Multiple sequence alignment - TraesCS3A01G022100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G022100 chr3A 100.000 2806 0 0 1 2806 12496184 12493379 0.000000e+00 5182.0
1 TraesCS3A01G022100 chr3A 79.026 267 38 9 429 677 597827594 597827328 1.730000e-37 167.0
2 TraesCS3A01G022100 chr3A 77.857 280 41 14 418 677 651512315 651512037 1.350000e-33 154.0
3 TraesCS3A01G022100 chr3D 92.203 1180 58 20 803 1950 8327815 8328992 0.000000e+00 1639.0
4 TraesCS3A01G022100 chr3D 87.668 446 17 15 1 419 8327214 8327648 4.200000e-133 484.0
5 TraesCS3A01G022100 chr3D 82.258 248 27 9 2311 2542 8329924 8330170 6.130000e-47 198.0
6 TraesCS3A01G022100 chr3B 89.612 1290 81 29 802 2043 10221169 10222453 0.000000e+00 1591.0
7 TraesCS3A01G022100 chr3B 91.667 384 14 8 2 374 10219041 10219417 1.490000e-142 516.0
8 TraesCS3A01G022100 chr3B 90.566 53 2 3 370 419 10219441 10219493 1.800000e-07 67.6
9 TraesCS3A01G022100 chr3B 96.970 33 1 0 698 730 10219528 10219560 3.900000e-04 56.5
10 TraesCS3A01G022100 chr2B 80.970 268 40 10 418 677 214653443 214653179 4.740000e-48 202.0
11 TraesCS3A01G022100 chr2B 79.286 280 35 13 419 677 632921438 632921161 1.030000e-39 174.0
12 TraesCS3A01G022100 chr5A 80.357 280 36 9 416 677 357567106 357567384 7.930000e-46 195.0
13 TraesCS3A01G022100 chr5A 80.808 198 33 4 485 677 527923347 527923544 1.740000e-32 150.0
14 TraesCS3A01G022100 chr7A 81.910 199 30 5 485 677 36145419 36145221 2.240000e-36 163.0
15 TraesCS3A01G022100 chr7A 82.727 110 19 0 2307 2416 93136085 93136194 6.400000e-17 99.0
16 TraesCS3A01G022100 chr7B 80.882 204 29 8 421 617 718951086 718951286 4.840000e-33 152.0
17 TraesCS3A01G022100 chr2A 78.788 231 36 8 418 635 67969423 67969653 2.910000e-30 143.0
18 TraesCS3A01G022100 chr2A 80.303 198 31 8 485 675 591274900 591274704 2.910000e-30 143.0
19 TraesCS3A01G022100 chr4B 83.929 112 14 4 2306 2416 136052135 136052243 1.370000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G022100 chr3A 12493379 12496184 2805 True 5182.000000 5182 100.000000 1 2806 1 chr3A.!!$R1 2805
1 TraesCS3A01G022100 chr3D 8327214 8330170 2956 False 773.666667 1639 87.376333 1 2542 3 chr3D.!!$F1 2541
2 TraesCS3A01G022100 chr3B 10219041 10222453 3412 False 557.775000 1591 92.203750 2 2043 4 chr3B.!!$F1 2041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
902 2544 0.036765 TGCCACCACGTATTCTGACC 60.037 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2608 4903 0.03582 TGGTCATCCCGTAAACCAGC 60.036 55.0 0.0 0.0 36.88 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 247 9.019656 AGCACATATATATCCGATAGAAGGATC 57.980 37.037 0.50 0.00 42.62 3.36
278 280 2.866156 TGAAGCTGTGAAGCATATACGC 59.134 45.455 0.00 0.00 37.25 4.42
279 281 2.602257 AGCTGTGAAGCATATACGCA 57.398 45.000 0.00 0.00 37.25 5.24
304 306 3.244526 ACCCTTCCAAAATCAACAATGCC 60.245 43.478 0.00 0.00 0.00 4.40
316 318 1.813513 ACAATGCCACAGCTACAGAC 58.186 50.000 0.00 0.00 40.80 3.51
346 357 1.220749 GCAGGATGACACGCCCTTA 59.779 57.895 0.00 0.00 39.69 2.69
348 359 1.871080 CAGGATGACACGCCCTTATC 58.129 55.000 0.00 0.00 39.69 1.75
367 378 6.779049 CCTTATCTGATTGGAAATGATGGGAA 59.221 38.462 0.00 0.00 0.00 3.97
370 381 6.931790 TCTGATTGGAAATGATGGGAAAAA 57.068 33.333 0.00 0.00 0.00 1.94
372 383 6.052405 TGATTGGAAATGATGGGAAAAAGG 57.948 37.500 0.00 0.00 0.00 3.11
373 384 5.784390 TGATTGGAAATGATGGGAAAAAGGA 59.216 36.000 0.00 0.00 0.00 3.36
374 385 6.444493 TGATTGGAAATGATGGGAAAAAGGAT 59.556 34.615 0.00 0.00 0.00 3.24
375 386 6.700845 TTGGAAATGATGGGAAAAAGGATT 57.299 33.333 0.00 0.00 0.00 3.01
376 387 7.805083 TTGGAAATGATGGGAAAAAGGATTA 57.195 32.000 0.00 0.00 0.00 1.75
377 388 7.422465 TGGAAATGATGGGAAAAAGGATTAG 57.578 36.000 0.00 0.00 0.00 1.73
385 431 3.078837 GGAAAAAGGATTAGTGCGGTGA 58.921 45.455 0.00 0.00 0.00 4.02
418 464 6.564854 CGTAGGTTTCATCCGTAAGTTTAG 57.435 41.667 0.00 0.00 0.00 1.85
419 465 5.517770 CGTAGGTTTCATCCGTAAGTTTAGG 59.482 44.000 0.00 0.00 0.00 2.69
420 466 4.259356 AGGTTTCATCCGTAAGTTTAGGC 58.741 43.478 0.00 0.00 0.00 3.93
421 467 3.376234 GGTTTCATCCGTAAGTTTAGGCC 59.624 47.826 0.00 0.00 0.00 5.19
422 468 4.259356 GTTTCATCCGTAAGTTTAGGCCT 58.741 43.478 11.78 11.78 0.00 5.19
423 469 3.814005 TCATCCGTAAGTTTAGGCCTC 57.186 47.619 9.68 0.00 0.00 4.70
424 470 2.433239 TCATCCGTAAGTTTAGGCCTCC 59.567 50.000 9.68 0.00 0.00 4.30
425 471 2.242882 TCCGTAAGTTTAGGCCTCCT 57.757 50.000 9.68 0.00 37.71 3.69
426 472 2.543635 TCCGTAAGTTTAGGCCTCCTT 58.456 47.619 9.68 13.02 34.61 3.36
427 473 2.498885 TCCGTAAGTTTAGGCCTCCTTC 59.501 50.000 9.68 0.00 34.61 3.46
428 474 2.537401 CGTAAGTTTAGGCCTCCTTCG 58.463 52.381 9.68 11.77 34.61 3.79
429 475 2.165030 CGTAAGTTTAGGCCTCCTTCGA 59.835 50.000 9.68 0.00 34.61 3.71
430 476 3.181478 CGTAAGTTTAGGCCTCCTTCGAT 60.181 47.826 9.68 0.00 34.61 3.59
431 477 4.679905 CGTAAGTTTAGGCCTCCTTCGATT 60.680 45.833 9.68 0.00 34.61 3.34
432 478 3.545366 AGTTTAGGCCTCCTTCGATTC 57.455 47.619 9.68 0.00 34.61 2.52
433 479 2.838202 AGTTTAGGCCTCCTTCGATTCA 59.162 45.455 9.68 0.00 34.61 2.57
434 480 3.456277 AGTTTAGGCCTCCTTCGATTCAT 59.544 43.478 9.68 0.00 34.61 2.57
435 481 4.654262 AGTTTAGGCCTCCTTCGATTCATA 59.346 41.667 9.68 0.00 34.61 2.15
436 482 5.130477 AGTTTAGGCCTCCTTCGATTCATAA 59.870 40.000 9.68 0.00 34.61 1.90
437 483 3.760580 AGGCCTCCTTCGATTCATAAG 57.239 47.619 0.00 0.00 0.00 1.73
438 484 3.309296 AGGCCTCCTTCGATTCATAAGA 58.691 45.455 0.00 0.00 0.00 2.10
439 485 3.906846 AGGCCTCCTTCGATTCATAAGAT 59.093 43.478 0.00 0.00 0.00 2.40
440 486 5.087323 AGGCCTCCTTCGATTCATAAGATA 58.913 41.667 0.00 0.00 0.00 1.98
441 487 5.186797 AGGCCTCCTTCGATTCATAAGATAG 59.813 44.000 0.00 0.00 0.00 2.08
442 488 5.415221 GCCTCCTTCGATTCATAAGATAGG 58.585 45.833 0.00 10.03 32.83 2.57
443 489 5.186021 GCCTCCTTCGATTCATAAGATAGGA 59.814 44.000 14.65 0.00 32.03 2.94
444 490 6.127196 GCCTCCTTCGATTCATAAGATAGGAT 60.127 42.308 14.65 0.00 32.03 3.24
445 491 7.580495 GCCTCCTTCGATTCATAAGATAGGATT 60.580 40.741 14.65 0.00 32.03 3.01
446 492 8.972127 CCTCCTTCGATTCATAAGATAGGATTA 58.028 37.037 0.00 0.00 32.03 1.75
558 604 6.748333 TTTTTCATTGAGTCTAGGCTCATG 57.252 37.500 26.91 23.46 43.99 3.07
559 605 5.426689 TTTCATTGAGTCTAGGCTCATGT 57.573 39.130 26.91 16.10 43.99 3.21
560 606 5.426689 TTCATTGAGTCTAGGCTCATGTT 57.573 39.130 26.91 12.69 43.99 2.71
561 607 5.426689 TCATTGAGTCTAGGCTCATGTTT 57.573 39.130 26.91 10.30 43.99 2.83
562 608 5.181009 TCATTGAGTCTAGGCTCATGTTTG 58.819 41.667 26.91 20.03 43.99 2.93
563 609 4.623932 TTGAGTCTAGGCTCATGTTTGT 57.376 40.909 26.91 0.00 43.99 2.83
564 610 4.623932 TGAGTCTAGGCTCATGTTTGTT 57.376 40.909 23.07 0.00 40.23 2.83
565 611 4.973168 TGAGTCTAGGCTCATGTTTGTTT 58.027 39.130 23.07 0.00 40.23 2.83
