Multiple sequence alignment - TraesCS3A01G020600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G020600 chr3A 100.000 3647 0 0 1 3647 12031638 12027992 0.000000e+00 6735.0
1 TraesCS3A01G020600 chr3A 93.097 1637 101 2 995 2622 11958976 11957343 0.000000e+00 2386.0
2 TraesCS3A01G020600 chr3A 85.363 1626 196 14 1016 2620 11949008 11947404 0.000000e+00 1646.0
3 TraesCS3A01G020600 chr3A 84.774 1550 150 32 1114 2632 12040148 12038654 0.000000e+00 1476.0
4 TraesCS3A01G020600 chr3A 85.333 225 26 5 3317 3539 197856486 197856705 3.660000e-55 226.0
5 TraesCS3A01G020600 chr3A 86.364 220 7 9 793 990 11959241 11959023 6.130000e-53 219.0
6 TraesCS3A01G020600 chr3B 92.954 1845 88 15 837 2647 10921643 10923479 0.000000e+00 2649.0
7 TraesCS3A01G020600 chr3B 92.395 1854 104 15 803 2622 11010458 11008608 0.000000e+00 2608.0
8 TraesCS3A01G020600 chr3B 85.181 1633 207 14 1010 2620 10963762 10962143 0.000000e+00 1642.0
9 TraesCS3A01G020600 chr3B 85.705 1546 152 43 1120 2632 11067008 11065499 0.000000e+00 1567.0
10 TraesCS3A01G020600 chr3D 95.103 1654 81 0 994 2647 8911921 8913574 0.000000e+00 2606.0
11 TraesCS3A01G020600 chr3D 93.468 1638 95 4 994 2622 8927131 8928765 0.000000e+00 2422.0
12 TraesCS3A01G020600 chr3D 85.802 1634 198 15 1007 2619 8935582 8937202 0.000000e+00 1701.0
13 TraesCS3A01G020600 chr3D 87.095 1542 148 23 1121 2632 8887746 8889266 0.000000e+00 1698.0
14 TraesCS3A01G020600 chr3D 93.007 429 26 4 2642 3067 8914177 8914604 1.110000e-174 623.0
15 TraesCS3A01G020600 chr3D 87.073 410 48 5 312 720 499983751 499984156 3.320000e-125 459.0
16 TraesCS3A01G020600 chr3D 80.941 425 43 24 2641 3058 8891168 8891561 5.920000e-78 302.0
17 TraesCS3A01G020600 chr3D 85.096 208 15 6 790 981 8911657 8911864 7.990000e-47 198.0
18 TraesCS3A01G020600 chr3D 86.170 188 11 6 812 985 8926892 8927078 4.810000e-44 189.0
19 TraesCS3A01G020600 chr3D 90.741 54 1 3 3574 3624 595706566 595706618 6.530000e-08 69.4
20 TraesCS3A01G020600 chr5A 95.524 782 31 4 1 779 470106383 470105603 0.000000e+00 1247.0
21 TraesCS3A01G020600 chr5A 97.281 331 9 0 3317 3647 534903735 534903405 2.460000e-156 562.0
22 TraesCS3A01G020600 chr5A 92.857 98 6 1 683 780 226772522 226772426 1.370000e-29 141.0
23 TraesCS3A01G020600 chr6B 90.000 580 50 6 1 576 506018683 506019258 0.000000e+00 743.0
24 TraesCS3A01G020600 chr2A 98.485 330 5 0 3318 3647 723106729 723107058 1.890000e-162 582.0
25 TraesCS3A01G020600 chr6A 96.970 330 9 1 3318 3647 608277952 608277624 1.480000e-153 553.0
26 TraesCS3A01G020600 chr5D 87.651 413 47 4 312 723 27450184 27449775 9.160000e-131 477.0
27 TraesCS3A01G020600 chr5D 86.408 412 52 3 312 723 206000822 206000415 7.180000e-122 448.0
28 TraesCS3A01G020600 chr4D 86.650 412 48 6 312 723 361600902 361600498 2.000000e-122 449.0
29 TraesCS3A01G020600 chr7D 86.199 413 51 6 312 723 142651882 142651475 3.340000e-120 442.0
30 TraesCS3A01G020600 chr7A 84.096 415 57 8 312 724 524853982 524854389 3.410000e-105 392.0
31 TraesCS3A01G020600 chr4B 87.281 228 25 3 3318 3542 142674716 142674942 1.300000e-64 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G020600 chr3A 12027992 12031638 3646 True 6735.000000 6735 100.000000 1 3647 1 chr3A.!!$R2 3646
1 TraesCS3A01G020600 chr3A 11947404 11949008 1604 True 1646.000000 1646 85.363000 1016 2620 1 chr3A.!!$R1 1604
2 TraesCS3A01G020600 chr3A 12038654 12040148 1494 True 1476.000000 1476 84.774000 1114 2632 1 chr3A.!!$R3 1518
3 TraesCS3A01G020600 chr3A 11957343 11959241 1898 True 1302.500000 2386 89.730500 793 2622 2 chr3A.!!$R4 1829
4 TraesCS3A01G020600 chr3B 10921643 10923479 1836 False 2649.000000 2649 92.954000 837 2647 1 chr3B.!!$F1 1810
5 TraesCS3A01G020600 chr3B 11008608 11010458 1850 True 2608.000000 2608 92.395000 803 2622 1 chr3B.!!$R2 1819
6 TraesCS3A01G020600 chr3B 10962143 10963762 1619 True 1642.000000 1642 85.181000 1010 2620 1 chr3B.!!$R1 1610
7 TraesCS3A01G020600 chr3B 11065499 11067008 1509 True 1567.000000 1567 85.705000 1120 2632 1 chr3B.!!$R3 1512
8 TraesCS3A01G020600 chr3D 8935582 8937202 1620 False 1701.000000 1701 85.802000 1007 2619 1 chr3D.!!$F1 1612
9 TraesCS3A01G020600 chr3D 8926892 8928765 1873 False 1305.500000 2422 89.819000 812 2622 2 chr3D.!!$F6 1810
10 TraesCS3A01G020600 chr3D 8911657 8914604 2947 False 1142.333333 2606 91.068667 790 3067 3 chr3D.!!$F5 2277
11 TraesCS3A01G020600 chr3D 8887746 8891561 3815 False 1000.000000 1698 84.018000 1121 3058 2 chr3D.!!$F4 1937
12 TraesCS3A01G020600 chr5A 470105603 470106383 780 True 1247.000000 1247 95.524000 1 779 1 chr5A.!!$R2 778
13 TraesCS3A01G020600 chr6B 506018683 506019258 575 False 743.000000 743 90.000000 1 576 1 chr6B.!!$F1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
870 891 0.970640 ACCATGCATGCACATGTGTT 59.029 45.000 25.37 12.16 44.88 3.32 F
1139 1225 1.926511 GATGGCAAGCAGAACACCGG 61.927 60.000 0.00 0.00 0.00 5.28 F
1866 1982 1.079819 CACGTTCCTCAGCACCGAT 60.080 57.895 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 1875 0.178831 AGGAAGTCCCATGTTCCCCT 60.179 55.0 8.75 0.0 42.97 4.79 R
2623 2766 0.310543 TCTTTGGTTGCGTGCATGAC 59.689 50.0 10.93 0.0 0.00 3.06 R
3473 5528 0.030501 TCCTTCCCGTATCCCACCAT 60.031 55.0 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 6.601332 TCCTTGTAGTCCTTTCATTGAAACT 58.399 36.000 7.74 7.46 0.00 2.66
351 355 6.710278 TGTGTTTTGTAGTAACTATACCCCC 58.290 40.000 0.00 0.00 32.08 5.40
398 403 7.092174 TGGGATTGGGAGTAGTATATGTTGTTT 60.092 37.037 0.00 0.00 0.00 2.83
405 410 7.069578 GGGAGTAGTATATGTTGTTTCAGAGGA 59.930 40.741 0.00 0.00 0.00 3.71
522 528 9.893305 CTTAAGTTTCATTCGAACTAATTGGTT 57.107 29.630 6.93 6.93 36.38 3.67
610 617 4.829064 TTTGAAGAGGATTCAAACACGG 57.171 40.909 10.79 0.00 41.74 4.94
658 665 6.795000 AGAGCAAGGGTAGGGAGAAATATATT 59.205 38.462 0.00 0.00 0.00 1.28
663 670 8.328758 CAAGGGTAGGGAGAAATATATTATGCA 58.671 37.037 0.00 0.00 0.00 3.96
670 677 6.830838 GGGAGAAATATATTATGCAAGGAGGG 59.169 42.308 0.00 0.00 0.00 4.30
700 707 7.352739 GTTAAAGAAATATGACCATGCCTACG 58.647 38.462 0.00 0.00 0.00 3.51
702 709 4.632153 AGAAATATGACCATGCCTACGAC 58.368 43.478 0.00 0.00 0.00 4.34
724 731 4.201783 ACGAAAGAAGTGGAAGAAACAACG 60.202 41.667 0.00 0.00 0.00 4.10
739 746 6.831769 AGAAACAACGTGCTTCACTATATTG 58.168 36.000 0.00 0.00 31.34 1.90
751 758 7.230510 TGCTTCACTATATTGTTTTGTTCACCT 59.769 33.333 0.00 0.00 0.00 4.00
766 773 3.118454 CCTGTAGCAACGCACGGG 61.118 66.667 0.00 0.00 32.88 5.28
779 786 4.981806 ACGCACGGGTATTTAACTAGTA 57.018 40.909 0.00 0.00 0.00 1.82
780 787 4.672409 ACGCACGGGTATTTAACTAGTAC 58.328 43.478 0.00 0.00 0.00 2.73
781 788 4.399303 ACGCACGGGTATTTAACTAGTACT 59.601 41.667 0.00 0.00 0.00 2.73
782 789 5.588648 ACGCACGGGTATTTAACTAGTACTA 59.411 40.000 1.89 1.89 0.00 1.82
783 790 6.138761 CGCACGGGTATTTAACTAGTACTAG 58.861 44.000 25.30 25.30 39.04 2.57
785 792 7.042051 CGCACGGGTATTTAACTAGTACTAGTA 60.042 40.741 30.89 18.77 44.96 1.82
786 793 8.286097 GCACGGGTATTTAACTAGTACTAGTAG 58.714 40.741 30.89 12.33 44.96 2.57
787 794 9.331282 CACGGGTATTTAACTAGTACTAGTAGT 57.669 37.037 30.89 20.69 44.96 2.73
809 816 6.070656 AGTAATGCATGGCCTTGTAATACAT 58.929 36.000 26.12 16.06 0.00 2.29
817 824 1.930503 CCTTGTAATACATGCACGCGA 59.069 47.619 15.93 0.00 0.00 5.87
832 839 1.720301 GCGAGATCCAAAGCTGCTG 59.280 57.895 1.35 0.00 0.00 4.41
870 891 0.970640 ACCATGCATGCACATGTGTT 59.029 45.000 25.37 12.16 44.88 3.32
872 893 1.996898 CCATGCATGCACATGTGTTTC 59.003 47.619 25.37 11.02 44.88 2.78
1080 1166 2.665185 GACCTGAACGCCGCAGTT 60.665 61.111 1.09 1.09 36.99 3.16
1139 1225 1.926511 GATGGCAAGCAGAACACCGG 61.927 60.000 0.00 0.00 0.00 5.28
1310 1399 2.180017 GGCGTTCTTCTCGGCGTA 59.820 61.111 6.85 0.00 43.07 4.42
1668 1781 2.110213 AACAAAGACCTCGCGGCA 59.890 55.556 6.13 0.00 0.00 5.69
1762 1875 2.282958 ACTTGCTCGTCTCCGGGA 60.283 61.111 0.00 0.00 36.35 5.14
1815 1931 2.151388 AACCGGCTGGGGTAACACT 61.151 57.895 18.00 0.00 44.55 3.55
1866 1982 1.079819 CACGTTCCTCAGCACCGAT 60.080 57.895 0.00 0.00 0.00 4.18
2101 2232 1.677576 CTCTGCTTGGCAAGTTGAACA 59.322 47.619 26.71 15.19 38.41 3.18
2567 2707 1.674441 TGATAGCTGGAAGTACGACCG 59.326 52.381 0.00 0.00 35.30 4.79
2622 2765 4.982295 CCGCACGAGTTTGATCAATATCTA 59.018 41.667 9.40 0.00 32.93 1.98
