Multiple sequence alignment - TraesCS3A01G021400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G021400 chr3A 100.000 2288 0 0 1 2288 12252402 12254689 0.000000e+00 4226.0
1 TraesCS3A01G021400 chr3A 96.262 107 4 0 64 170 468531508 468531614 2.340000e-40 176.0
2 TraesCS3A01G021400 chr3A 94.643 112 6 0 64 175 739760868 739760979 8.400000e-40 174.0
3 TraesCS3A01G021400 chr3D 89.691 1455 80 25 640 2050 8831295 8829867 0.000000e+00 1792.0
4 TraesCS3A01G021400 chr3B 89.077 769 48 7 645 1390 10665524 10664769 0.000000e+00 922.0
5 TraesCS3A01G021400 chr3B 90.049 613 46 13 1440 2040 10664759 10664150 0.000000e+00 780.0
6 TraesCS3A01G021400 chr3B 95.495 111 5 0 64 174 99279150 99279260 6.500000e-41 178.0
7 TraesCS3A01G021400 chr6A 76.596 517 59 32 1060 1529 185232543 185233044 6.360000e-56 228.0
8 TraesCS3A01G021400 chr6B 88.514 148 17 0 774 921 240384340 240384487 1.810000e-41 180.0
9 TraesCS3A01G021400 chr5A 95.495 111 5 0 64 174 554692104 554691994 6.500000e-41 178.0
10 TraesCS3A01G021400 chr5A 96.262 107 4 0 64 170 394260095 394259989 2.340000e-40 176.0
11 TraesCS3A01G021400 chr5A 95.413 109 5 0 64 172 19969050 19968942 8.400000e-40 174.0
12 TraesCS3A01G021400 chr7A 95.455 110 5 0 64 173 26574492 26574601 2.340000e-40 176.0
13 TraesCS3A01G021400 chr7A 93.966 116 7 0 64 179 676396772 676396887 2.340000e-40 176.0
14 TraesCS3A01G021400 chr7A 94.545 110 6 0 64 173 385497005 385497114 1.090000e-38 171.0
15 TraesCS3A01G021400 chr1A 93.939 66 3 1 5 70 3725069 3725005 5.200000e-17 99.0
16 TraesCS3A01G021400 chr5B 84.848 66 9 1 1 65 387769629 387769694 5.280000e-07 65.8
17 TraesCS3A01G021400 chr1B 87.500 56 7 0 10 65 601263814 601263869 5.280000e-07 65.8
18 TraesCS3A01G021400 chr2D 83.333 66 7 2 1888 1949 38790603 38790668 8.830000e-05 58.4
19 TraesCS3A01G021400 chr2D 87.500 48 2 2 1888 1931 40909612 40909659 4.000000e-03 52.8
20 TraesCS3A01G021400 chr2A 83.333 66 7 2 1888 1949 44704127 44704192 8.830000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G021400 chr3A 12252402 12254689 2287 False 4226 4226 100.000 1 2288 1 chr3A.!!$F1 2287
1 TraesCS3A01G021400 chr3D 8829867 8831295 1428 True 1792 1792 89.691 640 2050 1 chr3D.!!$R1 1410
2 TraesCS3A01G021400 chr3B 10664150 10665524 1374 True 851 922 89.563 645 2040 2 chr3B.!!$R1 1395
3 TraesCS3A01G021400 chr6A 185232543 185233044 501 False 228 228 76.596 1060 1529 1 chr6A.!!$F1 469

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
542 543 0.031716 TAGCTGCCATCACTCTCCCT 60.032 55.0 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1403 1481 0.312102 CATCAGCTAGCGTGGATCGA 59.688 55.0 9.55 0.0 42.86 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.323985 TCTAATTGTGAAAAATTCTGGTTTTGG 57.676 29.630 0.00 0.00 32.02 3.28
32 33 9.323985 CTAATTGTGAAAAATTCTGGTTTTGGA 57.676 29.630 0.00 0.00 32.02 3.53
33 34 7.790823 ATTGTGAAAAATTCTGGTTTTGGAG 57.209 32.000 0.00 0.00 32.02 3.86
34 35 6.537453 TGTGAAAAATTCTGGTTTTGGAGA 57.463 33.333 0.00 0.00 32.02 3.71
35 36 7.123355 TGTGAAAAATTCTGGTTTTGGAGAT 57.877 32.000 0.00 0.00 32.02 2.75
36 37 8.243961 TGTGAAAAATTCTGGTTTTGGAGATA 57.756 30.769 0.00 0.00 32.02 1.98
37 38 8.141268 TGTGAAAAATTCTGGTTTTGGAGATAC 58.859 33.333 0.00 0.00 32.02 2.24
38 39 7.326063 GTGAAAAATTCTGGTTTTGGAGATACG 59.674 37.037 0.00 0.00 32.02 3.06
39 40 4.965119 AATTCTGGTTTTGGAGATACGC 57.035 40.909 0.00 0.00 0.00 4.42
40 41 2.396590 TCTGGTTTTGGAGATACGCC 57.603 50.000 0.00 0.00 0.00 5.68
41 42 1.065709 TCTGGTTTTGGAGATACGCCC 60.066 52.381 0.00 0.00 0.00 6.13
42 43 0.988832 TGGTTTTGGAGATACGCCCT 59.011 50.000 0.00 0.00 0.00 5.19
43 44 1.353022 TGGTTTTGGAGATACGCCCTT 59.647 47.619 0.00 0.00 0.00 3.95
44 45 2.224917 TGGTTTTGGAGATACGCCCTTT 60.225 45.455 0.00 0.00 0.00 3.11
45 46 3.009253 TGGTTTTGGAGATACGCCCTTTA 59.991 43.478 0.00 0.00 0.00 1.85
46 47 4.011698 GGTTTTGGAGATACGCCCTTTAA 58.988 43.478 0.00 0.00 0.00 1.52
47 48 4.460034 GGTTTTGGAGATACGCCCTTTAAA 59.540 41.667 0.00 0.00 0.00 1.52
48 49 5.126545 GGTTTTGGAGATACGCCCTTTAAAT 59.873 40.000 0.00 0.00 0.00 1.40
49 50 6.350696 GGTTTTGGAGATACGCCCTTTAAATT 60.351 38.462 0.00 0.00 0.00 1.82
50 51 5.828299 TTGGAGATACGCCCTTTAAATTG 57.172 39.130 0.00 0.00 0.00 2.32
51 52 4.850680 TGGAGATACGCCCTTTAAATTGT 58.149 39.130 0.00 0.00 0.00 2.71
52 53 4.638421 TGGAGATACGCCCTTTAAATTGTG 59.362 41.667 0.00 0.00 0.00 3.33
53 54 4.879545 GGAGATACGCCCTTTAAATTGTGA 59.120 41.667 5.08 0.00 0.00 3.58
54 55 5.531287 GGAGATACGCCCTTTAAATTGTGAT 59.469 40.000 5.08 0.00 0.00 3.06
55 56 6.377327 AGATACGCCCTTTAAATTGTGATG 57.623 37.500 5.08 0.00 0.00 3.07
56 57 6.119536 AGATACGCCCTTTAAATTGTGATGA 58.880 36.000 5.08 0.00 0.00 2.92
57 58 6.601613 AGATACGCCCTTTAAATTGTGATGAA 59.398 34.615 5.08 0.00 0.00 2.57
58 59 5.059404 ACGCCCTTTAAATTGTGATGAAG 57.941 39.130 5.08 0.00 0.00 3.02
59 60 4.082245 ACGCCCTTTAAATTGTGATGAAGG 60.082 41.667 5.08 0.00 34.76 3.46
60 61 4.157656 CGCCCTTTAAATTGTGATGAAGGA 59.842 41.667 0.00 0.00 36.59 3.36
61 62 5.336372 CGCCCTTTAAATTGTGATGAAGGAA 60.336 40.000 0.00 0.00 36.59 3.36
62 63 6.101997 GCCCTTTAAATTGTGATGAAGGAAG 58.898 40.000 0.00 0.00 36.59 3.46
63 64 6.295292 GCCCTTTAAATTGTGATGAAGGAAGT 60.295 38.462 0.00 0.00 36.59 3.01
64 65 7.093945 GCCCTTTAAATTGTGATGAAGGAAGTA 60.094 37.037 0.00 0.00 36.59 2.24
65 66 8.971073 CCCTTTAAATTGTGATGAAGGAAGTAT 58.029 33.333 0.00 0.00 36.59 2.12
66 67 9.793252 CCTTTAAATTGTGATGAAGGAAGTATG 57.207 33.333 0.00 0.00 36.59 2.39
71 72 9.911788 AAATTGTGATGAAGGAAGTATGATACT 57.088 29.630 0.00 0.00 41.73 2.12
72 73 9.553064 AATTGTGATGAAGGAAGTATGATACTC 57.447 33.333 5.45 0.13 38.26 2.59
73 74 7.660030 TGTGATGAAGGAAGTATGATACTCA 57.340 36.000 5.45 0.00 38.26 3.41
74 75 8.078060 TGTGATGAAGGAAGTATGATACTCAA 57.922 34.615 5.45 0.00 38.26 3.02
75 76 8.200120 TGTGATGAAGGAAGTATGATACTCAAG 58.800 37.037 5.45 0.00 38.26 3.02
76 77 7.170658 GTGATGAAGGAAGTATGATACTCAAGC 59.829 40.741 5.45 0.00 38.26 4.01
77 78 5.918608 TGAAGGAAGTATGATACTCAAGCC 58.081 41.667 5.45 5.76 38.26 4.35
78 79 5.663106 TGAAGGAAGTATGATACTCAAGCCT 59.337 40.000 5.45 7.79 38.26 4.58
79 80 5.799827 AGGAAGTATGATACTCAAGCCTC 57.200 43.478 5.45 0.00 38.26 4.70
80 81 5.463154 AGGAAGTATGATACTCAAGCCTCT 58.537 41.667 5.45 0.00 38.26 3.69
81 82 5.538433 AGGAAGTATGATACTCAAGCCTCTC 59.462 44.000 5.45 0.00 38.26 3.20
82 83 5.538433 GGAAGTATGATACTCAAGCCTCTCT 59.462 44.000 5.45 0.00 38.26 3.10
83 84 6.041523 GGAAGTATGATACTCAAGCCTCTCTT 59.958 42.308 5.45 0.00 38.26 2.85
84 85 7.418483 GGAAGTATGATACTCAAGCCTCTCTTT 60.418 40.741 5.45 0.00 38.26 2.52
85 86 7.049799 AGTATGATACTCAAGCCTCTCTTTC 57.950 40.000 0.00 0.00 32.47 2.62
86 87 6.838612 AGTATGATACTCAAGCCTCTCTTTCT 59.161 38.462 0.00 0.00 32.47 2.52
87 88 6.558488 ATGATACTCAAGCCTCTCTTTCTT 57.442 37.500 0.00 0.00 31.27 2.52
88 89 5.971763 TGATACTCAAGCCTCTCTTTCTTC 58.028 41.667 0.00 0.00 31.27 2.87
89 90 5.481824 TGATACTCAAGCCTCTCTTTCTTCA 59.518 40.000 0.00 0.00 31.27 3.02
90 91 4.906747 ACTCAAGCCTCTCTTTCTTCAT 57.093 40.909 0.00 0.00 31.27 2.57
91 92 5.240013 ACTCAAGCCTCTCTTTCTTCATT 57.760 39.130 0.00 0.00 31.27 2.57
92 93 5.629125 ACTCAAGCCTCTCTTTCTTCATTT 58.371 37.500 0.00 0.00 31.27 2.32
93 94 6.773638 ACTCAAGCCTCTCTTTCTTCATTTA 58.226 36.000 0.00 0.00 31.27 1.40
94 95 7.227156 ACTCAAGCCTCTCTTTCTTCATTTAA 58.773 34.615 0.00 0.00 31.27 1.52
95 96 7.887495 ACTCAAGCCTCTCTTTCTTCATTTAAT 59.113 33.333 0.00 0.00 31.27 1.40
96 97 8.641498 TCAAGCCTCTCTTTCTTCATTTAATT 57.359 30.769 0.00 0.00 31.27 1.40
97 98 8.734386 TCAAGCCTCTCTTTCTTCATTTAATTC 58.266 33.333 0.00 0.00 31.27 2.17
98 99 8.738106 CAAGCCTCTCTTTCTTCATTTAATTCT 58.262 33.333 0.00 0.00 31.27 2.40
99 100 9.965902 AAGCCTCTCTTTCTTCATTTAATTCTA 57.034 29.630 0.00 0.00 0.00 2.10
119 120 6.426980 TCTATGTCACATCATCAAACTTGC 57.573 37.500 0.00 0.00 0.00 4.01
120 121 6.175471 TCTATGTCACATCATCAAACTTGCT 58.825 36.000 0.00 0.00 0.00 3.91
121 122 5.717078 ATGTCACATCATCAAACTTGCTT 57.283 34.783 0.00 0.00 0.00 3.91
122 123 6.822667 ATGTCACATCATCAAACTTGCTTA 57.177 33.333 0.00 0.00 0.00 3.09
123 124 6.245115 TGTCACATCATCAAACTTGCTTAG 57.755 37.500 0.00 0.00 0.00 2.18
124 125 5.764686 TGTCACATCATCAAACTTGCTTAGT 59.235 36.000 0.00 0.00 39.32 2.24
126 127 6.580041 GTCACATCATCAAACTTGCTTAGTTG 59.420 38.462 5.71 0.00 46.34 3.16
127 128 6.486320 TCACATCATCAAACTTGCTTAGTTGA 59.514 34.615 5.71 1.63 46.34 3.18
128 129 6.580041 CACATCATCAAACTTGCTTAGTTGAC 59.420 38.462 5.71 0.00 46.34 3.18