566 612 5.376625 TGAGTCTAGGCTCATGTTTGTTTT 58.623 37.500 23.07 0.00 40.23 2.43
567 613 5.827797 TGAGTCTAGGCTCATGTTTGTTTTT 59.172 36.000 23.07 0.00 40.23 1.94
568 614 6.017109 TGAGTCTAGGCTCATGTTTGTTTTTC 60.017 38.462 23.07 0.00 40.23 2.29
569 615 6.064717 AGTCTAGGCTCATGTTTGTTTTTCT 58.935 36.000 0.00 0.00 0.00 2.52
570 616 6.547510 AGTCTAGGCTCATGTTTGTTTTTCTT 59.452 34.615 0.00 0.00 0.00 2.52
571 617 7.068716 AGTCTAGGCTCATGTTTGTTTTTCTTT 59.931 33.333 0.00 0.00 0.00 2.52
572 618 7.168135 GTCTAGGCTCATGTTTGTTTTTCTTTG 59.832 37.037 0.00 0.00 0.00 2.77
573 619 5.976458 AGGCTCATGTTTGTTTTTCTTTGA 58.024 33.333 0.00 0.00 0.00 2.69
574 620 6.405538 AGGCTCATGTTTGTTTTTCTTTGAA 58.594 32.000 0.00 0.00 0.00 2.69
575 621 6.878389 AGGCTCATGTTTGTTTTTCTTTGAAA 59.122 30.769 0.00 0.00 0.00 2.69
576 622 7.553760 AGGCTCATGTTTGTTTTTCTTTGAAAT 59.446 29.630 0.00 0.00 0.00 2.17
577 623 7.641020 GGCTCATGTTTGTTTTTCTTTGAAATG 59.359 33.333 0.00 0.00 0.00 2.32
578 624 8.177013 GCTCATGTTTGTTTTTCTTTGAAATGT 58.823 29.630 0.00 0.00 0.00 2.71
579 625 9.480538 CTCATGTTTGTTTTTCTTTGAAATGTG 57.519 29.630 0.00 0.00 0.00 3.21
580 626 9.212641 TCATGTTTGTTTTTCTTTGAAATGTGA 57.787 25.926 0.00 0.00 0.00 3.58
581 627 9.823098 CATGTTTGTTTTTCTTTGAAATGTGAA 57.177 25.926 0.00 0.00 0.00 3.18
583 629 8.502387 TGTTTGTTTTTCTTTGAAATGTGAAGG 58.498 29.630 0.00 0.00 0.00 3.46
584 630 8.716909 GTTTGTTTTTCTTTGAAATGTGAAGGA 58.283 29.630 0.00 0.00 0.00 3.36
585 631 7.826260 TGTTTTTCTTTGAAATGTGAAGGAC 57.174 32.000 0.00 0.00 0.00 3.85
586 632 7.382110 TGTTTTTCTTTGAAATGTGAAGGACA 58.618 30.769 0.00 0.00 39.53 4.02
588 634 9.528018 GTTTTTCTTTGAAATGTGAAGGACATA 57.472 29.630 0.00 0.00 45.12 2.29
590 636 9.695526 TTTTCTTTGAAATGTGAAGGACATATG 57.304 29.630 0.00 0.00 45.12 1.78
591 637 6.855836 TCTTTGAAATGTGAAGGACATATGC 58.144 36.000 1.58 0.00 45.12 3.14
592 638 5.581126 TTGAAATGTGAAGGACATATGCC 57.419 39.130 1.58 5.36 45.12 4.40
593 639 4.598022 TGAAATGTGAAGGACATATGCCA 58.402 39.130 15.63 0.17 45.12 4.92
594 640 5.015515 TGAAATGTGAAGGACATATGCCAA 58.984 37.500 15.63 2.13 45.12 4.52
595 641 5.657745 TGAAATGTGAAGGACATATGCCAAT 59.342 36.000 15.63 6.58 45.12 3.16
596 642 5.779529 AATGTGAAGGACATATGCCAATC 57.220 39.130 15.63 13.36 45.12 2.67
597 643 3.554934 TGTGAAGGACATATGCCAATCC 58.445 45.455 15.63 9.69 0.00 3.01
598 644 3.202818 TGTGAAGGACATATGCCAATCCT 59.797 43.478 15.63 11.53 43.66 3.24
599 645 4.411869 TGTGAAGGACATATGCCAATCCTA 59.588 41.667 11.84 0.00 40.83 2.94
600 646 5.073554 TGTGAAGGACATATGCCAATCCTAT 59.926 40.000 11.84 4.51 40.83 2.57
601 647 6.272090 TGTGAAGGACATATGCCAATCCTATA 59.728 38.462 11.84 3.56 40.83 1.31
602 648 7.037370 TGTGAAGGACATATGCCAATCCTATAT 60.037 37.037 11.84 0.00 40.83 0.86
603 649 8.486210 GTGAAGGACATATGCCAATCCTATATA 58.514 37.037 11.84 0.00 40.83 0.86
604 650 8.708378 TGAAGGACATATGCCAATCCTATATAG 58.292 37.037 11.84 2.46 40.83 1.31
605 651 7.623999 AGGACATATGCCAATCCTATATAGG 57.376 40.000 21.21 21.21 39.89 2.57
636 682 9.338291 GAAATCCGTTTCTATAAACCAAAAGAC 57.662 33.333 0.00 0.00 41.68 3.01
637 683 8.631480 AATCCGTTTCTATAAACCAAAAGACT 57.369 30.769 0.00 0.00 41.68 3.24
638 684 8.631480 ATCCGTTTCTATAAACCAAAAGACTT 57.369 30.769 0.00 0.00 41.68 3.01
639 685 9.729281 ATCCGTTTCTATAAACCAAAAGACTTA 57.271 29.630 0.00 0.00 41.68 2.24
640 686 9.211485 TCCGTTTCTATAAACCAAAAGACTTAG 57.789 33.333 0.00 0.00 41.68 2.18
641 687 9.211485 CCGTTTCTATAAACCAAAAGACTTAGA 57.789 33.333 0.00 0.00 41.68 2.10
679 725 9.566331 AGAATCATATCCTATACAATTCCTCCA 57.434 33.333 0.00 0.00 0.00 3.86
682 728 9.965902 ATCATATCCTATACAATTCCTCCAAAC 57.034 33.333 0.00 0.00 0.00 2.93
683 729 8.383175 TCATATCCTATACAATTCCTCCAAACC 58.617 37.037 0.00 0.00 0.00 3.27
684 730 6.590656 ATCCTATACAATTCCTCCAAACCA 57.409 37.500 0.00 0.00 0.00 3.67
685 731 6.395780 TCCTATACAATTCCTCCAAACCAA 57.604 37.500 0.00 0.00 0.00 3.67
686 732 6.795590 TCCTATACAATTCCTCCAAACCAAA 58.204 36.000 0.00 0.00 0.00 3.28
687 733 6.889722 TCCTATACAATTCCTCCAAACCAAAG 59.110 38.462 0.00 0.00 0.00 2.77
688 734 6.096846 CCTATACAATTCCTCCAAACCAAAGG 59.903 42.308 0.00 0.00 0.00 3.11
689 735 3.922375 ACAATTCCTCCAAACCAAAGGA 58.078 40.909 0.00 0.00 37.42 3.36
693 739 2.658548 CTCCAAACCAAAGGAGGGC 58.341 57.895 0.00 0.00 46.11 5.19
694 740 0.900182 CTCCAAACCAAAGGAGGGCC 60.900 60.000 0.00 0.00 46.11 5.80
725 807 2.302260 TGCTTCCGAACCAATCAACAA 58.698 42.857 0.00 0.00 0.00 2.83
741 2298 0.978146 ACAAGCAGGCTAGATCCGGT 60.978 55.000 0.00 0.00 0.00 5.28
813 2455 2.756760 TCGACCCATAGTGTGAAGGTAC 59.243 50.000 0.00 0.00 0.00 3.34
863 2505 0.529378 GCCTTTCATGGGTGAAGCAG 59.471 55.000 0.00 0.00 44.62 4.24
888 2530 1.203052 CATTTGACAGGGTCATGCCAC 59.797 52.381 0.00 0.00 42.40 5.01
890 2532 1.714011 TTGACAGGGTCATGCCACCA 61.714 55.000 5.97 0.00 42.40 4.17
895 2537 1.223487 GGGTCATGCCACCACGTAT 59.777 57.895 5.97 0.00 38.32 3.06
898 2540 1.406887 GGTCATGCCACCACGTATTCT 60.407 52.381 0.00 0.00 36.32 2.40
899 2541 1.665679 GTCATGCCACCACGTATTCTG 59.334 52.381 0.00 0.00 0.00 3.02
900 2542 1.552792 TCATGCCACCACGTATTCTGA 59.447 47.619 0.00 0.00 0.00 3.27
902 2544 0.036765 TGCCACCACGTATTCTGACC 60.037 55.000 0.00 0.00 0.00 4.02
903 2545 0.249398 GCCACCACGTATTCTGACCT 59.751 55.000 0.00 0.00 0.00 3.85
904 2546 2.007049 GCCACCACGTATTCTGACCTG 61.007 57.143 0.00 0.00 0.00 4.00
905 2547 1.359848 CACCACGTATTCTGACCTGC 58.640 55.000 0.00 0.00 0.00 4.85
906 2548 1.066858 CACCACGTATTCTGACCTGCT 60.067 52.381 0.00 0.00 0.00 4.24
908 2550 2.165845 ACCACGTATTCTGACCTGCTAC 59.834 50.000 0.00 0.00 0.00 3.58
970 2628 1.081175 GCGCCTTGCCAGTTTCTTC 60.081 57.895 0.00 0.00 37.76 2.87
973 2631 1.866853 GCCTTGCCAGTTTCTTCGGG 61.867 60.000 0.00 0.00 0.00 5.14
974 2632 0.250727 CCTTGCCAGTTTCTTCGGGA 60.251 55.000 0.00 0.00 0.00 5.14
1164 2830 2.181021 GACCCGTGCGACTTCGAT 59.819 61.111 2.02 0.00 43.02 3.59
1216 2882 2.433145 ACCTGACGCTCACGCATG 60.433 61.111 0.00 0.00 45.53 4.06
1236 2902 0.239347 CTTTCTTCAAGGGCTGCACG 59.761 55.000 0.50 0.00 0.00 5.34
1245 2911 2.251642 GGGCTGCACGTTCGACTTT 61.252 57.895 0.50 0.00 0.00 2.66
1324 2990 2.925170 ACCAGGTGCTCGGCTTCT 60.925 61.111 0.00 0.00 0.00 2.85
1523 3189 1.378646 TCGATGGTCACCGAGAGCT 60.379 57.895 8.17 0.00 44.98 4.09
1527 3193 1.830587 ATGGTCACCGAGAGCTTGCA 61.831 55.000 8.17 0.00 44.98 4.08
1581 3247 1.373497 CAAACGCTCTCAGGTCGCT 60.373 57.895 0.00 0.00 0.00 4.93
1584 3250 1.806461 AACGCTCTCAGGTCGCTCAA 61.806 55.000 0.00 0.00 0.00 3.02
1597 3263 3.485431 CTCAAGTGAGCGCGCAGG 61.485 66.667 35.10 15.08 35.13 4.85
1706 3372 3.041940 GCCAACGACGTGGGACAG 61.042 66.667 25.92 0.00 41.80 3.51