2623 2766 5.117745 CCGCACGAGTTTGATCAATATCTAG 59.882 44.000 9.40 10.67 32.93 2.43
2624 2767 5.687730 CGCACGAGTTTGATCAATATCTAGT 59.312 40.000 9.40 11.23 32.93 2.57
2655 4705 4.562789 GCAACCAAAGATTAATCGGAAAGC 59.437 41.667 13.07 9.90 0.00 3.51
2663 4713 4.345257 AGATTAATCGGAAAGCTAGCTGGA 59.655 41.667 20.16 13.69 0.00 3.86
2672 4722 5.320277 GGAAAGCTAGCTGGATAATTGGAT 58.680 41.667 20.16 0.00 0.00 3.41
2681 4731 7.521871 AGCTGGATAATTGGATGAATTCTTC 57.478 36.000 11.89 11.89 35.74 2.87
2807 4860 4.517952 TTGTATTCTGTTGCCATGGTTG 57.482 40.909 14.67 0.00 0.00 3.77
2881 4934 3.312421 TCACAAAAAGAGAAGACTTGCCG 59.688 43.478 0.00 0.00 0.00 5.69
2905 4958 2.991190 GCAAATGTTGAGACATGGCAAG 59.009 45.455 0.00 0.00 45.58 4.01
2917 4970 6.883756 TGAGACATGGCAAGTATTCATAAACA 59.116 34.615 0.00 0.00 0.00 2.83
2919 4972 7.538575 AGACATGGCAAGTATTCATAAACAAC 58.461 34.615 0.00 0.00 0.00 3.32
2966 5019 7.060633 CGAATTACACCTAAAAATGTTGTCTGC 59.939 37.037 0.00 0.00 0.00 4.26
2967 5020 6.701145 TTACACCTAAAAATGTTGTCTGCA 57.299 33.333 0.00 0.00 0.00 4.41
2968 5021 5.186996 ACACCTAAAAATGTTGTCTGCAG 57.813 39.130 7.63 7.63 0.00 4.41
2969 5022 4.644685 ACACCTAAAAATGTTGTCTGCAGT 59.355 37.500 14.67 0.00 0.00 4.40
2996 5050 6.311200 GTCCATTCATTTTACACAAGATTGCC 59.689 38.462 0.00 0.00 0.00 4.52
2997 5051 6.014755 TCCATTCATTTTACACAAGATTGCCA 60.015 34.615 0.00 0.00 0.00 4.92
2998 5052 6.091169 CCATTCATTTTACACAAGATTGCCAC 59.909 38.462 0.00 0.00 0.00 5.01
3068 5123 9.358406 ACAAGATATCTAAATTTGCCATGATCA 57.642 29.630 5.46 0.00 0.00 2.92
3069 5124 9.841880 CAAGATATCTAAATTTGCCATGATCAG 57.158 33.333 5.46 0.00 0.00 2.90
3070 5125 9.584008 AAGATATCTAAATTTGCCATGATCAGT 57.416 29.630 5.46 0.00 0.00 3.41
3071 5126 9.228949 AGATATCTAAATTTGCCATGATCAGTC 57.771 33.333 2.53 0.00 0.00 3.51
3072 5127 6.645790 ATCTAAATTTGCCATGATCAGTCC 57.354 37.500 0.09 0.00 0.00 3.85
3073 5128 5.508567 TCTAAATTTGCCATGATCAGTCCA 58.491 37.500 0.09 0.00 0.00 4.02
3074 5129 6.131264 TCTAAATTTGCCATGATCAGTCCAT 58.869 36.000 0.09 0.00 0.00 3.41
3075 5130 4.931661 AATTTGCCATGATCAGTCCATC 57.068 40.909 0.09 0.00 0.00 3.51
3076 5131 2.353357 TTGCCATGATCAGTCCATCC 57.647 50.000 0.09 0.00 0.00 3.51
3077 5132 1.215140 TGCCATGATCAGTCCATCCA 58.785 50.000 0.09 0.00 0.00 3.41
3078 5133 1.142262 TGCCATGATCAGTCCATCCAG 59.858 52.381 0.09 0.00 0.00 3.86
3079 5134 1.142465 GCCATGATCAGTCCATCCAGT 59.858 52.381 0.09 0.00 0.00 4.00
3080 5135 2.422519 GCCATGATCAGTCCATCCAGTT 60.423 50.000 0.09 0.00 0.00 3.16
3081 5136 3.894759 CCATGATCAGTCCATCCAGTTT 58.105 45.455 0.09 0.00 0.00 2.66
3082 5137 3.630769 CCATGATCAGTCCATCCAGTTTG 59.369 47.826 0.09 0.00 0.00 2.93
3083 5138 2.715046 TGATCAGTCCATCCAGTTTGC 58.285 47.619 0.00 0.00 0.00 3.68
3084 5139 2.040145 TGATCAGTCCATCCAGTTTGCA 59.960 45.455 0.00 0.00 0.00 4.08
3085 5140 1.896220 TCAGTCCATCCAGTTTGCAC 58.104 50.000 0.00 0.00 0.00 4.57
3086 5141 1.142667 TCAGTCCATCCAGTTTGCACA 59.857 47.619 0.00 0.00 0.00 4.57
3087 5142 1.955778 CAGTCCATCCAGTTTGCACAA 59.044 47.619 0.00 0.00 0.00 3.33
3088 5143 2.361757 CAGTCCATCCAGTTTGCACAAA 59.638 45.455 0.00 0.00 0.00 2.83
3089 5144 3.030291 AGTCCATCCAGTTTGCACAAAA 58.970 40.909 0.00 0.00 31.33 2.44
3090 5145 3.642848 AGTCCATCCAGTTTGCACAAAAT 59.357 39.130 0.00 0.00 31.33 1.82
3091 5146 4.101430 AGTCCATCCAGTTTGCACAAAATT 59.899 37.500 0.00 0.00 31.33 1.82
3092 5147 5.304101 AGTCCATCCAGTTTGCACAAAATTA 59.696 36.000 0.00 0.00 31.33 1.40
3093 5148 6.014327 AGTCCATCCAGTTTGCACAAAATTAT 60.014 34.615 0.00 0.00 31.33 1.28
3094 5149 6.311200 GTCCATCCAGTTTGCACAAAATTATC 59.689 38.462 0.00 0.00 31.33 1.75
3095 5150 6.014755 TCCATCCAGTTTGCACAAAATTATCA 60.015 34.615 0.00 0.00 31.33 2.15
3096 5151 6.819649 CCATCCAGTTTGCACAAAATTATCAT 59.180 34.615 0.00 0.00 31.33 2.45
3097 5152 7.201574 CCATCCAGTTTGCACAAAATTATCATG 60.202 37.037 0.00 0.00 31.33 3.07
3098 5153 6.757237 TCCAGTTTGCACAAAATTATCATGT 58.243 32.000 0.00 0.00 31.33 3.21
3099 5154 7.890515 TCCAGTTTGCACAAAATTATCATGTA 58.109 30.769 0.00 0.00 31.33 2.29
3100 5155 7.812191 TCCAGTTTGCACAAAATTATCATGTAC 59.188 33.333 0.00 0.00 31.33 2.90
3101 5156 7.814107 CCAGTTTGCACAAAATTATCATGTACT 59.186 33.333 0.00 0.00 31.33 2.73
3102 5157 9.838975 CAGTTTGCACAAAATTATCATGTACTA 57.161 29.630 0.00 0.00 31.33 1.82
3131 5186 9.487790 AATCAAAATTTCATGAATTTACCGTGT 57.512 25.926 9.40 0.00 44.98 4.49
3133 5188 9.967346 TCAAAATTTCATGAATTTACCGTGTAA 57.033 25.926 9.40 0.00 44.98 2.41
3171 5226 9.695526 TTTCTAAATTTTCCTTGATGATGTGTG 57.304 29.630 0.00 0.00 0.00 3.82
3172 5227 8.634335 TCTAAATTTTCCTTGATGATGTGTGA 57.366 30.769 0.00 0.00 0.00 3.58
3173 5228 9.076781 TCTAAATTTTCCTTGATGATGTGTGAA 57.923 29.630 0.00 0.00 0.00 3.18
3174 5229 7.951530 AAATTTTCCTTGATGATGTGTGAAC 57.048 32.000 0.00 0.00 0.00 3.18
3175 5230 6.906157 ATTTTCCTTGATGATGTGTGAACT 57.094 33.333 0.00 0.00 0.00 3.01
3176 5231 5.947228 TTTCCTTGATGATGTGTGAACTC 57.053 39.130 0.00 0.00 0.00 3.01
3177 5232 4.622260 TCCTTGATGATGTGTGAACTCA 57.378 40.909 0.00 0.00 0.00 3.41
3178 5233 5.169992 TCCTTGATGATGTGTGAACTCAT 57.830 39.130 0.00 0.00 33.32 2.90
3179 5234 5.181009 TCCTTGATGATGTGTGAACTCATC 58.819 41.667 15.31 15.31 43.54 2.92
3191 5246 3.909430 TGAACTCATCACTCGTACCAAC 58.091 45.455 0.00 0.00 31.50 3.77
3192 5247 3.319689 TGAACTCATCACTCGTACCAACA 59.680 43.478 0.00 0.00 31.50 3.33
3193 5248 4.021456 TGAACTCATCACTCGTACCAACAT 60.021 41.667 0.00 0.00 31.50 2.71
3194 5249 4.537135 ACTCATCACTCGTACCAACATT 57.463 40.909 0.00 0.00 0.00 2.71
3195 5250 5.654603 ACTCATCACTCGTACCAACATTA 57.345 39.130 0.00 0.00 0.00 1.90
3196 5251 5.408356 ACTCATCACTCGTACCAACATTAC 58.592 41.667 0.00 0.00 0.00 1.89
3197 5252 5.047590 ACTCATCACTCGTACCAACATTACA 60.048 40.000 0.00 0.00 0.00 2.41
3198 5253 5.972935 TCATCACTCGTACCAACATTACAT 58.027 37.500 0.00 0.00 0.00 2.29
3199 5254 7.102847 TCATCACTCGTACCAACATTACATA 57.897 36.000 0.00 0.00 0.00 2.29
3200 5255 7.722363 TCATCACTCGTACCAACATTACATAT 58.278 34.615 0.00 0.00 0.00 1.78
3201 5256 8.852135 TCATCACTCGTACCAACATTACATATA 58.148 33.333 0.00 0.00 0.00 0.86
3202 5257 9.471084 CATCACTCGTACCAACATTACATATAA 57.529 33.333 0.00 0.00 0.00 0.98
3204 5259 9.687210 TCACTCGTACCAACATTACATATAATC 57.313 33.333 0.00 0.00 0.00 1.75
3205 5260 9.692749 CACTCGTACCAACATTACATATAATCT 57.307 33.333 0.00 0.00 0.00 2.40
3206 5261 9.692749 ACTCGTACCAACATTACATATAATCTG 57.307 33.333 0.00 0.00 0.00 2.90
3207 5262 8.528917 TCGTACCAACATTACATATAATCTGC 57.471 34.615 0.00 0.00 0.00 4.26
3208 5263 7.327518 TCGTACCAACATTACATATAATCTGCG 59.672 37.037 0.00 0.00 0.00 5.18
3209 5264 6.801539 ACCAACATTACATATAATCTGCGG 57.198 37.500 0.00 0.00 0.00 5.69
3210 5265 6.296026 ACCAACATTACATATAATCTGCGGT 58.704 36.000 0.00 0.00 0.00 5.68
3211 5266 6.204688 ACCAACATTACATATAATCTGCGGTG 59.795 38.462 0.00 0.00 0.00 4.94
3212 5267 6.426633 CCAACATTACATATAATCTGCGGTGA 59.573 38.462 0.00 0.00 0.00 4.02
3213 5268 7.041440 CCAACATTACATATAATCTGCGGTGAA 60.041 37.037 0.00 0.00 0.00 3.18
3214 5269 8.341903 CAACATTACATATAATCTGCGGTGAAA 58.658 33.333 0.00 0.00 0.00 2.69
3215 5270 8.087982 ACATTACATATAATCTGCGGTGAAAG 57.912 34.615 0.00 0.00 0.00 2.62
3216 5271 7.931407 ACATTACATATAATCTGCGGTGAAAGA 59.069 33.333 0.00 0.00 0.00 2.52
3217 5272 8.773645 CATTACATATAATCTGCGGTGAAAGAA 58.226 33.333 0.00 0.00 0.00 2.52
3218 5273 6.851222 ACATATAATCTGCGGTGAAAGAAG 57.149 37.500 0.00 0.00 0.00 2.85
3219 5274 6.582636 ACATATAATCTGCGGTGAAAGAAGA 58.417 36.000 0.00 0.00 0.00 2.87
3220 5275 7.047891 ACATATAATCTGCGGTGAAAGAAGAA 58.952 34.615 0.00 0.00 0.00 2.52
3221 5276 7.225538 ACATATAATCTGCGGTGAAAGAAGAAG 59.774 37.037 0.00 0.00 0.00 2.85
3222 5277 1.512926 TCTGCGGTGAAAGAAGAAGC 58.487 50.000 0.00 0.00 0.00 3.86
3223 5278 1.202639 TCTGCGGTGAAAGAAGAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
3224 5279 1.603802 CTGCGGTGAAAGAAGAAGCAA 59.396 47.619 0.00 0.00 32.53 3.91
3225 5280 2.227388 CTGCGGTGAAAGAAGAAGCAAT 59.773 45.455 0.00 0.00 32.53 3.56
3226 5281 2.226437 TGCGGTGAAAGAAGAAGCAATC 59.774 45.455 0.00 0.00 0.00 2.67
3227 5282 2.226437 GCGGTGAAAGAAGAAGCAATCA 59.774 45.455 0.00 0.00 0.00 2.57
3228 5283 3.814945 CGGTGAAAGAAGAAGCAATCAC 58.185 45.455 0.00 0.00 37.14 3.06
3229 5284 3.250762 CGGTGAAAGAAGAAGCAATCACA 59.749 43.478 6.12 0.00 39.06 3.58
