AGTATGCAGCACAGTTTGACA 58.150 42.857 0.00 0.00 0.00 3.58
3344 3965 3.415212 AGTATGCAGCACAGTTTGACAT 58.585 40.909 0.00 0.00 0.00 3.06
3345 3966 4.578871 AGTATGCAGCACAGTTTGACATA 58.421 39.130 0.00 0.00 0.00 2.29
3346 3967 5.188434 AGTATGCAGCACAGTTTGACATAT 58.812 37.500 0.00 0.00 0.00 1.78
3347 3968 3.835378 TGCAGCACAGTTTGACATATG 57.165 42.857 0.00 0.00 0.00 1.78
3348 3969 3.148412 TGCAGCACAGTTTGACATATGT 58.852 40.909 8.43 8.43 0.00 2.29
3349 3970 3.569277 TGCAGCACAGTTTGACATATGTT 59.431 39.130 10.30 0.00 0.00 2.71
3350 3971 4.037803 TGCAGCACAGTTTGACATATGTTT 59.962 37.500 10.30 0.00 0.00 2.83
3351 3972 5.240403 TGCAGCACAGTTTGACATATGTTTA 59.760 36.000 10.30 0.00 0.00 2.01
3393 4054 8.806429 ATAACATGGTTTGACATATGTCTTCA 57.194 30.769 30.67 22.82 44.99 3.02
3506 4167 2.826777 AATGGGACTTCAGGCTGCCG 62.827 60.000 13.96 8.60 0.00 5.69
3647 4308 0.824109 TAGGAACAGATCAGCCCACG 59.176 55.000 0.00 0.00 0.00 4.94
3680 4347 6.098409 TGAACTTCTCCAAGGGTCAGTATATC 59.902 42.308 0.00 0.00 33.37 1.63
3691 4358 7.313740 AGGGTCAGTATATCGTTCTCTAGTA 57.686 40.000 0.00 0.00 0.00 1.82
3733 4407 5.804692 TGTTACAACAACTTAGGTGTGTG 57.195 39.130 2.75 7.30 35.67 3.82
3754 4428 2.733227 GCTGTGTGAATTATGTGCAGGC 60.733 50.000 0.00 0.00 0.00 4.85
3772 4446 1.858041 CGCTAGCCAGATCATTGCG 59.142 57.895 9.66 0.00 36.19 4.85
3821 4495 1.589196 GAGGTATGCGTCGTCAGCC 60.589 63.158 0.00 0.37 0.00 4.85
3822 4496 2.005960 GAGGTATGCGTCGTCAGCCT 62.006 60.000 12.00 12.00 0.00 4.58
3823 4497 1.589196 GGTATGCGTCGTCAGCCTC 60.589 63.158 0.00 0.00 0.00 4.70
3825 4499 2.049767 TATGCGTCGTCAGCCTCCA 61.050 57.895 0.00 0.00 0.00 3.86
3828 4502 1.741770 GCGTCGTCAGCCTCCATTT 60.742 57.895 0.00 0.00 0.00 2.32
3831 4517 1.087501 GTCGTCAGCCTCCATTTTCC 58.912 55.000 0.00 0.00 0.00 3.13
3832 4518 0.984230 TCGTCAGCCTCCATTTTCCT 59.016 50.000 0.00 0.00 0.00 3.36
3837 4523 4.526970 GTCAGCCTCCATTTTCCTTCATA 58.473 43.478 0.00 0.00 0.00 2.15
3844 4530 6.044682 CCTCCATTTTCCTTCATATGCAAAC 58.955 40.000 0.00 0.00 0.00 2.93
3847 4533 6.211184 TCCATTTTCCTTCATATGCAAACTGT 59.789 34.615 0.00 0.00 0.00 3.55
3859 4545 9.230122 TCATATGCAAACTGTAGAGAATTTTGA 57.770 29.630 0.00 0.00 30.23 2.69
3862 4548 6.913170 TGCAAACTGTAGAGAATTTTGATCC 58.087 36.000 5.85 0.00 30.23 3.36
3863 4549 6.489700 TGCAAACTGTAGAGAATTTTGATCCA 59.510 34.615 5.85 0.00 30.23 3.41
3864 4550 7.014134 TGCAAACTGTAGAGAATTTTGATCCAA 59.986 33.333 5.85 0.00 30.23 3.53
3865 4551 7.327032 GCAAACTGTAGAGAATTTTGATCCAAC 59.673 37.037 5.85 0.00 30.23 3.77
3867 4553 8.463930 AACTGTAGAGAATTTTGATCCAACAA 57.536 30.769 0.00 0.00 0.00 2.83
3868 4554 8.103948 ACTGTAGAGAATTTTGATCCAACAAG 57.896 34.615 0.00 0.00 0.00 3.16
3869 4555 7.939039 ACTGTAGAGAATTTTGATCCAACAAGA 59.061 33.333 0.00 0.00 0.00 3.02
3870 4556 8.690203 TGTAGAGAATTTTGATCCAACAAGAA 57.310 30.769 0.00 0.00 0.00 2.52
3871 4557 9.130661 TGTAGAGAATTTTGATCCAACAAGAAA 57.869 29.630 0.00 0.00 0.00 2.52
3872 4558 9.965824 GTAGAGAATTTTGATCCAACAAGAAAA 57.034 29.630 0.00 0.00 0.00 2.29
3877 4563 9.882996 GAATTTTGATCCAACAAGAAAAATTCC 57.117 29.630 17.33 7.15 42.55 3.01
3878 4564 9.631257 AATTTTGATCCAACAAGAAAAATTCCT 57.369 25.926 0.00 0.00 34.00 3.36
3881 4567 9.709495 TTTGATCCAACAAGAAAAATTCCTATG 57.291 29.630 0.00 0.00 0.00 2.23
3882 4568 8.421249 TGATCCAACAAGAAAAATTCCTATGT 57.579 30.769 0.00 0.00 0.00 2.29
3883 4569 9.527157 TGATCCAACAAGAAAAATTCCTATGTA 57.473 29.630 0.00 0.00 0.00 2.29
3884 4570 9.788960 GATCCAACAAGAAAAATTCCTATGTAC 57.211 33.333 0.00 0.00 0.00 2.90
3885 4571 8.698973 TCCAACAAGAAAAATTCCTATGTACA 57.301 30.769 0.00 0.00 0.00 2.90
3886 4572 9.137459 TCCAACAAGAAAAATTCCTATGTACAA 57.863 29.630 0.00 0.00 0.00 2.41
3887 4573 9.410556 CCAACAAGAAAAATTCCTATGTACAAG 57.589 33.333 0.00 0.00 0.00 3.16
3917 4603 8.876275 ATGAAATGATACAATACATTTGGCAC 57.124 30.769 0.00 0.00 43.62 5.01
3918 4604 7.834803 TGAAATGATACAATACATTTGGCACA 58.165 30.769 0.00 0.00 43.62 4.57
3931 4617 2.937469 TGGCACAAGTGTTGTTTCAG 57.063 45.000 1.79 0.00 43.23 3.02
3932 4618 2.166829 TGGCACAAGTGTTGTTTCAGT 58.833 42.857 1.79 0.00 43.23 3.41
3933 4619 2.094803 TGGCACAAGTGTTGTTTCAGTG 60.095 45.455 1.79 0.00 43.23 3.66
3934 4620 2.094752 GGCACAAGTGTTGTTTCAGTGT 60.095 45.455 1.79 0.00 43.23 3.55
3935 4621 3.574614 GCACAAGTGTTGTTTCAGTGTT 58.425 40.909 1.79 0.00 43.23 3.32
3952 4638 5.296780 TCAGTGTTTGACATCTTTCTTCACC 59.703 40.000 0.00 0.00 0.00 4.02
4405 5091 3.062466 GGGAACAAGAAGGCCGGC 61.062 66.667 21.18 21.18 0.00 6.13
4437 5127 3.305516 GGGGTGGTGCTTGCTTGG 61.306 66.667 0.00 0.00 0.00 3.61
4450 5140 2.743928 CTTGGTGAGACGCCTGGC 60.744 66.667 9.11 9.11 34.70 4.85
4461 5151 2.360475 GCCTGGCGCCTTCTTTCT 60.360 61.111 29.70 0.00 0.00 2.52
4463 5153 1.527433 GCCTGGCGCCTTCTTTCTTT 61.527 55.000 29.70 0.00 0.00 2.52
4464 5154 0.523519 CCTGGCGCCTTCTTTCTTTC 59.476 55.000 29.70 0.00 0.00 2.62
4465 5155 1.238439 CTGGCGCCTTCTTTCTTTCA 58.762 50.000 29.70 0.41 0.00 2.69
4466 5156 1.815003 CTGGCGCCTTCTTTCTTTCAT 59.185 47.619 29.70 0.00 0.00 2.57
4467 5157 1.812571 TGGCGCCTTCTTTCTTTCATC 59.187 47.619 29.70 0.00 0.00 2.92
4468 5158 1.812571 GGCGCCTTCTTTCTTTCATCA 59.187 47.619 22.15 0.00 0.00 3.07
4469 5159 2.414691 GGCGCCTTCTTTCTTTCATCAC 60.415 50.000 22.15 0.00 0.00 3.06
4470 5160 2.726066 GCGCCTTCTTTCTTTCATCACG 60.726 50.000 0.00 0.00 0.00 4.35
4471 5161 2.480419 CGCCTTCTTTCTTTCATCACGT 59.520 45.455 0.00 0.00 0.00 4.49
4472 5162 3.678072 CGCCTTCTTTCTTTCATCACGTA 59.322 43.478 0.00 0.00 0.00 3.57
4487 5177 8.797266 TTCATCACGTATGTCTATGTTGTATC 57.203 34.615 0.00 0.00 36.89 2.24
4517 5215 2.917713 ATTATTGTGGAGGGGTGCAA 57.082 45.000 0.00 0.00 0.00 4.08
4544 5242 1.152030 TGTCAGGACCTGCCTCCTT 60.152 57.895 17.33 0.00 46.97 3.36