1707 3373 3.041940 CCAACGACGTGGGACAGC 61.042 66.667 16.97 0.00 41.80 4.40
1818 3484 4.296265 GGTGACCCGTTGTGGATC 57.704 61.111 0.00 0.00 42.00 3.36
1830 3496 2.047655 TGGATCGACACAACGGCC 60.048 61.111 0.00 0.00 0.00 6.13
1869 3535 1.615883 AGCATCTCGATCGGCTACAAT 59.384 47.619 16.41 0.00 34.25 2.71
1909 3581 5.257864 GGGCGTACGTGTGTTAATTTTATC 58.742 41.667 17.90 0.00 0.00 1.75
1910 3582 5.257864 GGCGTACGTGTGTTAATTTTATCC 58.742 41.667 17.90 0.00 0.00 2.59
1943 3622 5.125739 TGGTTTGTATCGTTTTTCAGTGGTT 59.874 36.000 0.00 0.00 0.00 3.67
1950 3629 5.917541 TCGTTTTTCAGTGGTTGTCTATC 57.082 39.130 0.00 0.00 0.00 2.08
1951 3630 4.446385 TCGTTTTTCAGTGGTTGTCTATCG 59.554 41.667 0.00 0.00 0.00 2.92
1953 3632 5.440685 GTTTTTCAGTGGTTGTCTATCGTG 58.559 41.667 0.00 0.00 0.00 4.35
2009 3714 1.066573 AGAGGGCATCGTCTCTTGTTG 60.067 52.381 0.00 0.00 37.06 3.33
2046 3751 8.995220 ACAAAACTACACATCAATGTATACGTT 58.005 29.630 4.42 4.42 39.39 3.99
2047 3752 9.472995 CAAAACTACACATCAATGTATACGTTC 57.527 33.333 7.38 0.00 39.39 3.95
2048 3753 8.766000 AAACTACACATCAATGTATACGTTCA 57.234 30.769 7.38 0.00 39.39 3.18
2078 3805 7.698836 ATTTTCTTTTCAATGAAGAACCACG 57.301 32.000 0.00 0.00 41.42 4.94
2084 3811 5.356882 TTCAATGAAGAACCACGATTCAC 57.643 39.130 0.00 0.00 35.89 3.18
2092 3819 6.708502 TGAAGAACCACGATTCACTTTCATTA 59.291 34.615 0.00 0.00 0.00 1.90
2094 3821 6.899114 AGAACCACGATTCACTTTCATTAAC 58.101 36.000 0.00 0.00 0.00 2.01
2095 3822 6.710744 AGAACCACGATTCACTTTCATTAACT 59.289 34.615 0.00 0.00 0.00 2.24
2096 3823 6.877611 ACCACGATTCACTTTCATTAACTT 57.122 33.333 0.00 0.00 0.00 2.66
2101 4196 9.318041 CACGATTCACTTTCATTAACTTACTTG 57.682 33.333 0.00 0.00 0.00 3.16
2106 4201 6.940298 TCACTTTCATTAACTTACTTGGAGGG 59.060 38.462 0.00 0.00 0.00 4.30
2117 4212 3.650298 TTGGAGGGCAGCTGCATCC 62.650 63.158 37.10 37.10 44.17 3.51
2127 4222 2.674954 CAGCTGCATCCGAATAGAGAG 58.325 52.381 0.00 0.00 0.00 3.20
2131 4226 2.799412 CTGCATCCGAATAGAGAGTTGC 59.201 50.000 0.00 0.00 0.00 4.17
2146 4241 0.251073 GTTGCTCGGGTTTAGGGCTA 59.749 55.000 0.00 0.00 0.00 3.93
2151 4246 3.393278 TGCTCGGGTTTAGGGCTATAATT 59.607 43.478 0.00 0.00 0.00 1.40
2158 4253 4.462834 GGTTTAGGGCTATAATTGATGGGC 59.537 45.833 0.00 0.00 40.50 5.36
2183 4406 3.243068 GGTTTTGCAAGAAAAGCTCGAGA 60.243 43.478 18.75 0.00 35.46 4.04
2187 4410 1.388431 GCAAGAAAAGCTCGAGACTCG 59.612 52.381 18.75 18.91 42.10 4.18
2188 4411 1.388431 CAAGAAAAGCTCGAGACTCGC 59.612 52.381 20.11 7.11 40.21 5.03
2208 4431 1.746220 CGAGTCCCTGAAGATCGACTT 59.254 52.381 0.00 0.00 42.03 3.01
2215 4438 4.770531 TCCCTGAAGATCGACTTGTCTTTA 59.229 41.667 0.81 0.00 39.13 1.85
2216 4439 5.105716 TCCCTGAAGATCGACTTGTCTTTAG 60.106 44.000 9.98 9.98 39.13 1.85
2223 4446 2.095364 TCGACTTGTCTTTAGGCTCGAC 60.095 50.000 0.00 0.00 0.00 4.20
2226 4449 2.891580 ACTTGTCTTTAGGCTCGACTCA 59.108 45.455 11.24 0.00 0.00 3.41
2242 4465 3.981416 CGACTCAAGATCGACTCAAAACA 59.019 43.478 0.00 0.00 42.25 2.83
2249 4472 7.874940 TCAAGATCGACTCAAAACAAAATGAT 58.125 30.769 0.00 0.00 0.00 2.45
2257 4480 8.446273 CGACTCAAAACAAAATGATCTGAGTAT 58.554 33.333 8.06 0.00 41.46 2.12
2263 4486 5.423015 ACAAAATGATCTGAGTATGAGCGT 58.577 37.500 0.00 0.00 0.00 5.07
2312 4535 4.183865 CGAGTTCATCTTGAGCCAACATA 58.816 43.478 0.00 0.00 0.00 2.29
2313 4536 4.813161 CGAGTTCATCTTGAGCCAACATAT 59.187 41.667 0.00 0.00 0.00 1.78
2314 4537 5.985530 CGAGTTCATCTTGAGCCAACATATA 59.014 40.000 0.00 0.00 0.00 0.86
2315 4538 6.648310 CGAGTTCATCTTGAGCCAACATATAT 59.352 38.462 0.00 0.00 0.00 0.86
2374 4654 8.798402 TCGTGTATGGTTTTTCTCCATTTTATT 58.202 29.630 2.79 0.00 42.24 1.40
2403 4683 9.624697 CTAGCAAACATGTAAGCTTAATTGAAA 57.375 29.630 24.44 8.16 38.47 2.69
2424 4716 4.178545 AGCGGAGAAAATTTTGACCATG 57.821 40.909 8.47 1.75 0.00 3.66
2425 4717 2.667969 GCGGAGAAAATTTTGACCATGC 59.332 45.455 8.47 7.43 0.00 4.06
2442 4735 1.732941 TGCATGGTACTTTGTAGCCG 58.267 50.000 0.00 0.00 0.00 5.52
2449 4742 3.069300 TGGTACTTTGTAGCCGTGTGTTA 59.931 43.478 4.77 0.00 0.00 2.41
2455 4748 5.121768 ACTTTGTAGCCGTGTGTTAATCATC 59.878 40.000 0.00 0.00 0.00 2.92
2456 4749 3.527533 TGTAGCCGTGTGTTAATCATCC 58.472 45.455 0.00 0.00 0.00 3.51
2458 4751 2.632377 AGCCGTGTGTTAATCATCCTG 58.368 47.619 0.00 0.00 0.00 3.86
2465 4758 7.535139 CCGTGTGTTAATCATCCTGTAATTTT 58.465 34.615 0.00 0.00 0.00 1.82
2466 4759 7.696453 CCGTGTGTTAATCATCCTGTAATTTTC 59.304 37.037 0.00 0.00 0.00 2.29
2488 4781 3.206150 GGTCAAAGTTTGAGAGCAGACA 58.794 45.455 18.56 0.00 41.01 3.41
2490 4783 3.623060 GTCAAAGTTTGAGAGCAGACACA 59.377 43.478 18.56 0.00 41.01 3.72
2500 4793 4.883585 TGAGAGCAGACACAACTTCAATTT 59.116 37.500 0.00 0.00 0.00 1.82
2501 4794 5.008019 TGAGAGCAGACACAACTTCAATTTC 59.992 40.000 0.00 0.00 0.00 2.17
2504 4797 6.096001 AGAGCAGACACAACTTCAATTTCTTT 59.904 34.615 0.00 0.00 0.00 2.52
2505 4798 6.038356 AGCAGACACAACTTCAATTTCTTTG 58.962 36.000 0.00 0.00 36.61 2.77
2506 4799 5.276536 GCAGACACAACTTCAATTTCTTTGC 60.277 40.000 0.00 0.00 35.16 3.68
2507 4800 5.806502 CAGACACAACTTCAATTTCTTTGCA 59.193 36.000 0.00 0.00 35.16 4.08
2508 4801 6.477688 CAGACACAACTTCAATTTCTTTGCAT 59.522 34.615 0.00 0.00 35.16 3.96
2509 4802 6.477688 AGACACAACTTCAATTTCTTTGCATG 59.522 34.615 0.00 0.00 35.16 4.06
2510 4803 5.006941 ACACAACTTCAATTTCTTTGCATGC 59.993 36.000 11.82 11.82 35.16 4.06
2514 4809 6.336842 ACTTCAATTTCTTTGCATGCTAGT 57.663 33.333 20.33 0.00 35.16 2.57
2526 4821 1.723542 CATGCTAGTTCATCCGCGATC 59.276 52.381 8.23 0.00 0.00 3.69
2542 4837 6.631016 TCCGCGATCTCTTGCTATTAAATAT 58.369 36.000 8.23 0.00 0.00 1.28
2543 4838 6.531594 TCCGCGATCTCTTGCTATTAAATATG 59.468 38.462 8.23 0.00 0.00 1.78
2544 4839 6.311445 CCGCGATCTCTTGCTATTAAATATGT 59.689 38.462 8.23 0.00 0.00 2.29
2545 4840 7.488150 CCGCGATCTCTTGCTATTAAATATGTA 59.512 37.037 8.23 0.00 0.00 2.29
2546 4841 9.025020 CGCGATCTCTTGCTATTAAATATGTAT 57.975 33.333 0.00 0.00 0.00 2.29
2566 4861 8.815565 ATGTATTAGTCTTCTGTTGAGAGAGA 57.184 34.615 0.00 0.00 0.00 3.10
2567 4862 8.637196 TGTATTAGTCTTCTGTTGAGAGAGAA 57.363 34.615 0.00 0.00 34.38 2.87
2568 4863 9.249053 TGTATTAGTCTTCTGTTGAGAGAGAAT 57.751 33.333 0.00 0.00 34.97 2.40
2572 4867 9.521841 TTAGTCTTCTGTTGAGAGAGAATAAGA 57.478 33.333 0.00 0.00 34.97 2.10
2573 4868 8.593945 AGTCTTCTGTTGAGAGAGAATAAGAT 57.406 34.615 0.00 0.00 34.97 2.40
2574 4869 8.686334 AGTCTTCTGTTGAGAGAGAATAAGATC 58.314 37.037 0.00 0.00 34.97 2.75
2575 4870 8.465999 GTCTTCTGTTGAGAGAGAATAAGATCA 58.534 37.037 0.00 0.00 34.97 2.92
2576 4871 9.029368 TCTTCTGTTGAGAGAGAATAAGATCAA 57.971 33.333 0.00 0.00 34.97 2.57
2577 4872 9.820725 CTTCTGTTGAGAGAGAATAAGATCAAT 57.179 33.333 0.00 0.00 34.97 2.57
2581 4876 9.948964 TGTTGAGAGAGAATAAGATCAATTTCA 57.051 29.630 0.00 0.00 0.00 2.69