3230 5285 4.540824 GGTGAAAGAAGAAGCAATCACAC 58.459 43.478 6.12 0.00 39.06 3.82
3231 5286 4.036734 GGTGAAAGAAGAAGCAATCACACA 59.963 41.667 6.12 0.00 39.06 3.72
3232 5287 5.450412 GGTGAAAGAAGAAGCAATCACACAA 60.450 40.000 6.12 0.00 39.06 3.33
3233 5288 6.035843 GTGAAAGAAGAAGCAATCACACAAA 58.964 36.000 0.00 0.00 37.65 2.83
3234 5289 6.531240 GTGAAAGAAGAAGCAATCACACAAAA 59.469 34.615 0.00 0.00 37.65 2.44
3235 5290 7.063308 GTGAAAGAAGAAGCAATCACACAAAAA 59.937 33.333 0.00 0.00 37.65 1.94
3252 5307 2.479566 AAAAGCGGAGAGAGCATTCA 57.520 45.000 0.00 0.00 37.01 2.57
3253 5308 2.706339 AAAGCGGAGAGAGCATTCAT 57.294 45.000 0.00 0.00 37.01 2.57
3254 5309 3.827008 AAAGCGGAGAGAGCATTCATA 57.173 42.857 0.00 0.00 37.01 2.15
3255 5310 2.810439 AGCGGAGAGAGCATTCATAC 57.190 50.000 0.00 0.00 37.01 2.39
3256 5311 1.342819 AGCGGAGAGAGCATTCATACC 59.657 52.381 0.00 0.00 37.01 2.73
3257 5312 1.069204 GCGGAGAGAGCATTCATACCA 59.931 52.381 0.00 0.00 34.19 3.25
3258 5313 2.748605 CGGAGAGAGCATTCATACCAC 58.251 52.381 0.00 0.00 0.00 4.16
3259 5314 2.546795 CGGAGAGAGCATTCATACCACC 60.547 54.545 0.00 0.00 0.00 4.61
3260 5315 2.546795 GGAGAGAGCATTCATACCACCG 60.547 54.545 0.00 0.00 0.00 4.94
3261 5316 1.414181 AGAGAGCATTCATACCACCGG 59.586 52.381 0.00 0.00 0.00 5.28
3262 5317 1.412710 GAGAGCATTCATACCACCGGA 59.587 52.381 9.46 0.00 0.00 5.14
3263 5318 1.414181 AGAGCATTCATACCACCGGAG 59.586 52.381 9.46 0.00 0.00 4.63
3264 5319 0.179045 AGCATTCATACCACCGGAGC 60.179 55.000 9.46 0.00 0.00 4.70
3265 5320 0.463654 GCATTCATACCACCGGAGCA 60.464 55.000 9.46 0.00 0.00 4.26
3266 5321 1.815408 GCATTCATACCACCGGAGCAT 60.815 52.381 9.46 0.00 0.00 3.79
3267 5322 2.146342 CATTCATACCACCGGAGCATC 58.854 52.381 9.46 0.00 0.00 3.91
3268 5323 1.199615 TTCATACCACCGGAGCATCA 58.800 50.000 9.46 0.00 36.25 3.07
3269 5324 1.199615 TCATACCACCGGAGCATCAA 58.800 50.000 9.46 0.00 36.25 2.57
3270 5325 1.134521 TCATACCACCGGAGCATCAAC 60.135 52.381 9.46 0.00 36.25 3.18
3271 5326 0.908910 ATACCACCGGAGCATCAACA 59.091 50.000 9.46 0.00 36.25 3.33
3272 5327 0.908910 TACCACCGGAGCATCAACAT 59.091 50.000 9.46 0.00 36.25 2.71
3273 5328 0.392998 ACCACCGGAGCATCAACATC 60.393 55.000 9.46 0.00 36.25 3.06
3274 5329 0.107508 CCACCGGAGCATCAACATCT 60.108 55.000 9.46 0.00 36.25 2.90
3275 5330 1.679944 CCACCGGAGCATCAACATCTT 60.680 52.381 9.46 0.00 36.25 2.40
3276 5331 1.667724 CACCGGAGCATCAACATCTTC 59.332 52.381 9.46 0.00 36.25 2.87
3277 5332 1.556911 ACCGGAGCATCAACATCTTCT 59.443 47.619 9.46 0.00 36.25 2.85
3278 5333 1.938577 CCGGAGCATCAACATCTTCTG 59.061 52.381 0.00 0.00 36.25 3.02
3279 5334 1.329906 CGGAGCATCAACATCTTCTGC 59.670 52.381 0.00 0.00 36.25 4.26
3280 5335 2.641305 GGAGCATCAACATCTTCTGCT 58.359 47.619 0.00 0.00 45.32 4.24
3282 5337 2.277969 AGCATCAACATCTTCTGCTCG 58.722 47.619 0.00 0.00 38.78 5.03
3283 5338 1.329906 GCATCAACATCTTCTGCTCGG 59.670 52.381 0.00 0.00 0.00 4.63
3284 5339 2.897436 CATCAACATCTTCTGCTCGGA 58.103 47.619 0.00 0.00 0.00 4.55
3285 5340 2.370281 TCAACATCTTCTGCTCGGAC 57.630 50.000 0.00 0.00 0.00 4.79
3286 5341 1.618343 TCAACATCTTCTGCTCGGACA 59.382 47.619 0.00 0.00 0.00 4.02
3287 5342 2.234661 TCAACATCTTCTGCTCGGACAT 59.765 45.455 0.00 0.00 0.00 3.06
3288 5343 2.593346 ACATCTTCTGCTCGGACATC 57.407 50.000 0.00 0.00 0.00 3.06
3289 5344 2.106566 ACATCTTCTGCTCGGACATCT 58.893 47.619 0.00 0.00 0.00 2.90
3290 5345 2.159128 ACATCTTCTGCTCGGACATCTG 60.159 50.000 0.00 0.00 0.00 2.90
3291 5346 0.174389 TCTTCTGCTCGGACATCTGC 59.826 55.000 0.00 0.00 0.00 4.26
3292 5347 0.108472 CTTCTGCTCGGACATCTGCA 60.108 55.000 0.00 0.00 0.00 4.41
3293 5348 0.390340 TTCTGCTCGGACATCTGCAC 60.390 55.000 0.00 0.00 0.00 4.57
3294 5349 2.125952 TGCTCGGACATCTGCACG 60.126 61.111 0.00 0.00 0.00 5.34
3295 5350 2.887568 GCTCGGACATCTGCACGG 60.888 66.667 0.00 0.00 0.00 4.94
3296 5351 2.885113 CTCGGACATCTGCACGGA 59.115 61.111 0.00 0.00 0.00 4.69
3297 5352 1.439228 CTCGGACATCTGCACGGAT 59.561 57.895 0.00 0.00 0.00 4.18
3298 5353 0.596083 CTCGGACATCTGCACGGATC 60.596 60.000 0.00 0.00 0.00 3.36
3299 5354 1.946156 CGGACATCTGCACGGATCG 60.946 63.158 0.00 0.00 0.00 3.69
3300 5355 2.240500 GGACATCTGCACGGATCGC 61.241 63.158 0.00 0.00 0.00 4.58
3301 5356 1.227089 GACATCTGCACGGATCGCT 60.227 57.895 0.00 0.00 0.00 4.93
3302 5357 1.211818 GACATCTGCACGGATCGCTC 61.212 60.000 0.00 0.00 0.00 5.03
3303 5358 1.227060 CATCTGCACGGATCGCTCA 60.227 57.895 0.00 0.00 0.00 4.26
3304 5359 0.807275 CATCTGCACGGATCGCTCAA 60.807 55.000 0.00 0.00 0.00 3.02
3305 5360 0.807667 ATCTGCACGGATCGCTCAAC 60.808 55.000 0.00 0.00 0.00 3.18
3306 5361 1.737735 CTGCACGGATCGCTCAACA 60.738 57.895 0.00 0.00 0.00 3.33
3307 5362 1.291184 CTGCACGGATCGCTCAACAA 61.291 55.000 0.00 0.00 0.00 2.83
3308 5363 0.673333 TGCACGGATCGCTCAACAAT 60.673 50.000 0.00 0.00 0.00 2.71
3309 5364 0.247814 GCACGGATCGCTCAACAATG 60.248 55.000 0.00 0.00 0.00 2.82
3310 5365 0.374758 CACGGATCGCTCAACAATGG 59.625 55.000 0.00 0.00 0.00 3.16
3311 5366 1.353103 CGGATCGCTCAACAATGGC 59.647 57.895 0.00 0.00 0.00 4.40
3312 5367 1.353103 GGATCGCTCAACAATGGCG 59.647 57.895 0.00 0.00 43.24 5.69
3313 5368 1.353103 GATCGCTCAACAATGGCGG 59.647 57.895 6.72 0.00 42.60 6.13
3314 5369 1.078497 ATCGCTCAACAATGGCGGA 60.078 52.632 6.72 0.00 42.60 5.54
3315 5370 0.676466 ATCGCTCAACAATGGCGGAA 60.676 50.000 6.72 0.00 42.60 4.30
3316 5371 1.154225 CGCTCAACAATGGCGGAAC 60.154 57.895 0.00 0.00 40.35 3.62
3317 5372 1.212751 GCTCAACAATGGCGGAACC 59.787 57.895 0.00 0.00 39.84 3.62
3318 5373 1.244019 GCTCAACAATGGCGGAACCT 61.244 55.000 0.00 0.00 40.22 3.50
3319 5374 1.948611 GCTCAACAATGGCGGAACCTA 60.949 52.381 0.00 0.00 40.22 3.08
3320 5375 1.737793 CTCAACAATGGCGGAACCTAC 59.262 52.381 0.00 0.00 40.22 3.18
3321 5376 0.446222 CAACAATGGCGGAACCTACG 59.554 55.000 0.00 0.00 40.22 3.51
3322 5377 0.322322 AACAATGGCGGAACCTACGA 59.678 50.000 0.00 0.00 40.22 3.43
3323 5378 0.322322 ACAATGGCGGAACCTACGAA 59.678 50.000 0.00 0.00 40.22 3.85
3324 5379 1.006832 CAATGGCGGAACCTACGAAG 58.993 55.000 0.00 0.00 40.22 3.79
3325 5380 0.743345 AATGGCGGAACCTACGAAGC 60.743 55.000 0.00 0.00 40.22 3.86
3326 5381 1.895020 ATGGCGGAACCTACGAAGCA 61.895 55.000 0.00 0.00 40.22 3.91
3327 5382 2.098831 GGCGGAACCTACGAAGCAC 61.099 63.158 0.00 0.00 34.51 4.40
3328 5383 1.080025 GCGGAACCTACGAAGCACT 60.080 57.895 0.00 0.00 0.00 4.40
3329 5384 1.352156 GCGGAACCTACGAAGCACTG 61.352 60.000 0.00 0.00 0.00 3.66
3330 5385 0.242825 CGGAACCTACGAAGCACTGA 59.757 55.000 0.00 0.00 0.00 3.41
3331 5386 1.135083 CGGAACCTACGAAGCACTGAT 60.135 52.381 0.00 0.00 0.00 2.90
3332 5387 2.098607 CGGAACCTACGAAGCACTGATA 59.901 50.000 0.00 0.00 0.00 2.15
3333 5388 3.445857 GGAACCTACGAAGCACTGATAC 58.554 50.000 0.00 0.00 0.00 2.24
3334 5389 2.846039 ACCTACGAAGCACTGATACG 57.154 50.000 0.00 0.00 0.00 3.06
3335 5390 1.404391 ACCTACGAAGCACTGATACGG 59.596 52.381 0.00 0.00 0.00 4.02
3336 5391 1.478137 CTACGAAGCACTGATACGGC 58.522 55.000 0.00 0.00 0.00 5.68
3337 5392 0.101759 TACGAAGCACTGATACGGCC 59.898 55.000 0.00 0.00 0.00 6.13
3338 5393 1.153647 CGAAGCACTGATACGGCCA 60.154 57.895 2.24 0.00 0.00 5.36
3339 5394 0.739462 CGAAGCACTGATACGGCCAA 60.739 55.000 2.24 0.00 0.00 4.52
3340 5395 1.448985 GAAGCACTGATACGGCCAAA 58.551 50.000 2.24 0.00 0.00 3.28
3341 5396 1.810151 GAAGCACTGATACGGCCAAAA 59.190 47.619 2.24 0.00 0.00 2.44
3342 5397 1.165270 AGCACTGATACGGCCAAAAC 58.835 50.000 2.24 0.00 0.00 2.43
3343 5398 1.165270 GCACTGATACGGCCAAAACT 58.835 50.000 2.24 0.00 0.00 2.66
3344 5399 1.135689 GCACTGATACGGCCAAAACTG 60.136 52.381 2.24 0.00 0.00 3.16
3345 5400 1.468520 CACTGATACGGCCAAAACTGG 59.531 52.381 2.24 0.00 0.00 4.00
3346 5401 1.073284 ACTGATACGGCCAAAACTGGT 59.927 47.619 2.24 0.00 0.00 4.00
3347 5402 1.468520 CTGATACGGCCAAAACTGGTG 59.531 52.381 2.24 0.00 0.00 4.17
3348 5403 1.202830 TGATACGGCCAAAACTGGTGT 60.203 47.619 2.24 0.00 0.00 4.16
3349 5404 2.038689 TGATACGGCCAAAACTGGTGTA 59.961 45.455 2.24 0.00 0.00 2.90
3350 5405 2.863132 TACGGCCAAAACTGGTGTAT 57.137 45.000 2.24 0.00 0.00 2.29
3351 5406 1.530323 ACGGCCAAAACTGGTGTATC 58.470 50.000 2.24 0.00 0.00 2.24
3352 5407 0.446222 CGGCCAAAACTGGTGTATCG 59.554 55.000 2.24 0.00 0.00 2.92
3353 5408 0.808755 GGCCAAAACTGGTGTATCGG 59.191 55.000 0.00 0.00 0.00 4.18