4545 5243 0.116342 TGTCAGGACCTGCCTCCTTA 59.884 55.000 17.33 0.00 46.97 2.69
4546 5244 1.273838 TGTCAGGACCTGCCTCCTTAT 60.274 52.381 17.33 0.00 46.97 1.73
4548 5246 2.239907 GTCAGGACCTGCCTCCTTATTT 59.760 50.000 17.33 0.00 46.97 1.40
4550 5248 3.019564 CAGGACCTGCCTCCTTATTTTG 58.980 50.000 8.99 0.00 46.97 2.44
4551 5249 1.751351 GGACCTGCCTCCTTATTTTGC 59.249 52.381 0.00 0.00 0.00 3.68
4552 5250 2.446435 GACCTGCCTCCTTATTTTGCA 58.554 47.619 0.00 0.00 0.00 4.08
4553 5251 2.164422 GACCTGCCTCCTTATTTTGCAC 59.836 50.000 0.00 0.00 0.00 4.57
4554 5252 1.133025 CCTGCCTCCTTATTTTGCACG 59.867 52.381 0.00 0.00 0.00 5.34
4555 5253 1.812571 CTGCCTCCTTATTTTGCACGT 59.187 47.619 0.00 0.00 0.00 4.49
4556 5254 3.006940 CTGCCTCCTTATTTTGCACGTA 58.993 45.455 0.00 0.00 0.00 3.57
4557 5255 2.745281 TGCCTCCTTATTTTGCACGTAC 59.255 45.455 0.00 0.00 0.00 3.67
4558 5256 2.745281 GCCTCCTTATTTTGCACGTACA 59.255 45.455 0.00 0.00 0.00 2.90
4559 5257 3.377172 GCCTCCTTATTTTGCACGTACAT 59.623 43.478 0.00 0.00 0.00 2.29
4560 5258 4.142469 GCCTCCTTATTTTGCACGTACATT 60.142 41.667 0.00 0.00 0.00 2.71
4562 5260 6.027749 CCTCCTTATTTTGCACGTACATTTC 58.972 40.000 0.00 0.00 0.00 2.17
4563 5261 5.623335 TCCTTATTTTGCACGTACATTTCG 58.377 37.500 0.00 0.00 0.00 3.46
4564 5262 5.179742 TCCTTATTTTGCACGTACATTTCGT 59.820 36.000 0.00 0.00 42.33 3.85
4565 5263 5.506832 CCTTATTTTGCACGTACATTTCGTC 59.493 40.000 0.00 0.00 39.55 4.20
4566 5264 4.742438 ATTTTGCACGTACATTTCGTCT 57.258 36.364 0.00 0.00 39.55 4.18
4567 5265 3.513462 TTTGCACGTACATTTCGTCTG 57.487 42.857 0.00 0.00 39.55 3.51
4576 5310 3.194005 ACATTTCGTCTGTGGTTCTGT 57.806 42.857 0.00 0.00 0.00 3.41
4583 5317 2.035449 CGTCTGTGGTTCTGTACAGGAA 59.965 50.000 22.48 12.42 43.40 3.36
4584 5318 3.654414 GTCTGTGGTTCTGTACAGGAAG 58.346 50.000 22.48 8.55 43.40 3.46
4585 5319 2.632996 TCTGTGGTTCTGTACAGGAAGG 59.367 50.000 22.48 7.25 43.40 3.46
4586 5320 2.632996 CTGTGGTTCTGTACAGGAAGGA 59.367 50.000 22.48 0.00 40.38 3.36
4597 5331 1.203364 ACAGGAAGGACACCTCTCCAT 60.203 52.381 15.62 6.17 35.08 3.41
4618 5352 3.211865 TCGAGGTCGCTATGTATCTGTT 58.788 45.455 0.00 0.00 39.60 3.16
4631 5366 5.862924 TGTATCTGTTGTTTGCTTAGCTC 57.137 39.130 5.60 0.00 0.00 4.09
4633 5368 5.409520 TGTATCTGTTGTTTGCTTAGCTCTG 59.590 40.000 5.60 0.00 0.00 3.35
4642 5377 1.550524 TGCTTAGCTCTGTGTCGGAAT 59.449 47.619 5.60 0.00 0.00 3.01
4651 5386 2.034939 TCTGTGTCGGAATGTTACGTGT 59.965 45.455 0.00 0.00 35.58 4.49
4655 5390 3.001533 GTGTCGGAATGTTACGTGTTTGT 59.998 43.478 0.00 0.00 35.58 2.83
4675 5454 9.689976 TGTTTGTTGTATCCTTTGAATGTATTG 57.310 29.630 0.00 0.00 0.00 1.90
4692 5471 8.571461 AATGTATTGCATTATATAGTGCTGCT 57.429 30.769 25.15 14.73 45.26 4.24
4698 5477 4.756642 GCATTATATAGTGCTGCTGGACAA 59.243 41.667 19.80 3.04 36.20 3.18
4700 5479 2.293677 TATAGTGCTGCTGGACAACG 57.706 50.000 17.11 0.00 36.96 4.10
4701 5480 0.321671 ATAGTGCTGCTGGACAACGT 59.678 50.000 17.11 0.00 36.96 3.99
4702 5481 0.105964 TAGTGCTGCTGGACAACGTT 59.894 50.000 17.11 0.00 36.96 3.99
4703 5482 1.009675 GTGCTGCTGGACAACGTTG 60.010 57.895 26.20 26.20 34.50 4.10
4705 5484 2.639286 CTGCTGGACAACGTTGCC 59.361 61.111 27.61 26.34 0.00 4.52
4706 5485 2.124529 TGCTGGACAACGTTGCCA 60.125 55.556 29.74 29.74 34.67 4.92
4707 5486 1.723608 CTGCTGGACAACGTTGCCAA 61.724 55.000 30.60 21.65 35.19 4.52
4709 5488 0.594796 GCTGGACAACGTTGCCAAAG 60.595 55.000 30.60 24.27 35.19 2.77
4711 5490 1.034838 TGGACAACGTTGCCAAAGCT 61.035 50.000 29.77 12.32 40.80 3.74
4712 5491 0.102300 GGACAACGTTGCCAAAGCTT 59.898 50.000 27.61 5.81 40.80 3.74
4715 5494 1.202290 ACAACGTTGCCAAAGCTTCAG 60.202 47.619 27.61 0.00 40.80 3.02
4716 5495 0.249031 AACGTTGCCAAAGCTTCAGC 60.249 50.000 12.51 12.51 40.80 4.26
4717 5496 1.359833 CGTTGCCAAAGCTTCAGCA 59.640 52.632 16.92 16.92 45.16 4.41
4718 5497 0.038892 CGTTGCCAAAGCTTCAGCAT 60.039 50.000 20.32 0.00 45.16 3.79
4722 5501 2.237643 TGCCAAAGCTTCAGCATGTAA 58.762 42.857 16.92 0.00 45.16 2.41
4723 5502 2.827322 TGCCAAAGCTTCAGCATGTAAT 59.173 40.909 16.92 0.00 45.16 1.89
4724 5503 3.184541 GCCAAAGCTTCAGCATGTAATG 58.815 45.455 14.09 0.00 45.16 1.90
4735 5514 1.640428 CATGTAATGCGTCCGTGACT 58.360 50.000 3.15 0.00 37.62 3.41
4736 5515 1.588404 CATGTAATGCGTCCGTGACTC 59.412 52.381 3.15 0.00 37.62 3.36
4737 5516 0.885879 TGTAATGCGTCCGTGACTCT 59.114 50.000 3.15 0.00 0.00 3.24
4738 5517 1.135489 TGTAATGCGTCCGTGACTCTC 60.135 52.381 3.15 0.00 0.00 3.20
4739 5518 1.132643 GTAATGCGTCCGTGACTCTCT 59.867 52.381 3.15 0.00 0.00 3.10
4743 5522 1.797441 CGTCCGTGACTCTCTCCAG 59.203 63.158 3.15 0.00 0.00 3.86
4744 5523 1.649390 CGTCCGTGACTCTCTCCAGG 61.649 65.000 3.15 0.00 0.00 4.45
4745 5524 0.609681 GTCCGTGACTCTCTCCAGGT 60.610 60.000 0.00 0.00 0.00 4.00
4746 5525 0.112606 TCCGTGACTCTCTCCAGGTT 59.887 55.000 0.00 0.00 0.00 3.50
4748 5527 0.389166 CGTGACTCTCTCCAGGTTGC 60.389 60.000 0.00 0.00 0.00 4.17
4749 5528 0.036858 GTGACTCTCTCCAGGTTGCC 60.037 60.000 0.00 0.00 0.00 4.52
4760 5539 2.749839 GGTTGCCTGCGCCACATA 60.750 61.111 4.18 0.00 32.28 2.29
4761 5540 2.120909 GGTTGCCTGCGCCACATAT 61.121 57.895 4.18 0.00 32.28 1.78
4762 5541 1.666209 GGTTGCCTGCGCCACATATT 61.666 55.000 4.18 0.00 32.28 1.28
4763 5542 0.248621 GTTGCCTGCGCCACATATTC 60.249 55.000 4.18 0.00 31.03 1.75
4764 5543 0.679321 TTGCCTGCGCCACATATTCA 60.679 50.000 4.18 0.00 0.00 2.57
4765 5544 1.356624 GCCTGCGCCACATATTCAC 59.643 57.895 4.18 0.00 0.00 3.18
4767 5546 0.464373 CCTGCGCCACATATTCACCT 60.464 55.000 4.18 0.00 0.00 4.00
4768 5547 0.940126 CTGCGCCACATATTCACCTC 59.060 55.000 4.18 0.00 0.00 3.85
4769 5548 0.541392 TGCGCCACATATTCACCTCT 59.459 50.000 4.18 0.00 0.00 3.69
4772 5551 3.181455 TGCGCCACATATTCACCTCTAAT 60.181 43.478 4.18 0.00 0.00 1.73
4831 5754 4.394300 GAAGAGCTTCAGCATGTAATGTGT 59.606 41.667 5.40 0.00 41.95 3.72