2584 4879 9.388506 TGAGAGAGAATAAGATCAATTTCAACC 57.611 33.333 0.00 0.00 0.00 3.77
2585 4880 9.388506 GAGAGAGAATAAGATCAATTTCAACCA 57.611 33.333 0.00 0.00 0.00 3.67
2586 4881 9.171877 AGAGAGAATAAGATCAATTTCAACCAC 57.828 33.333 0.00 0.00 0.00 4.16
2587 4882 9.171877 GAGAGAATAAGATCAATTTCAACCACT 57.828 33.333 0.00 0.00 0.00 4.00
2588 4883 9.171877 AGAGAATAAGATCAATTTCAACCACTC 57.828 33.333 0.00 0.00 0.00 3.51
2589 4884 8.868522 AGAATAAGATCAATTTCAACCACTCA 57.131 30.769 0.00 0.00 0.00 3.41
2590 4885 8.734386 AGAATAAGATCAATTTCAACCACTCAC 58.266 33.333 0.00 0.00 0.00 3.51
2591 4886 8.641498 AATAAGATCAATTTCAACCACTCACT 57.359 30.769 0.00 0.00 0.00 3.41
2592 4887 6.966534 AAGATCAATTTCAACCACTCACTT 57.033 33.333 0.00 0.00 0.00 3.16
2593 4888 6.323203 AGATCAATTTCAACCACTCACTTG 57.677 37.500 0.00 0.00 0.00 3.16
2594 4889 6.064060 AGATCAATTTCAACCACTCACTTGA 58.936 36.000 0.00 0.00 0.00 3.02
2595 4890 6.718454 AGATCAATTTCAACCACTCACTTGAT 59.282 34.615 0.00 0.00 35.44 2.57
2596 4891 6.713762 TCAATTTCAACCACTCACTTGATT 57.286 33.333 0.00 0.00 0.00 2.57
2597 4892 7.111247 TCAATTTCAACCACTCACTTGATTT 57.889 32.000 0.00 0.00 0.00 2.17
2598 4893 7.555087 TCAATTTCAACCACTCACTTGATTTT 58.445 30.769 0.00 0.00 0.00 1.82
2599 4894 8.040132 TCAATTTCAACCACTCACTTGATTTTT 58.960 29.630 0.00 0.00 0.00 1.94
2620 4915 5.379732 TTTTCATAAAGCTGGTTTACGGG 57.620 39.130 13.62 7.46 33.30 5.28
2621 4916 3.985019 TCATAAAGCTGGTTTACGGGA 57.015 42.857 13.62 9.38 33.30 5.14
2622 4917 4.497291 TCATAAAGCTGGTTTACGGGAT 57.503 40.909 13.62 0.00 33.30 3.85
2623 4918 4.196193 TCATAAAGCTGGTTTACGGGATG 58.804 43.478 13.62 9.33 33.30 3.51
2624 4919 2.871096 AAAGCTGGTTTACGGGATGA 57.129 45.000 2.51 0.00 0.00 2.92
2625 4920 2.109425 AAGCTGGTTTACGGGATGAC 57.891 50.000 0.00 0.00 0.00 3.06
2626 4921 0.252197 AGCTGGTTTACGGGATGACC 59.748 55.000 0.00 0.00 0.00 4.02
2627 4922 0.035820 GCTGGTTTACGGGATGACCA 60.036 55.000 0.00 0.00 39.72 4.02
2628 4923 1.408266 GCTGGTTTACGGGATGACCAT 60.408 52.381 0.00 0.00 41.04 3.55
2629 4924 2.561569 CTGGTTTACGGGATGACCATC 58.438 52.381 1.50 1.50 41.04 3.51
2630 4925 1.909986 TGGTTTACGGGATGACCATCA 59.090 47.619 11.59 0.00 39.54 3.07
2631 4926 2.306219 TGGTTTACGGGATGACCATCAA 59.694 45.455 11.59 0.00 39.54 2.57
2632 4927 3.244946 TGGTTTACGGGATGACCATCAAA 60.245 43.478 11.59 1.77 39.54 2.69
2633 4928 3.951680 GGTTTACGGGATGACCATCAAAT 59.048 43.478 11.59 0.00 39.54 2.32
2634 4929 4.401202 GGTTTACGGGATGACCATCAAATT 59.599 41.667 11.59 0.00 39.54 1.82
2635 4930 5.449999 GGTTTACGGGATGACCATCAAATTC 60.450 44.000 11.59 0.00 39.54 2.17
2636 4931 3.364460 ACGGGATGACCATCAAATTCA 57.636 42.857 11.59 0.00 39.54 2.57
2637 4932 3.282021 ACGGGATGACCATCAAATTCAG 58.718 45.455 11.59 0.00 39.54 3.02
2638 4933 2.620115 CGGGATGACCATCAAATTCAGG 59.380 50.000 11.59 0.00 39.54 3.86
2639 4934 2.961062 GGGATGACCATCAAATTCAGGG 59.039 50.000 11.59 0.00 39.54 4.45
2640 4935 2.961062 GGATGACCATCAAATTCAGGGG 59.039 50.000 11.59 0.00 39.54 4.79
2641 4936 3.373001 GGATGACCATCAAATTCAGGGGA 60.373 47.826 11.59 0.00 39.54 4.81
2642 4937 3.824001 TGACCATCAAATTCAGGGGAA 57.176 42.857 0.00 0.00 37.45 3.97
2643 4938 3.700538 TGACCATCAAATTCAGGGGAAG 58.299 45.455 0.00 0.00 36.25 3.46
2644 4939 3.075882 TGACCATCAAATTCAGGGGAAGT 59.924 43.478 0.00 0.00 36.25 3.01
2645 4940 4.089361 GACCATCAAATTCAGGGGAAGTT 58.911 43.478 0.00 0.00 41.60 2.66
2651 4946 4.453480 AAATTCAGGGGAAGTTGTCTGA 57.547 40.909 0.00 0.00 39.61 3.27
2652 4947 3.710209 ATTCAGGGGAAGTTGTCTGAG 57.290 47.619 0.00 0.00 37.52 3.35
2653 4948 2.398754 TCAGGGGAAGTTGTCTGAGA 57.601 50.000 0.00 0.00 33.07 3.27
2654 4949 2.251818 TCAGGGGAAGTTGTCTGAGAG 58.748 52.381 0.00 0.00 33.07 3.20
2655 4950 0.980423 AGGGGAAGTTGTCTGAGAGC 59.020 55.000 0.00 0.00 0.00 4.09
2656 4951 0.687354 GGGGAAGTTGTCTGAGAGCA 59.313 55.000 0.00 0.00 0.00 4.26
2657 4952 1.072331 GGGGAAGTTGTCTGAGAGCAA 59.928 52.381 0.00 0.00 0.00 3.91
2658 4953 2.147150 GGGAAGTTGTCTGAGAGCAAC 58.853 52.381 15.39 15.39 43.63 4.17
2664 4959 4.622701 GTTGTCTGAGAGCAACTTTTGT 57.377 40.909 15.70 0.00 41.05 2.83
2665 4960 5.734855 GTTGTCTGAGAGCAACTTTTGTA 57.265 39.130 15.70 0.00 41.05 2.41
2666 4961 6.119144 GTTGTCTGAGAGCAACTTTTGTAA 57.881 37.500 15.70 0.00 41.05 2.41
2667 4962 5.991328 TGTCTGAGAGCAACTTTTGTAAG 57.009 39.130 0.00 0.00 37.40 2.34
2668 4963 5.428253 TGTCTGAGAGCAACTTTTGTAAGT 58.572 37.500 0.00 0.00 46.44 2.24
2739 5034 8.917414 ATATAGATAATTTCCTAGGACCTGCA 57.083 34.615 12.22 0.00 0.00 4.41
2740 5035 5.975988 AGATAATTTCCTAGGACCTGCAA 57.024 39.130 12.22 2.70 0.00 4.08
2741 5036 5.934781 AGATAATTTCCTAGGACCTGCAAG 58.065 41.667 12.22 0.00 0.00 4.01
2742 5037 5.430089 AGATAATTTCCTAGGACCTGCAAGT 59.570 40.000 12.22 4.58 0.00 3.16
2743 5038 3.636153 ATTTCCTAGGACCTGCAAGTC 57.364 47.619 12.22 6.93 35.95 3.01
2744 5039 0.895530 TTCCTAGGACCTGCAAGTCG 59.104 55.000 12.22 0.00 37.66 4.18
2745 5040 0.970937 TCCTAGGACCTGCAAGTCGG 60.971 60.000 7.62 5.57 37.66 4.79
2746 5041 1.258445 CCTAGGACCTGCAAGTCGGT 61.258 60.000 1.05 1.90 37.66 4.69
2747 5042 0.108615 CTAGGACCTGCAAGTCGGTG 60.109 60.000 9.31 0.00 37.66 4.94
2748 5043 0.541063 TAGGACCTGCAAGTCGGTGA 60.541 55.000 9.31 0.00 37.66 4.02
2749 5044 1.668151 GGACCTGCAAGTCGGTGAC 60.668 63.158 9.31 0.00 37.66 3.67
2750 5045 1.069090 GACCTGCAAGTCGGTGACA 59.931 57.895 0.00 0.00 34.60 3.58
2751 5046 1.222115 GACCTGCAAGTCGGTGACAC 61.222 60.000 0.00 0.00 34.60 3.67
2752 5047 2.310233 CCTGCAAGTCGGTGACACG 61.310 63.158 0.00 0.00 34.60 4.49
2753 5048 1.591594 CTGCAAGTCGGTGACACGT 60.592 57.895 0.00 0.00 34.60 4.49
2754 5049 1.821241 CTGCAAGTCGGTGACACGTG 61.821 60.000 15.48 15.48 34.60 4.49
2755 5050 1.590525 GCAAGTCGGTGACACGTGA 60.591 57.895 25.01 0.00 34.60 4.35
2756 5051 0.944311 GCAAGTCGGTGACACGTGAT 60.944 55.000 25.01 6.44 34.60 3.06
2757 5052 0.784178 CAAGTCGGTGACACGTGATG 59.216 55.000 25.01 6.73 34.60 3.07
2758 5053 0.319555 AAGTCGGTGACACGTGATGG 60.320 55.000 25.01 6.54 34.60 3.51
2759 5054 1.006571 GTCGGTGACACGTGATGGT 60.007 57.895 25.01 0.00 34.94 3.55
2760 5055 1.006688 TCGGTGACACGTGATGGTG 60.007 57.895 25.01 8.97 43.54 4.17
2761 5056 2.027073 CGGTGACACGTGATGGTGG 61.027 63.158 25.01 2.67 42.23 4.61
2762 5057 1.671054 GGTGACACGTGATGGTGGG 60.671 63.158 25.01 0.00 42.23 4.61
2763 5058 2.031919 TGACACGTGATGGTGGGC 59.968 61.111 25.01 0.00 42.23 5.36
2764 5059 3.118454 GACACGTGATGGTGGGCG 61.118 66.667 25.01 0.00 42.23 6.13
2765 5060 4.697756 ACACGTGATGGTGGGCGG 62.698 66.667 25.01 0.00 42.23 6.13
2766 5061 4.697756 CACGTGATGGTGGGCGGT 62.698 66.667 10.90 0.00 34.27 5.68
2767 5062 4.697756 ACGTGATGGTGGGCGGTG 62.698 66.667 0.00 0.00 0.00 4.94