3354 5409 0.170339 GCCAAAACTGGTGTATCGGC 59.830 55.000 0.00 0.00 0.00 5.54
3355 5410 1.529226 CCAAAACTGGTGTATCGGCA 58.471 50.000 0.00 0.00 0.00 5.69
3356 5411 2.091541 CCAAAACTGGTGTATCGGCAT 58.908 47.619 0.00 0.00 0.00 4.40
3357 5412 3.275143 CCAAAACTGGTGTATCGGCATA 58.725 45.455 0.00 0.00 0.00 3.14
3358 5413 3.064820 CCAAAACTGGTGTATCGGCATAC 59.935 47.826 0.00 0.00 36.18 2.39
3359 5414 3.906720 AAACTGGTGTATCGGCATACT 57.093 42.857 8.04 0.00 36.55 2.12
3360 5415 2.890808 ACTGGTGTATCGGCATACTG 57.109 50.000 8.04 0.00 36.55 2.74
3361 5416 1.202533 ACTGGTGTATCGGCATACTGC 60.203 52.381 8.04 0.00 44.08 4.40
3370 5425 2.628106 GCATACTGCATGTCGCCG 59.372 61.111 0.00 0.00 44.26 6.46
3371 5426 1.882625 GCATACTGCATGTCGCCGA 60.883 57.895 0.00 0.00 44.26 5.54
3372 5427 1.224069 GCATACTGCATGTCGCCGAT 61.224 55.000 0.00 0.00 44.26 4.18
3373 5428 1.934849 GCATACTGCATGTCGCCGATA 60.935 52.381 0.00 0.00 44.26 2.92
3374 5429 1.721389 CATACTGCATGTCGCCGATAC 59.279 52.381 0.00 0.00 41.33 2.24
3375 5430 1.029681 TACTGCATGTCGCCGATACT 58.970 50.000 0.00 0.00 41.33 2.12
3376 5431 0.249073 ACTGCATGTCGCCGATACTC 60.249 55.000 0.00 0.00 41.33 2.59
3377 5432 0.941463 CTGCATGTCGCCGATACTCC 60.941 60.000 0.00 0.00 41.33 3.85
3378 5433 2.016704 GCATGTCGCCGATACTCCG 61.017 63.158 0.00 0.00 32.94 4.63
3379 5434 1.652563 CATGTCGCCGATACTCCGA 59.347 57.895 0.00 0.00 0.00 4.55
3380 5435 0.241213 CATGTCGCCGATACTCCGAT 59.759 55.000 0.00 0.00 33.24 4.18
3381 5436 1.467342 CATGTCGCCGATACTCCGATA 59.533 52.381 0.00 0.00 33.24 2.92
3382 5437 0.870393 TGTCGCCGATACTCCGATAC 59.130 55.000 0.00 0.00 33.24 2.24
3383 5438 0.179230 GTCGCCGATACTCCGATACG 60.179 60.000 0.00 0.00 33.24 3.06
3384 5439 1.511464 CGCCGATACTCCGATACGC 60.511 63.158 0.00 0.00 0.00 4.42
3385 5440 1.577922 GCCGATACTCCGATACGCA 59.422 57.895 0.00 0.00 0.00 5.24
3386 5441 0.454620 GCCGATACTCCGATACGCAG 60.455 60.000 0.00 0.00 0.00 5.18
3387 5442 0.168348 CCGATACTCCGATACGCAGG 59.832 60.000 0.00 0.00 0.00 4.85
3388 5443 1.154197 CGATACTCCGATACGCAGGA 58.846 55.000 0.00 0.00 34.93 3.86
3389 5444 1.738350 CGATACTCCGATACGCAGGAT 59.262 52.381 0.00 0.00 35.75 3.24
3390 5445 2.934553 CGATACTCCGATACGCAGGATA 59.065 50.000 0.00 0.00 35.75 2.59
3391 5446 3.242349 CGATACTCCGATACGCAGGATAC 60.242 52.174 0.00 0.00 35.75 2.24
3392 5447 0.873054 ACTCCGATACGCAGGATACG 59.127 55.000 0.00 0.00 46.39 3.06
3393 5448 0.168348 CTCCGATACGCAGGATACGG 59.832 60.000 0.00 0.00 46.39 4.02
3405 5460 2.413112 CAGGATACGGCTTCAATATGCG 59.587 50.000 0.00 0.00 46.39 4.73
3406 5461 2.037251 AGGATACGGCTTCAATATGCGT 59.963 45.455 0.00 0.00 46.39 5.24
3407 5462 3.257375 AGGATACGGCTTCAATATGCGTA 59.743 43.478 0.00 0.00 46.39 4.42
3408 5463 4.081642 AGGATACGGCTTCAATATGCGTAT 60.082 41.667 0.00 0.00 46.39 3.06
3409 5464 4.267928 GGATACGGCTTCAATATGCGTATC 59.732 45.833 5.61 5.61 40.47 2.24
3410 5465 2.413837 ACGGCTTCAATATGCGTATCC 58.586 47.619 0.00 0.00 0.00 2.59
3411 5466 1.732259 CGGCTTCAATATGCGTATCCC 59.268 52.381 0.00 0.00 0.00 3.85
3412 5467 2.778299 GGCTTCAATATGCGTATCCCA 58.222 47.619 0.00 0.00 0.00 4.37
3413 5468 2.744202 GGCTTCAATATGCGTATCCCAG 59.256 50.000 0.00 0.00 0.00 4.45
3414 5469 2.744202 GCTTCAATATGCGTATCCCAGG 59.256 50.000 0.00 0.00 0.00 4.45
3415 5470 3.557054 GCTTCAATATGCGTATCCCAGGA 60.557 47.826 0.00 0.00 0.00 3.86
3416 5471 3.961480 TCAATATGCGTATCCCAGGAG 57.039 47.619 0.00 0.00 0.00 3.69
3417 5472 3.239449 TCAATATGCGTATCCCAGGAGT 58.761 45.455 0.00 0.00 0.00 3.85
3418 5473 4.412843 TCAATATGCGTATCCCAGGAGTA 58.587 43.478 0.00 0.00 0.00 2.59
3419 5474 5.023452 TCAATATGCGTATCCCAGGAGTAT 58.977 41.667 0.00 0.00 0.00 2.12
3420 5475 5.127194 TCAATATGCGTATCCCAGGAGTATC 59.873 44.000 0.00 0.00 0.00 2.24
3421 5476 2.677542 TGCGTATCCCAGGAGTATCT 57.322 50.000 0.00 0.00 33.73 1.98
3422 5477 2.515854 TGCGTATCCCAGGAGTATCTC 58.484 52.381 0.00 0.00 33.73 2.75
3423 5478 2.158519 TGCGTATCCCAGGAGTATCTCA 60.159 50.000 0.00 0.00 33.73 3.27
3424 5479 2.891580 GCGTATCCCAGGAGTATCTCAA 59.108 50.000 0.00 0.00 33.73 3.02
3425 5480 3.511934 GCGTATCCCAGGAGTATCTCAAT 59.488 47.826 0.00 0.00 33.73 2.57
3426 5481 4.021016 GCGTATCCCAGGAGTATCTCAATT 60.021 45.833 0.00 0.00 33.73 2.32
3427 5482 5.511545 GCGTATCCCAGGAGTATCTCAATTT 60.512 44.000 0.00 0.00 33.73 1.82
3428 5483 6.525629 CGTATCCCAGGAGTATCTCAATTTT 58.474 40.000 0.00 0.00 33.73 1.82
3429 5484 6.992715 CGTATCCCAGGAGTATCTCAATTTTT 59.007 38.462 0.00 0.00 33.73 1.94
3430 5485 7.041780 CGTATCCCAGGAGTATCTCAATTTTTG 60.042 40.741 0.00 0.00 33.73 2.44
3431 5486 6.387192 TCCCAGGAGTATCTCAATTTTTGA 57.613 37.500 0.00 0.00 38.17 2.69
3432 5487 6.973642 TCCCAGGAGTATCTCAATTTTTGAT 58.026 36.000 0.00 0.00 39.30 2.57
3433 5488 7.413446 TCCCAGGAGTATCTCAATTTTTGATT 58.587 34.615 0.00 0.00 39.30 2.57
3434 5489 7.895429 TCCCAGGAGTATCTCAATTTTTGATTT 59.105 33.333 0.00 0.00 39.30 2.17
3435 5490 9.189156 CCCAGGAGTATCTCAATTTTTGATTTA 57.811 33.333 0.00 0.00 39.30 1.40
3462 5517 8.959734 AAAGAAAGAAAAATAAACCCGATACG 57.040 30.769 0.00 0.00 0.00 3.06
3463 5518 6.549061 AGAAAGAAAAATAAACCCGATACGC 58.451 36.000 0.00 0.00 0.00 4.42
3464 5519 5.883503 AAGAAAAATAAACCCGATACGCA 57.116 34.783 0.00 0.00 0.00 5.24
3465 5520 5.225899 AGAAAAATAAACCCGATACGCAC 57.774 39.130 0.00 0.00 0.00 5.34
3466 5521 4.939439 AGAAAAATAAACCCGATACGCACT 59.061 37.500 0.00 0.00 0.00 4.40
3467 5522 4.609691 AAAATAAACCCGATACGCACTG 57.390 40.909 0.00 0.00 0.00 3.66
3468 5523 2.973694 ATAAACCCGATACGCACTGT 57.026 45.000 0.00 0.00 0.00 3.55
3469 5524 1.999048 TAAACCCGATACGCACTGTG 58.001 50.000 2.76 2.76 0.00 3.66
3470 5525 0.672401 AAACCCGATACGCACTGTGG 60.672 55.000 10.21 2.45 0.00 4.17
3471 5526 1.537814 AACCCGATACGCACTGTGGA 61.538 55.000 10.21 0.00 0.00 4.02
3472 5527 1.226974 CCCGATACGCACTGTGGAG 60.227 63.158 10.21 0.00 0.00 3.86
3473 5528 1.663379 CCCGATACGCACTGTGGAGA 61.663 60.000 10.21 0.00 0.00 3.71
3474 5529 0.385751 CCGATACGCACTGTGGAGAT 59.614 55.000 10.21 0.24 0.00 2.75
3475 5530 1.481240 CGATACGCACTGTGGAGATG 58.519 55.000 10.21 0.00 0.00 2.90
3476 5531 1.858091 GATACGCACTGTGGAGATGG 58.142 55.000 10.21 0.00 0.00 3.51
3477 5532 1.137086 GATACGCACTGTGGAGATGGT 59.863 52.381 10.21 0.00 0.00 3.55
3478 5533 0.246360 TACGCACTGTGGAGATGGTG 59.754 55.000 10.21 0.00 0.00 4.17
3479 5534 1.742880 CGCACTGTGGAGATGGTGG 60.743 63.158 10.21 0.00 0.00 4.61
3480 5535 1.377725 GCACTGTGGAGATGGTGGG 60.378 63.158 10.21 0.00 0.00 4.61
3481 5536 1.841302 GCACTGTGGAGATGGTGGGA 61.841 60.000 10.21 0.00 0.00 4.37
3482 5537 0.914644 CACTGTGGAGATGGTGGGAT 59.085 55.000 0.00 0.00 0.00 3.85
3483 5538 2.118679 CACTGTGGAGATGGTGGGATA 58.881 52.381 0.00 0.00 0.00 2.59
3484 5539 2.119495 ACTGTGGAGATGGTGGGATAC 58.881 52.381 0.00 0.00 0.00 2.24
3485 5540 1.069204 CTGTGGAGATGGTGGGATACG 59.931 57.143 0.00 0.00 37.60 3.06
3486 5541 0.393077 GTGGAGATGGTGGGATACGG 59.607 60.000 0.00 0.00 37.60 4.02
3487 5542 0.762842 TGGAGATGGTGGGATACGGG 60.763 60.000 0.00 0.00 37.60 5.28
3488 5543 0.471211 GGAGATGGTGGGATACGGGA 60.471 60.000 0.00 0.00 37.60 5.14
3489 5544 1.420430 GAGATGGTGGGATACGGGAA 58.580 55.000 0.00 0.00 37.60 3.97
3490 5545 1.344763 GAGATGGTGGGATACGGGAAG 59.655 57.143 0.00 0.00 37.60 3.46
3491 5546 0.396811 GATGGTGGGATACGGGAAGG 59.603 60.000 0.00 0.00 37.60 3.46
3492 5547 0.030501 ATGGTGGGATACGGGAAGGA 60.031 55.000 0.00 0.00 37.60 3.36
3493 5548 0.979187 TGGTGGGATACGGGAAGGAC 60.979 60.000 0.00 0.00 37.60 3.85
3494 5549 0.979187 GGTGGGATACGGGAAGGACA 60.979 60.000 0.00 0.00 37.60 4.02
3495 5550 1.129058 GTGGGATACGGGAAGGACAT 58.871 55.000 0.00 0.00 37.60 3.06
3496 5551 1.128200 TGGGATACGGGAAGGACATG 58.872 55.000 0.00 0.00 37.60 3.21
3497 5552 0.396811 GGGATACGGGAAGGACATGG 59.603 60.000 0.00 0.00 37.60 3.66
3498 5553 0.250338 GGATACGGGAAGGACATGGC 60.250 60.000 0.00 0.00 0.00 4.40
3499 5554 0.468226 GATACGGGAAGGACATGGCA 59.532 55.000 0.00 0.00 0.00 4.92
3500 5555 0.916086 ATACGGGAAGGACATGGCAA 59.084 50.000 0.00 0.00 0.00 4.52
3501 5556 0.251916 TACGGGAAGGACATGGCAAG 59.748 55.000 0.00 0.00 0.00 4.01
3502 5557 2.409870 CGGGAAGGACATGGCAAGC 61.410 63.158 0.00 0.00 0.00 4.01
3503 5558 2.409870 GGGAAGGACATGGCAAGCG 61.410 63.158 0.00 0.00 0.00 4.68
3504 5559 1.675641 GGAAGGACATGGCAAGCGT 60.676 57.895 0.00 0.00 0.00 5.07