4832 5755 5.447010 GAAGAGCTTCAGCATGTAATGTGTC 60.447 44.000 5.40 0.00 41.95 3.67
4833 5756 8.561995 GAAGAGCTTCAGCATGTAATGTGTCG 62.562 46.154 5.40 0.00 41.95 4.35
4861 5784 2.925162 GAATCCTGAAGGCGGTCGGG 62.925 65.000 11.66 11.66 44.41 5.14
4863 5786 4.452733 CCTGAAGGCGGTCGGGAC 62.453 72.222 12.35 0.00 45.72 4.46
4884 5807 0.884704 ATTTCGCCGCAGACTGTTGT 60.885 50.000 3.99 0.00 0.00 3.32
4890 5813 1.663161 GCCGCAGACTGTTGTTTTAGC 60.663 52.381 3.99 0.00 0.00 3.09
4902 5825 7.051000 ACTGTTGTTTTAGCTTCTTCTCTTCT 58.949 34.615 0.00 0.00 0.00 2.85
4914 5837 6.073276 GCTTCTTCTCTTCTTTCTTCACCTTC 60.073 42.308 0.00 0.00 0.00 3.46
4916 5839 5.302059 TCTTCTCTTCTTTCTTCACCTTCGA 59.698 40.000 0.00 0.00 0.00 3.71
4982 5915 6.979238 GGTATTGACAACATCTACCTAGTCAC 59.021 42.308 8.02 0.00 35.92 3.67
5000 5933 2.814336 TCACTATCGATCATGAGGTCCG 59.186 50.000 0.00 2.54 0.00 4.79
5008 5941 0.970937 TCATGAGGTCCGACTCCCAC 60.971 60.000 0.00 0.00 36.66 4.61
5014 5947 3.770040 TCCGACTCCCACATGCCG 61.770 66.667 0.00 0.00 0.00 5.69
5176 6911 1.826487 GACCACCGGCCAAGTTGTT 60.826 57.895 0.00 0.00 0.00 2.83
5289 7024 1.758592 GTCCTGCTGGTGGTTGGTA 59.241 57.895 9.73 0.00 34.23 3.25
5290 7025 0.605589 GTCCTGCTGGTGGTTGGTAC 60.606 60.000 9.73 0.00 34.23 3.34
5291 7026 0.766674 TCCTGCTGGTGGTTGGTACT 60.767 55.000 9.73 0.00 34.23 2.73
5304 7039 3.200483 GTTGGTACTTTCTGGACGTTGT 58.800 45.455 0.00 0.00 0.00 3.32
5309 7044 1.329599 ACTTTCTGGACGTTGTTTCGC 59.670 47.619 0.00 0.00 0.00 4.70
5310 7045 0.658897 TTTCTGGACGTTGTTTCGCC 59.341 50.000 0.00 0.00 0.00 5.54
5312 7047 0.179067 TCTGGACGTTGTTTCGCCTT 60.179 50.000 0.00 0.00 0.00 4.35
5313 7048 0.661020 CTGGACGTTGTTTCGCCTTT 59.339 50.000 0.00 0.00 0.00 3.11
5314 7049 0.658897 TGGACGTTGTTTCGCCTTTC 59.341 50.000 0.00 0.00 0.00 2.62
5315 7050 0.383860 GGACGTTGTTTCGCCTTTCG 60.384 55.000 0.00 0.00 40.15 3.46
5316 7051 0.383860 GACGTTGTTTCGCCTTTCGG 60.384 55.000 0.00 0.00 39.05 4.30
5317 7052 1.082366 CGTTGTTTCGCCTTTCGGG 60.082 57.895 0.00 0.00 39.05 5.14
5318 7053 1.778027 CGTTGTTTCGCCTTTCGGGT 61.778 55.000 0.00 0.00 39.05 5.28
5319 7054 0.317519 GTTGTTTCGCCTTTCGGGTG 60.318 55.000 0.00 0.00 46.40 4.61
5360 7095 1.260561 CTGGTCTGTTTTGGTCGTTCG 59.739 52.381 0.00 0.00 0.00 3.95
5394 7129 2.362077 GACACTGATGGCAAACTGGTTT 59.638 45.455 0.00 0.00 32.03 3.27
5399 7134 3.820467 CTGATGGCAAACTGGTTTCTACA 59.180 43.478 0.00 0.00 0.00 2.74
5405 7140 4.379082 GGCAAACTGGTTTCTACATTACGG 60.379 45.833 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 124 0.101399 CAGGAGTAGCGCTCGATGTT 59.899 55.000 16.34 0.00 45.03 2.71
196 216 2.044555 CGCCAGTGGTCGAGGTAGA 61.045 63.158 17.68 0.00 0.00 2.59
327 368 1.671054 CGGTGATGTCGGGCTTTGT 60.671 57.895 0.00 0.00 0.00 2.83
410 457 2.646175 GCCCTAGGTGTCTGCGTCA 61.646 63.158 8.29 0.00 0.00 4.35
420 467 3.760035 CGACGTGCTGCCCTAGGT 61.760 66.667 8.29 0.00 0.00 3.08
617 730 2.246469 CAACAACATGTCCCCATTGGA 58.754 47.619 3.62 0.00 42.41 3.53
618 731 1.275856 CCAACAACATGTCCCCATTGG 59.724 52.381 0.00 5.55 0.00 3.16
619 732 1.338011 GCCAACAACATGTCCCCATTG 60.338 52.381 0.00 0.00 0.00 2.82
620 733 0.975887 GCCAACAACATGTCCCCATT 59.024 50.000 0.00 0.00 0.00 3.16
621 734 0.178938 TGCCAACAACATGTCCCCAT 60.179 50.000 0.00 0.00 0.00 4.00
622 735 1.112315 GTGCCAACAACATGTCCCCA 61.112 55.000 0.00 0.00 0.00 4.96
673 787 2.046314 ACGGGAGGGTGAAATGCG 60.046 61.111 0.00 0.00 0.00 4.73
679 793 0.539986 GCATTAAGACGGGAGGGTGA 59.460 55.000 0.00 0.00 0.00 4.02
680 794 0.251916 TGCATTAAGACGGGAGGGTG 59.748 55.000 0.00 0.00 0.00 4.61
681 795 0.988832 TTGCATTAAGACGGGAGGGT 59.011 50.000 0.00 0.00 0.00 4.34
684 798 9.796120 TTTATTATTTTTGCATTAAGACGGGAG 57.204 29.630 0.00 0.00 0.00 4.30
690 804 9.039870 CGCCCATTTATTATTTTTGCATTAAGA 57.960 29.630 0.00 0.00 0.00 2.10
691 805 8.281893 CCGCCCATTTATTATTTTTGCATTAAG 58.718 33.333 0.00 0.00 0.00 1.85
693 807 6.203723 GCCGCCCATTTATTATTTTTGCATTA 59.796 34.615 0.00 0.00 0.00 1.90
695 809 4.514816 GCCGCCCATTTATTATTTTTGCAT 59.485 37.500 0.00 0.00 0.00 3.96
696 810 3.873952 GCCGCCCATTTATTATTTTTGCA 59.126 39.130 0.00 0.00 0.00 4.08
697 811 3.249799 GGCCGCCCATTTATTATTTTTGC 59.750 43.478 0.00 0.00 0.00 3.68
698 812 3.492756 CGGCCGCCCATTTATTATTTTTG 59.507 43.478 14.67 0.00 0.00 2.44
717 831 1.369091 CTGGCCACAACATAGTCGGC 61.369 60.000 0.00 0.00 42.21 5.54
718 832 1.369091 GCTGGCCACAACATAGTCGG 61.369 60.000 0.00 0.00 0.00 4.79
787 922 1.606668 TCCTTTTGTTTAGTGCAGCGG 59.393 47.619 0.00 0.00 0.00 5.52
811 946 2.041206 GACTAATGGGAGGGACGGCC 62.041 65.000 0.00 0.00 0.00 6.13
812 947 1.446366 GACTAATGGGAGGGACGGC 59.554 63.158 0.00 0.00 0.00 5.68
813 948 1.408453 GGGACTAATGGGAGGGACGG 61.408 65.000 0.00 0.00 0.00 4.79
814 949 0.689745 TGGGACTAATGGGAGGGACG 60.690 60.000 0.00 0.00 0.00 4.79
815 950 1.700186 GATGGGACTAATGGGAGGGAC 59.300 57.143 0.00 0.00 0.00 4.46
816 951 1.761371 CGATGGGACTAATGGGAGGGA 60.761 57.143 0.00 0.00 0.00 4.20
817 952 0.687354 CGATGGGACTAATGGGAGGG 59.313 60.000 0.00 0.00 0.00 4.30
818 953 0.035458 GCGATGGGACTAATGGGAGG 59.965 60.000 0.00 0.00 0.00 4.30
819 954 0.035458 GGCGATGGGACTAATGGGAG 59.965 60.000 0.00 0.00 0.00 4.30
820 955 1.754380 CGGCGATGGGACTAATGGGA 61.754 60.000 0.00 0.00 0.00 4.37
821 956 1.301716 CGGCGATGGGACTAATGGG 60.302 63.158 0.00 0.00 0.00 4.00
822 957 1.961277 GCGGCGATGGGACTAATGG 60.961 63.158 12.98 0.00 0.00 3.16
823 958 2.310233 CGCGGCGATGGGACTAATG 61.310 63.158 19.16 0.00 0.00 1.90
824 959 2.029073 CGCGGCGATGGGACTAAT 59.971 61.111 19.16 0.00 0.00 1.73
825 960 4.884257 GCGCGGCGATGGGACTAA 62.884 66.667 28.54 0.00 0.00 2.24
864 999 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
865 1000 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