2771 5066 4.856801 GATGGTGGGCGGTGCGAT 62.857 66.667 0.00 0.00 0.00 4.58
2781 5076 4.760047 GGTGCGATGGCCGACAGT 62.760 66.667 0.00 0.00 41.76 3.55
2782 5077 3.490759 GTGCGATGGCCGACAGTG 61.491 66.667 0.00 0.00 41.76 3.66
2783 5078 4.002506 TGCGATGGCCGACAGTGT 62.003 61.111 0.00 0.00 41.76 3.55
2784 5079 3.490759 GCGATGGCCGACAGTGTG 61.491 66.667 0.00 0.00 41.76 3.82
2785 5080 2.261361 CGATGGCCGACAGTGTGA 59.739 61.111 0.00 0.00 41.76 3.58
2786 5081 1.807165 CGATGGCCGACAGTGTGAG 60.807 63.158 0.00 0.00 41.76 3.51
2787 5082 1.591703 GATGGCCGACAGTGTGAGA 59.408 57.895 0.00 0.00 0.00 3.27
2788 5083 0.737715 GATGGCCGACAGTGTGAGAC 60.738 60.000 0.00 0.00 0.00 3.36
2789 5084 2.430921 GGCCGACAGTGTGAGACG 60.431 66.667 0.00 0.00 0.00 4.18
2790 5085 2.430921 GCCGACAGTGTGAGACGG 60.431 66.667 14.95 14.95 45.26 4.79
2791 5086 3.039988 CCGACAGTGTGAGACGGT 58.960 61.111 11.86 0.00 38.97 4.83
2792 5087 1.371758 CCGACAGTGTGAGACGGTG 60.372 63.158 11.86 0.00 38.97 4.94
2793 5088 1.359117 CGACAGTGTGAGACGGTGT 59.641 57.895 0.00 0.00 32.52 4.16
2794 5089 0.934901 CGACAGTGTGAGACGGTGTG 60.935 60.000 0.00 0.00 32.52 3.82
2795 5090 0.597637 GACAGTGTGAGACGGTGTGG 60.598 60.000 0.00 0.00 32.52 4.17
2796 5091 1.956170 CAGTGTGAGACGGTGTGGC 60.956 63.158 0.00 0.00 0.00 5.01
2797 5092 2.108157 GTGTGAGACGGTGTGGCA 59.892 61.111 0.00 0.00 0.00 4.92
2798 5093 1.956170 GTGTGAGACGGTGTGGCAG 60.956 63.158 0.00 0.00 0.00 4.85
2799 5094 3.044305 GTGAGACGGTGTGGCAGC 61.044 66.667 0.00 0.00 0.00 5.25
2800 5095 3.233980 TGAGACGGTGTGGCAGCT 61.234 61.111 0.00 0.00 0.00 4.24
2801 5096 2.740055 GAGACGGTGTGGCAGCTG 60.740 66.667 10.11 10.11 0.00 4.24
2802 5097 4.996434 AGACGGTGTGGCAGCTGC 62.996 66.667 30.88 30.88 41.14 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 84 5.729883 CGTTTCTTCATCATTCACGACATTC 59.270 40.000 0.00 0.00 0.00 2.67
208 210 8.017373 CGGATATATATGTGCTTGGTCTTTTTG 58.983 37.037 0.00 0.00 0.00 2.44
278 280 3.230134 TGTTGATTTTGGAAGGGTCCTG 58.770 45.455 0.00 0.00 45.22 3.86
279 281 3.611025 TGTTGATTTTGGAAGGGTCCT 57.389 42.857 0.00 0.00 45.22 3.85
304 306 6.299604 CAAGTTAATTTCGTCTGTAGCTGTG 58.700 40.000 0.00 0.00 0.00 3.66
316 318 5.088739 GTGTCATCCTGCAAGTTAATTTCG 58.911 41.667 0.00 0.00 0.00 3.46
346 357 7.365295 CCTTTTTCCCATCATTTCCAATCAGAT 60.365 37.037 0.00 0.00 0.00 2.90
348 359 6.070653 TCCTTTTTCCCATCATTTCCAATCAG 60.071 38.462 0.00 0.00 0.00 2.90
367 378 4.003648 CTCTTCACCGCACTAATCCTTTT 58.996 43.478 0.00 0.00 0.00 2.27
370 381 2.093973 CACTCTTCACCGCACTAATCCT 60.094 50.000 0.00 0.00 0.00 3.24
372 383 3.232213 TCACTCTTCACCGCACTAATC 57.768 47.619 0.00 0.00 0.00 1.75
373 384 3.430929 GGATCACTCTTCACCGCACTAAT 60.431 47.826 0.00 0.00 0.00 1.73
374 385 2.094182 GGATCACTCTTCACCGCACTAA 60.094 50.000 0.00 0.00 0.00 2.24
375 386 1.476891 GGATCACTCTTCACCGCACTA 59.523 52.381 0.00 0.00 0.00 2.74
376 387 0.247736 GGATCACTCTTCACCGCACT 59.752 55.000 0.00 0.00 0.00 4.40
377 388 1.078759 CGGATCACTCTTCACCGCAC 61.079 60.000 0.00 0.00 37.32 5.34
385 431 4.141914 GGATGAAACCTACGGATCACTCTT 60.142 45.833 0.00 0.00 0.00 2.85
418 464 3.753294 TCTTATGAATCGAAGGAGGCC 57.247 47.619 0.00 0.00 0.00 5.19
419 465 5.186021 TCCTATCTTATGAATCGAAGGAGGC 59.814 44.000 0.00 0.00 31.41 4.70
420 466 6.842437 TCCTATCTTATGAATCGAAGGAGG 57.158 41.667 0.00 8.78 32.05 4.30
544 590 5.948992 AAAACAAACATGAGCCTAGACTC 57.051 39.130 0.00 0.00 37.19 3.36
545 591 6.064717 AGAAAAACAAACATGAGCCTAGACT 58.935 36.000 0.00 0.00 0.00 3.24
546 592 6.319141 AGAAAAACAAACATGAGCCTAGAC 57.681 37.500 0.00 0.00 0.00 2.59
547 593 6.959639 AAGAAAAACAAACATGAGCCTAGA 57.040 33.333 0.00 0.00 0.00 2.43
548 594 7.202526 TCAAAGAAAAACAAACATGAGCCTAG 58.797 34.615 0.00 0.00 0.00 3.02
549 595 7.106439 TCAAAGAAAAACAAACATGAGCCTA 57.894 32.000 0.00 0.00 0.00 3.93
550 596 5.976458 TCAAAGAAAAACAAACATGAGCCT 58.024 33.333 0.00 0.00 0.00 4.58
551 597 6.660887 TTCAAAGAAAAACAAACATGAGCC 57.339 33.333 0.00 0.00 0.00 4.70
552 598 8.177013 ACATTTCAAAGAAAAACAAACATGAGC 58.823 29.630 0.00 0.00 0.00 4.26
553 599 9.480538 CACATTTCAAAGAAAAACAAACATGAG 57.519 29.630 0.00 0.00 0.00 2.90
554 600 9.212641 TCACATTTCAAAGAAAAACAAACATGA 57.787 25.926 0.00 0.00 0.00 3.07
555 601 9.823098 TTCACATTTCAAAGAAAAACAAACATG 57.177 25.926 0.00 0.00 0.00 3.21
557 603 8.502387 CCTTCACATTTCAAAGAAAAACAAACA 58.498 29.630 0.00 0.00 0.00 2.83
558 604 8.716909 TCCTTCACATTTCAAAGAAAAACAAAC 58.283 29.630 0.00 0.00 0.00 2.93
559 605 8.716909 GTCCTTCACATTTCAAAGAAAAACAAA 58.283 29.630 0.00 0.00 0.00 2.83
560 606 7.875041 TGTCCTTCACATTTCAAAGAAAAACAA 59.125 29.630 0.00 0.00 0.00 2.83
561 607 7.382110 TGTCCTTCACATTTCAAAGAAAAACA 58.618 30.769 0.00 0.00 0.00 2.83
562 608 7.826260 TGTCCTTCACATTTCAAAGAAAAAC 57.174 32.000 0.00 0.00 0.00 2.43
564 610 9.695526 CATATGTCCTTCACATTTCAAAGAAAA 57.304 29.630 0.00 0.00 43.89 2.29
565 611 7.814107 GCATATGTCCTTCACATTTCAAAGAAA 59.186 33.333 4.29 0.00 43.89 2.52
566 612 7.315142 GCATATGTCCTTCACATTTCAAAGAA 58.685 34.615 4.29 0.00 43.89 2.52
567 613 6.127647 GGCATATGTCCTTCACATTTCAAAGA 60.128 38.462 4.29 0.00 43.89 2.52
568 614 6.038356 GGCATATGTCCTTCACATTTCAAAG 58.962 40.000 4.29 0.00 43.89 2.77
569 615 5.479724 TGGCATATGTCCTTCACATTTCAAA 59.520 36.000 4.54 0.00 43.89 2.69
570 616 5.015515 TGGCATATGTCCTTCACATTTCAA 58.984 37.500 4.54 0.00 43.89 2.69
571 617 4.598022 TGGCATATGTCCTTCACATTTCA 58.402 39.130 4.54 0.00 43.89 2.69
572 618 5.581126 TTGGCATATGTCCTTCACATTTC 57.419 39.130 4.54 0.00 43.89 2.17
573 619 5.069516 GGATTGGCATATGTCCTTCACATTT 59.930 40.000 4.54 0.00 43.89 2.32
574 620 4.586001 GGATTGGCATATGTCCTTCACATT 59.414 41.667 4.54 0.00 43.89 2.71
576 622 3.202818 AGGATTGGCATATGTCCTTCACA 59.797 43.478 4.54 0.00 37.84 3.58
577 623 3.825328 AGGATTGGCATATGTCCTTCAC 58.175 45.455 4.54 0.51 37.84 3.18
578 624 5.848286 ATAGGATTGGCATATGTCCTTCA 57.152 39.130 15.61 2.44 41.22 3.02
579 625 8.153550 CCTATATAGGATTGGCATATGTCCTTC 58.846 40.741 22.53 7.74 46.63 3.46
580 626 8.038862 CCTATATAGGATTGGCATATGTCCTT 57.961 38.462 22.53 8.23 46.63 3.36
581 627 7.623999 CCTATATAGGATTGGCATATGTCCT 57.376 40.000 22.53 14.96 46.63 3.85
610 656 9.338291 GTCTTTTGGTTTATAGAAACGGATTTC 57.662 33.333 6.87 0.00 45.06 2.17
611 657 9.074576 AGTCTTTTGGTTTATAGAAACGGATTT 57.925 29.630 6.87 0.00 45.06 2.17
612 658 8.631480 AGTCTTTTGGTTTATAGAAACGGATT 57.369 30.769 6.87 0.00 45.06 3.01
613 659 8.631480 AAGTCTTTTGGTTTATAGAAACGGAT 57.369 30.769 6.87 0.00 45.06 4.18
614 660 9.211485 CTAAGTCTTTTGGTTTATAGAAACGGA 57.789 33.333 6.87 0.00 45.06 4.69
615 661 9.211485 TCTAAGTCTTTTGGTTTATAGAAACGG 57.789 33.333 6.87 0.00 45.06 4.44
653 699 9.566331 TGGAGGAATTGTATAGGATATGATTCT 57.434 33.333 0.00 0.00 0.00 2.40