129 130 6.262944 ACATCATCAAACTTGCTTAGTTGACA 59.737 34.615 5.71 0.00 46.34 3.58
130 131 6.882610 TCATCAAACTTGCTTAGTTGACAT 57.117 33.333 5.71 0.00 46.34 3.06
131 132 6.671190 TCATCAAACTTGCTTAGTTGACATG 58.329 36.000 5.71 0.00 46.34 3.21
132 133 6.262944 TCATCAAACTTGCTTAGTTGACATGT 59.737 34.615 0.00 0.00 46.34 3.21
133 134 7.443879 TCATCAAACTTGCTTAGTTGACATGTA 59.556 33.333 0.00 0.00 46.34 2.29
134 135 7.744087 TCAAACTTGCTTAGTTGACATGTAT 57.256 32.000 0.00 0.00 46.34 2.29
135 136 7.584108 TCAAACTTGCTTAGTTGACATGTATG 58.416 34.615 0.00 0.00 46.34 2.39
136 137 7.443879 TCAAACTTGCTTAGTTGACATGTATGA 59.556 33.333 0.00 1.85 46.34 2.15
137 138 7.928307 AACTTGCTTAGTTGACATGTATGAT 57.072 32.000 0.00 0.00 45.33 2.45
138 139 9.448438 AAACTTGCTTAGTTGACATGTATGATA 57.552 29.630 0.00 0.00 46.34 2.15
139 140 8.425577 ACTTGCTTAGTTGACATGTATGATAC 57.574 34.615 0.00 0.00 31.29 2.24
140 141 8.260818 ACTTGCTTAGTTGACATGTATGATACT 58.739 33.333 0.00 0.86 31.29 2.12
141 142 9.750125 CTTGCTTAGTTGACATGTATGATACTA 57.250 33.333 0.00 0.00 0.00 1.82
142 143 9.529325 TTGCTTAGTTGACATGTATGATACTAC 57.471 33.333 0.00 0.00 0.00 2.73
143 144 8.141909 TGCTTAGTTGACATGTATGATACTACC 58.858 37.037 0.00 0.00 0.00 3.18
144 145 8.361139 GCTTAGTTGACATGTATGATACTACCT 58.639 37.037 0.00 0.00 0.00 3.08
148 149 9.588096 AGTTGACATGTATGATACTACCTATGA 57.412 33.333 0.00 0.00 0.00 2.15
155 156 9.869667 ATGTATGATACTACCTATGATACTCCC 57.130 37.037 4.03 0.00 34.58 4.30
156 157 8.842764 TGTATGATACTACCTATGATACTCCCA 58.157 37.037 4.03 0.00 34.58 4.37
157 158 9.869667 GTATGATACTACCTATGATACTCCCAT 57.130 37.037 0.00 0.00 32.13 4.00
160 161 9.696572 TGATACTACCTATGATACTCCCATTAC 57.303 37.037 0.00 0.00 0.00 1.89
161 162 8.749026 ATACTACCTATGATACTCCCATTACG 57.251 38.462 0.00 0.00 0.00 3.18
162 163 5.950549 ACTACCTATGATACTCCCATTACGG 59.049 44.000 0.00 0.00 0.00 4.02
171 172 2.589540 CCATTACGGGCAGCCTCA 59.410 61.111 12.43 0.00 0.00 3.86
172 173 1.524621 CCATTACGGGCAGCCTCAG 60.525 63.158 12.43 5.97 0.00 3.35
173 174 1.524621 CATTACGGGCAGCCTCAGG 60.525 63.158 12.43 0.94 0.00 3.86
174 175 2.746375 ATTACGGGCAGCCTCAGGG 61.746 63.158 12.43 0.00 0.00 4.45
215 216 5.659048 GGGACGATTCTGCTTTATTACTG 57.341 43.478 0.00 0.00 0.00 2.74
216 217 4.024809 GGGACGATTCTGCTTTATTACTGC 60.025 45.833 0.00 0.00 0.00 4.40
217 218 4.570772 GGACGATTCTGCTTTATTACTGCA 59.429 41.667 0.00 0.00 35.30 4.41
218 219 5.237344 GGACGATTCTGCTTTATTACTGCAT 59.763 40.000 0.00 0.00 36.07 3.96
219 220 6.423905 GGACGATTCTGCTTTATTACTGCATA 59.576 38.462 0.00 0.00 36.07 3.14
220 221 7.178712 ACGATTCTGCTTTATTACTGCATAC 57.821 36.000 0.00 0.00 36.07 2.39
221 222 6.761242 ACGATTCTGCTTTATTACTGCATACA 59.239 34.615 0.00 0.00 36.07 2.29
222 223 7.065894 CGATTCTGCTTTATTACTGCATACAC 58.934 38.462 0.00 0.00 36.07 2.90
223 224 6.677781 TTCTGCTTTATTACTGCATACACC 57.322 37.500 0.00 0.00 36.07 4.16
224 225 5.739959 TCTGCTTTATTACTGCATACACCA 58.260 37.500 0.00 0.00 36.07 4.17
225 226 5.584649 TCTGCTTTATTACTGCATACACCAC 59.415 40.000 0.00 0.00 36.07 4.16
226 227 4.331443 TGCTTTATTACTGCATACACCACG 59.669 41.667 0.00 0.00 0.00 4.94
227 228 4.331717 GCTTTATTACTGCATACACCACGT 59.668 41.667 0.00 0.00 0.00 4.49
228 229 5.163794 GCTTTATTACTGCATACACCACGTT 60.164 40.000 0.00 0.00 0.00 3.99
229 230 6.622028 GCTTTATTACTGCATACACCACGTTT 60.622 38.462 0.00 0.00 0.00 3.60
230 231 6.804770 TTATTACTGCATACACCACGTTTT 57.195 33.333 0.00 0.00 0.00 2.43
231 232 4.475763 TTACTGCATACACCACGTTTTG 57.524 40.909 0.00 0.00 0.00 2.44
232 233 2.294074 ACTGCATACACCACGTTTTGT 58.706 42.857 4.32 4.32 0.00 2.83
233 234 2.685897 ACTGCATACACCACGTTTTGTT 59.314 40.909 4.20 0.00 0.00 2.83
234 235 3.129638 ACTGCATACACCACGTTTTGTTT 59.870 39.130 4.20 0.00 0.00 2.83
235 236 4.335874 ACTGCATACACCACGTTTTGTTTA 59.664 37.500 4.20 0.00 0.00 2.01
236 237 5.009210 ACTGCATACACCACGTTTTGTTTAT 59.991 36.000 4.20 0.00 0.00 1.40
237 238 5.833082 TGCATACACCACGTTTTGTTTATT 58.167 33.333 4.20 0.00 0.00 1.40
238 239 5.915758 TGCATACACCACGTTTTGTTTATTC 59.084 36.000 4.20 0.00 0.00 1.75
239 240 5.915758 GCATACACCACGTTTTGTTTATTCA 59.084 36.000 4.20 0.00 0.00 2.57
240 241 6.087555 GCATACACCACGTTTTGTTTATTCAG 59.912 38.462 4.20 0.00 0.00 3.02
241 242 5.570234 ACACCACGTTTTGTTTATTCAGT 57.430 34.783 0.00 0.00 0.00 3.41
242 243 6.680874 ACACCACGTTTTGTTTATTCAGTA 57.319 33.333 0.00 0.00 0.00 2.74
243 244 7.086230 ACACCACGTTTTGTTTATTCAGTAA 57.914 32.000 0.00 0.00 0.00 2.24
244 245 7.708998 ACACCACGTTTTGTTTATTCAGTAAT 58.291 30.769 0.00 0.00 0.00 1.89
245 246 8.192110 ACACCACGTTTTGTTTATTCAGTAATT 58.808 29.630 0.00 0.00 0.00 1.40
246 247 8.687301 CACCACGTTTTGTTTATTCAGTAATTC 58.313 33.333 0.00 0.00 0.00 2.17
247 248 8.626526 ACCACGTTTTGTTTATTCAGTAATTCT 58.373 29.630 0.00 0.00 0.00 2.40
248 249 8.901748 CCACGTTTTGTTTATTCAGTAATTCTG 58.098 33.333 0.00 0.00 44.85 3.02
249 250 9.445786 CACGTTTTGTTTATTCAGTAATTCTGT 57.554 29.630 0.00 0.00 43.97 3.41
250 251 9.659830 ACGTTTTGTTTATTCAGTAATTCTGTC 57.340 29.630 0.00 0.00 43.97 3.51
251 252 8.827599 CGTTTTGTTTATTCAGTAATTCTGTCG 58.172 33.333 5.26 0.00 43.97 4.35
252 253 9.659830 GTTTTGTTTATTCAGTAATTCTGTCGT 57.340 29.630 5.26 0.00 43.97 4.34
253 254 9.658475 TTTTGTTTATTCAGTAATTCTGTCGTG 57.342 29.630 5.26 0.00 43.97 4.35
254 255 7.956420 TGTTTATTCAGTAATTCTGTCGTGT 57.044 32.000 5.26 0.00 43.97 4.49
255 256 8.373048 TGTTTATTCAGTAATTCTGTCGTGTT 57.627 30.769 5.26 0.00 43.97 3.32
256 257 9.478768 TGTTTATTCAGTAATTCTGTCGTGTTA 57.521 29.630 5.26 0.00 43.97 2.41
257 258 9.737025 GTTTATTCAGTAATTCTGTCGTGTTAC 57.263 33.333 5.26 0.00 43.97 2.50
258 259 6.627690 ATTCAGTAATTCTGTCGTGTTACG 57.372 37.500 0.00 0.00 43.97 3.18
259 260 4.478699 TCAGTAATTCTGTCGTGTTACGG 58.521 43.478 1.24 0.00 43.97 4.02
260 261 4.022935 TCAGTAATTCTGTCGTGTTACGGT 60.023 41.667 1.24 0.00 43.97 4.83
261 262 4.682860 CAGTAATTCTGTCGTGTTACGGTT 59.317 41.667 1.24 0.00 37.44 4.44
262 263 5.858049 CAGTAATTCTGTCGTGTTACGGTTA 59.142 40.000 1.24 0.00 37.44 2.85
263 264 6.363088 CAGTAATTCTGTCGTGTTACGGTTAA 59.637 38.462 1.24 0.00 37.44 2.01
264 265 7.062605 CAGTAATTCTGTCGTGTTACGGTTAAT 59.937 37.037 1.24 0.00 37.44 1.40
265 266 6.399204 AATTCTGTCGTGTTACGGTTAATC 57.601 37.500 1.24 0.00 42.81 1.75
266 267 3.491356 TCTGTCGTGTTACGGTTAATCG 58.509 45.455 6.57 6.57 42.81 3.34
267 268 3.058293 TCTGTCGTGTTACGGTTAATCGT 60.058 43.478 19.07 19.07 42.81 3.73
268 269 3.233578 TGTCGTGTTACGGTTAATCGTC 58.766 45.455 18.62 4.94 42.81 4.20
269 270 2.273718 GTCGTGTTACGGTTAATCGTCG 59.726 50.000 18.62 14.92 42.81 5.12
270 271 2.158645 TCGTGTTACGGTTAATCGTCGA 59.841 45.455 18.62 17.04 42.81 4.20
271 272 2.273718 CGTGTTACGGTTAATCGTCGAC 59.726 50.000 18.62 17.28 42.82 4.20
272 273 2.594214 GTGTTACGGTTAATCGTCGACC 59.406 50.000 18.62 8.33 42.82 4.79
273 274 2.227626 TGTTACGGTTAATCGTCGACCA 59.772 45.455 18.62 7.45 42.82 4.02
274 275 3.119531 TGTTACGGTTAATCGTCGACCAT 60.120 43.478 18.62 0.00 42.82 3.55
275 276 4.095632 TGTTACGGTTAATCGTCGACCATA 59.904 41.667 18.62 0.00 42.82 2.74
276 277 3.781079 ACGGTTAATCGTCGACCATAA 57.219 42.857 8.23 4.22 39.34 1.90
277 278 3.699067 ACGGTTAATCGTCGACCATAAG 58.301 45.455 8.23 0.00 39.34 1.73
278 279 3.047796 CGGTTAATCGTCGACCATAAGG 58.952 50.000 10.58 0.00 42.21 2.69
279 280 3.387397 GGTTAATCGTCGACCATAAGGG 58.613 50.000 10.58 0.00 44.81 3.95
280 281 3.068590 GGTTAATCGTCGACCATAAGGGA 59.931 47.826 10.58 0.00 41.15 4.20
281 282 4.296690 GTTAATCGTCGACCATAAGGGAG 58.703 47.826 10.58 0.00 41.15 4.30
282 283 2.068834 ATCGTCGACCATAAGGGAGT 57.931 50.000 10.58 0.00 41.15 3.85
283 284 2.715749 TCGTCGACCATAAGGGAGTA 57.284 50.000 10.58 0.00 41.15 2.59
284 285 2.292267 TCGTCGACCATAAGGGAGTAC 58.708 52.381 10.58 0.00 41.15 2.73
285 286 1.336125 CGTCGACCATAAGGGAGTACC 59.664 57.143 10.58 0.00 41.15 3.34
286 287 2.381911 GTCGACCATAAGGGAGTACCA 58.618 52.381 3.51 0.00 43.89 3.25
287 288 2.361438 GTCGACCATAAGGGAGTACCAG 59.639 54.545 3.51 0.00 43.89 4.00
288 289 2.024655 TCGACCATAAGGGAGTACCAGT 60.025 50.000 0.00 0.00 43.89 4.00
289 290 2.764572 CGACCATAAGGGAGTACCAGTT 59.235 50.000 0.00 0.00 43.89 3.16
290 291 3.197116 CGACCATAAGGGAGTACCAGTTT 59.803 47.826 0.00 0.00 43.89 2.66
291 292 4.403432 CGACCATAAGGGAGTACCAGTTTA 59.597 45.833 0.00 0.00 43.89 2.01
292 293 5.070047 CGACCATAAGGGAGTACCAGTTTAT 59.930 44.000 0.00 0.00 43.89 1.40
293 294 6.407752 CGACCATAAGGGAGTACCAGTTTATT 60.408 42.308 0.00 0.00 43.89 1.40
294 295 7.201938 CGACCATAAGGGAGTACCAGTTTATTA 60.202 40.741 0.00 0.00 43.89 0.98