866 1001 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
867 1002 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
868 1003 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
869 1004 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
870 1005 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
871 1006 3.133721 GTGCTCTCTCTCTCTCTCTCTCT 59.866 52.174 0.00 0.00 0.00 3.10
872 1007 3.118629 TGTGCTCTCTCTCTCTCTCTCTC 60.119 52.174 0.00 0.00 0.00 3.20
873 1008 2.840038 TGTGCTCTCTCTCTCTCTCTCT 59.160 50.000 0.00 0.00 0.00 3.10
874 1009 2.939103 GTGTGCTCTCTCTCTCTCTCTC 59.061 54.545 0.00 0.00 0.00 3.20
875 1010 2.356125 GGTGTGCTCTCTCTCTCTCTCT 60.356 54.545 0.00 0.00 0.00 3.10
876 1011 2.017049 GGTGTGCTCTCTCTCTCTCTC 58.983 57.143 0.00 0.00 0.00 3.20
877 1012 1.340991 GGGTGTGCTCTCTCTCTCTCT 60.341 57.143 0.00 0.00 0.00 3.10
880 1015 0.530288 GTGGGTGTGCTCTCTCTCTC 59.470 60.000 0.00 0.00 0.00 3.20
1051 1189 4.410400 GGAGGCGAAGGTGGTGGG 62.410 72.222 0.00 0.00 0.00 4.61
1114 1252 0.105709 TGGTGTGTGTGGAGGAGAGA 60.106 55.000 0.00 0.00 0.00 3.10
1115 1253 0.034059 GTGGTGTGTGTGGAGGAGAG 59.966 60.000 0.00 0.00 0.00 3.20
1116 1254 1.744320 CGTGGTGTGTGTGGAGGAGA 61.744 60.000 0.00 0.00 0.00 3.71
1140 1280 2.480610 CCGGTTACCGCTAGCCGTA 61.481 63.158 19.48 10.59 46.86 4.02
1144 1284 4.151582 TGGCCGGTTACCGCTAGC 62.152 66.667 19.48 16.15 46.86 3.42
1180 1331 0.320697 GTAGTGGAGTGGTGGTGGAC 59.679 60.000 0.00 0.00 0.00 4.02
1181 1332 0.105401 TGTAGTGGAGTGGTGGTGGA 60.105 55.000 0.00 0.00 0.00 4.02
1246 1406 4.104738 GGGTGGATGGAATAAAGGATGAGA 59.895 45.833 0.00 0.00 0.00 3.27
1280 1440 0.924090 GATAGTGTGTAGCGCAGTGC 59.076 55.000 11.47 4.58 46.98 4.40
1284 1444 0.174845 GGTGGATAGTGTGTAGCGCA 59.825 55.000 11.47 0.00 0.00 6.09
1285 1445 0.174845 TGGTGGATAGTGTGTAGCGC 59.825 55.000 0.00 0.00 0.00 5.92
1287 1447 1.802880 CGCTGGTGGATAGTGTGTAGC 60.803 57.143 0.00 0.00 0.00 3.58
1290 1450 0.902984 TCCGCTGGTGGATAGTGTGT 60.903 55.000 0.00 0.00 31.53 3.72
1293 1453 0.387202 CTCTCCGCTGGTGGATAGTG 59.613 60.000 3.20 0.00 37.41 2.74
1294 1454 1.395826 GCTCTCCGCTGGTGGATAGT 61.396 60.000 14.19 0.00 37.41 2.12
1295 1455 1.365633 GCTCTCCGCTGGTGGATAG 59.634 63.158 10.10 10.10 37.41 2.08
1296 1456 1.381191 TGCTCTCCGCTGGTGGATA 60.381 57.895 3.20 0.00 37.41 2.59
1297 1457 2.685017 TGCTCTCCGCTGGTGGAT 60.685 61.111 3.20 0.00 37.41 3.41
1298 1458 3.385384 CTGCTCTCCGCTGGTGGA 61.385 66.667 2.77 2.77 40.11 4.02
1301 1461 4.079850 CTGCTGCTCTCCGCTGGT 62.080 66.667 0.00 0.00 40.11 4.00
1366 1526 2.838693 GAGTAGACGGCCTCCCCC 60.839 72.222 0.00 0.00 0.00 5.40
1432 1592 1.414181 CCGCTCTCTCTCTCTCTCTCT 59.586 57.143 0.00 0.00 0.00 3.10
1434 1594 0.179045 GCCGCTCTCTCTCTCTCTCT 60.179 60.000 0.00 0.00 0.00 3.10
1438 1598 2.515991 CGGCCGCTCTCTCTCTCT 60.516 66.667 14.67 0.00 0.00 3.10
1445 1605 3.902086 GTACCTCCGGCCGCTCTC 61.902 72.222 22.85 3.45 0.00 3.20
1455 1615 1.153229 GCCAACATCCGGTACCTCC 60.153 63.158 10.90 0.00 0.00 4.30
1469 1629 2.721167 CCGTCAGATCTCCGGCCAA 61.721 63.158 15.37 0.00 34.62 4.52
1496 1674 2.189521 CATCCGGTACCTGCACCC 59.810 66.667 10.90 0.00 34.90 4.61
1522 1721 2.565645 CGCCTCCTTCGGGATCGAT 61.566 63.158 0.00 0.00 45.51 3.59
1531 1730 3.718210 CTGGTACGCCGCCTCCTTC 62.718 68.421 0.00 0.00 37.67 3.46
1723 1926 0.911525 AGAGTGGGATCTGGGGTGTG 60.912 60.000 0.00 0.00 0.00 3.82
1749 1958 9.262358 CCGAAATGGTAAGGAAAAACAAATTAA 57.738 29.630 0.00 0.00 0.00 1.40
1751 1960 6.708502 CCCGAAATGGTAAGGAAAAACAAATT 59.291 34.615 0.00 0.00 35.15 1.82
1752 1961 6.227522 CCCGAAATGGTAAGGAAAAACAAAT 58.772 36.000 0.00 0.00 35.15 2.32
1753 1962 5.453480 CCCCGAAATGGTAAGGAAAAACAAA 60.453 40.000 0.00 0.00 35.15 2.83
1766 1976 2.037208 CCCTTGCCCCGAAATGGT 59.963 61.111 0.00 0.00 35.15 3.55
1847 2058 2.141448 GGGATCTCCGGACCCTTCC 61.141 68.421 19.22 13.35 40.39 3.46
1858 2069 2.042404 CTCCTGGCTGCTGGGATCTC 62.042 65.000 12.70 0.00 0.00 2.75
1870 2081 0.759060 ACCAACCAAAACCTCCTGGC 60.759 55.000 0.00 0.00 36.03 4.85
1873 2084 1.544759 CGCTACCAACCAAAACCTCCT 60.545 52.381 0.00 0.00 0.00 3.69
1874 2085 0.879090 CGCTACCAACCAAAACCTCC 59.121 55.000 0.00 0.00 0.00 4.30
1876 2087 0.179001 AGCGCTACCAACCAAAACCT 60.179 50.000 8.99 0.00 0.00 3.50
1891 2106 2.355717 ACAGAGTAGAAACAGAGCGC 57.644 50.000 0.00 0.00 0.00 5.92
1904 2119 0.320596 GCAGCAGAGCAGAACAGAGT 60.321 55.000 0.00 0.00 0.00 3.24
1961 2203 1.470098 CATTGGTTTTCTCCTCTGCCG 59.530 52.381 0.00 0.00 0.00 5.69
1965 2207 2.108952 ACAGCCATTGGTTTTCTCCTCT 59.891 45.455 4.26 0.00 0.00 3.69
1975 2217 0.039472 TACCATGCACAGCCATTGGT 59.961 50.000 10.54 10.54 33.88 3.67
1980 2222 0.330941 TGGATTACCATGCACAGCCA 59.669 50.000 0.00 0.00 41.77 4.75
1987 2229 9.591238 TCCTGTTCAGGATATGGATTACCATGC 62.591 44.444 16.47 4.27 43.64 4.06
2033 2333 3.704566 AGGAACATCAGCACCGTTATCTA 59.295 43.478 0.00 0.00 0.00 1.98
2037 2337 1.621317 TGAGGAACATCAGCACCGTTA 59.379 47.619 0.00 0.00 0.00 3.18
2039 2339 0.036952 CTGAGGAACATCAGCACCGT 60.037 55.000 3.66 0.00 40.26 4.83
2053 2353 1.915141 AAATTCACTGGTGGCTGAGG 58.085 50.000 0.70 0.00 0.00 3.86
2057 2357 1.963515 GGTCAAAATTCACTGGTGGCT 59.036 47.619 0.70 0.00 0.00 4.75
2058 2358 1.000843 GGGTCAAAATTCACTGGTGGC 59.999 52.381 0.70 0.00 0.00 5.01
2064 2364 2.036733 TCTCGTCGGGTCAAAATTCACT 59.963 45.455 0.00 0.00 0.00 3.41
2073 2373 1.470051 TCATTCATCTCGTCGGGTCA 58.530 50.000 0.00 0.00 0.00 4.02
2082 2382 5.669848 GCGGATTAGCGAATTCATTCATCTC 60.670 44.000 6.22 0.00 36.61 2.75
2084 2384 4.083855 TGCGGATTAGCGAATTCATTCATC 60.084 41.667 6.22 1.71 40.67 2.92
2085 2385 3.814842 TGCGGATTAGCGAATTCATTCAT 59.185 39.130 6.22 0.00 40.67 2.57
2086 2386 3.202097 TGCGGATTAGCGAATTCATTCA 58.798 40.909 6.22 0.00 40.67 2.57