656 702 9.965902 GTTTGGAGGAATTGTATAGGATATGAT 57.034 33.333 0.00 0.00 0.00 2.45
657 703 8.383175 GGTTTGGAGGAATTGTATAGGATATGA 58.617 37.037 0.00 0.00 0.00 2.15
658 704 8.163408 TGGTTTGGAGGAATTGTATAGGATATG 58.837 37.037 0.00 0.00 0.00 1.78
659 705 8.287904 TGGTTTGGAGGAATTGTATAGGATAT 57.712 34.615 0.00 0.00 0.00 1.63
660 706 7.699709 TGGTTTGGAGGAATTGTATAGGATA 57.300 36.000 0.00 0.00 0.00 2.59
661 707 6.590656 TGGTTTGGAGGAATTGTATAGGAT 57.409 37.500 0.00 0.00 0.00 3.24
662 708 6.395780 TTGGTTTGGAGGAATTGTATAGGA 57.604 37.500 0.00 0.00 0.00 2.94
663 709 6.096846 CCTTTGGTTTGGAGGAATTGTATAGG 59.903 42.308 0.00 0.00 32.11 2.57
664 710 6.889722 TCCTTTGGTTTGGAGGAATTGTATAG 59.110 38.462 0.00 0.00 36.67 1.31
665 711 6.795590 TCCTTTGGTTTGGAGGAATTGTATA 58.204 36.000 0.00 0.00 36.67 1.47
666 712 5.650283 TCCTTTGGTTTGGAGGAATTGTAT 58.350 37.500 0.00 0.00 36.67 2.29
667 713 5.068215 TCCTTTGGTTTGGAGGAATTGTA 57.932 39.130 0.00 0.00 36.67 2.41
668 714 3.897505 CTCCTTTGGTTTGGAGGAATTGT 59.102 43.478 0.00 0.00 44.44 2.71
669 715 4.525912 CTCCTTTGGTTTGGAGGAATTG 57.474 45.455 0.00 0.00 44.44 2.32
675 721 0.900182 GGCCCTCCTTTGGTTTGGAG 60.900 60.000 0.00 0.00 46.91 3.86
676 722 1.155155 GGCCCTCCTTTGGTTTGGA 59.845 57.895 0.00 0.00 0.00 3.53
677 723 1.156095 AGGCCCTCCTTTGGTTTGG 59.844 57.895 0.00 0.00 40.66 3.28
678 724 4.952482 AGGCCCTCCTTTGGTTTG 57.048 55.556 0.00 0.00 40.66 2.93
687 733 1.685148 CAAGAATGCTAAGGCCCTCC 58.315 55.000 0.00 0.00 37.74 4.30
725 807 1.789523 TTTACCGGATCTAGCCTGCT 58.210 50.000 9.46 0.00 0.00 4.24
741 2298 8.076178 GTCTTAAGACTTTTCTGCTTGCATTTA 58.924 33.333 25.30 0.00 41.65 1.40
796 2398 8.047310 AGAAATAAAGTACCTTCACACTATGGG 58.953 37.037 0.00 0.00 0.00 4.00
797 2399 8.883731 CAGAAATAAAGTACCTTCACACTATGG 58.116 37.037 0.00 0.00 0.00 2.74
798 2400 9.653287 TCAGAAATAAAGTACCTTCACACTATG 57.347 33.333 0.00 0.00 0.00 2.23
799 2401 9.877178 CTCAGAAATAAAGTACCTTCACACTAT 57.123 33.333 0.00 0.00 0.00 2.12
800 2402 8.311836 CCTCAGAAATAAAGTACCTTCACACTA 58.688 37.037 0.00 0.00 0.00 2.74
813 2455 3.343617 TGCCGGTTCCTCAGAAATAAAG 58.656 45.455 1.90 0.00 32.58 1.85
821 2463 1.743252 GCTTCTGCCGGTTCCTCAG 60.743 63.158 1.90 0.73 0.00 3.35
863 2505 3.119708 GCATGACCCTGTCAAATGTCTTC 60.120 47.826 0.00 0.00 45.96 2.87
888 2530 2.427453 AGTAGCAGGTCAGAATACGTGG 59.573 50.000 0.00 0.00 36.12 4.94
890 2532 3.622630 AGAGTAGCAGGTCAGAATACGT 58.377 45.455 0.00 0.00 0.00 3.57
895 2537 6.436218 TGTATTTGTAGAGTAGCAGGTCAGAA 59.564 38.462 0.00 0.00 0.00 3.02
898 2540 6.154534 ACATGTATTTGTAGAGTAGCAGGTCA 59.845 38.462 0.00 0.00 0.00 4.02
899 2541 6.574350 ACATGTATTTGTAGAGTAGCAGGTC 58.426 40.000 0.00 0.00 0.00 3.85
900 2542 6.546428 ACATGTATTTGTAGAGTAGCAGGT 57.454 37.500 0.00 0.00 0.00 4.00
902 2544 6.818644 ACCAACATGTATTTGTAGAGTAGCAG 59.181 38.462 0.00 0.00 0.00 4.24
903 2545 6.707290 ACCAACATGTATTTGTAGAGTAGCA 58.293 36.000 0.00 0.00 0.00 3.49
904 2546 7.042335 AGACCAACATGTATTTGTAGAGTAGC 58.958 38.462 0.00 0.00 0.00 3.58
905 2547 8.470805 AGAGACCAACATGTATTTGTAGAGTAG 58.529 37.037 0.00 0.00 0.00 2.57
906 2548 8.362464 AGAGACCAACATGTATTTGTAGAGTA 57.638 34.615 0.00 0.00 0.00 2.59
908 2550 7.604164 ACAAGAGACCAACATGTATTTGTAGAG 59.396 37.037 0.00 0.00 0.00 2.43
970 2628 1.528309 GAGCTCCCTCTCTCTCCCG 60.528 68.421 0.87 0.00 35.16 5.14
973 2631 1.756538 CTTTGGAGCTCCCTCTCTCTC 59.243 57.143 29.95 1.88 38.21 3.20
974 2632 1.360852 TCTTTGGAGCTCCCTCTCTCT 59.639 52.381 29.95 0.00 38.21 3.10
1026 2692 2.052468 GAGGGGTGGGTTATCCGTAAT 58.948 52.381 0.00 0.00 38.76 1.89
1164 2830 1.371758 GACGCAGCAGACGTGAAGA 60.372 57.895 0.00 0.00 45.24 2.87
1216 2882 0.038801 GTGCAGCCCTTGAAGAAAGC 60.039 55.000 0.00 0.00 34.24 3.51
1236 2902 0.714439 GGCTGTAGCGAAAGTCGAAC 59.286 55.000 1.05 0.00 43.74 3.95
1324 2990 2.589442 GTGGCCGTCGTGGAACAA 60.589 61.111 0.00 0.00 44.16 2.83
1698 3364 2.668550 GACAACCCGCTGTCCCAC 60.669 66.667 0.00 0.00 39.93 4.61
1706 3372 1.718757 GATGCTGGATGACAACCCGC 61.719 60.000 10.66 10.66 37.96 6.13
1707 3373 0.392863 TGATGCTGGATGACAACCCG 60.393 55.000 0.00 0.00 0.00 5.28
1847 3513 1.409064 TGTAGCCGATCGAGATGCTTT 59.591 47.619 18.66 0.00 35.34 3.51
1869 3535 3.181473 ACGCCCGCTTGTAGTAATTGATA 60.181 43.478 0.00 0.00 0.00 2.15
1943 3622 9.647797 AATAGACAAACAAATACACGATAGACA 57.352 29.630 0.00 0.00 41.38 3.41
1950 3629 7.853437 TCACACAAATAGACAAACAAATACACG 59.147 33.333 0.00 0.00 0.00 4.49
1951 3630 9.677567 ATCACACAAATAGACAAACAAATACAC 57.322 29.630 0.00 0.00 0.00 2.90
1979 3684 7.984475 AGAGACGATGCCCTCTATATCTATAT 58.016 38.462 0.00 0.00 37.94 0.86
1980 3685 7.381789 AGAGACGATGCCCTCTATATCTATA 57.618 40.000 0.00 0.00 37.94 1.31
1981 3686 6.260700 AGAGACGATGCCCTCTATATCTAT 57.739 41.667 0.00 0.00 37.94 1.98
1982 3687 5.702065 AGAGACGATGCCCTCTATATCTA 57.298 43.478 0.00 0.00 37.94 1.98
1983 3688 4.584638 AGAGACGATGCCCTCTATATCT 57.415 45.455 0.00 0.00 37.94 1.98
1984 3689 4.461081 ACAAGAGACGATGCCCTCTATATC 59.539 45.833 0.00 0.00 38.70 1.63
1988 3693 2.145397 ACAAGAGACGATGCCCTCTA 57.855 50.000 0.00 0.00 38.70 2.43
2052 3757 9.410556 CGTGGTTCTTCATTGAAAAGAAAATAT 57.589 29.630 0.01 0.00 42.63 1.28
2062 3789 5.063204 AGTGAATCGTGGTTCTTCATTGAA 58.937 37.500 0.00 0.00 32.05 2.69
2064 3791 5.362556 AAGTGAATCGTGGTTCTTCATTG 57.637 39.130 0.00 0.00 32.05 2.82
2073 3800 6.877611 AAGTTAATGAAAGTGAATCGTGGT 57.122 33.333 0.00 0.00 0.00 4.16
2084 3811 5.710099 TGCCCTCCAAGTAAGTTAATGAAAG 59.290 40.000 0.00 0.00 0.00 2.62
2092 3819 1.068121 AGCTGCCCTCCAAGTAAGTT 58.932 50.000 0.00 0.00 0.00 2.66
2094 3821 1.028868 GCAGCTGCCCTCCAAGTAAG 61.029 60.000 28.76 0.00 34.31 2.34
2095 3822 1.002134 GCAGCTGCCCTCCAAGTAA 60.002 57.895 28.76 0.00 34.31 2.24
2096 3823 1.565390 ATGCAGCTGCCCTCCAAGTA 61.565 55.000 34.64 14.14 41.18 2.24
2106 4201 1.146637 CTCTATTCGGATGCAGCTGC 58.853 55.000 31.89 31.89 42.50 5.25
2117 4212 1.405821 ACCCGAGCAACTCTCTATTCG 59.594 52.381 0.00 0.00 39.70 3.34
2127 4222 0.251073 TAGCCCTAAACCCGAGCAAC 59.749 55.000 0.00 0.00 0.00 4.17
2131 4226 5.223449 TCAATTATAGCCCTAAACCCGAG 57.777 43.478 0.00 0.00 0.00 4.63
2134 4229 5.016831 CCCATCAATTATAGCCCTAAACCC 58.983 45.833 0.00 0.00 0.00 4.11
2135 4230 4.462834 GCCCATCAATTATAGCCCTAAACC 59.537 45.833 0.00 0.00 0.00 3.27
2136 4231 5.325239 AGCCCATCAATTATAGCCCTAAAC 58.675 41.667 0.00 0.00 0.00 2.01
2140 4235 3.525199 CCTAGCCCATCAATTATAGCCCT 59.475 47.826 0.00 0.00 0.00 5.19
2146 4241 4.961730 TGCAAAACCTAGCCCATCAATTAT 59.038 37.500 0.00 0.00 0.00 1.28
2151 4246 2.170166 CTTGCAAAACCTAGCCCATCA 58.830 47.619 0.00 0.00 0.00 3.07
2158 4253 4.024048 TCGAGCTTTTCTTGCAAAACCTAG 60.024 41.667 0.00 0.00 0.00 3.02