295 296 8.030913 ACCATAAGGGAGTACCAGTTTATTAG 57.969 38.462 0.00 0.00 43.89 1.73
296 297 7.626487 ACCATAAGGGAGTACCAGTTTATTAGT 59.374 37.037 0.00 0.00 43.89 2.24
297 298 8.148999 CCATAAGGGAGTACCAGTTTATTAGTC 58.851 40.741 0.00 0.00 43.89 2.59
298 299 6.556974 AAGGGAGTACCAGTTTATTAGTCC 57.443 41.667 0.00 0.00 43.89 3.85
299 300 5.851418 AGGGAGTACCAGTTTATTAGTCCT 58.149 41.667 0.00 0.00 43.89 3.85
300 301 5.898397 AGGGAGTACCAGTTTATTAGTCCTC 59.102 44.000 0.00 0.00 43.89 3.71
301 302 5.070180 GGGAGTACCAGTTTATTAGTCCTCC 59.930 48.000 0.00 0.00 39.85 4.30
302 303 5.221204 GGAGTACCAGTTTATTAGTCCTCCG 60.221 48.000 0.00 0.00 33.91 4.63
303 304 5.267587 AGTACCAGTTTATTAGTCCTCCGT 58.732 41.667 0.00 0.00 0.00 4.69
304 305 5.718607 AGTACCAGTTTATTAGTCCTCCGTT 59.281 40.000 0.00 0.00 0.00 4.44
305 306 5.494390 ACCAGTTTATTAGTCCTCCGTTT 57.506 39.130 0.00 0.00 0.00 3.60
306 307 5.243207 ACCAGTTTATTAGTCCTCCGTTTG 58.757 41.667 0.00 0.00 0.00 2.93
307 308 5.012354 ACCAGTTTATTAGTCCTCCGTTTGA 59.988 40.000 0.00 0.00 0.00 2.69
308 309 5.935789 CCAGTTTATTAGTCCTCCGTTTGAA 59.064 40.000 0.00 0.00 0.00 2.69
309 310 6.092259 CCAGTTTATTAGTCCTCCGTTTGAAG 59.908 42.308 0.00 0.00 0.00 3.02
310 311 5.642491 AGTTTATTAGTCCTCCGTTTGAAGC 59.358 40.000 0.00 0.00 0.00 3.86
311 312 3.983044 ATTAGTCCTCCGTTTGAAGCT 57.017 42.857 0.00 0.00 0.00 3.74
312 313 6.534475 TTATTAGTCCTCCGTTTGAAGCTA 57.466 37.500 0.00 0.00 0.00 3.32
313 314 4.877378 TTAGTCCTCCGTTTGAAGCTAA 57.123 40.909 0.00 0.00 0.00 3.09
314 315 3.983044 AGTCCTCCGTTTGAAGCTAAT 57.017 42.857 0.00 0.00 0.00 1.73
315 316 4.287766 AGTCCTCCGTTTGAAGCTAATT 57.712 40.909 0.00 0.00 0.00 1.40
316 317 5.416271 AGTCCTCCGTTTGAAGCTAATTA 57.584 39.130 0.00 0.00 0.00 1.40
317 318 5.176592 AGTCCTCCGTTTGAAGCTAATTAC 58.823 41.667 0.00 0.00 0.00 1.89
318 319 5.046520 AGTCCTCCGTTTGAAGCTAATTACT 60.047 40.000 0.00 0.00 0.00 2.24
319 320 5.291371 GTCCTCCGTTTGAAGCTAATTACTC 59.709 44.000 0.00 0.00 0.00 2.59
320 321 4.571176 CCTCCGTTTGAAGCTAATTACTCC 59.429 45.833 0.00 0.00 0.00 3.85
321 322 5.155278 TCCGTTTGAAGCTAATTACTCCA 57.845 39.130 0.00 0.00 0.00 3.86
322 323 5.175859 TCCGTTTGAAGCTAATTACTCCAG 58.824 41.667 0.00 0.00 0.00 3.86
323 324 4.935808 CCGTTTGAAGCTAATTACTCCAGT 59.064 41.667 0.00 0.00 0.00 4.00
324 325 6.071221 TCCGTTTGAAGCTAATTACTCCAGTA 60.071 38.462 0.00 0.00 0.00 2.74
325 326 6.761714 CCGTTTGAAGCTAATTACTCCAGTAT 59.238 38.462 0.00 0.00 0.00 2.12
326 327 7.924412 CCGTTTGAAGCTAATTACTCCAGTATA 59.076 37.037 0.00 0.00 0.00 1.47
327 328 9.477484 CGTTTGAAGCTAATTACTCCAGTATAT 57.523 33.333 0.00 0.00 0.00 0.86
377 378 7.971183 ATATTAAAGTTGCTAAGCTAGGAGC 57.029 36.000 7.98 7.98 42.84 4.70
378 379 2.700722 AAGTTGCTAAGCTAGGAGCC 57.299 50.000 11.48 0.00 43.77 4.70
379 380 0.833949 AGTTGCTAAGCTAGGAGCCC 59.166 55.000 11.48 4.11 43.77 5.19
380 381 0.179043 GTTGCTAAGCTAGGAGCCCC 60.179 60.000 11.48 0.76 43.77 5.80
381 382 1.345715 TTGCTAAGCTAGGAGCCCCC 61.346 60.000 11.48 0.00 43.77 5.40
383 384 1.476845 GCTAAGCTAGGAGCCCCCTC 61.477 65.000 0.00 0.00 43.31 4.30
417 418 5.804692 TTTTTAGTGCTTCACGAAGTTGA 57.195 34.783 8.51 0.00 41.61 3.18
418 419 4.789095 TTTAGTGCTTCACGAAGTTGAC 57.211 40.909 8.51 3.83 41.61 3.18
419 420 2.309528 AGTGCTTCACGAAGTTGACA 57.690 45.000 8.51 0.00 41.61 3.58
420 421 1.933853 AGTGCTTCACGAAGTTGACAC 59.066 47.619 8.51 7.65 41.61 3.67
421 422 1.933853 GTGCTTCACGAAGTTGACACT 59.066 47.619 8.51 0.00 41.61 3.55
422 423 2.033662 GTGCTTCACGAAGTTGACACTC 60.034 50.000 8.51 0.00 41.61 3.51
423 424 2.201732 GCTTCACGAAGTTGACACTCA 58.798 47.619 8.51 0.00 41.61 3.41
424 425 2.033662 GCTTCACGAAGTTGACACTCAC 60.034 50.000 8.51 0.00 41.61 3.51
425 426 2.951457 TCACGAAGTTGACACTCACA 57.049 45.000 0.00 0.00 41.61 3.58
426 427 2.536365 TCACGAAGTTGACACTCACAC 58.464 47.619 0.00 0.00 41.61 3.82
427 428 1.255342 CACGAAGTTGACACTCACACG 59.745 52.381 0.00 0.00 41.61 4.49
428 429 1.135199 ACGAAGTTGACACTCACACGT 60.135 47.619 0.00 0.00 37.78 4.49
429 430 1.255342 CGAAGTTGACACTCACACGTG 59.745 52.381 15.48 15.48 40.67 4.49
430 431 2.536365 GAAGTTGACACTCACACGTGA 58.464 47.619 25.01 0.00 38.27 4.35
431 432 1.922570 AGTTGACACTCACACGTGAC 58.077 50.000 25.01 6.33 38.27 3.67
432 433 1.203758 AGTTGACACTCACACGTGACA 59.796 47.619 25.01 6.80 37.69 3.58
433 434 1.588404 GTTGACACTCACACGTGACAG 59.412 52.381 25.01 18.62 39.80 3.51
434 435 0.527600 TGACACTCACACGTGACAGC 60.528 55.000 25.01 5.14 35.33 4.40
435 436 0.527600 GACACTCACACGTGACAGCA 60.528 55.000 25.01 0.00 38.27 4.41
436 437 0.108377 ACACTCACACGTGACAGCAA 60.108 50.000 25.01 0.00 38.27 3.91
437 438 1.220529 CACTCACACGTGACAGCAAT 58.779 50.000 25.01 0.00 37.06 3.56
438 439 1.070376 CACTCACACGTGACAGCAATG 60.070 52.381 25.01 8.23 37.06 2.82
439 440 1.202521 ACTCACACGTGACAGCAATGA 60.203 47.619 25.01 12.44 35.46 2.57
440 441 1.866601 CTCACACGTGACAGCAATGAA 59.133 47.619 25.01 0.00 35.46 2.57
441 442 2.284190 TCACACGTGACAGCAATGAAA 58.716 42.857 25.01 0.00 34.14 2.69
442 443 2.031560 TCACACGTGACAGCAATGAAAC 59.968 45.455 25.01 0.00 34.14 2.78
443 444 2.013400 ACACGTGACAGCAATGAAACA 58.987 42.857 25.01 0.00 0.00 2.83
444 445 2.032054 ACACGTGACAGCAATGAAACAG 59.968 45.455 25.01 0.00 0.00 3.16
445 446 2.032054 CACGTGACAGCAATGAAACAGT 59.968 45.455 10.90 0.00 0.00 3.55
446 447 3.247411 CACGTGACAGCAATGAAACAGTA 59.753 43.478 10.90 0.00 0.00 2.74
447 448 3.247648 ACGTGACAGCAATGAAACAGTAC 59.752 43.478 0.00 0.00 0.00 2.73
448 449 3.363970 CGTGACAGCAATGAAACAGTACC 60.364 47.826 0.00 0.00 0.00 3.34
449 450 3.058224 GTGACAGCAATGAAACAGTACCC 60.058 47.826 0.00 0.00 0.00 3.69
450 451 2.488153 GACAGCAATGAAACAGTACCCC 59.512 50.000 0.00 0.00 0.00 4.95
451 452 2.158534 ACAGCAATGAAACAGTACCCCA 60.159 45.455 0.00 0.00 0.00 4.96
452 453 2.890311 CAGCAATGAAACAGTACCCCAA 59.110 45.455 0.00 0.00 0.00 4.12
453 454 3.057315 CAGCAATGAAACAGTACCCCAAG 60.057 47.826 0.00 0.00 0.00 3.61
454 455 3.153919 GCAATGAAACAGTACCCCAAGA 58.846 45.455 0.00 0.00 0.00 3.02
455 456 3.572255 GCAATGAAACAGTACCCCAAGAA 59.428 43.478 0.00 0.00 0.00 2.52
456 457 4.220602 GCAATGAAACAGTACCCCAAGAAT 59.779 41.667 0.00 0.00 0.00 2.40
457 458 5.713025 CAATGAAACAGTACCCCAAGAATG 58.287 41.667 0.00 0.00 0.00 2.67
458 459 4.715534 TGAAACAGTACCCCAAGAATGA 57.284 40.909 0.00 0.00 0.00 2.57
459 460 5.055265 TGAAACAGTACCCCAAGAATGAA 57.945 39.130 0.00 0.00 0.00 2.57
460 461 5.640147 TGAAACAGTACCCCAAGAATGAAT 58.360 37.500 0.00 0.00 0.00 2.57
461 462 6.785076 TGAAACAGTACCCCAAGAATGAATA 58.215 36.000 0.00 0.00 0.00 1.75
462 463 6.884295 TGAAACAGTACCCCAAGAATGAATAG 59.116 38.462 0.00 0.00 0.00 1.73
463 464 6.388619 AACAGTACCCCAAGAATGAATAGT 57.611 37.500 0.00 0.00 0.00 2.12
464 465 7.504926 AACAGTACCCCAAGAATGAATAGTA 57.495 36.000 0.00 0.00 0.00 1.82
465 466 6.885922 ACAGTACCCCAAGAATGAATAGTAC 58.114 40.000 0.00 0.00 0.00 2.73
466 467 6.442564 ACAGTACCCCAAGAATGAATAGTACA 59.557 38.462 0.00 0.00 33.06 2.90
467 468 7.127339 ACAGTACCCCAAGAATGAATAGTACAT 59.873 37.037 0.00 0.00 33.06 2.29
468 469 7.657761 CAGTACCCCAAGAATGAATAGTACATC 59.342 40.741 0.00 0.00 33.06 3.06
469 470 5.941788 ACCCCAAGAATGAATAGTACATCC 58.058 41.667 0.00 0.00 0.00 3.51
470 471 5.431731 ACCCCAAGAATGAATAGTACATCCA 59.568 40.000 0.00 0.00 0.00 3.41
471 472 5.765182 CCCCAAGAATGAATAGTACATCCAC 59.235 44.000 0.00 0.00 0.00 4.02
472 473 6.356556 CCCAAGAATGAATAGTACATCCACA 58.643 40.000 0.00 0.00 0.00 4.17
473 474 7.000472 CCCAAGAATGAATAGTACATCCACAT 59.000 38.462 0.00 0.00 0.00 3.21
474 475 7.173907 CCCAAGAATGAATAGTACATCCACATC 59.826 40.741 0.00 0.00 0.00 3.06
475 476 7.173907 CCAAGAATGAATAGTACATCCACATCC 59.826 40.741 0.00 0.00 0.00 3.51
476 477 6.459066 AGAATGAATAGTACATCCACATCCG 58.541 40.000 0.00 0.00 0.00 4.18
477 478 3.990092 TGAATAGTACATCCACATCCGC 58.010 45.455 0.00 0.00 0.00 5.54
478 479 3.244078 TGAATAGTACATCCACATCCGCC 60.244 47.826 0.00 0.00 0.00 6.13
479 480 2.082140 TAGTACATCCACATCCGCCT 57.918 50.000 0.00 0.00 0.00 5.52
480 481 0.753262 AGTACATCCACATCCGCCTC 59.247 55.000 0.00 0.00 0.00 4.70
481 482 0.753262 GTACATCCACATCCGCCTCT 59.247 55.000 0.00 0.00 0.00 3.69
482 483 1.961394 GTACATCCACATCCGCCTCTA 59.039 52.381 0.00 0.00 0.00 2.43
483 484 0.753262 ACATCCACATCCGCCTCTAC 59.247 55.000 0.00 0.00 0.00 2.59
484 485 0.034059 CATCCACATCCGCCTCTACC 59.966 60.000 0.00 0.00 0.00 3.18
485 486 1.122019 ATCCACATCCGCCTCTACCC 61.122 60.000 0.00 0.00 0.00 3.69
486 487 2.417516 CACATCCGCCTCTACCCG 59.582 66.667 0.00 0.00 0.00 5.28