2087 2387 3.878086 TGCGGATTAGCGAATTCATTC 57.122 42.857 6.22 0.00 40.67 2.67
2088 2388 4.516698 AGATTGCGGATTAGCGAATTCATT 59.483 37.500 6.22 0.00 40.67 2.57
2089 2389 4.067896 AGATTGCGGATTAGCGAATTCAT 58.932 39.130 6.22 0.00 40.67 2.57
2096 2396 3.369147 CCTATTCAGATTGCGGATTAGCG 59.631 47.826 0.00 0.00 40.67 4.26
2105 2405 5.635700 GGATACGTTCTCCTATTCAGATTGC 59.364 44.000 9.07 0.00 0.00 3.56
2106 2406 6.749139 TGGATACGTTCTCCTATTCAGATTG 58.251 40.000 15.46 0.00 42.51 2.67
2154 2455 1.486310 CTGGCTAGCATCAGGTGGTTA 59.514 52.381 18.24 0.00 39.69 2.85
2179 2480 3.134804 GGATGTTCCACTACTATGCACCT 59.865 47.826 0.00 0.00 36.28 4.00
2189 2490 6.126883 CCAAACTAGTATGGGATGTTCCACTA 60.127 42.308 0.00 0.00 39.97 2.74
2190 2491 5.339200 CCAAACTAGTATGGGATGTTCCACT 60.339 44.000 0.00 0.00 39.97 4.00
2191 2492 4.881850 CCAAACTAGTATGGGATGTTCCAC 59.118 45.833 0.00 0.00 39.97 4.02
2192 2493 4.538490 ACCAAACTAGTATGGGATGTTCCA 59.462 41.667 12.79 0.00 41.17 3.53
2193 2494 4.881850 CACCAAACTAGTATGGGATGTTCC 59.118 45.833 12.79 0.00 41.17 3.62
2194 2495 5.354234 CACACCAAACTAGTATGGGATGTTC 59.646 44.000 12.79 0.00 41.17 3.18
2195 2496 5.253330 CACACCAAACTAGTATGGGATGTT 58.747 41.667 12.79 0.00 41.17 2.71
2196 2497 4.324254 CCACACCAAACTAGTATGGGATGT 60.324 45.833 12.79 10.29 41.17 3.06
2197 2498 4.199310 CCACACCAAACTAGTATGGGATG 58.801 47.826 12.79 10.18 41.17 3.51
2198 2499 3.850173 ACCACACCAAACTAGTATGGGAT 59.150 43.478 12.79 0.57 41.17 3.85
2199 2500 3.253220 ACCACACCAAACTAGTATGGGA 58.747 45.455 12.79 0.00 41.17 4.37
2200 2501 3.713826 ACCACACCAAACTAGTATGGG 57.286 47.619 0.00 0.43 41.17 4.00
2201 2502 4.647611 TGAACCACACCAAACTAGTATGG 58.352 43.478 0.00 0.45 42.60 2.74
2202 2503 6.817765 AATGAACCACACCAAACTAGTATG 57.182 37.500 0.00 0.00 0.00 2.39
2203 2504 8.161425 AGTAAATGAACCACACCAAACTAGTAT 58.839 33.333 0.00 0.00 0.00 2.12
2204 2505 7.511268 AGTAAATGAACCACACCAAACTAGTA 58.489 34.615 0.00 0.00 0.00 1.82
2205 2506 6.362248 AGTAAATGAACCACACCAAACTAGT 58.638 36.000 0.00 0.00 0.00 2.57
2206 2507 6.877611 AGTAAATGAACCACACCAAACTAG 57.122 37.500 0.00 0.00 0.00 2.57
2235 2544 2.364632 TGGGTCACAACTCACAAACAG 58.635 47.619 0.00 0.00 28.22 3.16
2242 2551 2.825982 CCGGTGGGTCACAACTCA 59.174 61.111 0.00 0.00 35.86 3.41
2243 2552 2.668550 GCCGGTGGGTCACAACTC 60.669 66.667 1.90 0.00 35.86 3.01
2244 2553 4.265056 GGCCGGTGGGTCACAACT 62.265 66.667 1.90 0.00 38.05 3.16
2245 2554 2.193087 ATAGGCCGGTGGGTCACAAC 62.193 60.000 1.90 0.00 41.80 3.32
2246 2555 1.906105 GATAGGCCGGTGGGTCACAA 61.906 60.000 1.90 0.00 41.80 3.33
2247 2556 2.285069 ATAGGCCGGTGGGTCACA 60.285 61.111 1.90 0.00 41.80 3.58
2248 2557 1.906105 TTGATAGGCCGGTGGGTCAC 61.906 60.000 1.90 0.00 41.80 3.67
2249 2558 1.613928 TTGATAGGCCGGTGGGTCA 60.614 57.895 1.90 0.00 41.80 4.02
2250 2559 1.153229 GTTGATAGGCCGGTGGGTC 60.153 63.158 1.90 0.00 38.61 4.46
2251 2560 2.676265 GGTTGATAGGCCGGTGGGT 61.676 63.158 1.90 0.00 34.97 4.51
2256 2565 1.209504 TCAAGAAGGTTGATAGGCCGG 59.790 52.381 0.00 0.00 0.00 6.13
2257 2566 2.168521 TCTCAAGAAGGTTGATAGGCCG 59.831 50.000 0.00 0.00 0.00 6.13
2262 2571 9.219603 CAAACTATGTTCTCAAGAAGGTTGATA 57.780 33.333 2.42 0.00 34.48 2.15
2266 2575 6.064717 AGCAAACTATGTTCTCAAGAAGGTT 58.935 36.000 0.00 0.00 34.27 3.50
2270 2579 6.767902 ACTGAAGCAAACTATGTTCTCAAGAA 59.232 34.615 0.00 0.00 0.00 2.52
2277 2586 5.390567 CCCGTTACTGAAGCAAACTATGTTC 60.391 44.000 0.00 0.00 0.00 3.18
2314 2623 7.836842 AGGTTCAACCATATGGATAACAAAAC 58.163 34.615 28.77 18.32 41.95 2.43
2317 2626 7.178573 TCAAGGTTCAACCATATGGATAACAA 58.821 34.615 28.77 9.99 41.95 2.83
2319 2628 7.339466 AGTTCAAGGTTCAACCATATGGATAAC 59.661 37.037 28.77 23.70 41.95 1.89
2321 2630 6.828273 CAGTTCAAGGTTCAACCATATGGATA 59.172 38.462 28.77 9.84 41.95 2.59
2322 2631 5.653769 CAGTTCAAGGTTCAACCATATGGAT 59.346 40.000 28.77 14.36 41.95 3.41
2341 2650 1.531149 CATCCGTGTCACAACCAGTTC 59.469 52.381 3.42 0.00 0.00 3.01
2363 2672 1.616159 CGAACCCAGACCAAAACCAT 58.384 50.000 0.00 0.00 0.00 3.55
2373 2682 2.203788 AGCCAGACCGAACCCAGA 60.204 61.111 0.00 0.00 0.00 3.86
2375 2684 1.488705 ATTCAGCCAGACCGAACCCA 61.489 55.000 0.00 0.00 0.00 4.51
2377 2686 0.250513 AGATTCAGCCAGACCGAACC 59.749 55.000 0.00 0.00 0.00 3.62
2378 2687 1.363744 CAGATTCAGCCAGACCGAAC 58.636 55.000 0.00 0.00 0.00 3.95
2380 2689 0.614697 TCCAGATTCAGCCAGACCGA 60.615 55.000 0.00 0.00 0.00 4.69
2486 2925 3.626977 TGTTTGCATTGCGTGTTCTTAG 58.373 40.909 3.84 0.00 0.00 2.18
2496 2935 4.608890 GCATTACAGTGTTGTTTGCATTGC 60.609 41.667 0.00 0.46 41.31 3.56
2511 2950 2.355756 CCCACCAGAAATCGCATTACAG 59.644 50.000 0.00 0.00 0.00 2.74
2535 2974 2.101783 TCTTGCAATTACCTGGCATGG 58.898 47.619 0.00 0.00 37.39 3.66
2544 2983 4.857871 TGCATAGTCGTCTTGCAATTAC 57.142 40.909 0.00 0.33 42.95 1.89
2555 2994 4.638304 AGTAACAGGTTTTGCATAGTCGT 58.362 39.130 0.00 0.00 0.00 4.34
2556 2995 6.715344 TTAGTAACAGGTTTTGCATAGTCG 57.285 37.500 0.00 0.00 0.00 4.18
2580 3036 6.229936 AGCGTATTACAGGAAATAAGTGGA 57.770 37.500 0.00 0.00 0.00 4.02
2716 3323 2.873472 ACACAACGGTTCTGCGAAATTA 59.127 40.909 0.00 0.00 0.00 1.40
2822 3429 1.656441 CAGGCCCGCAAGCATTATC 59.344 57.895 0.00 0.00 0.00 1.75
2935 3550 1.740585 CACGGAACAACAACAACAGGA 59.259 47.619 0.00 0.00 0.00 3.86
2936 3551 1.740585 TCACGGAACAACAACAACAGG 59.259 47.619 0.00 0.00 0.00 4.00
2937 3552 3.119990 ACTTCACGGAACAACAACAACAG 60.120 43.478 0.00 0.00 0.00 3.16
2938 3553 2.814919 ACTTCACGGAACAACAACAACA 59.185 40.909 0.00 0.00 0.00 3.33
2939 3554 3.481112 ACTTCACGGAACAACAACAAC 57.519 42.857 0.00 0.00 0.00 3.32
2987 3606 1.544724 GCACCTTTCCTGGCACATAA 58.455 50.000 0.00 0.00 38.20 1.90
2998 3617 3.075148 GAGGTTACAAGAGGCACCTTTC 58.925 50.000 0.00 0.00 39.90 2.62
3117 3738 3.553508 CCACCATTTCAACAGCCTTCTTG 60.554 47.826 0.00 0.00 0.00 3.02