3505 5560 1.244019 GGAAGGACATGGCAAGCGTT 61.244 55.000 0.00 0.00 0.00 4.84
3506 5561 0.109597 GAAGGACATGGCAAGCGTTG 60.110 55.000 0.00 0.00 0.00 4.10
3525 5580 3.399181 CAGCCCCGAGCCCAGTAA 61.399 66.667 0.00 0.00 45.47 2.24
3526 5581 3.083997 AGCCCCGAGCCCAGTAAG 61.084 66.667 0.00 0.00 45.47 2.34
3527 5582 3.081409 GCCCCGAGCCCAGTAAGA 61.081 66.667 0.00 0.00 34.35 2.10
3528 5583 2.666098 GCCCCGAGCCCAGTAAGAA 61.666 63.158 0.00 0.00 34.35 2.52
3529 5584 1.522569 CCCCGAGCCCAGTAAGAAG 59.477 63.158 0.00 0.00 0.00 2.85
3530 5585 1.153349 CCCGAGCCCAGTAAGAAGC 60.153 63.158 0.00 0.00 0.00 3.86
3531 5586 1.153349 CCGAGCCCAGTAAGAAGCC 60.153 63.158 0.00 0.00 0.00 4.35
3532 5587 1.153349 CGAGCCCAGTAAGAAGCCC 60.153 63.158 0.00 0.00 0.00 5.19
3533 5588 1.899437 CGAGCCCAGTAAGAAGCCCA 61.899 60.000 0.00 0.00 0.00 5.36
3534 5589 0.393132 GAGCCCAGTAAGAAGCCCAC 60.393 60.000 0.00 0.00 0.00 4.61
3535 5590 1.745489 GCCCAGTAAGAAGCCCACG 60.745 63.158 0.00 0.00 0.00 4.94
3536 5591 1.980052 CCCAGTAAGAAGCCCACGA 59.020 57.895 0.00 0.00 0.00 4.35
3537 5592 0.108138 CCCAGTAAGAAGCCCACGAG 60.108 60.000 0.00 0.00 0.00 4.18
3538 5593 0.741221 CCAGTAAGAAGCCCACGAGC 60.741 60.000 0.00 0.00 0.00 5.03
3540 5595 1.476891 CAGTAAGAAGCCCACGAGCTA 59.523 52.381 0.00 0.00 44.11 3.32
3541 5596 2.094182 CAGTAAGAAGCCCACGAGCTAA 60.094 50.000 0.00 0.00 44.11 3.09
3542 5597 2.094130 AGTAAGAAGCCCACGAGCTAAC 60.094 50.000 0.00 0.00 44.11 2.34
3543 5598 0.036294 AAGAAGCCCACGAGCTAACC 60.036 55.000 0.00 0.00 44.11 2.85
3544 5599 1.449778 GAAGCCCACGAGCTAACCC 60.450 63.158 0.00 0.00 44.11 4.11
3545 5600 1.900545 GAAGCCCACGAGCTAACCCT 61.901 60.000 0.00 0.00 44.11 4.34
3546 5601 0.616679 AAGCCCACGAGCTAACCCTA 60.617 55.000 0.00 0.00 44.11 3.53
3547 5602 0.616679 AGCCCACGAGCTAACCCTAA 60.617 55.000 0.00 0.00 42.70 2.69
3548 5603 0.461516 GCCCACGAGCTAACCCTAAC 60.462 60.000 0.00 0.00 0.00 2.34
3549 5604 0.899720 CCCACGAGCTAACCCTAACA 59.100 55.000 0.00 0.00 0.00 2.41
3550 5605 1.485066 CCCACGAGCTAACCCTAACAT 59.515 52.381 0.00 0.00 0.00 2.71
3551 5606 2.093128 CCCACGAGCTAACCCTAACATT 60.093 50.000 0.00 0.00 0.00 2.71
3552 5607 3.606687 CCACGAGCTAACCCTAACATTT 58.393 45.455 0.00 0.00 0.00 2.32
3553 5608 3.374058 CCACGAGCTAACCCTAACATTTG 59.626 47.826 0.00 0.00 0.00 2.32
3554 5609 3.007635 ACGAGCTAACCCTAACATTTGC 58.992 45.455 0.00 0.00 0.00 3.68
3555 5610 3.270877 CGAGCTAACCCTAACATTTGCT 58.729 45.455 0.00 0.00 39.17 3.91
3556 5611 3.309954 CGAGCTAACCCTAACATTTGCTC 59.690 47.826 9.43 9.43 44.82 4.26
3557 5612 4.518249 GAGCTAACCCTAACATTTGCTCT 58.482 43.478 11.46 0.00 44.84 4.09
3558 5613 4.518249 AGCTAACCCTAACATTTGCTCTC 58.482 43.478 0.00 0.00 32.52 3.20
3559 5614 4.226168 AGCTAACCCTAACATTTGCTCTCT 59.774 41.667 0.00 0.00 32.52 3.10
3560 5615 4.572795 GCTAACCCTAACATTTGCTCTCTC 59.427 45.833 0.00 0.00 0.00 3.20
3561 5616 4.917906 AACCCTAACATTTGCTCTCTCT 57.082 40.909 0.00 0.00 0.00 3.10
3562 5617 4.479786 ACCCTAACATTTGCTCTCTCTC 57.520 45.455 0.00 0.00 0.00 3.20
3563 5618 3.198853 ACCCTAACATTTGCTCTCTCTCC 59.801 47.826 0.00 0.00 0.00 3.71
3564 5619 3.454082 CCCTAACATTTGCTCTCTCTCCT 59.546 47.826 0.00 0.00 0.00 3.69
3565 5620 4.442753 CCCTAACATTTGCTCTCTCTCCTC 60.443 50.000 0.00 0.00 0.00 3.71
3566 5621 4.405358 CCTAACATTTGCTCTCTCTCCTCT 59.595 45.833 0.00 0.00 0.00 3.69
3567 5622 4.470334 AACATTTGCTCTCTCTCCTCTC 57.530 45.455 0.00 0.00 0.00 3.20
3568 5623 3.711863 ACATTTGCTCTCTCTCCTCTCT 58.288 45.455 0.00 0.00 0.00 3.10
3569 5624 3.448301 ACATTTGCTCTCTCTCCTCTCTG 59.552 47.826 0.00 0.00 0.00 3.35
3570 5625 2.897271 TTGCTCTCTCTCCTCTCTGT 57.103 50.000 0.00 0.00 0.00 3.41
3571 5626 4.308526 TTTGCTCTCTCTCCTCTCTGTA 57.691 45.455 0.00 0.00 0.00 2.74
3572 5627 4.518278 TTGCTCTCTCTCCTCTCTGTAT 57.482 45.455 0.00 0.00 0.00 2.29
3573 5628 4.085357 TGCTCTCTCTCCTCTCTGTATC 57.915 50.000 0.00 0.00 0.00 2.24
3574 5629 3.067106 GCTCTCTCTCCTCTCTGTATCG 58.933 54.545 0.00 0.00 0.00 2.92
3575 5630 3.664107 CTCTCTCTCCTCTCTGTATCGG 58.336 54.545 0.00 0.00 0.00 4.18
3576 5631 2.370519 TCTCTCTCCTCTCTGTATCGGG 59.629 54.545 0.00 0.00 0.00 5.14
3577 5632 1.202830 TCTCTCCTCTCTGTATCGGGC 60.203 57.143 0.00 0.00 0.00 6.13
3578 5633 0.535328 TCTCCTCTCTGTATCGGGCG 60.535 60.000 0.00 0.00 0.00 6.13
3579 5634 1.519751 CTCCTCTCTGTATCGGGCGG 61.520 65.000 0.00 0.00 0.00 6.13
3580 5635 2.565645 CCTCTCTGTATCGGGCGGG 61.566 68.421 0.00 0.00 0.00 6.13
3581 5636 2.520982 TCTCTGTATCGGGCGGGG 60.521 66.667 0.00 0.00 0.00 5.73
3582 5637 3.616721 CTCTGTATCGGGCGGGGG 61.617 72.222 0.00 0.00 0.00 5.40
3583 5638 4.146156 TCTGTATCGGGCGGGGGA 62.146 66.667 0.00 0.00 0.00 4.81
3584 5639 3.925090 CTGTATCGGGCGGGGGAC 61.925 72.222 0.00 0.00 0.00 4.46
3585 5640 4.468769 TGTATCGGGCGGGGGACT 62.469 66.667 0.00 0.00 0.00 3.85
3586 5641 3.925090 GTATCGGGCGGGGGACTG 61.925 72.222 0.00 0.00 40.79 3.51
3587 5642 4.468769 TATCGGGCGGGGGACTGT 62.469 66.667 0.00 0.00 39.64 3.55
3588 5643 3.072292 TATCGGGCGGGGGACTGTA 62.072 63.158 0.00 0.00 39.64 2.74
3589 5644 2.989173 TATCGGGCGGGGGACTGTAG 62.989 65.000 0.00 0.00 39.64 2.74
3591 5646 4.791069 GGGCGGGGGACTGTAGGA 62.791 72.222 0.00 0.00 39.64 2.94
3592 5647 3.155167 GGCGGGGGACTGTAGGAG 61.155 72.222 0.00 0.00 39.64 3.69
3593 5648 3.851128 GCGGGGGACTGTAGGAGC 61.851 72.222 0.00 0.00 39.64 4.70
3594 5649 3.528370 CGGGGGACTGTAGGAGCG 61.528 72.222 0.00 0.00 0.00 5.03
3595 5650 3.851128 GGGGGACTGTAGGAGCGC 61.851 72.222 0.00 0.00 0.00 5.92
3596 5651 4.208686 GGGGACTGTAGGAGCGCG 62.209 72.222 0.00 0.00 0.00 6.86
3597 5652 4.874977 GGGACTGTAGGAGCGCGC 62.875 72.222 26.66 26.66 0.00 6.86
3598 5653 4.874977 GGACTGTAGGAGCGCGCC 62.875 72.222 30.33 23.92 0.00 6.53
3642 5697 4.235762 GCCGCCTGGAATCGCCTA 62.236 66.667 0.00 0.00 37.49 3.93
3643 5698 2.029666 CCGCCTGGAATCGCCTAG 59.970 66.667 0.00 0.00 37.49 3.02
3644 5699 2.498941 CCGCCTGGAATCGCCTAGA 61.499 63.158 0.00 0.00 37.49 2.43
3645 5700 1.300233 CGCCTGGAATCGCCTAGAC 60.300 63.158 0.00 0.00 37.63 2.59
3646 5701 1.739338 CGCCTGGAATCGCCTAGACT 61.739 60.000 0.00 0.00 37.63 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 176 4.157840 GGTAAGCCTGGGACTAATTTTGTG 59.842 45.833 0.00 0.00 0.00 3.33
580 587 8.968242 GTTTGAATCCTCTTCAAAATGTTGTAC 58.032 33.333 13.07 0.00 46.16 2.90
592 599 2.484264 CCACCGTGTTTGAATCCTCTTC 59.516 50.000 0.00 0.00 0.00 2.87
599 606 0.250124 TCTCGCCACCGTGTTTGAAT 60.250 50.000 0.00 0.00 35.54 2.57
624 631 1.301293 CCCTTGCTCTCCCTTCACC 59.699 63.158 0.00 0.00 0.00 4.02
637 644 8.328758 TGCATAATATATTTCTCCCTACCCTTG 58.671 37.037 2.68 0.00 0.00 3.61
658 665 1.668826 AACCACTCCCTCCTTGCATA 58.331 50.000 0.00 0.00 0.00 3.14
663 670 5.600669 ATTTCTTTAACCACTCCCTCCTT 57.399 39.130 0.00 0.00 0.00 3.36
670 677 7.196331 GCATGGTCATATTTCTTTAACCACTC 58.804 38.462 0.00 0.00 39.43 3.51
700 707 5.263948 GTTGTTTCTTCCACTTCTTTCGTC 58.736 41.667 0.00 0.00 0.00 4.20
702 709 4.201783 ACGTTGTTTCTTCCACTTCTTTCG 60.202 41.667 0.00 0.00 0.00 3.46
724 731 7.326063 GGTGAACAAAACAATATAGTGAAGCAC 59.674 37.037 7.27 5.21 34.10 4.40
739 746 3.359654 CGTTGCTACAGGTGAACAAAAC 58.640 45.455 0.00 0.00 0.00 2.43
751 758 0.037139 AATACCCGTGCGTTGCTACA 60.037 50.000 0.00 0.00 0.00 2.74
779 786 4.164221 ACAAGGCCATGCATTACTACTAGT 59.836 41.667 8.15 0.00 29.32 2.57
780 787 4.708177 ACAAGGCCATGCATTACTACTAG 58.292 43.478 8.15 0.00 29.32 2.57
781 788 4.771114 ACAAGGCCATGCATTACTACTA 57.229 40.909 8.15 0.00 29.32 1.82
782 789 3.652057 ACAAGGCCATGCATTACTACT 57.348 42.857 8.15 0.00 29.32 2.57
783 790 6.485313 TGTATTACAAGGCCATGCATTACTAC 59.515 38.462 8.15 3.25 29.32 2.73
784 791 6.596621 TGTATTACAAGGCCATGCATTACTA 58.403 36.000 8.15 0.00 29.32 1.82
785 792 5.445069 TGTATTACAAGGCCATGCATTACT 58.555 37.500 8.15 0.00 29.32 2.24
786 793 5.766150 TGTATTACAAGGCCATGCATTAC 57.234 39.130 8.15 7.05 29.32 1.89
787 794 6.330004 CATGTATTACAAGGCCATGCATTA 57.670 37.500 8.15 0.00 29.32 1.90
788 795 5.204409 CATGTATTACAAGGCCATGCATT 57.796 39.130 8.15 0.00 30.89 3.56
809 816 2.390599 GCTTTGGATCTCGCGTGCA 61.391 57.895 5.77 0.00 0.00 4.57
817 824 1.954258 GCTTCCAGCAGCTTTGGATCT 60.954 52.381 15.61 0.00 43.87 2.75
832 839 2.550180 GGTGAGAAAGTCTTGTGCTTCC 59.450 50.000 0.00 0.00 0.00 3.46
848 855 3.641031 CATGTGCATGCATGGTGAG 57.359 52.632 25.64 7.36 41.70 3.51