487 488 2.043248 ACATCCGCCTCTACCCGT 60.043 61.111 0.00 0.00 0.00 5.28
488 489 2.125961 ACATCCGCCTCTACCCGTC 61.126 63.158 0.00 0.00 0.00 4.79
489 490 2.905880 ATCCGCCTCTACCCGTCG 60.906 66.667 0.00 0.00 0.00 5.12
493 494 4.125695 GCCTCTACCCGTCGCGTT 62.126 66.667 5.77 0.00 0.00 4.84
494 495 2.202570 CCTCTACCCGTCGCGTTG 60.203 66.667 5.77 0.00 0.00 4.10
495 496 2.564975 CTCTACCCGTCGCGTTGT 59.435 61.111 5.77 1.76 0.00 3.32
496 497 1.513586 CTCTACCCGTCGCGTTGTC 60.514 63.158 5.77 0.00 0.00 3.18
497 498 2.505557 CTACCCGTCGCGTTGTCC 60.506 66.667 5.77 0.00 0.00 4.02
498 499 3.271706 CTACCCGTCGCGTTGTCCA 62.272 63.158 5.77 0.00 0.00 4.02
499 500 2.552585 CTACCCGTCGCGTTGTCCAT 62.553 60.000 5.77 0.00 0.00 3.41
500 501 2.546645 TACCCGTCGCGTTGTCCATC 62.547 60.000 5.77 0.00 0.00 3.51
501 502 3.541831 CCGTCGCGTTGTCCATCG 61.542 66.667 5.77 0.00 0.00 3.84
502 503 3.541831 CGTCGCGTTGTCCATCGG 61.542 66.667 5.77 0.00 0.00 4.18
503 504 3.849953 GTCGCGTTGTCCATCGGC 61.850 66.667 5.77 0.00 0.00 5.54
526 527 0.040958 CGGCAATCGCTGGATTTAGC 60.041 55.000 0.00 0.00 40.90 3.09
527 528 1.312815 GGCAATCGCTGGATTTAGCT 58.687 50.000 0.00 0.00 40.90 3.32
528 529 1.002033 GGCAATCGCTGGATTTAGCTG 60.002 52.381 0.00 0.00 40.90 4.24
529 530 1.598924 GCAATCGCTGGATTTAGCTGC 60.599 52.381 0.00 0.00 40.90 5.25
530 531 1.002033 CAATCGCTGGATTTAGCTGCC 60.002 52.381 0.00 0.00 40.90 4.85
531 532 0.181114 ATCGCTGGATTTAGCTGCCA 59.819 50.000 0.00 0.00 41.51 4.92
532 533 0.181114 TCGCTGGATTTAGCTGCCAT 59.819 50.000 0.00 0.00 41.51 4.40
533 534 0.590195 CGCTGGATTTAGCTGCCATC 59.410 55.000 0.00 0.00 41.51 3.51
534 535 1.683943 GCTGGATTTAGCTGCCATCA 58.316 50.000 0.00 0.00 40.52 3.07
535 536 1.336125 GCTGGATTTAGCTGCCATCAC 59.664 52.381 0.00 0.00 40.52 3.06
536 537 2.928334 CTGGATTTAGCTGCCATCACT 58.072 47.619 0.00 0.00 0.00 3.41
537 538 2.877168 CTGGATTTAGCTGCCATCACTC 59.123 50.000 0.00 0.00 0.00 3.51
538 539 2.507058 TGGATTTAGCTGCCATCACTCT 59.493 45.455 0.00 0.00 0.00 3.24
539 540 3.137533 GGATTTAGCTGCCATCACTCTC 58.862 50.000 0.00 0.00 0.00 3.20
540 541 2.698855 TTTAGCTGCCATCACTCTCC 57.301 50.000 0.00 0.00 0.00 3.71
541 542 0.833287 TTAGCTGCCATCACTCTCCC 59.167 55.000 0.00 0.00 0.00 4.30
542 543 0.031716 TAGCTGCCATCACTCTCCCT 60.032 55.000 0.00 0.00 0.00 4.20
543 544 1.145819 GCTGCCATCACTCTCCCTC 59.854 63.158 0.00 0.00 0.00 4.30
544 545 1.440893 CTGCCATCACTCTCCCTCG 59.559 63.158 0.00 0.00 0.00 4.63
545 546 2.107953 GCCATCACTCTCCCTCGC 59.892 66.667 0.00 0.00 0.00 5.03
546 547 2.415010 CCATCACTCTCCCTCGCG 59.585 66.667 0.00 0.00 0.00 5.87
547 548 2.279120 CATCACTCTCCCTCGCGC 60.279 66.667 0.00 0.00 0.00 6.86
548 549 2.441164 ATCACTCTCCCTCGCGCT 60.441 61.111 5.56 0.00 0.00 5.92
549 550 2.055042 ATCACTCTCCCTCGCGCTT 61.055 57.895 5.56 0.00 0.00 4.68
550 551 2.290122 ATCACTCTCCCTCGCGCTTG 62.290 60.000 5.56 0.00 0.00 4.01
551 552 3.764466 ACTCTCCCTCGCGCTTGG 61.764 66.667 5.56 7.24 0.00 3.61
552 553 3.764466 CTCTCCCTCGCGCTTGGT 61.764 66.667 5.56 0.00 0.00 3.67
553 554 3.708220 CTCTCCCTCGCGCTTGGTC 62.708 68.421 5.56 0.00 0.00 4.02
558 559 4.421479 CTCGCGCTTGGTCGGTCT 62.421 66.667 5.56 0.00 0.00 3.85
559 560 4.717629 TCGCGCTTGGTCGGTCTG 62.718 66.667 5.56 0.00 0.00 3.51
562 563 3.114616 CGCTTGGTCGGTCTGCAG 61.115 66.667 7.63 7.63 0.00 4.41
563 564 3.426568 GCTTGGTCGGTCTGCAGC 61.427 66.667 9.47 4.04 0.00 5.25
564 565 2.031012 CTTGGTCGGTCTGCAGCA 59.969 61.111 9.47 0.00 0.00 4.41
565 566 1.597854 CTTGGTCGGTCTGCAGCAA 60.598 57.895 9.47 5.42 0.00 3.91
566 567 1.153066 TTGGTCGGTCTGCAGCAAA 60.153 52.632 9.47 0.00 0.00 3.68
567 568 1.444119 TTGGTCGGTCTGCAGCAAAC 61.444 55.000 9.47 1.57 0.00 2.93
568 569 2.617274 GGTCGGTCTGCAGCAAACC 61.617 63.158 7.97 7.97 0.00 3.27
569 570 2.281484 TCGGTCTGCAGCAAACCC 60.281 61.111 12.58 3.57 0.00 4.11
570 571 2.281761 CGGTCTGCAGCAAACCCT 60.282 61.111 12.58 0.00 0.00 4.34
571 572 1.898574 CGGTCTGCAGCAAACCCTT 60.899 57.895 12.58 0.00 0.00 3.95
572 573 1.455383 CGGTCTGCAGCAAACCCTTT 61.455 55.000 12.58 0.00 0.00 3.11
573 574 0.032540 GGTCTGCAGCAAACCCTTTG 59.967 55.000 6.63 0.00 43.44 2.77
574 575 0.746659 GTCTGCAGCAAACCCTTTGT 59.253 50.000 9.47 0.00 42.56 2.83
575 576 1.136891 GTCTGCAGCAAACCCTTTGTT 59.863 47.619 9.47 0.00 42.56 2.83
578 579 3.756739 CAGCAAACCCTTTGTTGCA 57.243 47.368 10.65 0.00 43.18 4.08
579 580 1.574134 CAGCAAACCCTTTGTTGCAG 58.426 50.000 10.65 0.00 43.18 4.41
580 581 0.179076 AGCAAACCCTTTGTTGCAGC 60.179 50.000 10.65 0.00 42.56 5.25
581 582 1.159713 GCAAACCCTTTGTTGCAGCC 61.160 55.000 0.00 0.00 42.56 4.85
582 583 0.875474 CAAACCCTTTGTTGCAGCCG 60.875 55.000 0.00 0.00 37.23 5.52
583 584 1.040339 AAACCCTTTGTTGCAGCCGA 61.040 50.000 0.00 0.00 37.23 5.54
584 585 1.455383 AACCCTTTGTTGCAGCCGAG 61.455 55.000 0.00 0.00 35.31 4.63
585 586 2.256461 CCTTTGTTGCAGCCGAGC 59.744 61.111 0.00 0.00 0.00 5.03
586 587 2.256461 CTTTGTTGCAGCCGAGCC 59.744 61.111 0.00 0.00 0.00 4.70
587 588 2.518112 TTTGTTGCAGCCGAGCCA 60.518 55.556 0.00 0.00 0.00 4.75
588 589 2.467946 CTTTGTTGCAGCCGAGCCAG 62.468 60.000 0.00 0.00 0.00 4.85
589 590 2.956799 TTTGTTGCAGCCGAGCCAGA 62.957 55.000 0.00 0.00 0.00 3.86
590 591 2.437359 GTTGCAGCCGAGCCAGAT 60.437 61.111 0.00 0.00 0.00 2.90
591 592 2.437180 TTGCAGCCGAGCCAGATG 60.437 61.111 0.00 0.00 0.00 2.90
592 593 2.958281 TTGCAGCCGAGCCAGATGA 61.958 57.895 0.00 0.00 0.00 2.92
593 594 2.124983 GCAGCCGAGCCAGATGAA 60.125 61.111 0.00 0.00 0.00 2.57
594 595 1.746615 GCAGCCGAGCCAGATGAAA 60.747 57.895 0.00 0.00 0.00 2.69
595 596 1.308069 GCAGCCGAGCCAGATGAAAA 61.308 55.000 0.00 0.00 0.00 2.29
596 597 1.167851 CAGCCGAGCCAGATGAAAAA 58.832 50.000 0.00 0.00 0.00 1.94
620 621 9.853555 AAAAGGTCCAAATTGAAAATTTTGAAC 57.146 25.926 8.47 0.15 35.34 3.18
621 622 8.806429 AAGGTCCAAATTGAAAATTTTGAACT 57.194 26.923 8.47 9.93 33.73 3.01
622 623 8.212317 AGGTCCAAATTGAAAATTTTGAACTG 57.788 30.769 8.47 7.48 31.92 3.16
623 624 7.282901 AGGTCCAAATTGAAAATTTTGAACTGG 59.717 33.333 19.05 19.05 31.92 4.00
624 625 7.416817 GTCCAAATTGAAAATTTTGAACTGGG 58.583 34.615 22.15 13.35 35.34 4.45
625 626 7.066887 GTCCAAATTGAAAATTTTGAACTGGGT 59.933 33.333 22.15 1.78 35.34 4.51
626 627 8.267894 TCCAAATTGAAAATTTTGAACTGGGTA 58.732 29.630 22.15 9.85 35.34 3.69
627 628 8.558700 CCAAATTGAAAATTTTGAACTGGGTAG 58.441 33.333 18.07 3.12 35.34 3.18
628 629 9.323985 CAAATTGAAAATTTTGAACTGGGTAGA 57.676 29.630 8.47 0.00 35.34 2.59
629 630 9.546428 AAATTGAAAATTTTGAACTGGGTAGAG 57.454 29.630 8.47 0.00 0.00 2.43
630 631 7.889873 TTGAAAATTTTGAACTGGGTAGAGA 57.110 32.000 8.47 0.00 0.00 3.10
631 632 8.477419 TTGAAAATTTTGAACTGGGTAGAGAT 57.523 30.769 8.47 0.00 0.00 2.75
632 633 8.477419 TGAAAATTTTGAACTGGGTAGAGATT 57.523 30.769 8.47 0.00 0.00 2.40
633 634 8.359642 TGAAAATTTTGAACTGGGTAGAGATTG 58.640 33.333 8.47 0.00 0.00 2.67
634 635 5.904362 ATTTTGAACTGGGTAGAGATTGC 57.096 39.130 0.00 0.00 0.00 3.56
635 636 4.640771 TTTGAACTGGGTAGAGATTGCT 57.359 40.909 0.00 0.00 0.00 3.91
636 637 3.895232 TGAACTGGGTAGAGATTGCTC 57.105 47.619 0.00 0.00 41.62 4.26
637 638 2.166459 TGAACTGGGTAGAGATTGCTCG 59.834 50.000 0.00 0.00 45.98 5.03
638 639 1.853963 ACTGGGTAGAGATTGCTCGT 58.146 50.000 0.00 0.00 45.98 4.18
644 645 2.480416 GGTAGAGATTGCTCGTCCACAG 60.480 54.545 0.00 0.00 45.98 3.66
647 648 0.534412 AGATTGCTCGTCCACAGAGG 59.466 55.000 0.00 0.00 36.31 3.69
653 654 2.603473 CGTCCACAGAGGGGGTCA 60.603 66.667 0.00 0.00 38.24 4.02
673 674 6.161381 GGTCAAGACATGCAGAAAAATCAAT 58.839 36.000 2.29 0.00 0.00 2.57
674 675 6.647895 GGTCAAGACATGCAGAAAAATCAATT 59.352 34.615 2.29 0.00 0.00 2.32
677 678 6.105397 AGACATGCAGAAAAATCAATTGGT 57.895 33.333 5.42 0.00 0.00 3.67
752 753 1.019673 GCATGCGAAGACACATCCAT 58.980 50.000 0.00 0.00 0.00 3.41
767 768 5.362717 ACACATCCATCGTCTATTTCAGGTA 59.637 40.000 0.00 0.00 0.00 3.08
784 785 2.760650 AGGTATGTCGTTGATCAGCTCA 59.239 45.455 8.01 7.27 0.00 4.26
844 861 2.639286 CACACAAACCGAGCAGCC 59.361 61.111 0.00 0.00 0.00 4.85
860 877 2.514592 CCTCCGCAACCATCGCAT 60.515 61.111 0.00 0.00 0.00 4.73
962 979 4.783621 GCATCTGTGCCGCCTCCA 62.784 66.667 0.00 0.00 45.76 3.86
986 1003 1.591594 CACCCGCCGTGCATAGTAG 60.592 63.158 0.00 0.00 35.18 2.57
1302 1367 3.529533 AGTCTGACATCTAAGTGCATGC 58.470 45.455 11.82 11.82 0.00 4.06
1321 1389 2.294233 TGCTTGTGTCTTCTTGCATTCC 59.706 45.455 0.00 0.00 0.00 3.01
1350 1418 2.673862 TGTGTAGTTGTGTTGTTGTCCG 59.326 45.455 0.00 0.00 0.00 4.79
1363 1431 3.146066 TGTTGTCCGGAAGAAAGAATGG 58.854 45.455 5.23 0.00 0.00 3.16