3303 3924 7.277098 GCATACTTTCTGCACAATTTCAATGAT 59.723 33.333 0.00 0.00 39.46 2.45
3327 3948 3.148412 ACATATGTCAAACTGTGCTGCA 58.852 40.909 1.41 0.00 0.00 4.41
3328 3949 3.837213 ACATATGTCAAACTGTGCTGC 57.163 42.857 1.41 0.00 0.00 5.25
3329 3950 6.902341 ACTAAACATATGTCAAACTGTGCTG 58.098 36.000 9.23 0.00 0.00 4.41
3330 3951 6.710295 TGACTAAACATATGTCAAACTGTGCT 59.290 34.615 9.23 0.00 37.71 4.40
3331 3952 6.898041 TGACTAAACATATGTCAAACTGTGC 58.102 36.000 9.23 0.00 37.71 4.57
3332 3953 8.720562 TGATGACTAAACATATGTCAAACTGTG 58.279 33.333 9.23 0.00 42.80 3.66
3333 3954 8.846943 TGATGACTAAACATATGTCAAACTGT 57.153 30.769 9.23 3.06 42.80 3.55
3393 4054 6.656270 CACCTGCATTATGTGTATGATGGTAT 59.344 38.462 0.00 0.00 32.52 2.73
3506 4167 1.873591 ACGTTGATGCTCTTCACCAAC 59.126 47.619 0.00 0.00 44.16 3.77
3629 4290 1.194781 ACGTGGGCTGATCTGTTCCT 61.195 55.000 12.56 0.00 0.00 3.36
3668 4329 6.933521 TGTACTAGAGAACGATATACTGACCC 59.066 42.308 0.00 0.00 0.00 4.46
3680 4347 6.269315 AGAAATCATGCTGTACTAGAGAACG 58.731 40.000 0.00 0.00 0.00 3.95
3691 4358 4.586884 ACATCACAGAGAAATCATGCTGT 58.413 39.130 0.00 0.00 41.90 4.40
3733 4407 2.733227 GCCTGCACATAATTCACACAGC 60.733 50.000 0.00 0.00 0.00 4.40
3754 4428 1.858041 CGCAATGATCTGGCTAGCG 59.142 57.895 9.00 0.00 37.68 4.26
3772 4446 2.670414 GCGGATCAGCTGATAGTATTGC 59.330 50.000 28.78 20.13 34.37 3.56
3821 4495 6.755141 CAGTTTGCATATGAAGGAAAATGGAG 59.245 38.462 6.97 0.00 38.26 3.86
3822 4496 6.211184 ACAGTTTGCATATGAAGGAAAATGGA 59.789 34.615 6.97 0.00 43.45 3.41
3823 4497 6.400568 ACAGTTTGCATATGAAGGAAAATGG 58.599 36.000 6.97 0.00 43.45 3.16
3825 4499 8.579850 TCTACAGTTTGCATATGAAGGAAAAT 57.420 30.769 6.97 0.00 0.00 1.82
3828 4502 6.946340 TCTCTACAGTTTGCATATGAAGGAA 58.054 36.000 6.97 0.00 0.00 3.36
3832 4518 9.844790 CAAAATTCTCTACAGTTTGCATATGAA 57.155 29.630 6.97 0.00 0.00 2.57
3837 4523 7.177216 TGGATCAAAATTCTCTACAGTTTGCAT 59.823 33.333 0.00 0.00 0.00 3.96
3844 4530 8.327941 TCTTGTTGGATCAAAATTCTCTACAG 57.672 34.615 0.00 0.00 0.00 2.74
3859 4545 9.308000 TGTACATAGGAATTTTTCTTGTTGGAT 57.692 29.630 0.00 0.00 0.00 3.41
3861 4547 9.410556 CTTGTACATAGGAATTTTTCTTGTTGG 57.589 33.333 0.00 0.00 0.00 3.77
3891 4577 9.964303 GTGCCAAATGTATTGTATCATTTCATA 57.036 29.630 0.00 0.00 40.70 2.15
3892 4578 8.476447 TGTGCCAAATGTATTGTATCATTTCAT 58.524 29.630 0.00 0.00 40.70 2.57
3893 4579 7.834803 TGTGCCAAATGTATTGTATCATTTCA 58.165 30.769 0.00 0.00 40.70 2.69
3894 4580 8.700722 TTGTGCCAAATGTATTGTATCATTTC 57.299 30.769 0.00 0.00 40.70 2.17
3895 4581 8.313292 ACTTGTGCCAAATGTATTGTATCATTT 58.687 29.630 0.00 0.00 42.53 2.32
3896 4582 7.760794 CACTTGTGCCAAATGTATTGTATCATT 59.239 33.333 0.00 0.00 36.07 2.57
3897 4583 7.093814 ACACTTGTGCCAAATGTATTGTATCAT 60.094 33.333 0.10 0.00 0.00 2.45
3898 4584 6.208402 ACACTTGTGCCAAATGTATTGTATCA 59.792 34.615 0.10 0.00 0.00 2.15
3899 4585 6.620678 ACACTTGTGCCAAATGTATTGTATC 58.379 36.000 0.10 0.00 0.00 2.24
3900 4586 6.588719 ACACTTGTGCCAAATGTATTGTAT 57.411 33.333 0.10 0.00 0.00 2.29
3901 4587 6.183360 ACAACACTTGTGCCAAATGTATTGTA 60.183 34.615 0.00 0.00 43.48 2.41
3902 4588 4.935352 ACACTTGTGCCAAATGTATTGT 57.065 36.364 0.10 0.00 0.00 2.71
3903 4589 5.049167 ACAACACTTGTGCCAAATGTATTG 58.951 37.500 3.11 2.48 43.48 1.90
3904 4590 5.275067 ACAACACTTGTGCCAAATGTATT 57.725 34.783 3.11 0.00 43.48 1.89
3905 4591 4.935352 ACAACACTTGTGCCAAATGTAT 57.065 36.364 3.11 0.00 43.48 2.29
3906 4592 4.727507 AACAACACTTGTGCCAAATGTA 57.272 36.364 3.11 0.00 44.59 2.29
3907 4593 3.608316 AACAACACTTGTGCCAAATGT 57.392 38.095 0.10 0.00 44.59 2.71
3908 4594 3.931468 TGAAACAACACTTGTGCCAAATG 59.069 39.130 0.10 0.00 44.59 2.32
3909 4595 4.183101 CTGAAACAACACTTGTGCCAAAT 58.817 39.130 0.10 0.00 44.59 2.32
3910 4596 3.006323 ACTGAAACAACACTTGTGCCAAA 59.994 39.130 0.10 0.00 44.59 3.28
3911 4597 2.560542 ACTGAAACAACACTTGTGCCAA 59.439 40.909 0.10 0.00 44.59 4.52
3912 4598 2.094803 CACTGAAACAACACTTGTGCCA 60.095 45.455 0.10 0.00 44.59 4.92
3913 4599 2.094752 ACACTGAAACAACACTTGTGCC 60.095 45.455 0.10 0.00 44.59 5.01
3914 4600 3.216147 ACACTGAAACAACACTTGTGC 57.784 42.857 0.10 0.00 44.59 4.57
3915 4601 5.116983 GTCAAACACTGAAACAACACTTGTG 59.883 40.000 0.00 0.00 44.59 3.33
3917 4603 5.218885 TGTCAAACACTGAAACAACACTTG 58.781 37.500 0.00 0.00 35.22 3.16
3918 4604 5.446143 TGTCAAACACTGAAACAACACTT 57.554 34.783 0.00 0.00 35.22 3.16
3919 4605 5.415701 AGATGTCAAACACTGAAACAACACT 59.584 36.000 0.00 0.00 35.22 3.55
3920 4606 5.640732 AGATGTCAAACACTGAAACAACAC 58.359 37.500 0.00 0.00 35.22 3.32
3921 4607 5.895636 AGATGTCAAACACTGAAACAACA 57.104 34.783 0.00 0.00 35.22 3.33
3922 4608 7.029563 AGAAAGATGTCAAACACTGAAACAAC 58.970 34.615 0.00 0.00 35.22 3.32
3923 4609 7.156876 AGAAAGATGTCAAACACTGAAACAA 57.843 32.000 0.00 0.00 35.22 2.83
3924 4610 6.757897 AGAAAGATGTCAAACACTGAAACA 57.242 33.333 0.00 0.00 35.22 2.83
3925 4611 7.218963 GTGAAGAAAGATGTCAAACACTGAAAC 59.781 37.037 0.00 0.00 35.22 2.78
3926 4612 7.250569 GTGAAGAAAGATGTCAAACACTGAAA 58.749 34.615 0.00 0.00 35.22 2.69
3927 4613 6.183360 GGTGAAGAAAGATGTCAAACACTGAA 60.183 38.462 0.00 0.00 35.22 3.02
3928 4614 5.296780 GGTGAAGAAAGATGTCAAACACTGA 59.703 40.000 0.00 0.00 0.00 3.41
3929 4615 5.506317 GGGTGAAGAAAGATGTCAAACACTG 60.506 44.000 0.00 0.00 0.00 3.66
3930 4616 4.580580 GGGTGAAGAAAGATGTCAAACACT 59.419 41.667 0.00 0.00 0.00 3.55
3931 4617 4.338118 TGGGTGAAGAAAGATGTCAAACAC 59.662 41.667 0.00 0.00 0.00 3.32
3932 4618 4.338118 GTGGGTGAAGAAAGATGTCAAACA 59.662 41.667 0.00 0.00 0.00 2.83
3933 4619 4.580580 AGTGGGTGAAGAAAGATGTCAAAC 59.419 41.667 0.00 0.00 0.00 2.93
3934 4620 4.792068 AGTGGGTGAAGAAAGATGTCAAA 58.208 39.130 0.00 0.00 0.00 2.69