870 891 6.212589 TGACCTCATTAATGGTACTGACAGAA 59.787 38.462 15.36 0.00 36.59 3.02
872 893 5.977635 TGACCTCATTAATGGTACTGACAG 58.022 41.667 15.36 0.00 36.59 3.51
928 951 6.494059 ACTGTAATCTTTTTCCATTAGGGCT 58.506 36.000 0.00 0.00 36.21 5.19
1069 1149 3.335534 GTCGTCAACTGCGGCGTT 61.336 61.111 9.37 0.00 0.00 4.84
1080 1166 1.443702 CTTGCCGTCATCGTCGTCA 60.444 57.895 0.00 0.00 35.01 4.35
1310 1399 4.530857 CCCGGCGGAAGAAGCGAT 62.531 66.667 30.79 0.00 35.00 4.58
1402 1509 0.752376 GAGGAGATCGAGACCCGGTT 60.752 60.000 0.00 0.00 39.14 4.44
1762 1875 0.178831 AGGAAGTCCCATGTTCCCCT 60.179 55.000 8.75 0.00 42.97 4.79
1815 1931 1.763968 CCAGGTCGTAGGTCATGAGA 58.236 55.000 0.00 0.00 0.00 3.27
2101 2232 2.435938 CCGCATGGGCACGTAGTT 60.436 61.111 3.80 0.00 41.61 2.24
2134 2274 2.986306 GCGGCTGCATGCAGAACTT 61.986 57.895 44.02 0.00 46.30 2.66
2163 2303 1.740296 GGTGGACTTGCGCGTGTAT 60.740 57.895 8.43 0.00 0.00 2.29
2320 2460 1.219124 GCACCTCCTCGATGCTGAA 59.781 57.895 0.73 0.00 36.40 3.02
2434 2574 2.713752 CGAACGCGTCTTTGAACGTAAG 60.714 50.000 14.44 0.00 44.38 2.34
2567 2707 1.696336 TCTGCCCATCTTCTAGCATCC 59.304 52.381 0.00 0.00 34.16 3.51
2622 2765 0.311790 CTTTGGTTGCGTGCATGACT 59.688 50.000 10.93 0.00 0.00 3.41
2623 2766 0.310543 TCTTTGGTTGCGTGCATGAC 59.689 50.000 10.93 0.00 0.00 3.06
2624 2767 1.246649 ATCTTTGGTTGCGTGCATGA 58.753 45.000 10.93 0.00 0.00 3.07
2655 4705 8.632906 AAGAATTCATCCAATTATCCAGCTAG 57.367 34.615 8.44 0.00 34.60 3.42
2693 4745 5.047235 GGTGTAGAGAGGTTACTTGACATGT 60.047 44.000 0.00 0.00 0.00 3.21
2696 4748 4.476297 TGGTGTAGAGAGGTTACTTGACA 58.524 43.478 0.00 0.00 0.00 3.58
2698 4750 4.466370 CCATGGTGTAGAGAGGTTACTTGA 59.534 45.833 2.57 0.00 0.00 3.02
2702 4754 5.416271 TTTCCATGGTGTAGAGAGGTTAC 57.584 43.478 12.58 0.00 0.00 2.50
2807 4860 8.321650 TCTGGTGGCAAATCAAATAATTTTTC 57.678 30.769 0.00 0.00 0.00 2.29
2881 4934 2.927871 GCCATGTCTCAACATTTGCCAC 60.928 50.000 0.00 0.00 43.74 5.01
2966 5019 8.322906 TCTTGTGTAAAATGAATGGACTACTG 57.677 34.615 0.00 0.00 0.00 2.74
2967 5020 9.520515 AATCTTGTGTAAAATGAATGGACTACT 57.479 29.630 0.00 0.00 0.00 2.57
2968 5021 9.559958 CAATCTTGTGTAAAATGAATGGACTAC 57.440 33.333 0.00 0.00 0.00 2.73
2969 5022 8.243426 GCAATCTTGTGTAAAATGAATGGACTA 58.757 33.333 0.00 0.00 0.00 2.59
2996 5050 9.288124 TCATGAAAATTTGATTTATAGCACGTG 57.712 29.630 12.28 12.28 0.00 4.49
2997 5051 9.853555 TTCATGAAAATTTGATTTATAGCACGT 57.146 25.926 5.45 0.00 0.00 4.49
3059 5114 1.142465 ACTGGATGGACTGATCATGGC 59.858 52.381 0.00 0.00 0.00 4.40
3067 5122 1.608055 TGTGCAAACTGGATGGACTG 58.392 50.000 0.00 0.00 39.55 3.51
3068 5123 2.363306 TTGTGCAAACTGGATGGACT 57.637 45.000 0.00 0.00 39.55 3.85
3069 5124 3.451141 TTTTGTGCAAACTGGATGGAC 57.549 42.857 0.00 0.81 39.31 4.02
3070 5125 4.686191 AATTTTGTGCAAACTGGATGGA 57.314 36.364 0.00 0.00 0.00 3.41
3071 5126 6.164876 TGATAATTTTGTGCAAACTGGATGG 58.835 36.000 0.00 0.00 0.00 3.51
3072 5127 7.332430 ACATGATAATTTTGTGCAAACTGGATG 59.668 33.333 0.00 0.00 0.00 3.51
3073 5128 7.388437 ACATGATAATTTTGTGCAAACTGGAT 58.612 30.769 0.00 0.00 0.00 3.41
3074 5129 6.757237 ACATGATAATTTTGTGCAAACTGGA 58.243 32.000 0.00 0.00 0.00 3.86
3075 5130 7.814107 AGTACATGATAATTTTGTGCAAACTGG 59.186 33.333 0.00 0.00 0.00 4.00
3076 5131 8.746922 AGTACATGATAATTTTGTGCAAACTG 57.253 30.769 0.00 0.00 0.00 3.16
3105 5160 9.487790 ACACGGTAAATTCATGAAATTTTGATT 57.512 25.926 13.09 0.00 43.51 2.57
3107 5162 9.967346 TTACACGGTAAATTCATGAAATTTTGA 57.033 25.926 13.09 0.00 43.51 2.69
3145 5200 9.695526 CACACATCATCAAGGAAAATTTAGAAA 57.304 29.630 0.00 0.00 0.00 2.52
3146 5201 9.076781 TCACACATCATCAAGGAAAATTTAGAA 57.923 29.630 0.00 0.00 0.00 2.10
3147 5202 8.634335 TCACACATCATCAAGGAAAATTTAGA 57.366 30.769 0.00 0.00 0.00 2.10
3148 5203 9.132521 GTTCACACATCATCAAGGAAAATTTAG 57.867 33.333 0.00 0.00 0.00 1.85
3149 5204 8.859090 AGTTCACACATCATCAAGGAAAATTTA 58.141 29.630 0.00 0.00 0.00 1.40
3150 5205 7.729116 AGTTCACACATCATCAAGGAAAATTT 58.271 30.769 0.00 0.00 0.00 1.82
3151 5206 7.014518 TGAGTTCACACATCATCAAGGAAAATT 59.985 33.333 0.00 0.00 0.00 1.82
3152 5207 6.491062 TGAGTTCACACATCATCAAGGAAAAT 59.509 34.615 0.00 0.00 0.00 1.82
3153 5208 5.827267 TGAGTTCACACATCATCAAGGAAAA 59.173 36.000 0.00 0.00 0.00 2.29
3154 5209 5.375773 TGAGTTCACACATCATCAAGGAAA 58.624 37.500 0.00 0.00 0.00 3.13
3155 5210 4.971939 TGAGTTCACACATCATCAAGGAA 58.028 39.130 0.00 0.00 0.00 3.36
3156 5211 4.622260 TGAGTTCACACATCATCAAGGA 57.378 40.909 0.00 0.00 0.00 3.36
3157 5212 5.481200 GATGAGTTCACACATCATCAAGG 57.519 43.478 11.24 0.00 45.59 3.61
3170 5225 3.319689 TGTTGGTACGAGTGATGAGTTCA 59.680 43.478 0.00 0.00 0.00 3.18
3171 5226 3.909430 TGTTGGTACGAGTGATGAGTTC 58.091 45.455 0.00 0.00 0.00 3.01
3172 5227 4.537135 ATGTTGGTACGAGTGATGAGTT 57.463 40.909 0.00 0.00 0.00 3.01
3173 5228 4.537135 AATGTTGGTACGAGTGATGAGT 57.463 40.909 0.00 0.00 0.00 3.41
3174 5229 5.407502 TGTAATGTTGGTACGAGTGATGAG 58.592 41.667 0.00 0.00 0.00 2.90
3175 5230 5.394224 TGTAATGTTGGTACGAGTGATGA 57.606 39.130 0.00 0.00 0.00 2.92
3176 5231 7.946655 ATATGTAATGTTGGTACGAGTGATG 57.053 36.000 0.00 0.00 0.00 3.07
3178 5233 9.687210 GATTATATGTAATGTTGGTACGAGTGA 57.313 33.333 0.00 0.00 30.75 3.41
3179 5234 9.692749 AGATTATATGTAATGTTGGTACGAGTG 57.307 33.333 0.00 0.00 30.75 3.51
3180 5235 9.692749 CAGATTATATGTAATGTTGGTACGAGT 57.307 33.333 0.00 0.00 30.75 4.18
3181 5236 8.648097 GCAGATTATATGTAATGTTGGTACGAG 58.352 37.037 0.00 0.00 30.75 4.18
3182 5237 7.327518 CGCAGATTATATGTAATGTTGGTACGA 59.672 37.037 0.00 0.00 30.75 3.43
3183 5238 7.411480 CCGCAGATTATATGTAATGTTGGTACG 60.411 40.741 0.00 0.00 30.75 3.67
3184 5239 7.386848 ACCGCAGATTATATGTAATGTTGGTAC 59.613 37.037 9.75 0.00 32.44 3.34
3185 5240 7.386573 CACCGCAGATTATATGTAATGTTGGTA 59.613 37.037 10.63 0.00 32.44 3.25
3186 5241 6.204688 CACCGCAGATTATATGTAATGTTGGT 59.795 38.462 0.00 3.84 33.50 3.67
3187 5242 6.426633 TCACCGCAGATTATATGTAATGTTGG 59.573 38.462 0.00 3.27 30.75 3.77
3188 5243 7.420184 TCACCGCAGATTATATGTAATGTTG 57.580 36.000 0.00 0.24 30.75 3.33
3189 5244 8.445275 TTTCACCGCAGATTATATGTAATGTT 57.555 30.769 0.00 0.00 30.75 2.71
3190 5245 7.931407 TCTTTCACCGCAGATTATATGTAATGT 59.069 33.333 0.00 0.00 30.75 2.71
3191 5246 8.310406 TCTTTCACCGCAGATTATATGTAATG 57.690 34.615 0.00 0.00 30.75 1.90
3192 5247 8.902540 TTCTTTCACCGCAGATTATATGTAAT 57.097 30.769 0.00 0.00 33.26 1.89
3193 5248 8.201464 TCTTCTTTCACCGCAGATTATATGTAA 58.799 33.333 0.00 0.00 0.00 2.41
3194 5249 7.722363 TCTTCTTTCACCGCAGATTATATGTA 58.278 34.615 0.00 0.00 0.00 2.29
3195 5250 6.582636 TCTTCTTTCACCGCAGATTATATGT 58.417 36.000 0.00 0.00 0.00 2.29
3196 5251 7.482654 TTCTTCTTTCACCGCAGATTATATG 57.517 36.000 0.00 0.00 0.00 1.78
3197 5252 6.203723 GCTTCTTCTTTCACCGCAGATTATAT 59.796 38.462 0.00 0.00 0.00 0.86
3198 5253 5.523916 GCTTCTTCTTTCACCGCAGATTATA 59.476 40.000 0.00 0.00 0.00 0.98
3199 5254 4.333926 GCTTCTTCTTTCACCGCAGATTAT 59.666 41.667 0.00 0.00 0.00 1.28
3200 5255 3.684788 GCTTCTTCTTTCACCGCAGATTA 59.315 43.478 0.00 0.00 0.00 1.75
3201 5256 2.485814 GCTTCTTCTTTCACCGCAGATT 59.514 45.455 0.00 0.00 0.00 2.40
3202 5257 2.079925 GCTTCTTCTTTCACCGCAGAT 58.920 47.619 0.00 0.00 0.00 2.90
3203 5258 1.202639 TGCTTCTTCTTTCACCGCAGA 60.203 47.619 0.00 0.00 0.00 4.26
3204 5259 1.229428 TGCTTCTTCTTTCACCGCAG 58.771 50.000 0.00 0.00 0.00 5.18
3205 5260 1.674359 TTGCTTCTTCTTTCACCGCA 58.326 45.000 0.00 0.00 0.00 5.69
3206 5261 2.226437 TGATTGCTTCTTCTTTCACCGC 59.774 45.455 0.00 0.00 0.00 5.68
3207 5262 3.250762 TGTGATTGCTTCTTCTTTCACCG 59.749 43.478 0.00 0.00 34.11 4.94
3208 5263 4.036734 TGTGTGATTGCTTCTTCTTTCACC 59.963 41.667 0.00 0.00 34.11 4.02
3209 5264 5.173774 TGTGTGATTGCTTCTTCTTTCAC 57.826 39.130 0.00 0.00 35.27 3.18
3210 5265 5.833406 TTGTGTGATTGCTTCTTCTTTCA 57.167 34.783 0.00 0.00 0.00 2.69
3211 5266 7.524294 TTTTTGTGTGATTGCTTCTTCTTTC 57.476 32.000 0.00 0.00 0.00 2.62
3232 5287 2.783135 TGAATGCTCTCTCCGCTTTTT 58.217 42.857 0.00 0.00 0.00 1.94
3233 5288 2.479566 TGAATGCTCTCTCCGCTTTT 57.520 45.000 0.00 0.00 0.00 2.27
3234 5289 2.706339 ATGAATGCTCTCTCCGCTTT 57.294 45.000 0.00 0.00 0.00 3.51
3235 5290 2.224161 GGTATGAATGCTCTCTCCGCTT 60.224 50.000 0.00 0.00 0.00 4.68
3236 5291 1.342819 GGTATGAATGCTCTCTCCGCT 59.657 52.381 0.00 0.00 0.00 5.52