1410 1488 2.857104 GCGTGTCACGATAATCGATCCA 60.857 50.000 28.83 0.00 46.05 3.41
1425 1503 1.339610 GATCCACGCTAGCTGATGACT 59.660 52.381 13.93 0.00 0.00 3.41
1460 1545 3.770388 TGTCCCTGTTAATATCGTGGACA 59.230 43.478 4.45 4.45 46.15 4.02
1473 1558 1.734465 CGTGGACATTCAGGAAGAAGC 59.266 52.381 0.00 0.00 40.15 3.86
1479 1564 5.663106 TGGACATTCAGGAAGAAGCTATAGT 59.337 40.000 0.84 0.00 40.15 2.12
1529 1614 3.421844 GTCTTCCTATTGTTGGCCTTGT 58.578 45.455 3.32 0.00 0.00 3.16
1547 1632 3.593442 TGTGATTTTTGGAGTGGGAGT 57.407 42.857 0.00 0.00 0.00 3.85
1748 1835 6.987223 TGAATACGCGCTTAACGTTATTTTA 58.013 32.000 9.18 0.00 41.93 1.52
1945 2033 7.093945 ACAATTTCCGTAAACATAAGGAGCATT 60.094 33.333 0.00 0.00 33.89 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.323985 CCAAAACCAGAATTTTTCACAATTAGA 57.676 29.630 0.00 0.00 29.17 2.10
6 7 9.323985 TCCAAAACCAGAATTTTTCACAATTAG 57.676 29.630 0.00 0.00 29.17 1.73
7 8 9.323985 CTCCAAAACCAGAATTTTTCACAATTA 57.676 29.630 0.00 0.00 29.17 1.40
8 9 8.046107 TCTCCAAAACCAGAATTTTTCACAATT 58.954 29.630 0.00 0.00 29.17 2.32
9 10 7.563906 TCTCCAAAACCAGAATTTTTCACAAT 58.436 30.769 0.00 0.00 29.17 2.71
10 11 6.940739 TCTCCAAAACCAGAATTTTTCACAA 58.059 32.000 0.00 0.00 29.17 3.33
11 12 6.537453 TCTCCAAAACCAGAATTTTTCACA 57.463 33.333 0.00 0.00 29.17 3.58
12 13 7.326063 CGTATCTCCAAAACCAGAATTTTTCAC 59.674 37.037 0.00 0.00 29.17 3.18
13 14 7.367285 CGTATCTCCAAAACCAGAATTTTTCA 58.633 34.615 0.00 0.00 29.17 2.69
14 15 6.308041 GCGTATCTCCAAAACCAGAATTTTTC 59.692 38.462 0.00 0.00 29.17 2.29
15 16 6.156519 GCGTATCTCCAAAACCAGAATTTTT 58.843 36.000 0.00 0.00 29.17 1.94
16 17 5.336451 GGCGTATCTCCAAAACCAGAATTTT 60.336 40.000 0.00 0.00 31.87 1.82
17 18 4.157840 GGCGTATCTCCAAAACCAGAATTT 59.842 41.667 0.00 0.00 0.00 1.82
18 19 3.694566 GGCGTATCTCCAAAACCAGAATT 59.305 43.478 0.00 0.00 0.00 2.17
19 20 3.279434 GGCGTATCTCCAAAACCAGAAT 58.721 45.455 0.00 0.00 0.00 2.40
20 21 2.617021 GGGCGTATCTCCAAAACCAGAA 60.617 50.000 0.00 0.00 0.00 3.02
21 22 1.065709 GGGCGTATCTCCAAAACCAGA 60.066 52.381 0.00 0.00 0.00 3.86
22 23 1.065418 AGGGCGTATCTCCAAAACCAG 60.065 52.381 0.00 0.00 0.00 4.00
23 24 0.988832 AGGGCGTATCTCCAAAACCA 59.011 50.000 0.00 0.00 0.00 3.67
24 25 2.124277 AAGGGCGTATCTCCAAAACC 57.876 50.000 0.00 0.00 0.00 3.27
25 26 5.632244 TTTAAAGGGCGTATCTCCAAAAC 57.368 39.130 0.00 0.00 0.00 2.43
26 27 6.209788 ACAATTTAAAGGGCGTATCTCCAAAA 59.790 34.615 0.00 0.00 0.00 2.44
27 28 5.712917 ACAATTTAAAGGGCGTATCTCCAAA 59.287 36.000 0.00 0.00 0.00 3.28
28 29 5.124776 CACAATTTAAAGGGCGTATCTCCAA 59.875 40.000 0.00 0.00 0.00 3.53
29 30 4.638421 CACAATTTAAAGGGCGTATCTCCA 59.362 41.667 0.00 0.00 0.00 3.86
30 31 4.879545 TCACAATTTAAAGGGCGTATCTCC 59.120 41.667 0.00 0.00 0.00 3.71
31 32 6.260050 TCATCACAATTTAAAGGGCGTATCTC 59.740 38.462 0.00 0.00 0.00 2.75
32 33 6.119536 TCATCACAATTTAAAGGGCGTATCT 58.880 36.000 0.00 0.00 0.00 1.98
33 34 6.371809 TCATCACAATTTAAAGGGCGTATC 57.628 37.500 0.00 0.00 0.00 2.24
34 35 6.183360 CCTTCATCACAATTTAAAGGGCGTAT 60.183 38.462 0.00 0.00 31.63 3.06
35 36 5.124776 CCTTCATCACAATTTAAAGGGCGTA 59.875 40.000 0.00 0.00 31.63 4.42
36 37 4.082245 CCTTCATCACAATTTAAAGGGCGT 60.082 41.667 0.00 0.00 31.63 5.68
37 38 4.157656 TCCTTCATCACAATTTAAAGGGCG 59.842 41.667 0.00 0.00 35.16 6.13
38 39 5.659440 TCCTTCATCACAATTTAAAGGGC 57.341 39.130 0.00 0.00 35.16 5.19
39 40 7.232118 ACTTCCTTCATCACAATTTAAAGGG 57.768 36.000 0.00 0.00 35.16 3.95
40 41 9.793252 CATACTTCCTTCATCACAATTTAAAGG 57.207 33.333 0.00 0.00 35.63 3.11
45 46 9.911788 AGTATCATACTTCCTTCATCACAATTT 57.088 29.630 0.00 0.00 34.86 1.82
46 47 9.553064 GAGTATCATACTTCCTTCATCACAATT 57.447 33.333 0.00 0.00 39.59 2.32
47 48 8.708378 TGAGTATCATACTTCCTTCATCACAAT 58.292 33.333 0.00 0.00 42.56 2.71
48 49 8.078060 TGAGTATCATACTTCCTTCATCACAA 57.922 34.615 0.00 0.00 42.56 3.33
49 50 7.660030 TGAGTATCATACTTCCTTCATCACA 57.340 36.000 0.00 0.00 42.56 3.58
66 67 5.971763 TGAAGAAAGAGAGGCTTGAGTATC 58.028 41.667 0.00 0.00 36.80 2.24
67 68 6.558488 ATGAAGAAAGAGAGGCTTGAGTAT 57.442 37.500 0.00 0.00 36.80 2.12
68 69 6.365970 AATGAAGAAAGAGAGGCTTGAGTA 57.634 37.500 0.00 0.00 36.80 2.59
69 70 4.906747 ATGAAGAAAGAGAGGCTTGAGT 57.093 40.909 0.00 0.00 36.80 3.41
70 71 7.678947 TTAAATGAAGAAAGAGAGGCTTGAG 57.321 36.000 0.00 0.00 36.80 3.02
71 72 8.641498 AATTAAATGAAGAAAGAGAGGCTTGA 57.359 30.769 0.00 0.00 36.80 3.02
72 73 8.738106 AGAATTAAATGAAGAAAGAGAGGCTTG 58.262 33.333 0.00 0.00 36.80 4.01
73 74 8.876303 AGAATTAAATGAAGAAAGAGAGGCTT 57.124 30.769 0.00 0.00 38.88 4.35
93 94 7.972277 GCAAGTTTGATGATGTGACATAGAATT 59.028 33.333 0.00 0.00 0.00 2.17
94 95 7.338703 AGCAAGTTTGATGATGTGACATAGAAT 59.661 33.333 0.00 0.00 0.00 2.40
95 96 6.656270 AGCAAGTTTGATGATGTGACATAGAA 59.344 34.615 0.00 0.00 0.00 2.10
96 97 6.175471 AGCAAGTTTGATGATGTGACATAGA 58.825 36.000 0.00 0.00 0.00 1.98
97 98 6.432607 AGCAAGTTTGATGATGTGACATAG 57.567 37.500 0.00 0.00 0.00 2.23
98 99 6.822667 AAGCAAGTTTGATGATGTGACATA 57.177 33.333 0.00 0.00 0.00 2.29
99 100 5.717078 AAGCAAGTTTGATGATGTGACAT 57.283 34.783 0.00 0.00 0.00 3.06
100 101 5.764686 ACTAAGCAAGTTTGATGATGTGACA 59.235 36.000 0.00 0.00 33.35 3.58
101 102 6.246420 ACTAAGCAAGTTTGATGATGTGAC 57.754 37.500 0.00 0.00 33.35 3.67
102 103 6.486320 TCAACTAAGCAAGTTTGATGATGTGA 59.514 34.615 1.98 0.00 46.61 3.58
103 104 6.580041 GTCAACTAAGCAAGTTTGATGATGTG 59.420 38.462 1.98 0.00 46.61 3.21
104 105 6.262944 TGTCAACTAAGCAAGTTTGATGATGT 59.737 34.615 1.98 0.00 46.61 3.06
105 106 6.671190 TGTCAACTAAGCAAGTTTGATGATG 58.329 36.000 1.98 0.00 46.61 3.07
106 107 6.882610 TGTCAACTAAGCAAGTTTGATGAT 57.117 33.333 1.98 0.00 46.61 2.45
107 108 6.262944 ACATGTCAACTAAGCAAGTTTGATGA 59.737 34.615 14.89 5.17 46.61 2.92
108 109 6.441274 ACATGTCAACTAAGCAAGTTTGATG 58.559 36.000 0.00 7.17 46.61 3.07
109 110 6.639632 ACATGTCAACTAAGCAAGTTTGAT 57.360 33.333 0.00 0.00 46.61 2.57
110 111 7.443879 TCATACATGTCAACTAAGCAAGTTTGA 59.556 33.333 0.00 2.19 46.61 2.69
111 112 7.584108 TCATACATGTCAACTAAGCAAGTTTG 58.416 34.615 0.00 1.90 46.61 2.93
112 113 7.744087 TCATACATGTCAACTAAGCAAGTTT 57.256 32.000 0.00 0.00 46.61 2.66
114 115 8.260818 AGTATCATACATGTCAACTAAGCAAGT 58.739 33.333 0.00 0.00 41.49 3.16
115 116 8.654230 AGTATCATACATGTCAACTAAGCAAG 57.346 34.615 0.00 0.00 0.00 4.01
116 117 9.529325 GTAGTATCATACATGTCAACTAAGCAA 57.471 33.333 0.00 0.00 0.00 3.91
117 118 8.141909 GGTAGTATCATACATGTCAACTAAGCA 58.858 37.037 0.00 0.00 0.00 3.91
118 119 8.361139 AGGTAGTATCATACATGTCAACTAAGC 58.639 37.037 0.00 0.00 0.00 3.09
122 123 9.588096 TCATAGGTAGTATCATACATGTCAACT 57.412 33.333 0.00 2.78 0.00 3.16
129 130 9.869667 GGGAGTATCATAGGTAGTATCATACAT 57.130 37.037 0.00 0.00 36.25 2.29
130 131 8.842764 TGGGAGTATCATAGGTAGTATCATACA 58.157 37.037 0.00 0.00 36.25 2.29
131 132 9.869667 ATGGGAGTATCATAGGTAGTATCATAC 57.130 37.037 0.00 0.00 36.25 2.39
134 135 9.696572 GTAATGGGAGTATCATAGGTAGTATCA 57.303 37.037 0.00 0.00 36.25 2.15
135 136 8.838365 CGTAATGGGAGTATCATAGGTAGTATC 58.162 40.741 0.00 0.00 36.25 2.24
136 137 7.778853 CCGTAATGGGAGTATCATAGGTAGTAT 59.221 40.741 0.00 0.00 36.25 2.12
137 138 7.114754 CCGTAATGGGAGTATCATAGGTAGTA 58.885 42.308 0.00 0.00 36.25 1.82
138 139 5.950549 CCGTAATGGGAGTATCATAGGTAGT 59.049 44.000 0.00 0.00 36.25 2.73
139 140 6.452494 CCGTAATGGGAGTATCATAGGTAG 57.548 45.833 0.00 0.00 36.25 3.18
154 155 1.524621 CTGAGGCTGCCCGTAATGG 60.525 63.158 16.57 0.00 35.76 3.16
155 156 1.524621 CCTGAGGCTGCCCGTAATG 60.525 63.158 16.57 0.00 35.76 1.90
156 157 2.746375 CCCTGAGGCTGCCCGTAAT 61.746 63.158 16.57 0.00 35.76 1.89
157 158 3.399181 CCCTGAGGCTGCCCGTAA 61.399 66.667 16.57 0.00 35.76 3.18
188 189 2.802787 AAGCAGAATCGTCCCGATAG 57.197 50.000 0.00 0.00 46.30 2.08
189 190 4.866508 ATAAAGCAGAATCGTCCCGATA 57.133 40.909 0.00 0.00 46.30 2.92
191 192 3.536956 AATAAAGCAGAATCGTCCCGA 57.463 42.857 0.00 0.00 41.13 5.14
192 193 4.209288 CAGTAATAAAGCAGAATCGTCCCG 59.791 45.833 0.00 0.00 0.00 5.14
193 194 4.024809 GCAGTAATAAAGCAGAATCGTCCC 60.025 45.833 0.00 0.00 0.00 4.46
194 195 4.570772 TGCAGTAATAAAGCAGAATCGTCC 59.429 41.667 0.00 0.00 33.75 4.79
195 196 5.718649 TGCAGTAATAAAGCAGAATCGTC 57.281 39.130 0.00 0.00 33.75 4.20
196 197 6.761242 TGTATGCAGTAATAAAGCAGAATCGT 59.239 34.615 0.00 0.00 42.14 3.73
197 198 7.065894 GTGTATGCAGTAATAAAGCAGAATCG 58.934 38.462 0.00 0.00 42.14 3.34
198 199 7.012327 TGGTGTATGCAGTAATAAAGCAGAATC 59.988 37.037 0.00 0.00 42.14 2.52
199 200 6.828273 TGGTGTATGCAGTAATAAAGCAGAAT 59.172 34.615 0.00 0.00 42.14 2.40