3935 4621 4.437682 AGTGGGTGAAGAAAGATGTCAA 57.562 40.909 0.00 0.00 0.00 3.18
3952 4638 0.762418 TGTACCCCTGTGTGAAGTGG 59.238 55.000 0.00 0.00 0.00 4.00
4012 4698 2.586357 GCGTCGATGCCCTCCTTC 60.586 66.667 19.11 0.00 0.00 3.46
4255 4941 2.009774 CCCACGATCTTGTTGATGTCC 58.990 52.381 0.00 0.00 35.14 4.02
4424 5114 0.819259 GTCTCACCAAGCAAGCACCA 60.819 55.000 0.00 0.00 0.00 4.17
4425 5115 1.845809 CGTCTCACCAAGCAAGCACC 61.846 60.000 0.00 0.00 0.00 5.01
4450 5140 2.480419 ACGTGATGAAAGAAAGAAGGCG 59.520 45.455 0.00 0.00 0.00 5.52
4453 5143 7.588143 AGACATACGTGATGAAAGAAAGAAG 57.412 36.000 0.00 0.00 39.06 2.85
4461 5151 9.244799 GATACAACATAGACATACGTGATGAAA 57.755 33.333 0.00 0.00 39.06 2.69
4463 5153 8.166422 AGATACAACATAGACATACGTGATGA 57.834 34.615 0.00 0.00 39.06 2.92
4464 5154 8.694394 CAAGATACAACATAGACATACGTGATG 58.306 37.037 0.00 0.71 41.79 3.07
4465 5155 8.414003 ACAAGATACAACATAGACATACGTGAT 58.586 33.333 0.00 0.00 0.00 3.06
4466 5156 7.700656 CACAAGATACAACATAGACATACGTGA 59.299 37.037 0.00 0.00 0.00 4.35
4467 5157 7.488150 ACACAAGATACAACATAGACATACGTG 59.512 37.037 0.00 0.00 0.00 4.49
4468 5158 7.544622 ACACAAGATACAACATAGACATACGT 58.455 34.615 0.00 0.00 0.00 3.57
4469 5159 7.987268 ACACAAGATACAACATAGACATACG 57.013 36.000 0.00 0.00 0.00 3.06
4487 5177 7.559897 ACCCCTCCACAATAATAATTACACAAG 59.440 37.037 0.00 0.00 0.00 3.16
4501 5199 1.269012 CATTTGCACCCCTCCACAAT 58.731 50.000 0.00 0.00 0.00 2.71
4502 5200 0.105760 ACATTTGCACCCCTCCACAA 60.106 50.000 0.00 0.00 0.00 3.33
4503 5201 0.827089 CACATTTGCACCCCTCCACA 60.827 55.000 0.00 0.00 0.00 4.17
4517 5215 2.811873 GCAGGTCCTGACAGTTCACATT 60.812 50.000 23.77 0.00 32.44 2.71
4544 5242 5.177881 ACAGACGAAATGTACGTGCAAAATA 59.822 36.000 11.22 0.00 43.97 1.40
4545 5243 4.024387 ACAGACGAAATGTACGTGCAAAAT 60.024 37.500 11.22 0.00 43.97 1.82
4546 5244 3.310227 ACAGACGAAATGTACGTGCAAAA 59.690 39.130 11.22 0.00 43.97 2.44
4548 5246 2.219903 CACAGACGAAATGTACGTGCAA 59.780 45.455 11.22 0.00 43.97 4.08
4550 5248 1.126113 CCACAGACGAAATGTACGTGC 59.874 52.381 0.00 0.00 43.97 5.34
4551 5249 2.400399 ACCACAGACGAAATGTACGTG 58.600 47.619 0.00 0.00 43.97 4.49
4552 5250 2.806608 ACCACAGACGAAATGTACGT 57.193 45.000 0.00 0.00 46.58 3.57
4553 5251 3.121279 CAGAACCACAGACGAAATGTACG 59.879 47.826 0.00 0.00 0.00 3.67
4554 5252 4.056050 ACAGAACCACAGACGAAATGTAC 58.944 43.478 0.00 0.00 0.00 2.90
4555 5253 4.330944 ACAGAACCACAGACGAAATGTA 57.669 40.909 0.00 0.00 0.00 2.29
4556 5254 3.194005 ACAGAACCACAGACGAAATGT 57.806 42.857 0.00 0.00 0.00 2.71
4557 5255 4.055360 TGTACAGAACCACAGACGAAATG 58.945 43.478 0.00 0.00 0.00 2.32
4558 5256 4.307432 CTGTACAGAACCACAGACGAAAT 58.693 43.478 18.45 0.00 43.99 2.17
4559 5257 3.491964 CCTGTACAGAACCACAGACGAAA 60.492 47.826 24.68 0.00 43.99 3.46
4560 5258 2.035449 CCTGTACAGAACCACAGACGAA 59.965 50.000 24.68 0.00 43.99 3.85
4562 5260 1.611977 TCCTGTACAGAACCACAGACG 59.388 52.381 24.68 3.36 43.99 4.18
4563 5261 3.555168 CCTTCCTGTACAGAACCACAGAC 60.555 52.174 24.68 0.00 43.99 3.51
4564 5262 2.632996 CCTTCCTGTACAGAACCACAGA 59.367 50.000 24.68 7.99 43.99 3.41
4565 5263 2.632996 TCCTTCCTGTACAGAACCACAG 59.367 50.000 24.68 5.59 41.51 3.66
4566 5264 2.367567 GTCCTTCCTGTACAGAACCACA 59.632 50.000 24.68 0.54 0.00 4.17
4567 5265 2.367567 TGTCCTTCCTGTACAGAACCAC 59.632 50.000 24.68 13.30 0.00 4.16
4576 5310 1.431633 TGGAGAGGTGTCCTTCCTGTA 59.568 52.381 13.68 0.00 37.52 2.74
4583 5317 3.199290 CTCGATGGAGAGGTGTCCT 57.801 57.895 0.00 0.00 43.27 3.85
4597 5331 2.847441 ACAGATACATAGCGACCTCGA 58.153 47.619 0.00 0.00 43.02 4.04
4605 5339 6.037610 AGCTAAGCAAACAACAGATACATAGC 59.962 38.462 0.00 0.00 33.02 2.97
4618 5352 2.135139 CGACACAGAGCTAAGCAAACA 58.865 47.619 0.00 0.00 0.00 2.83
4631 5366 2.400399 ACACGTAACATTCCGACACAG 58.600 47.619 0.00 0.00 0.00 3.66
4633 5368 3.001533 ACAAACACGTAACATTCCGACAC 59.998 43.478 0.00 0.00 0.00 3.67
4642 5377 6.315642 TCAAAGGATACAACAAACACGTAACA 59.684 34.615 0.00 0.00 41.41 2.41
4651 5386 8.363390 TGCAATACATTCAAAGGATACAACAAA 58.637 29.630 0.00 0.00 41.41 2.83
4675 5454 4.318332 TGTCCAGCAGCACTATATAATGC 58.682 43.478 8.11 8.11 42.39 3.56
4692 5471 1.034838 AGCTTTGGCAACGTTGTCCA 61.035 50.000 28.84 28.84 41.70 4.02
4698 5477 1.360192 GCTGAAGCTTTGGCAACGT 59.640 52.632 16.26 0.00 41.70 3.99
4700 5479 1.269936 ACATGCTGAAGCTTTGGCAAC 60.270 47.619 23.91 5.89 42.66 4.17
4701 5480 1.042229 ACATGCTGAAGCTTTGGCAA 58.958 45.000 23.91 0.00 42.66 4.52
4702 5481 1.908344 TACATGCTGAAGCTTTGGCA 58.092 45.000 22.87 22.87 42.66 4.92
4703 5482 3.184541 CATTACATGCTGAAGCTTTGGC 58.815 45.455 14.87 14.87 42.66 4.52
4716 5495 1.588404 GAGTCACGGACGCATTACATG 59.412 52.381 0.00 0.00 37.67 3.21
4717 5496 1.476891 AGAGTCACGGACGCATTACAT 59.523 47.619 9.60 0.00 37.67 2.29
4718 5497 0.885879 AGAGTCACGGACGCATTACA 59.114 50.000 9.60 0.00 37.67 2.41
4722 5501 1.658686 GGAGAGAGTCACGGACGCAT 61.659 60.000 9.60 0.00 37.67 4.73
4723 5502 2.333417 GGAGAGAGTCACGGACGCA 61.333 63.158 9.60 0.00 37.67 5.24
4724 5503 2.259875 CTGGAGAGAGTCACGGACGC 62.260 65.000 0.00 0.00 37.67 5.19
4725 5504 1.649390 CCTGGAGAGAGTCACGGACG 61.649 65.000 0.00 0.00 37.67 4.79
4727 5506 0.112606 AACCTGGAGAGAGTCACGGA 59.887 55.000 0.00 0.00 0.00 4.69
4729 5508 0.389166 GCAACCTGGAGAGAGTCACG 60.389 60.000 0.00 0.00 0.00 4.35
4731 5510 0.178921 AGGCAACCTGGAGAGAGTCA 60.179 55.000 0.00 0.00 29.57 3.41
4748 5527 0.464373 AGGTGAATATGTGGCGCAGG 60.464 55.000 10.83 0.00 0.00 4.85
4749 5528 0.940126 GAGGTGAATATGTGGCGCAG 59.060 55.000 10.83 0.00 0.00 5.18
4751 5530 2.526304 TAGAGGTGAATATGTGGCGC 57.474 50.000 0.00 0.00 0.00 6.53
4752 5531 4.449068 GTCATTAGAGGTGAATATGTGGCG 59.551 45.833 0.00 0.00 0.00 5.69
4753 5532 5.368145 TGTCATTAGAGGTGAATATGTGGC 58.632 41.667 0.00 0.00 0.00 5.01