3237 5292 1.069204 TGGTATGAATGCTCTCTCCGC 59.931 52.381 0.00 0.00 0.00 5.54
3238 5293 2.546795 GGTGGTATGAATGCTCTCTCCG 60.547 54.545 0.00 0.00 0.00 4.63
3239 5294 2.546795 CGGTGGTATGAATGCTCTCTCC 60.547 54.545 0.00 0.00 0.00 3.71
3240 5295 2.546795 CCGGTGGTATGAATGCTCTCTC 60.547 54.545 0.00 0.00 0.00 3.20
3241 5296 1.414181 CCGGTGGTATGAATGCTCTCT 59.586 52.381 0.00 0.00 0.00 3.10
3242 5297 1.412710 TCCGGTGGTATGAATGCTCTC 59.587 52.381 0.00 0.00 0.00 3.20
3243 5298 1.414181 CTCCGGTGGTATGAATGCTCT 59.586 52.381 0.00 0.00 0.00 4.09
3244 5299 1.871080 CTCCGGTGGTATGAATGCTC 58.129 55.000 0.00 0.00 0.00 4.26
3245 5300 0.179045 GCTCCGGTGGTATGAATGCT 60.179 55.000 0.00 0.00 0.00 3.79
3246 5301 0.463654 TGCTCCGGTGGTATGAATGC 60.464 55.000 0.00 0.00 0.00 3.56
3247 5302 2.146342 GATGCTCCGGTGGTATGAATG 58.854 52.381 0.00 0.00 0.00 2.67
3248 5303 1.768275 TGATGCTCCGGTGGTATGAAT 59.232 47.619 0.00 0.00 0.00 2.57
3249 5304 1.199615 TGATGCTCCGGTGGTATGAA 58.800 50.000 0.00 0.00 0.00 2.57
3250 5305 1.134521 GTTGATGCTCCGGTGGTATGA 60.135 52.381 0.00 0.00 0.00 2.15
3251 5306 1.299541 GTTGATGCTCCGGTGGTATG 58.700 55.000 0.00 0.00 0.00 2.39
3252 5307 0.908910 TGTTGATGCTCCGGTGGTAT 59.091 50.000 0.00 0.41 0.00 2.73
3253 5308 0.908910 ATGTTGATGCTCCGGTGGTA 59.091 50.000 0.00 0.00 0.00 3.25
3254 5309 0.392998 GATGTTGATGCTCCGGTGGT 60.393 55.000 0.00 0.00 0.00 4.16
3255 5310 0.107508 AGATGTTGATGCTCCGGTGG 60.108 55.000 0.00 0.00 0.00 4.61
3256 5311 1.667724 GAAGATGTTGATGCTCCGGTG 59.332 52.381 0.00 0.00 0.00 4.94
3257 5312 1.556911 AGAAGATGTTGATGCTCCGGT 59.443 47.619 0.00 0.00 0.00 5.28
3258 5313 1.938577 CAGAAGATGTTGATGCTCCGG 59.061 52.381 0.00 0.00 0.00 5.14
3259 5314 1.329906 GCAGAAGATGTTGATGCTCCG 59.670 52.381 2.96 0.00 34.10 4.63
3260 5315 2.641305 AGCAGAAGATGTTGATGCTCC 58.359 47.619 6.17 0.00 43.46 4.70
3263 5318 1.329906 CCGAGCAGAAGATGTTGATGC 59.670 52.381 2.11 2.11 37.15 3.91
3264 5319 2.606725 GTCCGAGCAGAAGATGTTGATG 59.393 50.000 0.00 0.00 0.00 3.07
3265 5320 2.234661 TGTCCGAGCAGAAGATGTTGAT 59.765 45.455 0.00 0.00 0.00 2.57
3266 5321 1.618343 TGTCCGAGCAGAAGATGTTGA 59.382 47.619 0.00 0.00 0.00 3.18
3267 5322 2.084610 TGTCCGAGCAGAAGATGTTG 57.915 50.000 0.00 0.00 0.00 3.33
3268 5323 2.499289 AGATGTCCGAGCAGAAGATGTT 59.501 45.455 0.00 0.00 0.00 2.71
3269 5324 2.106566 AGATGTCCGAGCAGAAGATGT 58.893 47.619 0.00 0.00 0.00 3.06
3270 5325 2.471818 CAGATGTCCGAGCAGAAGATG 58.528 52.381 0.00 0.00 0.00 2.90
3271 5326 1.202510 GCAGATGTCCGAGCAGAAGAT 60.203 52.381 0.00 0.00 0.00 2.40
3272 5327 0.174389 GCAGATGTCCGAGCAGAAGA 59.826 55.000 0.00 0.00 0.00 2.87
3273 5328 0.108472 TGCAGATGTCCGAGCAGAAG 60.108 55.000 0.00 0.00 32.48 2.85
3274 5329 0.390340 GTGCAGATGTCCGAGCAGAA 60.390 55.000 0.00 0.00 37.72 3.02
3275 5330 1.216444 GTGCAGATGTCCGAGCAGA 59.784 57.895 0.00 0.00 37.72 4.26
3276 5331 2.163390 CGTGCAGATGTCCGAGCAG 61.163 63.158 0.00 0.00 37.72 4.24
3277 5332 2.125952 CGTGCAGATGTCCGAGCA 60.126 61.111 0.00 0.00 34.10 4.26
3278 5333 2.635229 ATCCGTGCAGATGTCCGAGC 62.635 60.000 0.00 0.00 0.00 5.03
3279 5334 0.596083 GATCCGTGCAGATGTCCGAG 60.596 60.000 0.00 0.00 0.00 4.63
3280 5335 1.437573 GATCCGTGCAGATGTCCGA 59.562 57.895 0.00 0.00 0.00 4.55
3281 5336 1.946156 CGATCCGTGCAGATGTCCG 60.946 63.158 0.00 0.00 0.00 4.79
3282 5337 2.240500 GCGATCCGTGCAGATGTCC 61.241 63.158 0.00 0.00 0.00 4.02
3283 5338 1.211818 GAGCGATCCGTGCAGATGTC 61.212 60.000 0.00 0.00 33.85 3.06
3284 5339 1.227089 GAGCGATCCGTGCAGATGT 60.227 57.895 0.00 0.00 33.85 3.06
3285 5340 0.807275 TTGAGCGATCCGTGCAGATG 60.807 55.000 0.00 0.00 33.85 2.90
3286 5341 0.807667 GTTGAGCGATCCGTGCAGAT 60.808 55.000 0.00 0.00 33.85 2.90
3287 5342 1.446099 GTTGAGCGATCCGTGCAGA 60.446 57.895 0.00 0.00 33.85 4.26
3288 5343 1.291184 TTGTTGAGCGATCCGTGCAG 61.291 55.000 0.00 0.00 33.85 4.41
3289 5344 0.673333 ATTGTTGAGCGATCCGTGCA 60.673 50.000 0.00 0.00 33.85 4.57
3290 5345 0.247814 CATTGTTGAGCGATCCGTGC 60.248 55.000 0.00 0.00 0.00 5.34
3291 5346 0.374758 CCATTGTTGAGCGATCCGTG 59.625 55.000 0.00 0.00 0.00 4.94
3292 5347 1.369091 GCCATTGTTGAGCGATCCGT 61.369 55.000 0.00 0.00 0.00 4.69
3293 5348 1.353103 GCCATTGTTGAGCGATCCG 59.647 57.895 0.00 0.00 0.00 4.18
3299 5354 1.212751 GGTTCCGCCATTGTTGAGC 59.787 57.895 0.00 0.00 37.17 4.26
3300 5355 1.737793 GTAGGTTCCGCCATTGTTGAG 59.262 52.381 0.00 0.00 40.61 3.02
3301 5356 1.816074 GTAGGTTCCGCCATTGTTGA 58.184 50.000 0.00 0.00 40.61 3.18
3302 5357 0.446222 CGTAGGTTCCGCCATTGTTG 59.554 55.000 0.00 0.00 40.61 3.33
3303 5358 0.322322 TCGTAGGTTCCGCCATTGTT 59.678 50.000 0.00 0.00 40.61 2.83
3304 5359 0.322322 TTCGTAGGTTCCGCCATTGT 59.678 50.000 0.00 0.00 40.61 2.71
3305 5360 1.006832 CTTCGTAGGTTCCGCCATTG 58.993 55.000 0.00 0.00 40.61 2.82
3306 5361 0.743345 GCTTCGTAGGTTCCGCCATT 60.743 55.000 0.00 0.00 40.61 3.16
3307 5362 1.153429 GCTTCGTAGGTTCCGCCAT 60.153 57.895 0.00 0.00 40.61 4.40
3308 5363 2.263540 GCTTCGTAGGTTCCGCCA 59.736 61.111 0.00 0.00 40.61 5.69
3309 5364 2.098831 GTGCTTCGTAGGTTCCGCC 61.099 63.158 0.00 0.00 37.58 6.13
3310 5365 1.080025 AGTGCTTCGTAGGTTCCGC 60.080 57.895 0.00 0.00 0.00 5.54
3311 5366 0.242825 TCAGTGCTTCGTAGGTTCCG 59.757 55.000 0.00 0.00 0.00 4.30
3312 5367 2.674796 ATCAGTGCTTCGTAGGTTCC 57.325 50.000 0.00 0.00 0.00 3.62
3313 5368 3.106672 CGTATCAGTGCTTCGTAGGTTC 58.893 50.000 0.00 0.00 0.00 3.62
3314 5369 2.159282 CCGTATCAGTGCTTCGTAGGTT 60.159 50.000 0.00 0.00 0.00 3.50
3315 5370 1.404391 CCGTATCAGTGCTTCGTAGGT 59.596 52.381 0.00 0.00 0.00 3.08
3316 5371 1.864435 GCCGTATCAGTGCTTCGTAGG 60.864 57.143 0.00 0.00 0.00 3.18
3317 5372 1.478137 GCCGTATCAGTGCTTCGTAG 58.522 55.000 0.00 0.00 0.00 3.51
3318 5373 0.101759 GGCCGTATCAGTGCTTCGTA 59.898 55.000 0.00 0.00 0.00 3.43
3319 5374 1.153628 GGCCGTATCAGTGCTTCGT 60.154 57.895 0.00 0.00 0.00 3.85
3320 5375 0.739462 TTGGCCGTATCAGTGCTTCG 60.739 55.000 0.00 0.00 0.00 3.79
3321 5376 1.448985 TTTGGCCGTATCAGTGCTTC 58.551 50.000 0.00 0.00 0.00 3.86
3322 5377 1.539827 GTTTTGGCCGTATCAGTGCTT 59.460 47.619 0.00 0.00 0.00 3.91
3323 5378 1.165270 GTTTTGGCCGTATCAGTGCT 58.835 50.000 0.00 0.00 0.00 4.40
3324 5379 1.135689 CAGTTTTGGCCGTATCAGTGC 60.136 52.381 0.00 0.00 0.00 4.40
3325 5380 1.468520 CCAGTTTTGGCCGTATCAGTG 59.531 52.381 0.00 0.00 37.73 3.66
3326 5381 1.821216 CCAGTTTTGGCCGTATCAGT 58.179 50.000 0.00 0.00 37.73 3.41
3336 5391 5.161249 AGTATGCCGATACACCAGTTTTGG 61.161 45.833 0.00 0.00 40.14 3.28
3337 5392 3.938963 AGTATGCCGATACACCAGTTTTG 59.061 43.478 0.00 0.00 37.50 2.44
3338 5393 3.938963 CAGTATGCCGATACACCAGTTTT 59.061 43.478 0.00 0.00 37.50 2.43
3339 5394 3.531538 CAGTATGCCGATACACCAGTTT 58.468 45.455 0.00 0.00 37.50 2.66
3340 5395 3.179443 CAGTATGCCGATACACCAGTT 57.821 47.619 0.00 0.00 37.50 3.16
3341 5396 2.890808 CAGTATGCCGATACACCAGT 57.109 50.000 0.00 0.00 37.50 4.00
3360 5415 2.016704 CGGAGTATCGGCGACATGC 61.017 63.158 13.76 5.43 45.38 4.06
3361 5416 0.241213 ATCGGAGTATCGGCGACATG 59.759 55.000 13.76 0.00 31.94 3.21
3362 5417 1.467734 GTATCGGAGTATCGGCGACAT 59.532 52.381 13.76 0.00 31.94 3.06
3363 5418 0.870393 GTATCGGAGTATCGGCGACA 59.130 55.000 13.76 0.00 31.94 4.35
3364 5419 0.179230 CGTATCGGAGTATCGGCGAC 60.179 60.000 13.76 0.00 31.94 5.19
3365 5420 1.904852 GCGTATCGGAGTATCGGCGA 61.905 60.000 13.87 13.87 35.13 5.54
3366 5421 1.511464 GCGTATCGGAGTATCGGCG 60.511 63.158 0.00 0.00 35.13 6.46
3367 5422 0.454620 CTGCGTATCGGAGTATCGGC 60.455 60.000 2.74 0.00 40.30 5.54
3368 5423 0.168348 CCTGCGTATCGGAGTATCGG 59.832 60.000 9.45 0.00 43.50 4.18
3369 5424 1.154197 TCCTGCGTATCGGAGTATCG 58.846 55.000 9.45 0.00 43.50 2.92
3370 5425 3.242349 CGTATCCTGCGTATCGGAGTATC 60.242 52.174 9.45 0.00 43.50 2.24
3371 5426 2.676839 CGTATCCTGCGTATCGGAGTAT 59.323 50.000 9.45 2.54 43.50 2.12
3372 5427 2.071540 CGTATCCTGCGTATCGGAGTA 58.928 52.381 9.45 0.00 43.50 2.59
3373 5428 0.873054 CGTATCCTGCGTATCGGAGT 59.127 55.000 9.45 0.00 43.50 3.85
3374 5429 0.168348 CCGTATCCTGCGTATCGGAG 59.832 60.000 3.85 3.85 44.57 4.63
3375 5430 1.859427 GCCGTATCCTGCGTATCGGA 61.859 60.000 5.60 0.00 40.29 4.55
3376 5431 1.443872 GCCGTATCCTGCGTATCGG 60.444 63.158 0.00 0.00 40.72 4.18
3377 5432 0.039437 AAGCCGTATCCTGCGTATCG 60.039 55.000 0.00 0.00 0.00 2.92
3378 5433 1.000607 TGAAGCCGTATCCTGCGTATC 60.001 52.381 0.00 0.00 0.00 2.24