200 201 6.093495 GTGGTGTATGCAGTAATAAAGCAGAA 59.907 38.462 0.00 0.00 42.14 3.02
201 202 5.584649 GTGGTGTATGCAGTAATAAAGCAGA 59.415 40.000 0.00 0.00 42.14 4.26
202 203 5.502382 CGTGGTGTATGCAGTAATAAAGCAG 60.502 44.000 0.00 0.00 42.14 4.24
203 204 4.331443 CGTGGTGTATGCAGTAATAAAGCA 59.669 41.667 0.00 0.00 43.14 3.91
204 205 4.331717 ACGTGGTGTATGCAGTAATAAAGC 59.668 41.667 0.00 0.00 0.00 3.51
205 206 6.417191 AACGTGGTGTATGCAGTAATAAAG 57.583 37.500 0.00 0.00 0.00 1.85
206 207 6.804770 AAACGTGGTGTATGCAGTAATAAA 57.195 33.333 0.00 0.00 0.00 1.40
207 208 6.205076 ACAAAACGTGGTGTATGCAGTAATAA 59.795 34.615 2.68 0.00 0.00 1.40
208 209 5.701750 ACAAAACGTGGTGTATGCAGTAATA 59.298 36.000 2.68 0.00 0.00 0.98
209 210 4.517453 ACAAAACGTGGTGTATGCAGTAAT 59.483 37.500 2.68 0.00 0.00 1.89
210 211 3.878103 ACAAAACGTGGTGTATGCAGTAA 59.122 39.130 2.68 0.00 0.00 2.24
211 212 3.468770 ACAAAACGTGGTGTATGCAGTA 58.531 40.909 2.68 0.00 0.00 2.74
212 213 2.294074 ACAAAACGTGGTGTATGCAGT 58.706 42.857 2.68 0.00 0.00 4.40
213 214 3.347958 AACAAAACGTGGTGTATGCAG 57.652 42.857 4.92 0.00 0.00 4.41
214 215 3.784701 AAACAAAACGTGGTGTATGCA 57.215 38.095 4.92 0.00 0.00 3.96
215 216 5.915758 TGAATAAACAAAACGTGGTGTATGC 59.084 36.000 4.92 1.64 0.00 3.14
216 217 7.136119 ACTGAATAAACAAAACGTGGTGTATG 58.864 34.615 4.92 0.00 0.00 2.39
217 218 7.266922 ACTGAATAAACAAAACGTGGTGTAT 57.733 32.000 4.92 0.00 0.00 2.29
218 219 6.680874 ACTGAATAAACAAAACGTGGTGTA 57.319 33.333 4.92 0.00 0.00 2.90
219 220 5.570234 ACTGAATAAACAAAACGTGGTGT 57.430 34.783 0.00 0.00 0.00 4.16
220 221 8.568732 AATTACTGAATAAACAAAACGTGGTG 57.431 30.769 0.00 0.00 0.00 4.17
221 222 8.626526 AGAATTACTGAATAAACAAAACGTGGT 58.373 29.630 0.00 0.00 0.00 4.16
232 233 8.641155 CGTAACACGACAGAATTACTGAATAAA 58.359 33.333 10.61 0.00 45.98 1.40
233 234 7.274033 CCGTAACACGACAGAATTACTGAATAA 59.726 37.037 10.61 0.00 45.98 1.40
234 235 6.748658 CCGTAACACGACAGAATTACTGAATA 59.251 38.462 10.61 0.00 45.98 1.75
235 236 5.575606 CCGTAACACGACAGAATTACTGAAT 59.424 40.000 10.61 0.00 45.98 2.57
236 237 4.919168 CCGTAACACGACAGAATTACTGAA 59.081 41.667 10.61 0.00 45.98 3.02
237 238 4.022935 ACCGTAACACGACAGAATTACTGA 60.023 41.667 10.61 0.00 45.98 3.41
238 239 4.232221 ACCGTAACACGACAGAATTACTG 58.768 43.478 0.00 0.00 46.05 2.74
239 240 4.510038 ACCGTAACACGACAGAATTACT 57.490 40.909 0.00 0.00 46.05 2.24
240 241 6.689178 TTAACCGTAACACGACAGAATTAC 57.311 37.500 0.00 0.00 46.05 1.89
241 242 6.251163 CGATTAACCGTAACACGACAGAATTA 59.749 38.462 0.00 0.00 46.05 1.40
242 243 5.061311 CGATTAACCGTAACACGACAGAATT 59.939 40.000 0.00 0.00 46.05 2.17
243 244 4.560035 CGATTAACCGTAACACGACAGAAT 59.440 41.667 0.00 0.00 46.05 2.40
244 245 3.913763 CGATTAACCGTAACACGACAGAA 59.086 43.478 0.00 0.00 46.05 3.02
245 246 3.058293 ACGATTAACCGTAACACGACAGA 60.058 43.478 0.00 0.00 46.05 3.41
246 247 3.236816 ACGATTAACCGTAACACGACAG 58.763 45.455 0.00 0.00 46.05 3.51
247 248 3.233578 GACGATTAACCGTAACACGACA 58.766 45.455 0.00 0.00 46.05 4.35
248 249 2.273718 CGACGATTAACCGTAACACGAC 59.726 50.000 0.00 0.00 46.05 4.34
249 250 2.158645 TCGACGATTAACCGTAACACGA 59.841 45.455 0.00 0.00 46.05 4.35
250 251 2.273718 GTCGACGATTAACCGTAACACG 59.726 50.000 0.00 0.00 43.49 4.49
251 252 2.594214 GGTCGACGATTAACCGTAACAC 59.406 50.000 9.92 0.00 43.49 3.32
252 253 2.227626 TGGTCGACGATTAACCGTAACA 59.772 45.455 9.92 0.00 43.49 2.41
253 254 2.862512 TGGTCGACGATTAACCGTAAC 58.137 47.619 9.92 0.00 43.49 2.50
254 255 3.781079 ATGGTCGACGATTAACCGTAA 57.219 42.857 9.92 0.00 43.49 3.18
255 256 4.261155 CCTTATGGTCGACGATTAACCGTA 60.261 45.833 18.49 1.72 43.49 4.02
256 257 3.489738 CCTTATGGTCGACGATTAACCGT 60.490 47.826 18.49 0.00 46.43 4.83
257 258 3.047796 CCTTATGGTCGACGATTAACCG 58.952 50.000 18.49 0.00 35.76 4.44
258 259 3.068590 TCCCTTATGGTCGACGATTAACC 59.931 47.826 18.49 0.00 34.77 2.85
259 260 4.202090 ACTCCCTTATGGTCGACGATTAAC 60.202 45.833 18.49 0.00 34.77 2.01
260 261 3.956199 ACTCCCTTATGGTCGACGATTAA 59.044 43.478 18.49 10.18 34.77 1.40
261 262 3.559069 ACTCCCTTATGGTCGACGATTA 58.441 45.455 18.49 8.69 34.77 1.75
262 263 2.385803 ACTCCCTTATGGTCGACGATT 58.614 47.619 18.49 3.63 34.77 3.34
263 264 2.068834 ACTCCCTTATGGTCGACGAT 57.931 50.000 17.44 17.44 34.77 3.73
264 265 2.292267 GTACTCCCTTATGGTCGACGA 58.708 52.381 9.92 5.99 34.77 4.20
265 266 1.336125 GGTACTCCCTTATGGTCGACG 59.664 57.143 9.92 0.00 34.77 5.12
266 267 2.361438 CTGGTACTCCCTTATGGTCGAC 59.639 54.545 7.13 7.13 34.77 4.20
267 268 2.024655 ACTGGTACTCCCTTATGGTCGA 60.025 50.000 0.00 0.00 34.77 4.20
268 269 2.385803 ACTGGTACTCCCTTATGGTCG 58.614 52.381 0.00 0.00 34.77 4.79
269 270 4.838904 AAACTGGTACTCCCTTATGGTC 57.161 45.455 0.00 0.00 34.77 4.02
270 271 6.903340 AATAAACTGGTACTCCCTTATGGT 57.097 37.500 0.00 0.00 34.77 3.55
271 272 8.030913 ACTAATAAACTGGTACTCCCTTATGG 57.969 38.462 0.00 0.00 0.00 2.74
272 273 8.148999 GGACTAATAAACTGGTACTCCCTTATG 58.851 40.741 0.00 0.00 0.00 1.90
273 274 8.072480 AGGACTAATAAACTGGTACTCCCTTAT 58.928 37.037 0.00 0.00 0.00 1.73
274 275 7.425003 AGGACTAATAAACTGGTACTCCCTTA 58.575 38.462 0.00 0.00 0.00 2.69
275 276 6.269974 AGGACTAATAAACTGGTACTCCCTT 58.730 40.000 0.00 0.00 0.00 3.95
276 277 5.851418 AGGACTAATAAACTGGTACTCCCT 58.149 41.667 0.00 0.00 0.00 4.20
277 278 6.159299 GAGGACTAATAAACTGGTACTCCC 57.841 45.833 0.00 0.00 34.56 4.30
279 280 5.359292 ACGGAGGACTAATAAACTGGTACTC 59.641 44.000 0.00 0.00 38.52 2.59
280 281 5.267587 ACGGAGGACTAATAAACTGGTACT 58.732 41.667 0.00 0.00 0.00 2.73
281 282 5.588958 ACGGAGGACTAATAAACTGGTAC 57.411 43.478 0.00 0.00 0.00 3.34
282 283 6.211184 TCAAACGGAGGACTAATAAACTGGTA 59.789 38.462 0.00 0.00 0.00 3.25
283 284 5.012354 TCAAACGGAGGACTAATAAACTGGT 59.988 40.000 0.00 0.00 0.00 4.00
284 285 5.484715 TCAAACGGAGGACTAATAAACTGG 58.515 41.667 0.00 0.00 0.00 4.00
285 286 6.402226 GCTTCAAACGGAGGACTAATAAACTG 60.402 42.308 0.00 0.00 0.00 3.16
286 287 5.642491 GCTTCAAACGGAGGACTAATAAACT 59.358 40.000 0.00 0.00 0.00 2.66
287 288 5.642491 AGCTTCAAACGGAGGACTAATAAAC 59.358 40.000 0.00 0.00 0.00 2.01
288 289 5.801380 AGCTTCAAACGGAGGACTAATAAA 58.199 37.500 0.00 0.00 0.00 1.40
289 290 5.416271 AGCTTCAAACGGAGGACTAATAA 57.584 39.130 0.00 0.00 0.00 1.40
290 291 6.534475 TTAGCTTCAAACGGAGGACTAATA 57.466 37.500 0.00 0.00 0.00 0.98
291 292 3.983044 AGCTTCAAACGGAGGACTAAT 57.017 42.857 0.00 0.00 0.00 1.73
292 293 4.877378 TTAGCTTCAAACGGAGGACTAA 57.123 40.909 0.00 0.00 0.00 2.24
293 294 5.416271 AATTAGCTTCAAACGGAGGACTA 57.584 39.130 0.00 0.00 0.00 2.59
294 295 3.983044 ATTAGCTTCAAACGGAGGACT 57.017 42.857 0.00 0.00 0.00 3.85
295 296 5.176592 AGTAATTAGCTTCAAACGGAGGAC 58.823 41.667 0.00 0.00 0.00 3.85
296 297 5.416271 AGTAATTAGCTTCAAACGGAGGA 57.584 39.130 0.00 0.00 0.00 3.71
297 298 4.571176 GGAGTAATTAGCTTCAAACGGAGG 59.429 45.833 0.00 0.00 0.00 4.30
298 299 5.175859 TGGAGTAATTAGCTTCAAACGGAG 58.824 41.667 0.00 0.00 0.00 4.63
299 300 5.155278 TGGAGTAATTAGCTTCAAACGGA 57.845 39.130 0.00 0.00 0.00 4.69
300 301 4.935808 ACTGGAGTAATTAGCTTCAAACGG 59.064 41.667 0.00 0.00 0.00 4.44
301 302 7.772332 ATACTGGAGTAATTAGCTTCAAACG 57.228 36.000 0.00 0.00 33.76 3.60
351 352 9.145865 GCTCCTAGCTTAGCAACTTTAATATAG 57.854 37.037 7.07 0.00 38.45 1.31
352 353 8.095169 GGCTCCTAGCTTAGCAACTTTAATATA 58.905 37.037 7.07 0.00 41.99 0.86
353 354 6.937465 GGCTCCTAGCTTAGCAACTTTAATAT 59.063 38.462 7.07 0.00 41.99 1.28
354 355 6.289064 GGCTCCTAGCTTAGCAACTTTAATA 58.711 40.000 7.07 0.00 41.99 0.98
355 356 5.126779 GGCTCCTAGCTTAGCAACTTTAAT 58.873 41.667 7.07 0.00 41.99 1.40
356 357 4.514401 GGCTCCTAGCTTAGCAACTTTAA 58.486 43.478 7.07 0.00 41.99 1.52
357 358 3.118371 GGGCTCCTAGCTTAGCAACTTTA 60.118 47.826 7.07 0.00 41.99 1.85
358 359 2.356227 GGGCTCCTAGCTTAGCAACTTT 60.356 50.000 7.07 0.00 41.99 2.66
359 360 1.210722 GGGCTCCTAGCTTAGCAACTT 59.789 52.381 7.07 0.00 41.99 2.66
360 361 0.833949 GGGCTCCTAGCTTAGCAACT 59.166 55.000 7.07 0.00 41.99 3.16
361 362 0.179043 GGGGCTCCTAGCTTAGCAAC 60.179 60.000 7.07 8.49 41.99 4.17
362 363 1.345715 GGGGGCTCCTAGCTTAGCAA 61.346 60.000 0.52 0.00 41.99 3.91
363 364 1.766461 GGGGGCTCCTAGCTTAGCA 60.766 63.158 0.52 0.00 41.99 3.49
364 365 1.460497 AGGGGGCTCCTAGCTTAGC 60.460 63.158 2.53 0.00 45.98 3.09
395 396 5.122554 TGTCAACTTCGTGAAGCACTAAAAA 59.877 36.000 9.46 0.00 41.99 1.94
396 397 4.632251 TGTCAACTTCGTGAAGCACTAAAA 59.368 37.500 9.46 0.00 41.99 1.52
397 398 4.033587 GTGTCAACTTCGTGAAGCACTAAA 59.966 41.667 9.46 0.00 41.99 1.85