2183 4406 0.681564 ATCTTCAGGGACTCGCGAGT 60.682 55.000 39.89 39.89 45.84 4.18
2187 4410 0.248702 GTCGATCTTCAGGGACTCGC 60.249 60.000 0.00 0.00 34.60 5.03
2188 4411 1.384525 AGTCGATCTTCAGGGACTCG 58.615 55.000 0.00 0.00 34.86 4.18
2197 4420 4.749976 AGCCTAAAGACAAGTCGATCTTC 58.250 43.478 0.00 0.00 34.01 2.87
2208 4431 3.154710 TCTTGAGTCGAGCCTAAAGACA 58.845 45.455 2.07 0.00 37.36 3.41
2215 4438 3.176728 TCGATCTTGAGTCGAGCCT 57.823 52.632 2.07 0.00 42.57 4.58
2223 4446 7.355017 TCATTTTGTTTTGAGTCGATCTTGAG 58.645 34.615 0.00 0.00 0.00 3.02
2226 4449 8.019669 CAGATCATTTTGTTTTGAGTCGATCTT 58.980 33.333 0.00 0.00 35.97 2.40
2242 4465 6.992063 AAACGCTCATACTCAGATCATTTT 57.008 33.333 0.00 0.00 0.00 1.82
2290 4513 2.416747 TGTTGGCTCAAGATGAACTCG 58.583 47.619 0.00 0.00 0.00 4.18
2296 4519 8.797350 TCCATTATATATGTTGGCTCAAGATG 57.203 34.615 9.74 0.00 30.18 2.90
2340 4620 8.495949 GGAGAAAAACCATACACGACATATATG 58.504 37.037 11.29 11.29 0.00 1.78
2341 4621 8.208224 TGGAGAAAAACCATACACGACATATAT 58.792 33.333 0.00 0.00 32.03 0.86
2349 4629 8.980143 AATAAAATGGAGAAAAACCATACACG 57.020 30.769 0.00 0.00 45.89 4.49
2403 4683 3.614870 GCATGGTCAAAATTTTCTCCGCT 60.615 43.478 0.00 0.00 0.00 5.52
2424 4716 1.396996 CACGGCTACAAAGTACCATGC 59.603 52.381 0.00 0.00 0.00 4.06
2425 4717 2.415168 CACACGGCTACAAAGTACCATG 59.585 50.000 0.00 0.00 0.00 3.66
2442 4735 7.696453 CCGAAAATTACAGGATGATTAACACAC 59.304 37.037 0.00 0.00 39.69 3.82
2449 4742 7.176690 ACTTTGACCGAAAATTACAGGATGATT 59.823 33.333 0.73 0.00 39.69 2.57
2455 4748 6.500041 TCAAACTTTGACCGAAAATTACAGG 58.500 36.000 0.00 0.00 34.08 4.00
2456 4749 7.414436 TCTCAAACTTTGACCGAAAATTACAG 58.586 34.615 0.00 0.00 35.46 2.74
2458 4751 6.359883 GCTCTCAAACTTTGACCGAAAATTAC 59.640 38.462 0.00 0.00 35.46 1.89
2465 4758 2.102420 TCTGCTCTCAAACTTTGACCGA 59.898 45.455 0.00 0.00 35.46 4.69
2466 4759 2.221981 GTCTGCTCTCAAACTTTGACCG 59.778 50.000 0.00 0.00 35.46 4.79
2488 4781 5.362263 AGCATGCAAAGAAATTGAAGTTGT 58.638 33.333 21.98 0.00 41.85 3.32
2490 4783 6.752168 ACTAGCATGCAAAGAAATTGAAGTT 58.248 32.000 21.98 0.00 41.85 2.66
2500 4793 2.938451 CGGATGAACTAGCATGCAAAGA 59.062 45.455 21.98 1.55 36.53 2.52
2501 4794 2.540361 GCGGATGAACTAGCATGCAAAG 60.540 50.000 21.98 18.58 36.53 2.77
2504 4797 1.153597 CGCGGATGAACTAGCATGCA 61.154 55.000 21.98 5.01 36.53 3.96
2505 4798 0.875908 TCGCGGATGAACTAGCATGC 60.876 55.000 10.51 10.51 33.81 4.06
2506 4799 1.723542 GATCGCGGATGAACTAGCATG 59.276 52.381 6.13 0.00 0.00 4.06
2507 4800 1.615883 AGATCGCGGATGAACTAGCAT 59.384 47.619 6.13 0.00 0.00 3.79
2508 4801 1.001268 GAGATCGCGGATGAACTAGCA 60.001 52.381 6.13 0.00 0.00 3.49
2509 4802 1.268352 AGAGATCGCGGATGAACTAGC 59.732 52.381 6.13 0.00 0.00 3.42
2510 4803 3.304257 CAAGAGATCGCGGATGAACTAG 58.696 50.000 6.13 0.00 0.00 2.57
2514 4809 0.461548 AGCAAGAGATCGCGGATGAA 59.538 50.000 6.13 0.00 0.00 2.57
2542 4837 8.637196 TTCTCTCTCAACAGAAGACTAATACA 57.363 34.615 0.00 0.00 0.00 2.29
2546 4841 9.521841 TCTTATTCTCTCTCAACAGAAGACTAA 57.478 33.333 0.00 0.00 32.16 2.24
2547 4842 9.693739 ATCTTATTCTCTCTCAACAGAAGACTA 57.306 33.333 0.00 0.00 32.16 2.59
2548 4843 8.593945 ATCTTATTCTCTCTCAACAGAAGACT 57.406 34.615 0.00 0.00 32.16 3.24
2549 4844 8.465999 TGATCTTATTCTCTCTCAACAGAAGAC 58.534 37.037 0.00 0.00 32.16 3.01
2550 4845 8.586879 TGATCTTATTCTCTCTCAACAGAAGA 57.413 34.615 0.00 0.00 32.16 2.87
2551 4846 9.820725 ATTGATCTTATTCTCTCTCAACAGAAG 57.179 33.333 0.00 0.00 32.16 2.85
2555 4850 9.948964 TGAAATTGATCTTATTCTCTCTCAACA 57.051 29.630 0.00 0.00 0.00 3.33
2558 4853 9.388506 GGTTGAAATTGATCTTATTCTCTCTCA 57.611 33.333 0.00 0.00 0.00 3.27
2559 4854 9.388506 TGGTTGAAATTGATCTTATTCTCTCTC 57.611 33.333 0.00 0.00 0.00 3.20
2560 4855 9.171877 GTGGTTGAAATTGATCTTATTCTCTCT 57.828 33.333 0.00 0.00 0.00 3.10
2561 4856 9.171877 AGTGGTTGAAATTGATCTTATTCTCTC 57.828 33.333 0.00 0.00 0.00 3.20
2562 4857 9.171877 GAGTGGTTGAAATTGATCTTATTCTCT 57.828 33.333 0.00 0.00 0.00 3.10
2563 4858 8.950210 TGAGTGGTTGAAATTGATCTTATTCTC 58.050 33.333 0.00 0.00 0.00 2.87
2564 4859 8.734386 GTGAGTGGTTGAAATTGATCTTATTCT 58.266 33.333 0.00 0.00 0.00 2.40
2565 4860 8.734386 AGTGAGTGGTTGAAATTGATCTTATTC 58.266 33.333 0.00 0.00 0.00 1.75
2566 4861 8.641498 AGTGAGTGGTTGAAATTGATCTTATT 57.359 30.769 0.00 0.00 0.00 1.40
2567 4862 8.517878 CAAGTGAGTGGTTGAAATTGATCTTAT 58.482 33.333 0.00 0.00 0.00 1.73
2568 4863 7.719193 TCAAGTGAGTGGTTGAAATTGATCTTA 59.281 33.333 0.00 0.00 29.66 2.10
2569 4864 6.547141 TCAAGTGAGTGGTTGAAATTGATCTT 59.453 34.615 0.00 0.00 29.66 2.40
2570 4865 6.064060 TCAAGTGAGTGGTTGAAATTGATCT 58.936 36.000 0.00 0.00 29.66 2.75
2571 4866 6.317789 TCAAGTGAGTGGTTGAAATTGATC 57.682 37.500 0.00 0.00 29.66 2.92
2572 4867 6.906157 ATCAAGTGAGTGGTTGAAATTGAT 57.094 33.333 0.00 0.00 36.31 2.57
2573 4868 6.713762 AATCAAGTGAGTGGTTGAAATTGA 57.286 33.333 0.00 0.00 36.31 2.57
2574 4869 7.775397 AAAATCAAGTGAGTGGTTGAAATTG 57.225 32.000 0.00 0.00 36.31 2.32
2597 4892 5.535406 TCCCGTAAACCAGCTTTATGAAAAA 59.465 36.000 0.00 0.00 34.39 1.94
2598 4893 5.071370 TCCCGTAAACCAGCTTTATGAAAA 58.929 37.500 0.00 0.00 34.39 2.29
2599 4894 4.653868 TCCCGTAAACCAGCTTTATGAAA 58.346 39.130 0.00 0.00 34.39 2.69
2600 4895 4.289238 TCCCGTAAACCAGCTTTATGAA 57.711 40.909 0.00 0.00 34.39 2.57
2601 4896 3.985019 TCCCGTAAACCAGCTTTATGA 57.015 42.857 0.00 0.00 34.39 2.15
2602 4897 4.035208 GTCATCCCGTAAACCAGCTTTATG 59.965 45.833 0.00 0.00 32.85 1.90
2603 4898 4.196971 GTCATCCCGTAAACCAGCTTTAT 58.803 43.478 0.00 0.00 0.00 1.40
2604 4899 3.602483 GTCATCCCGTAAACCAGCTTTA 58.398 45.455 0.00 0.00 0.00 1.85
2605 4900 2.433436 GTCATCCCGTAAACCAGCTTT 58.567 47.619 0.00 0.00 0.00 3.51
2606 4901 1.339727 GGTCATCCCGTAAACCAGCTT 60.340 52.381 0.00 0.00 0.00 3.74
2607 4902 0.252197 GGTCATCCCGTAAACCAGCT 59.748 55.000 0.00 0.00 0.00 4.24
2608 4903 0.035820 TGGTCATCCCGTAAACCAGC 60.036 55.000 0.00 0.00 36.88 4.85
2609 4904 2.093181 TGATGGTCATCCCGTAAACCAG 60.093 50.000 8.30 0.00 44.52 4.00
2610 4905 1.909986 TGATGGTCATCCCGTAAACCA 59.090 47.619 8.30 0.00 45.32 3.67
2611 4906 2.702592 TGATGGTCATCCCGTAAACC 57.297 50.000 8.30 0.00 37.02 3.27
2612 4907 5.124776 TGAATTTGATGGTCATCCCGTAAAC 59.875 40.000 8.30 0.00 37.02 2.01
2613 4908 5.257262 TGAATTTGATGGTCATCCCGTAAA 58.743 37.500 8.30 3.35 37.02 2.01
2614 4909 4.849518 TGAATTTGATGGTCATCCCGTAA 58.150 39.130 8.30 0.00 37.02 3.18
2615 4910 4.450976 CTGAATTTGATGGTCATCCCGTA 58.549 43.478 8.30 0.00 37.02 4.02
2616 4911 3.282021 CTGAATTTGATGGTCATCCCGT 58.718 45.455 8.30 0.00 37.02 5.28
2617 4912 2.620115 CCTGAATTTGATGGTCATCCCG 59.380 50.000 8.30 0.00 37.02 5.14
2618 4913 2.961062 CCCTGAATTTGATGGTCATCCC 59.039 50.000 8.30 0.00 37.02 3.85