4755 5534 7.412853 GCTTTGTCATTAGAGGTGAATATGTG 58.587 38.462 0.00 0.00 0.00 3.21
4757 5536 6.016777 GGGCTTTGTCATTAGAGGTGAATATG 60.017 42.308 0.00 0.00 0.00 1.78
4758 5537 6.064717 GGGCTTTGTCATTAGAGGTGAATAT 58.935 40.000 0.00 0.00 0.00 1.28
4760 5539 4.273318 GGGCTTTGTCATTAGAGGTGAAT 58.727 43.478 0.00 0.00 0.00 2.57
4761 5540 3.561313 GGGGCTTTGTCATTAGAGGTGAA 60.561 47.826 0.00 0.00 0.00 3.18
4762 5541 2.026262 GGGGCTTTGTCATTAGAGGTGA 60.026 50.000 0.00 0.00 0.00 4.02
4763 5542 2.290896 TGGGGCTTTGTCATTAGAGGTG 60.291 50.000 0.00 0.00 0.00 4.00
4764 5543 1.992557 TGGGGCTTTGTCATTAGAGGT 59.007 47.619 0.00 0.00 0.00 3.85
4765 5544 2.755103 GTTGGGGCTTTGTCATTAGAGG 59.245 50.000 0.00 0.00 0.00 3.69
4767 5546 2.378547 AGGTTGGGGCTTTGTCATTAGA 59.621 45.455 0.00 0.00 0.00 2.10
4768 5547 2.755103 GAGGTTGGGGCTTTGTCATTAG 59.245 50.000 0.00 0.00 0.00 1.73
4769 5548 2.556559 GGAGGTTGGGGCTTTGTCATTA 60.557 50.000 0.00 0.00 0.00 1.90
4772 5551 1.152830 GGAGGTTGGGGCTTTGTCA 59.847 57.895 0.00 0.00 0.00 3.58
4811 5734 3.242220 CGACACATTACATGCTGAAGCTC 60.242 47.826 3.61 0.00 42.66 4.09
4815 5738 3.000041 GGTCGACACATTACATGCTGAA 59.000 45.455 18.91 0.00 0.00 3.02
4816 5739 2.233676 AGGTCGACACATTACATGCTGA 59.766 45.455 18.91 0.00 0.00 4.26
4819 5742 3.000041 TCAAGGTCGACACATTACATGC 59.000 45.455 18.91 0.00 0.00 4.06
4820 5743 4.929211 TCTTCAAGGTCGACACATTACATG 59.071 41.667 18.91 2.06 0.00 3.21
4821 5744 5.147330 TCTTCAAGGTCGACACATTACAT 57.853 39.130 18.91 0.00 0.00 2.29
4822 5745 4.594123 TCTTCAAGGTCGACACATTACA 57.406 40.909 18.91 0.00 0.00 2.41
4823 5746 5.063564 GGATTCTTCAAGGTCGACACATTAC 59.936 44.000 18.91 0.00 0.00 1.89
4824 5747 5.046591 AGGATTCTTCAAGGTCGACACATTA 60.047 40.000 18.91 0.00 0.00 1.90
4825 5748 4.003648 GGATTCTTCAAGGTCGACACATT 58.996 43.478 18.91 5.98 0.00 2.71
4826 5749 3.261897 AGGATTCTTCAAGGTCGACACAT 59.738 43.478 18.91 0.00 0.00 3.21
4827 5750 2.632996 AGGATTCTTCAAGGTCGACACA 59.367 45.455 18.91 0.00 0.00 3.72
4828 5751 2.996621 CAGGATTCTTCAAGGTCGACAC 59.003 50.000 18.91 6.91 0.00 3.67
4831 5754 3.055819 CCTTCAGGATTCTTCAAGGTCGA 60.056 47.826 1.37 0.00 37.39 4.20
4832 5755 3.265791 CCTTCAGGATTCTTCAAGGTCG 58.734 50.000 1.37 0.00 37.39 4.79
4833 5756 3.013219 GCCTTCAGGATTCTTCAAGGTC 58.987 50.000 9.46 0.86 36.71 3.85
4834 5757 2.616510 CGCCTTCAGGATTCTTCAAGGT 60.617 50.000 9.46 0.00 36.71 3.50
4839 5762 1.657822 GACCGCCTTCAGGATTCTTC 58.342 55.000 0.00 0.00 37.39 2.87
4861 5784 1.741770 AGTCTGCGGCGAAATGGTC 60.742 57.895 12.98 0.00 0.00 4.02
4863 5786 1.577328 AACAGTCTGCGGCGAAATGG 61.577 55.000 12.98 0.00 0.00 3.16
4865 5788 0.884704 ACAACAGTCTGCGGCGAAAT 60.885 50.000 12.98 0.00 0.00 2.17
4866 5789 1.092921 AACAACAGTCTGCGGCGAAA 61.093 50.000 12.98 0.00 0.00 3.46
4867 5790 1.092921 AAACAACAGTCTGCGGCGAA 61.093 50.000 12.98 0.00 0.00 4.70
4868 5791 1.092921 AAAACAACAGTCTGCGGCGA 61.093 50.000 12.98 0.00 0.00 5.54
4869 5792 0.584396 TAAAACAACAGTCTGCGGCG 59.416 50.000 0.51 0.51 0.00 6.46
4870 5793 1.663161 GCTAAAACAACAGTCTGCGGC 60.663 52.381 0.00 0.00 0.00 6.53
4871 5794 1.873591 AGCTAAAACAACAGTCTGCGG 59.126 47.619 0.00 0.00 0.00 5.69
4872 5795 3.248602 AGAAGCTAAAACAACAGTCTGCG 59.751 43.478 0.00 0.00 0.00 5.18
4884 5807 8.831550 GTGAAGAAAGAAGAGAAGAAGCTAAAA 58.168 33.333 0.00 0.00 0.00 1.52
4890 5813 6.145371 CGAAGGTGAAGAAAGAAGAGAAGAAG 59.855 42.308 0.00 0.00 0.00 2.85
4925 5848 9.655769 CTGTTCCTCAATTAATTATCATGTTCG 57.344 33.333 0.00 0.00 0.00 3.95
4926 5849 9.455847 GCTGTTCCTCAATTAATTATCATGTTC 57.544 33.333 0.00 0.00 0.00 3.18
4982 5915 3.078097 AGTCGGACCTCATGATCGATAG 58.922 50.000 4.14 0.00 32.46 2.08
5000 5933 2.509336 CGTCGGCATGTGGGAGTC 60.509 66.667 0.00 0.00 0.00 3.36
5008 5941 1.209128 GAATGTAGGACGTCGGCATG 58.791 55.000 9.92 0.00 0.00 4.06
5014 5947 2.029623 TGGCTAGGAATGTAGGACGTC 58.970 52.381 7.13 7.13 0.00 4.34
5074 6809 1.005294 CAAGTGGAGCACGCATTTGC 61.005 55.000 0.00 0.00 43.34 3.68
5077 6812 0.593128 GAACAAGTGGAGCACGCATT 59.407 50.000 0.00 0.00 39.64 3.56
5130 6865 4.163268 TGTTACAGGTATAGATGCCAAGCA 59.837 41.667 0.00 0.00 44.86 3.91
5176 6911 3.263170 AGTTGTGTAGCACCCATATGTCA 59.737 43.478 1.24 0.00 32.73 3.58
5248 6983 1.385206 AGGCCTCCCCCTGATTCTC 60.385 63.158 0.00 0.00 32.84 2.87
5249 6984 2.798090 AGGCCTCCCCCTGATTCT 59.202 61.111 0.00 0.00 32.84 2.40
5289 7024 1.329599 GCGAAACAACGTCCAGAAAGT 59.670 47.619 0.00 0.00 35.59 2.66
5290 7025 1.333791 GGCGAAACAACGTCCAGAAAG 60.334 52.381 0.00 0.00 35.59 2.62
5291 7026 0.658897 GGCGAAACAACGTCCAGAAA 59.341 50.000 0.00 0.00 35.59 2.52
5310 7045 2.081462 GTTACCACCATCACCCGAAAG 58.919 52.381 0.00 0.00 0.00 2.62
5312 7047 0.037139 CGTTACCACCATCACCCGAA 60.037 55.000 0.00 0.00 0.00 4.30
5313 7048 1.592743 CGTTACCACCATCACCCGA 59.407 57.895 0.00 0.00 0.00 5.14
5314 7049 2.104253 GCGTTACCACCATCACCCG 61.104 63.158 0.00 0.00 0.00 5.28
5315 7050 2.104253 CGCGTTACCACCATCACCC 61.104 63.158 0.00 0.00 0.00 4.61
5316 7051 2.746803 GCGCGTTACCACCATCACC 61.747 63.158 8.43 0.00 0.00 4.02
5317 7052 1.693083 GAGCGCGTTACCACCATCAC 61.693 60.000 8.43 0.00 0.00 3.06
5318 7053 1.447140 GAGCGCGTTACCACCATCA 60.447 57.895 8.43 0.00 0.00 3.07
5319 7054 0.739813 AAGAGCGCGTTACCACCATC 60.740 55.000 8.43 0.00 0.00 3.51
5320 7055 1.019278 CAAGAGCGCGTTACCACCAT 61.019 55.000 8.43 0.00 0.00 3.55
5321 7056 1.666553 CAAGAGCGCGTTACCACCA 60.667 57.895 8.43 0.00 0.00 4.17
5322 7057 3.023591 GCAAGAGCGCGTTACCACC 62.024 63.158 8.43 0.00 0.00 4.61
5323 7058 2.474712 GCAAGAGCGCGTTACCAC 59.525 61.111 8.43 0.00 0.00 4.16
5360 7095 5.801947 GCCATCAGTGTCAATGTAAAACATC 59.198 40.000 0.00 0.00 37.97 3.06
5394 7129 1.480789 TGGCAGCTCCGTAATGTAGA 58.519 50.000 0.00 0.00 37.80 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.