398 399 3.554324 GTGTCAACTTCGTGAAGCACTAA 59.446 43.478 9.46 0.00 41.99 2.24
399 400 3.120792 GTGTCAACTTCGTGAAGCACTA 58.879 45.455 9.46 0.00 41.99 2.74
400 401 1.933853 GTGTCAACTTCGTGAAGCACT 59.066 47.619 9.46 0.00 41.99 4.40
401 402 1.933853 AGTGTCAACTTCGTGAAGCAC 59.066 47.619 9.46 9.15 41.99 4.40
402 403 2.201732 GAGTGTCAACTTCGTGAAGCA 58.798 47.619 9.46 0.00 41.99 3.91
403 404 2.033662 GTGAGTGTCAACTTCGTGAAGC 60.034 50.000 9.46 0.00 41.99 3.86
404 405 3.000322 GTGTGAGTGTCAACTTCGTGAAG 60.000 47.826 8.04 8.04 43.79 3.02
405 406 2.927477 GTGTGAGTGTCAACTTCGTGAA 59.073 45.455 0.00 0.00 36.52 3.18
406 407 2.536365 GTGTGAGTGTCAACTTCGTGA 58.464 47.619 0.00 0.00 36.52 4.35
407 408 1.255342 CGTGTGAGTGTCAACTTCGTG 59.745 52.381 0.00 0.00 36.52 4.35
408 409 1.135199 ACGTGTGAGTGTCAACTTCGT 60.135 47.619 0.00 0.00 36.52 3.85
409 410 1.255342 CACGTGTGAGTGTCAACTTCG 59.745 52.381 7.58 0.00 36.52 3.79
410 411 2.281762 GTCACGTGTGAGTGTCAACTTC 59.718 50.000 16.51 0.00 40.75 3.01
411 412 2.268298 GTCACGTGTGAGTGTCAACTT 58.732 47.619 16.51 0.00 40.75 2.66
412 413 1.203758 TGTCACGTGTGAGTGTCAACT 59.796 47.619 16.51 0.00 40.75 3.16
413 414 1.588404 CTGTCACGTGTGAGTGTCAAC 59.412 52.381 16.51 3.29 40.75 3.18
414 415 1.921243 CTGTCACGTGTGAGTGTCAA 58.079 50.000 16.51 0.00 40.75 3.18
415 416 0.527600 GCTGTCACGTGTGAGTGTCA 60.528 55.000 16.51 0.00 40.75 3.58
416 417 0.527600 TGCTGTCACGTGTGAGTGTC 60.528 55.000 16.51 1.32 40.75 3.67
417 418 0.108377 TTGCTGTCACGTGTGAGTGT 60.108 50.000 16.51 0.00 40.75 3.55
418 419 1.070376 CATTGCTGTCACGTGTGAGTG 60.070 52.381 16.51 3.79 40.75 3.51
419 420 1.202521 TCATTGCTGTCACGTGTGAGT 60.203 47.619 16.51 0.00 40.75 3.41
420 421 1.501169 TCATTGCTGTCACGTGTGAG 58.499 50.000 16.51 13.20 40.75 3.51
421 422 1.946745 TTCATTGCTGTCACGTGTGA 58.053 45.000 16.51 7.07 37.24 3.58
422 423 2.223226 TGTTTCATTGCTGTCACGTGTG 60.223 45.455 16.51 4.50 0.00 3.82
423 424 2.013400 TGTTTCATTGCTGTCACGTGT 58.987 42.857 16.51 0.00 0.00 4.49
424 425 2.032054 ACTGTTTCATTGCTGTCACGTG 59.968 45.455 9.94 9.94 0.00 4.49
425 426 2.288666 ACTGTTTCATTGCTGTCACGT 58.711 42.857 0.00 0.00 0.00 4.49
426 427 3.363970 GGTACTGTTTCATTGCTGTCACG 60.364 47.826 0.00 0.00 0.00 4.35
427 428 3.058224 GGGTACTGTTTCATTGCTGTCAC 60.058 47.826 0.00 0.00 0.00 3.67
428 429 3.146066 GGGTACTGTTTCATTGCTGTCA 58.854 45.455 0.00 0.00 0.00 3.58
429 430 2.488153 GGGGTACTGTTTCATTGCTGTC 59.512 50.000 0.00 0.00 0.00 3.51
430 431 2.158534 TGGGGTACTGTTTCATTGCTGT 60.159 45.455 0.00 0.00 0.00 4.40
431 432 2.513753 TGGGGTACTGTTTCATTGCTG 58.486 47.619 0.00 0.00 0.00 4.41
432 433 2.969821 TGGGGTACTGTTTCATTGCT 57.030 45.000 0.00 0.00 0.00 3.91
433 434 3.153919 TCTTGGGGTACTGTTTCATTGC 58.846 45.455 0.00 0.00 0.00 3.56
434 435 5.476599 TCATTCTTGGGGTACTGTTTCATTG 59.523 40.000 0.00 0.00 0.00 2.82
435 436 5.640147 TCATTCTTGGGGTACTGTTTCATT 58.360 37.500 0.00 0.00 0.00 2.57
436 437 5.255397 TCATTCTTGGGGTACTGTTTCAT 57.745 39.130 0.00 0.00 0.00 2.57
437 438 4.715534 TCATTCTTGGGGTACTGTTTCA 57.284 40.909 0.00 0.00 0.00 2.69
438 439 6.884836 ACTATTCATTCTTGGGGTACTGTTTC 59.115 38.462 0.00 0.00 0.00 2.78
439 440 6.790319 ACTATTCATTCTTGGGGTACTGTTT 58.210 36.000 0.00 0.00 0.00 2.83
440 441 6.388619 ACTATTCATTCTTGGGGTACTGTT 57.611 37.500 0.00 0.00 0.00 3.16
441 442 6.442564 TGTACTATTCATTCTTGGGGTACTGT 59.557 38.462 0.00 0.00 32.33 3.55
442 443 6.884832 TGTACTATTCATTCTTGGGGTACTG 58.115 40.000 0.00 0.00 32.33 2.74
443 444 7.202102 GGATGTACTATTCATTCTTGGGGTACT 60.202 40.741 0.00 0.00 32.33 2.73
444 445 6.935208 GGATGTACTATTCATTCTTGGGGTAC 59.065 42.308 0.00 0.00 0.00 3.34
445 446 6.617784 TGGATGTACTATTCATTCTTGGGGTA 59.382 38.462 0.00 0.00 0.00 3.69
446 447 5.431731 TGGATGTACTATTCATTCTTGGGGT 59.568 40.000 0.00 0.00 0.00 4.95
447 448 5.765182 GTGGATGTACTATTCATTCTTGGGG 59.235 44.000 0.00 0.00 0.00 4.96
448 449 6.356556 TGTGGATGTACTATTCATTCTTGGG 58.643 40.000 0.00 0.00 0.00 4.12
449 450 7.173907 GGATGTGGATGTACTATTCATTCTTGG 59.826 40.741 0.00 0.00 0.00 3.61
450 451 7.095481 CGGATGTGGATGTACTATTCATTCTTG 60.095 40.741 0.00 0.00 0.00 3.02
451 452 6.931281 CGGATGTGGATGTACTATTCATTCTT 59.069 38.462 0.00 0.00 0.00 2.52
452 453 6.459066 CGGATGTGGATGTACTATTCATTCT 58.541 40.000 0.00 0.00 0.00 2.40
453 454 5.120830 GCGGATGTGGATGTACTATTCATTC 59.879 44.000 0.00 0.00 0.00 2.67
454 455 4.997395 GCGGATGTGGATGTACTATTCATT 59.003 41.667 0.00 0.00 0.00 2.57
455 456 4.563580 GGCGGATGTGGATGTACTATTCAT 60.564 45.833 0.00 0.00 0.00 2.57
456 457 3.244078 GGCGGATGTGGATGTACTATTCA 60.244 47.826 0.00 0.00 0.00 2.57
457 458 3.006967 AGGCGGATGTGGATGTACTATTC 59.993 47.826 0.00 0.00 0.00 1.75
458 459 2.972713 AGGCGGATGTGGATGTACTATT 59.027 45.455 0.00 0.00 0.00 1.73
459 460 2.563179 GAGGCGGATGTGGATGTACTAT 59.437 50.000 0.00 0.00 0.00 2.12
460 461 1.961394 GAGGCGGATGTGGATGTACTA 59.039 52.381 0.00 0.00 0.00 1.82
461 462 0.753262 GAGGCGGATGTGGATGTACT 59.247 55.000 0.00 0.00 0.00 2.73
462 463 0.753262 AGAGGCGGATGTGGATGTAC 59.247 55.000 0.00 0.00 0.00 2.90
463 464 1.961394 GTAGAGGCGGATGTGGATGTA 59.039 52.381 0.00 0.00 0.00 2.29
464 465 0.753262 GTAGAGGCGGATGTGGATGT 59.247 55.000 0.00 0.00 0.00 3.06
465 466 0.034059 GGTAGAGGCGGATGTGGATG 59.966 60.000 0.00 0.00 0.00 3.51
466 467 1.122019 GGGTAGAGGCGGATGTGGAT 61.122 60.000 0.00 0.00 0.00 3.41
467 468 1.760875 GGGTAGAGGCGGATGTGGA 60.761 63.158 0.00 0.00 0.00 4.02
468 469 2.822399 GGGTAGAGGCGGATGTGG 59.178 66.667 0.00 0.00 0.00 4.17
469 470 2.351336 GACGGGTAGAGGCGGATGTG 62.351 65.000 0.00 0.00 0.00 3.21
470 471 2.043248 ACGGGTAGAGGCGGATGT 60.043 61.111 0.00 0.00 0.00 3.06
471 472 2.728817 GACGGGTAGAGGCGGATG 59.271 66.667 0.00 0.00 0.00 3.51
472 473 2.905880 CGACGGGTAGAGGCGGAT 60.906 66.667 0.00 0.00 0.00 4.18
476 477 4.125695 AACGCGACGGGTAGAGGC 62.126 66.667 18.47 0.00 0.00 4.70
477 478 2.202570 CAACGCGACGGGTAGAGG 60.203 66.667 18.47 4.93 0.00 3.69
478 479 1.513586 GACAACGCGACGGGTAGAG 60.514 63.158 18.47 13.16 0.00 2.43
479 480 2.562912 GACAACGCGACGGGTAGA 59.437 61.111 18.47 0.00 0.00 2.59
480 481 2.505557 GGACAACGCGACGGGTAG 60.506 66.667 18.47 0.00 0.00 3.18
481 482 2.546645 GATGGACAACGCGACGGGTA 62.547 60.000 18.47 2.25 0.00 3.69
482 483 3.927163 GATGGACAACGCGACGGGT 62.927 63.158 15.93 12.27 0.00 5.28
483 484 3.186047 GATGGACAACGCGACGGG 61.186 66.667 15.93 10.72 0.00 5.28
484 485 3.541831 CGATGGACAACGCGACGG 61.542 66.667 15.93 3.63 0.00 4.79
485 486 3.541831 CCGATGGACAACGCGACG 61.542 66.667 15.93 5.37 0.00 5.12
486 487 3.849953 GCCGATGGACAACGCGAC 61.850 66.667 15.93 0.44 0.00 5.19
507 508 0.040958 GCTAAATCCAGCGATTGCCG 60.041 55.000 0.00 0.00 44.31 5.69
508 509 1.002033 CAGCTAAATCCAGCGATTGCC 60.002 52.381 0.00 0.00 46.52 4.52
509 510 1.598924 GCAGCTAAATCCAGCGATTGC 60.599 52.381 0.00 0.00 46.52 3.56
510 511 1.002033 GGCAGCTAAATCCAGCGATTG 60.002 52.381 0.00 0.00 46.52 2.67
511 512 1.312815 GGCAGCTAAATCCAGCGATT 58.687 50.000 0.00 0.00 46.52 3.34
512 513 0.181114 TGGCAGCTAAATCCAGCGAT 59.819 50.000 0.00 0.00 46.52 4.58
513 514 0.181114 ATGGCAGCTAAATCCAGCGA 59.819 50.000 0.00 0.00 46.52 4.93
514 515 0.590195 GATGGCAGCTAAATCCAGCG 59.410 55.000 0.00 0.00 46.52 5.18
515 516 1.336125 GTGATGGCAGCTAAATCCAGC 59.664 52.381 3.69 5.20 42.12 4.85
516 517 2.877168 GAGTGATGGCAGCTAAATCCAG 59.123 50.000 3.69 0.00 32.78 3.86
517 518 2.507058 AGAGTGATGGCAGCTAAATCCA 59.493 45.455 3.69 0.00 0.00 3.41
518 519 3.137533 GAGAGTGATGGCAGCTAAATCC 58.862 50.000 3.69 0.00 0.00 3.01
519 520 3.137533 GGAGAGTGATGGCAGCTAAATC 58.862 50.000 3.69 0.00 0.00 2.17
520 521 2.158696 GGGAGAGTGATGGCAGCTAAAT 60.159 50.000 3.69 0.00 0.00 1.40
521 522 1.210478 GGGAGAGTGATGGCAGCTAAA 59.790 52.381 3.69 0.00 0.00 1.85
522 523 0.833287 GGGAGAGTGATGGCAGCTAA 59.167 55.000 3.69 0.00 0.00 3.09
523 524 0.031716 AGGGAGAGTGATGGCAGCTA 60.032 55.000 3.69 0.00 0.00 3.32
524 525 1.306825 AGGGAGAGTGATGGCAGCT 60.307 57.895 3.69 0.00 0.00 4.24
525 526 1.145819 GAGGGAGAGTGATGGCAGC 59.854 63.158 0.00 0.00 0.00 5.25
526 527 1.440893 CGAGGGAGAGTGATGGCAG 59.559 63.158 0.00 0.00 0.00 4.85
527 528 2.725312 GCGAGGGAGAGTGATGGCA 61.725 63.158 0.00 0.00 0.00 4.92
528 529 2.107953 GCGAGGGAGAGTGATGGC 59.892 66.667 0.00 0.00 0.00 4.40
529 530 2.415010 CGCGAGGGAGAGTGATGG 59.585 66.667 0.00 0.00 0.00 3.51
530 531 2.279120 GCGCGAGGGAGAGTGATG 60.279 66.667 12.10 0.00 0.00 3.07
531 532 2.055042 AAGCGCGAGGGAGAGTGAT 61.055 57.895 12.10 0.00 0.00 3.06
532 533 2.676822 AAGCGCGAGGGAGAGTGA 60.677 61.111 12.10 0.00 0.00 3.41