2619 4914 2.961062 CCCCTGAATTTGATGGTCATCC 59.039 50.000 8.30 0.00 37.02 3.51
2620 4915 3.902218 TCCCCTGAATTTGATGGTCATC 58.098 45.455 4.13 4.13 38.29 2.92
2621 4916 4.264532 ACTTCCCCTGAATTTGATGGTCAT 60.265 41.667 0.00 0.00 0.00 3.06
2622 4917 3.075882 ACTTCCCCTGAATTTGATGGTCA 59.924 43.478 0.00 0.00 0.00 4.02
2623 4918 3.701664 ACTTCCCCTGAATTTGATGGTC 58.298 45.455 0.00 0.00 0.00 4.02
2624 4919 3.833559 ACTTCCCCTGAATTTGATGGT 57.166 42.857 0.00 0.00 0.00 3.55
2625 4920 3.834231 ACAACTTCCCCTGAATTTGATGG 59.166 43.478 10.96 0.00 41.28 3.51
2626 4921 4.768968 AGACAACTTCCCCTGAATTTGATG 59.231 41.667 10.96 0.00 41.28 3.07
2627 4922 4.768968 CAGACAACTTCCCCTGAATTTGAT 59.231 41.667 10.96 0.00 41.28 2.57
2628 4923 4.141274 TCAGACAACTTCCCCTGAATTTGA 60.141 41.667 10.96 0.00 41.28 2.69
2629 4924 4.144297 TCAGACAACTTCCCCTGAATTTG 58.856 43.478 0.00 4.47 43.21 2.32
2630 4925 4.104738 TCTCAGACAACTTCCCCTGAATTT 59.895 41.667 0.00 0.00 35.52 1.82
2631 4926 3.652869 TCTCAGACAACTTCCCCTGAATT 59.347 43.478 0.00 0.00 35.52 2.17
2632 4927 3.251484 TCTCAGACAACTTCCCCTGAAT 58.749 45.455 0.00 0.00 35.52 2.57
2633 4928 2.634940 CTCTCAGACAACTTCCCCTGAA 59.365 50.000 0.00 0.00 35.52 3.02
2634 4929 2.251818 CTCTCAGACAACTTCCCCTGA 58.748 52.381 0.00 0.00 34.81 3.86
2635 4930 1.338579 GCTCTCAGACAACTTCCCCTG 60.339 57.143 0.00 0.00 0.00 4.45
2636 4931 0.980423 GCTCTCAGACAACTTCCCCT 59.020 55.000 0.00 0.00 0.00 4.79
2637 4932 0.687354 TGCTCTCAGACAACTTCCCC 59.313 55.000 0.00 0.00 0.00 4.81
2638 4933 2.147150 GTTGCTCTCAGACAACTTCCC 58.853 52.381 10.97 0.00 42.27 3.97
2643 4938 4.622701 ACAAAAGTTGCTCTCAGACAAC 57.377 40.909 10.49 10.49 45.15 3.32
2644 4939 5.880332 ACTTACAAAAGTTGCTCTCAGACAA 59.120 36.000 0.00 0.00 43.60 3.18
2645 4940 5.428253 ACTTACAAAAGTTGCTCTCAGACA 58.572 37.500 0.00 0.00 43.60 3.41
2646 4941 5.993106 ACTTACAAAAGTTGCTCTCAGAC 57.007 39.130 0.00 0.00 43.60 3.51
2713 5008 9.338968 TGCAGGTCCTAGGAAATTATCTATATT 57.661 33.333 14.65 0.00 0.00 1.28
2714 5009 8.917414 TGCAGGTCCTAGGAAATTATCTATAT 57.083 34.615 14.65 0.00 0.00 0.86
2715 5010 8.736097 TTGCAGGTCCTAGGAAATTATCTATA 57.264 34.615 14.65 0.00 0.00 1.31
2716 5011 7.293535 ACTTGCAGGTCCTAGGAAATTATCTAT 59.706 37.037 14.65 0.00 0.00 1.98
2717 5012 6.615726 ACTTGCAGGTCCTAGGAAATTATCTA 59.384 38.462 14.65 0.00 0.00 1.98
2718 5013 5.430089 ACTTGCAGGTCCTAGGAAATTATCT 59.570 40.000 14.65 1.84 0.00 1.98
2719 5014 5.685728 ACTTGCAGGTCCTAGGAAATTATC 58.314 41.667 14.65 0.00 0.00 1.75
2720 5015 5.685075 CGACTTGCAGGTCCTAGGAAATTAT 60.685 44.000 21.86 0.00 33.07 1.28
2721 5016 4.382685 CGACTTGCAGGTCCTAGGAAATTA 60.383 45.833 21.86 0.00 33.07 1.40
2722 5017 3.619979 CGACTTGCAGGTCCTAGGAAATT 60.620 47.826 21.86 0.00 33.07 1.82
2723 5018 2.093447 CGACTTGCAGGTCCTAGGAAAT 60.093 50.000 21.86 1.48 33.07 2.17
2724 5019 1.275291 CGACTTGCAGGTCCTAGGAAA 59.725 52.381 21.86 2.55 33.07 3.13
2725 5020 0.895530 CGACTTGCAGGTCCTAGGAA 59.104 55.000 21.86 0.00 33.07 3.36
2726 5021 0.970937 CCGACTTGCAGGTCCTAGGA 60.971 60.000 21.86 7.62 33.07 2.94
2727 5022 1.258445 ACCGACTTGCAGGTCCTAGG 61.258 60.000 21.86 18.87 35.50 3.02
2728 5023 0.108615 CACCGACTTGCAGGTCCTAG 60.109 60.000 21.86 13.67 39.00 3.02
2729 5024 0.541063 TCACCGACTTGCAGGTCCTA 60.541 55.000 21.86 3.57 39.00 2.94
2730 5025 1.837051 TCACCGACTTGCAGGTCCT 60.837 57.895 21.86 5.74 39.00 3.85
2731 5026 1.668151 GTCACCGACTTGCAGGTCC 60.668 63.158 21.86 5.00 39.00 4.46
2732 5027 1.069090 TGTCACCGACTTGCAGGTC 59.931 57.895 18.45 18.45 39.00 3.85
2733 5028 1.227556 GTGTCACCGACTTGCAGGT 60.228 57.895 0.00 0.00 42.34 4.00
2734 5029 2.310233 CGTGTCACCGACTTGCAGG 61.310 63.158 0.00 0.00 33.15 4.85
2735 5030 1.591594 ACGTGTCACCGACTTGCAG 60.592 57.895 0.00 0.00 33.15 4.41
2736 5031 1.880796 CACGTGTCACCGACTTGCA 60.881 57.895 7.58 0.00 33.15 4.08
2737 5032 0.944311 ATCACGTGTCACCGACTTGC 60.944 55.000 16.51 0.00 33.15 4.01
2738 5033 0.784178 CATCACGTGTCACCGACTTG 59.216 55.000 16.51 0.00 33.15 3.16
2739 5034 0.319555 CCATCACGTGTCACCGACTT 60.320 55.000 16.51 0.00 33.15 3.01
2740 5035 1.289066 CCATCACGTGTCACCGACT 59.711 57.895 16.51 0.00 33.15 4.18
2741 5036 1.006571 ACCATCACGTGTCACCGAC 60.007 57.895 16.51 0.00 0.00 4.79
2742 5037 1.006688 CACCATCACGTGTCACCGA 60.007 57.895 16.51 0.00 0.00 4.69
2743 5038 2.027073 CCACCATCACGTGTCACCG 61.027 63.158 16.51 2.86 31.47 4.94
2744 5039 1.671054 CCCACCATCACGTGTCACC 60.671 63.158 16.51 0.00 31.47 4.02
2745 5040 2.325082 GCCCACCATCACGTGTCAC 61.325 63.158 16.51 0.00 31.47 3.67
2746 5041 2.031919 GCCCACCATCACGTGTCA 59.968 61.111 16.51 0.00 31.47 3.58
2747 5042 3.118454 CGCCCACCATCACGTGTC 61.118 66.667 16.51 0.00 31.47 3.67
2748 5043 4.697756 CCGCCCACCATCACGTGT 62.698 66.667 16.51 0.00 31.47 4.49
2749 5044 4.697756 ACCGCCCACCATCACGTG 62.698 66.667 9.94 9.94 0.00 4.49
2750 5045 4.697756 CACCGCCCACCATCACGT 62.698 66.667 0.00 0.00 0.00 4.49
2754 5049 4.856801 ATCGCACCGCCCACCATC 62.857 66.667 0.00 0.00 0.00 3.51
2764 5059 4.760047 ACTGTCGGCCATCGCACC 62.760 66.667 2.24 0.00 39.05 5.01
2765 5060 3.490759 CACTGTCGGCCATCGCAC 61.491 66.667 2.24 0.00 39.05 5.34
2766 5061 4.002506 ACACTGTCGGCCATCGCA 62.003 61.111 2.24 0.00 39.05 5.10
2767 5062 3.490759 CACACTGTCGGCCATCGC 61.491 66.667 2.24 0.00 39.05 4.58
2768 5063 1.807165 CTCACACTGTCGGCCATCG 60.807 63.158 2.24 0.00 40.90 3.84
2769 5064 0.737715 GTCTCACACTGTCGGCCATC 60.738 60.000 2.24 0.00 0.00 3.51
2770 5065 1.293498 GTCTCACACTGTCGGCCAT 59.707 57.895 2.24 0.00 0.00 4.40
2771 5066 2.734591 GTCTCACACTGTCGGCCA 59.265 61.111 2.24 0.00 0.00 5.36
2772 5067 2.430921 CGTCTCACACTGTCGGCC 60.431 66.667 0.00 0.00 0.00 6.13
2773 5068 2.430921 CCGTCTCACACTGTCGGC 60.431 66.667 0.00 0.00 35.01 5.54
2774 5069 1.371758 CACCGTCTCACACTGTCGG 60.372 63.158 5.67 5.67 45.53 4.79
2775 5070 0.934901 CACACCGTCTCACACTGTCG 60.935 60.000 0.00 0.00 0.00 4.35
2776 5071 0.597637 CCACACCGTCTCACACTGTC 60.598 60.000 0.00 0.00 0.00 3.51
2777 5072 1.441729 CCACACCGTCTCACACTGT 59.558 57.895 0.00 0.00 0.00 3.55
2778 5073 1.956170 GCCACACCGTCTCACACTG 60.956 63.158 0.00 0.00 0.00 3.66
2779 5074 2.369257 CTGCCACACCGTCTCACACT 62.369 60.000 0.00 0.00 0.00 3.55
2780 5075 1.956170 CTGCCACACCGTCTCACAC 60.956 63.158 0.00 0.00 0.00 3.82
2781 5076 2.421314 CTGCCACACCGTCTCACA 59.579 61.111 0.00 0.00 0.00 3.58
2782 5077 3.044305 GCTGCCACACCGTCTCAC 61.044 66.667 0.00 0.00 0.00 3.51
2783 5078 3.233980 AGCTGCCACACCGTCTCA 61.234 61.111 0.00 0.00 0.00 3.27
2784 5079 2.740055 CAGCTGCCACACCGTCTC 60.740 66.667 0.00 0.00 0.00 3.36
2785 5080 4.996434 GCAGCTGCCACACCGTCT 62.996 66.667 28.76 0.00 34.31 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.