533 534 2.507992 CAAGCGCGAGGGAGAGTG 60.508 66.667 12.10 0.00 0.00 3.51
534 535 3.764466 CCAAGCGCGAGGGAGAGT 61.764 66.667 12.10 0.00 0.00 3.24
535 536 3.708220 GACCAAGCGCGAGGGAGAG 62.708 68.421 22.24 0.00 0.00 3.20
536 537 3.760035 GACCAAGCGCGAGGGAGA 61.760 66.667 22.24 0.00 0.00 3.71
541 542 4.421479 AGACCGACCAAGCGCGAG 62.421 66.667 12.10 0.00 0.00 5.03
542 543 4.717629 CAGACCGACCAAGCGCGA 62.718 66.667 12.10 0.00 0.00 5.87
545 546 3.114616 CTGCAGACCGACCAAGCG 61.115 66.667 8.42 0.00 0.00 4.68
546 547 3.426568 GCTGCAGACCGACCAAGC 61.427 66.667 20.43 0.00 0.00 4.01
547 548 1.165907 TTTGCTGCAGACCGACCAAG 61.166 55.000 20.43 0.00 0.00 3.61
548 549 1.153066 TTTGCTGCAGACCGACCAA 60.153 52.632 20.43 8.06 0.00 3.67
549 550 1.891919 GTTTGCTGCAGACCGACCA 60.892 57.895 20.43 0.83 0.00 4.02
550 551 2.617274 GGTTTGCTGCAGACCGACC 61.617 63.158 24.18 14.87 29.22 4.79
551 552 2.617274 GGGTTTGCTGCAGACCGAC 61.617 63.158 29.12 16.81 39.21 4.79
552 553 2.281484 GGGTTTGCTGCAGACCGA 60.281 61.111 29.12 1.47 39.21 4.69
553 554 1.455383 AAAGGGTTTGCTGCAGACCG 61.455 55.000 29.12 0.00 39.21 4.79
554 555 0.032540 CAAAGGGTTTGCTGCAGACC 59.967 55.000 28.73 28.73 37.82 3.85
555 556 0.746659 ACAAAGGGTTTGCTGCAGAC 59.253 50.000 20.43 14.34 44.39 3.51
556 557 1.136695 CAACAAAGGGTTTGCTGCAGA 59.863 47.619 20.43 0.00 44.39 4.26
557 558 1.574134 CAACAAAGGGTTTGCTGCAG 58.426 50.000 10.11 10.11 44.39 4.41
558 559 3.756739 CAACAAAGGGTTTGCTGCA 57.243 47.368 0.00 0.00 44.39 4.41
560 561 1.574134 CTGCAACAAAGGGTTTGCTG 58.426 50.000 7.73 3.72 44.39 4.41
561 562 0.179076 GCTGCAACAAAGGGTTTGCT 60.179 50.000 7.73 0.00 44.39 3.91
562 563 1.159713 GGCTGCAACAAAGGGTTTGC 61.160 55.000 0.50 0.00 44.39 3.68
563 564 0.875474 CGGCTGCAACAAAGGGTTTG 60.875 55.000 0.50 0.00 45.95 2.93
564 565 1.040339 TCGGCTGCAACAAAGGGTTT 61.040 50.000 0.50 0.00 37.72 3.27
565 566 1.454847 TCGGCTGCAACAAAGGGTT 60.455 52.632 0.50 0.00 41.47 4.11
566 567 1.898574 CTCGGCTGCAACAAAGGGT 60.899 57.895 0.50 0.00 0.00 4.34
567 568 2.956987 CTCGGCTGCAACAAAGGG 59.043 61.111 0.50 0.00 0.00 3.95
568 569 2.256461 GCTCGGCTGCAACAAAGG 59.744 61.111 0.50 0.00 0.00 3.11
569 570 2.256461 GGCTCGGCTGCAACAAAG 59.744 61.111 0.50 0.00 34.04 2.77
570 571 2.518112 TGGCTCGGCTGCAACAAA 60.518 55.556 0.50 0.00 34.04 2.83
571 572 2.753009 ATCTGGCTCGGCTGCAACAA 62.753 55.000 0.50 0.00 34.04 2.83
572 573 3.258228 ATCTGGCTCGGCTGCAACA 62.258 57.895 0.50 0.00 34.04 3.33
573 574 2.437359 ATCTGGCTCGGCTGCAAC 60.437 61.111 0.50 0.00 34.04 4.17
574 575 2.437180 CATCTGGCTCGGCTGCAA 60.437 61.111 0.50 0.00 34.04 4.08
575 576 2.467993 TTTCATCTGGCTCGGCTGCA 62.468 55.000 0.50 0.00 34.04 4.41
576 577 1.308069 TTTTCATCTGGCTCGGCTGC 61.308 55.000 0.00 0.00 0.00 5.25
577 578 1.167851 TTTTTCATCTGGCTCGGCTG 58.832 50.000 0.00 0.00 0.00 4.85
578 579 3.650647 TTTTTCATCTGGCTCGGCT 57.349 47.368 0.00 0.00 0.00 5.52
594 595 9.853555 GTTCAAAATTTTCAATTTGGACCTTTT 57.146 25.926 0.00 0.00 38.53 2.27
595 596 9.241919 AGTTCAAAATTTTCAATTTGGACCTTT 57.758 25.926 0.00 0.00 43.17 3.11
596 597 8.676401 CAGTTCAAAATTTTCAATTTGGACCTT 58.324 29.630 0.00 0.00 43.17 3.50
597 598 7.282901 CCAGTTCAAAATTTTCAATTTGGACCT 59.717 33.333 12.62 0.00 43.17 3.85
598 599 7.416817 CCAGTTCAAAATTTTCAATTTGGACC 58.583 34.615 12.62 0.00 43.17 4.46
599 600 7.066887 ACCCAGTTCAAAATTTTCAATTTGGAC 59.933 33.333 17.03 5.85 42.71 4.02
600 601 7.115414 ACCCAGTTCAAAATTTTCAATTTGGA 58.885 30.769 17.03 2.78 37.19 3.53
601 602 7.332213 ACCCAGTTCAAAATTTTCAATTTGG 57.668 32.000 11.57 11.57 37.19 3.28
602 603 9.323985 TCTACCCAGTTCAAAATTTTCAATTTG 57.676 29.630 0.00 0.00 37.77 2.32
603 604 9.546428 CTCTACCCAGTTCAAAATTTTCAATTT 57.454 29.630 0.00 0.00 0.00 1.82
604 605 8.923270 TCTCTACCCAGTTCAAAATTTTCAATT 58.077 29.630 0.00 0.00 0.00 2.32
605 606 8.477419 TCTCTACCCAGTTCAAAATTTTCAAT 57.523 30.769 0.00 0.00 0.00 2.57
606 607 7.889873 TCTCTACCCAGTTCAAAATTTTCAA 57.110 32.000 0.00 0.00 0.00 2.69
607 608 8.359642 CAATCTCTACCCAGTTCAAAATTTTCA 58.640 33.333 0.00 0.00 0.00 2.69
608 609 7.329471 GCAATCTCTACCCAGTTCAAAATTTTC 59.671 37.037 0.00 0.00 0.00 2.29
609 610 7.015584 AGCAATCTCTACCCAGTTCAAAATTTT 59.984 33.333 0.00 0.00 0.00 1.82
610 611 6.494835 AGCAATCTCTACCCAGTTCAAAATTT 59.505 34.615 0.00 0.00 0.00 1.82
611 612 6.012745 AGCAATCTCTACCCAGTTCAAAATT 58.987 36.000 0.00 0.00 0.00 1.82
612 613 5.574188 AGCAATCTCTACCCAGTTCAAAAT 58.426 37.500 0.00 0.00 0.00 1.82
613 614 4.985538 AGCAATCTCTACCCAGTTCAAAA 58.014 39.130 0.00 0.00 0.00 2.44
614 615 4.579869 GAGCAATCTCTACCCAGTTCAAA 58.420 43.478 0.00 0.00 36.42 2.69
615 616 3.368427 CGAGCAATCTCTACCCAGTTCAA 60.368 47.826 0.00 0.00 37.19 2.69
616 617 2.166459 CGAGCAATCTCTACCCAGTTCA 59.834 50.000 0.00 0.00 37.19 3.18
617 618 2.166664 ACGAGCAATCTCTACCCAGTTC 59.833 50.000 0.00 0.00 37.19 3.01
618 619 2.166664 GACGAGCAATCTCTACCCAGTT 59.833 50.000 0.00 0.00 37.19 3.16
619 620 1.751924 GACGAGCAATCTCTACCCAGT 59.248 52.381 0.00 0.00 37.19 4.00
620 621 1.067821 GGACGAGCAATCTCTACCCAG 59.932 57.143 0.00 0.00 37.19 4.45
621 622 1.112113 GGACGAGCAATCTCTACCCA 58.888 55.000 0.00 0.00 37.19 4.51
622 623 1.112113 TGGACGAGCAATCTCTACCC 58.888 55.000 0.00 0.00 37.19 3.69
623 624 1.476891 TGTGGACGAGCAATCTCTACC 59.523 52.381 0.00 0.00 37.19 3.18
624 625 2.423892 TCTGTGGACGAGCAATCTCTAC 59.576 50.000 0.00 0.00 37.19 2.59
625 626 2.685388 CTCTGTGGACGAGCAATCTCTA 59.315 50.000 0.00 0.00 37.19 2.43
626 627 1.476085 CTCTGTGGACGAGCAATCTCT 59.524 52.381 0.00 0.00 37.19 3.10
627 628 1.470632 CCTCTGTGGACGAGCAATCTC 60.471 57.143 0.00 0.00 38.35 2.75
628 629 0.534412 CCTCTGTGGACGAGCAATCT 59.466 55.000 0.00 0.00 38.35 2.40
629 630 0.460987 CCCTCTGTGGACGAGCAATC 60.461 60.000 0.00 0.00 38.35 2.67
630 631 1.599047 CCCTCTGTGGACGAGCAAT 59.401 57.895 0.00 0.00 38.35 3.56
631 632 2.583441 CCCCTCTGTGGACGAGCAA 61.583 63.158 0.00 0.00 38.35 3.91
632 633 2.997315 CCCCTCTGTGGACGAGCA 60.997 66.667 0.00 0.00 38.35 4.26
633 634 3.775654 CCCCCTCTGTGGACGAGC 61.776 72.222 0.00 0.00 38.35 5.03
634 635 2.283966 ACCCCCTCTGTGGACGAG 60.284 66.667 0.00 0.00 38.35 4.18
635 636 2.283676 GACCCCCTCTGTGGACGA 60.284 66.667 0.00 0.00 38.35 4.20
636 637 2.172483 CTTGACCCCCTCTGTGGACG 62.172 65.000 0.00 0.00 38.35 4.79
637 638 0.836400 TCTTGACCCCCTCTGTGGAC 60.836 60.000 0.00 0.00 38.35 4.02
638 639 0.836400 GTCTTGACCCCCTCTGTGGA 60.836 60.000 0.00 0.00 38.35 4.02
644 645 0.393537 CTGCATGTCTTGACCCCCTC 60.394 60.000 0.00 0.00 0.00 4.30
647 648 1.909700 TTTCTGCATGTCTTGACCCC 58.090 50.000 0.00 0.00 0.00 4.95
653 654 6.527423 ACCAATTGATTTTTCTGCATGTCTT 58.473 32.000 7.12 0.00 0.00 3.01
677 678 3.695830 AACGGAAAGACTATGGCTCAA 57.304 42.857 0.00 0.00 0.00 3.02
752 753 5.124297 TCAACGACATACCTGAAATAGACGA 59.876 40.000 0.00 0.00 0.00 4.20
767 768 3.531934 TCATGAGCTGATCAACGACAT 57.468 42.857 0.00 1.73 42.53 3.06
784 785 2.671070 CTGGGAGCGGGTGTTCAT 59.329 61.111 0.00 0.00 0.00 2.57
844 861 1.493950 GAGATGCGATGGTTGCGGAG 61.494 60.000 0.00 0.00 34.24 4.63
860 877 1.485124 TGCTGGATTTAGCCGAGAGA 58.515 50.000 0.00 0.00 43.02 3.10
986 1003 1.218854 GCCATGGCCATGTTGGTTC 59.781 57.895 37.30 18.50 40.46 3.62
1168 1206 4.908687 CGGAATGGGCGGCGATGA 62.909 66.667 12.98 0.00 0.00 2.92
1302 1367 2.886523 TGGGAATGCAAGAAGACACAAG 59.113 45.455 0.00 0.00 0.00 3.16
1321 1389 3.988379 ACACAACTACACAAGCAATGG 57.012 42.857 0.00 0.00 0.00 3.16
1350 1418 4.407365 TCCTTTGTCCCATTCTTTCTTCC 58.593 43.478 0.00 0.00 0.00 3.46
1363 1431 4.466015 ACTCTCTCATCTCTTCCTTTGTCC 59.534 45.833 0.00 0.00 0.00 4.02
1403 1481 0.312102 CATCAGCTAGCGTGGATCGA 59.688 55.000 9.55 0.00 42.86 3.59
1404 1482 0.312102 TCATCAGCTAGCGTGGATCG 59.688 55.000 9.55 8.92 43.12 3.69
1410 1488 4.034510 GCAAATTTAGTCATCAGCTAGCGT 59.965 41.667 9.55 0.00 0.00 5.07
1425 1503 3.571590 ACAGGGACAACTGGCAAATTTA 58.428 40.909 0.00 0.00 42.75 1.40
1460 1545 9.207868 ACTAGAAACTATAGCTTCTTCCTGAAT 57.792 33.333 20.53 0.71 33.14 2.57
1473 1558 9.141400 GGCCAAATCGATTACTAGAAACTATAG 57.859 37.037 11.83 0.00 0.00 1.31
1479 1564 7.120923 ACTAGGCCAAATCGATTACTAGAAA 57.879 36.000 27.59 9.75 32.82 2.52
1529 1614 4.403734 GGTAACTCCCACTCCAAAAATCA 58.596 43.478 0.00 0.00 0.00 2.57
1547 1632 1.603678 GGCGAAACAGTGAGTCGGTAA 60.604 52.381 17.58 0.00 35.35 2.85
1664 1751 7.479897 TGTATACAAAAAGCTACGTGTTTGA 57.520 32.000 2.20 0.00 35.44 2.69
1748 1835 9.965902 AGGAGTAGACATCAAAACATTTATTCT 57.034 29.630 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.