3379 5434 1.037493 TGAAGCCGTATCCTGCGTAT 58.963 50.000 0.00 0.00 0.00 3.06
3380 5435 0.818938 TTGAAGCCGTATCCTGCGTA 59.181 50.000 0.00 0.00 0.00 4.42
3381 5436 0.178068 ATTGAAGCCGTATCCTGCGT 59.822 50.000 0.00 0.00 0.00 5.24
3382 5437 2.148916 TATTGAAGCCGTATCCTGCG 57.851 50.000 0.00 0.00 0.00 5.18
3383 5438 2.160417 GCATATTGAAGCCGTATCCTGC 59.840 50.000 0.00 0.00 0.00 4.85
3384 5439 2.413112 CGCATATTGAAGCCGTATCCTG 59.587 50.000 0.00 0.00 0.00 3.86
3385 5440 2.037251 ACGCATATTGAAGCCGTATCCT 59.963 45.455 0.00 0.00 0.00 3.24
3386 5441 2.413837 ACGCATATTGAAGCCGTATCC 58.586 47.619 0.00 0.00 0.00 2.59
3387 5442 4.267928 GGATACGCATATTGAAGCCGTATC 59.732 45.833 17.99 17.99 41.23 2.24
3388 5443 4.181578 GGATACGCATATTGAAGCCGTAT 58.818 43.478 3.97 3.97 35.13 3.06
3389 5444 3.581755 GGATACGCATATTGAAGCCGTA 58.418 45.455 0.00 0.00 0.00 4.02
3390 5445 2.413837 GGATACGCATATTGAAGCCGT 58.586 47.619 0.00 0.00 0.00 5.68
3391 5446 1.732259 GGGATACGCATATTGAAGCCG 59.268 52.381 0.00 0.00 37.60 5.52
3392 5447 2.744202 CTGGGATACGCATATTGAAGCC 59.256 50.000 0.00 0.00 37.60 4.35
3393 5448 2.744202 CCTGGGATACGCATATTGAAGC 59.256 50.000 0.00 0.00 37.60 3.86
3394 5449 4.248859 CTCCTGGGATACGCATATTGAAG 58.751 47.826 0.00 0.00 37.60 3.02
3395 5450 3.646162 ACTCCTGGGATACGCATATTGAA 59.354 43.478 0.00 0.00 37.60 2.69
3396 5451 3.239449 ACTCCTGGGATACGCATATTGA 58.761 45.455 0.00 0.00 37.60 2.57
3397 5452 3.685139 ACTCCTGGGATACGCATATTG 57.315 47.619 0.00 0.00 37.60 1.90
3398 5453 5.273208 AGATACTCCTGGGATACGCATATT 58.727 41.667 0.00 0.00 37.60 1.28
3399 5454 4.873010 AGATACTCCTGGGATACGCATAT 58.127 43.478 0.00 0.00 37.60 1.78
3400 5455 4.263771 TGAGATACTCCTGGGATACGCATA 60.264 45.833 0.00 0.00 37.60 3.14
3401 5456 3.093057 GAGATACTCCTGGGATACGCAT 58.907 50.000 0.00 0.00 37.60 4.73
3402 5457 2.158519 TGAGATACTCCTGGGATACGCA 60.159 50.000 0.00 0.00 37.60 5.24
3403 5458 2.515854 TGAGATACTCCTGGGATACGC 58.484 52.381 0.00 0.00 37.60 4.42
3404 5459 5.730296 AATTGAGATACTCCTGGGATACG 57.270 43.478 0.00 0.00 37.60 3.06
3405 5460 7.993183 TCAAAAATTGAGATACTCCTGGGATAC 59.007 37.037 0.00 0.00 34.08 2.24
3406 5461 8.101309 TCAAAAATTGAGATACTCCTGGGATA 57.899 34.615 0.00 0.00 34.08 2.59
3407 5462 6.973642 TCAAAAATTGAGATACTCCTGGGAT 58.026 36.000 0.00 0.00 34.08 3.85
3408 5463 6.387192 TCAAAAATTGAGATACTCCTGGGA 57.613 37.500 0.00 0.00 34.08 4.37
3409 5464 7.651027 AATCAAAAATTGAGATACTCCTGGG 57.349 36.000 0.00 0.00 43.98 4.45
3436 5491 9.401873 CGTATCGGGTTTATTTTTCTTTCTTTT 57.598 29.630 0.00 0.00 0.00 2.27
3437 5492 7.539710 GCGTATCGGGTTTATTTTTCTTTCTTT 59.460 33.333 0.00 0.00 0.00 2.52
3438 5493 7.025365 GCGTATCGGGTTTATTTTTCTTTCTT 58.975 34.615 0.00 0.00 0.00 2.52
3439 5494 6.149807 TGCGTATCGGGTTTATTTTTCTTTCT 59.850 34.615 0.00 0.00 0.00 2.52
3440 5495 6.249893 GTGCGTATCGGGTTTATTTTTCTTTC 59.750 38.462 0.00 0.00 0.00 2.62
3441 5496 6.072342 AGTGCGTATCGGGTTTATTTTTCTTT 60.072 34.615 0.00 0.00 0.00 2.52
3442 5497 5.413523 AGTGCGTATCGGGTTTATTTTTCTT 59.586 36.000 0.00 0.00 0.00 2.52
3443 5498 4.939439 AGTGCGTATCGGGTTTATTTTTCT 59.061 37.500 0.00 0.00 0.00 2.52
3444 5499 5.025826 CAGTGCGTATCGGGTTTATTTTTC 58.974 41.667 0.00 0.00 0.00 2.29
3445 5500 4.456566 ACAGTGCGTATCGGGTTTATTTTT 59.543 37.500 0.00 0.00 0.00 1.94
3446 5501 4.004982 ACAGTGCGTATCGGGTTTATTTT 58.995 39.130 0.00 0.00 0.00 1.82
3447 5502 3.372822 CACAGTGCGTATCGGGTTTATTT 59.627 43.478 0.00 0.00 0.00 1.40
3448 5503 2.933906 CACAGTGCGTATCGGGTTTATT 59.066 45.455 0.00 0.00 0.00 1.40
3449 5504 2.546778 CACAGTGCGTATCGGGTTTAT 58.453 47.619 0.00 0.00 0.00 1.40
3450 5505 1.404449 CCACAGTGCGTATCGGGTTTA 60.404 52.381 0.00 0.00 0.00 2.01
3451 5506 0.672401 CCACAGTGCGTATCGGGTTT 60.672 55.000 0.00 0.00 0.00 3.27
3452 5507 1.079405 CCACAGTGCGTATCGGGTT 60.079 57.895 0.00 0.00 0.00 4.11
3453 5508 1.945354 CTCCACAGTGCGTATCGGGT 61.945 60.000 0.00 0.00 0.00 5.28
3454 5509 1.226974 CTCCACAGTGCGTATCGGG 60.227 63.158 0.00 0.00 0.00 5.14
3455 5510 0.385751 ATCTCCACAGTGCGTATCGG 59.614 55.000 0.00 0.00 0.00 4.18
3456 5511 1.481240 CATCTCCACAGTGCGTATCG 58.519 55.000 0.00 0.00 0.00 2.92
3457 5512 1.137086 ACCATCTCCACAGTGCGTATC 59.863 52.381 0.00 0.00 0.00 2.24
3458 5513 1.134699 CACCATCTCCACAGTGCGTAT 60.135 52.381 0.00 0.00 0.00 3.06
3459 5514 0.246360 CACCATCTCCACAGTGCGTA 59.754 55.000 0.00 0.00 0.00 4.42
3460 5515 1.004560 CACCATCTCCACAGTGCGT 60.005 57.895 0.00 0.00 0.00 5.24
3461 5516 1.742880 CCACCATCTCCACAGTGCG 60.743 63.158 0.00 0.00 0.00 5.34
3462 5517 1.377725 CCCACCATCTCCACAGTGC 60.378 63.158 0.00 0.00 0.00 4.40
3463 5518 0.914644 ATCCCACCATCTCCACAGTG 59.085 55.000 0.00 0.00 0.00 3.66
3464 5519 2.119495 GTATCCCACCATCTCCACAGT 58.881 52.381 0.00 0.00 0.00 3.55
3465 5520 1.069204 CGTATCCCACCATCTCCACAG 59.931 57.143 0.00 0.00 0.00 3.66
3466 5521 1.119684 CGTATCCCACCATCTCCACA 58.880 55.000 0.00 0.00 0.00 4.17
3467 5522 0.393077 CCGTATCCCACCATCTCCAC 59.607 60.000 0.00 0.00 0.00 4.02
3468 5523 0.762842 CCCGTATCCCACCATCTCCA 60.763 60.000 0.00 0.00 0.00 3.86
3469 5524 0.471211 TCCCGTATCCCACCATCTCC 60.471 60.000 0.00 0.00 0.00 3.71
3470 5525 1.344763 CTTCCCGTATCCCACCATCTC 59.655 57.143 0.00 0.00 0.00 2.75
3471 5526 1.424638 CTTCCCGTATCCCACCATCT 58.575 55.000 0.00 0.00 0.00 2.90
3472 5527 0.396811 CCTTCCCGTATCCCACCATC 59.603 60.000 0.00 0.00 0.00 3.51
3473 5528 0.030501 TCCTTCCCGTATCCCACCAT 60.031 55.000 0.00 0.00 0.00 3.55
3474 5529 0.979187 GTCCTTCCCGTATCCCACCA 60.979 60.000 0.00 0.00 0.00 4.17
3475 5530 0.979187 TGTCCTTCCCGTATCCCACC 60.979 60.000 0.00 0.00 0.00 4.61
3476 5531 1.129058 ATGTCCTTCCCGTATCCCAC 58.871 55.000 0.00 0.00 0.00 4.61
3477 5532 1.128200 CATGTCCTTCCCGTATCCCA 58.872 55.000 0.00 0.00 0.00 4.37
3478 5533 0.396811 CCATGTCCTTCCCGTATCCC 59.603 60.000 0.00 0.00 0.00 3.85
3479 5534 0.250338 GCCATGTCCTTCCCGTATCC 60.250 60.000 0.00 0.00 0.00 2.59
3480 5535 0.468226 TGCCATGTCCTTCCCGTATC 59.532 55.000 0.00 0.00 0.00 2.24
3481 5536 0.916086 TTGCCATGTCCTTCCCGTAT 59.084 50.000 0.00 0.00 0.00 3.06
3482 5537 0.251916 CTTGCCATGTCCTTCCCGTA 59.748 55.000 0.00 0.00 0.00 4.02
3483 5538 1.002134 CTTGCCATGTCCTTCCCGT 60.002 57.895 0.00 0.00 0.00 5.28
3484 5539 2.409870 GCTTGCCATGTCCTTCCCG 61.410 63.158 0.00 0.00 0.00 5.14
3485 5540 2.409870 CGCTTGCCATGTCCTTCCC 61.410 63.158 0.00 0.00 0.00 3.97
3486 5541 1.244019 AACGCTTGCCATGTCCTTCC 61.244 55.000 0.00 0.00 0.00 3.46
3487 5542 0.109597 CAACGCTTGCCATGTCCTTC 60.110 55.000 0.00 0.00 0.00 3.46
3488 5543 1.959085 CAACGCTTGCCATGTCCTT 59.041 52.632 0.00 0.00 0.00 3.36
3489 5544 3.672293 CAACGCTTGCCATGTCCT 58.328 55.556 0.00 0.00 0.00 3.85
3508 5563 3.391665 CTTACTGGGCTCGGGGCTG 62.392 68.421 9.45 4.71 41.46 4.85
3509 5564 3.083997 CTTACTGGGCTCGGGGCT 61.084 66.667 9.45 0.00 41.46 5.19
3510 5565 2.595009 CTTCTTACTGGGCTCGGGGC 62.595 65.000 0.00 0.00 40.90 5.80
3511 5566 1.522569 CTTCTTACTGGGCTCGGGG 59.477 63.158 0.00 0.00 0.00 5.73
3512 5567 1.153349 GCTTCTTACTGGGCTCGGG 60.153 63.158 0.00 0.00 0.00 5.14
3513 5568 1.153349 GGCTTCTTACTGGGCTCGG 60.153 63.158 0.00 0.00 0.00 4.63
3514 5569 1.153349 GGGCTTCTTACTGGGCTCG 60.153 63.158 0.00 0.00 0.00 5.03
3515 5570 0.393132 GTGGGCTTCTTACTGGGCTC 60.393 60.000 0.00 0.00 0.00 4.70
3516 5571 1.685820 GTGGGCTTCTTACTGGGCT 59.314 57.895 0.00 0.00 0.00 5.19
3517 5572 1.745489 CGTGGGCTTCTTACTGGGC 60.745 63.158 0.00 0.00 0.00 5.36
3518 5573 0.108138 CTCGTGGGCTTCTTACTGGG 60.108 60.000 0.00 0.00 0.00 4.45
3519 5574 0.741221 GCTCGTGGGCTTCTTACTGG 60.741 60.000 0.00 0.00 0.00 4.00
3520 5575 0.247736 AGCTCGTGGGCTTCTTACTG 59.752 55.000 0.00 0.00 39.86 2.74
3521 5576 1.848652 TAGCTCGTGGGCTTCTTACT 58.151 50.000 0.00 0.00 42.97 2.24
3522 5577 2.269172 GTTAGCTCGTGGGCTTCTTAC 58.731 52.381 0.00 0.00 42.97 2.34
3523 5578 1.206371 GGTTAGCTCGTGGGCTTCTTA 59.794 52.381 0.00 0.00 42.97 2.10
3524 5579 0.036294 GGTTAGCTCGTGGGCTTCTT 60.036 55.000 0.00 0.00 42.97 2.52
3525 5580 1.597461 GGTTAGCTCGTGGGCTTCT 59.403 57.895 0.00 0.00 42.97 2.85
3526 5581 1.449778 GGGTTAGCTCGTGGGCTTC 60.450 63.158 0.00 0.00 42.97 3.86
3527 5582 0.616679 TAGGGTTAGCTCGTGGGCTT 60.617 55.000 0.00 0.00 42.97 4.35
3528 5583 0.616679 TTAGGGTTAGCTCGTGGGCT 60.617 55.000 0.00 0.00 45.29 5.19
3529 5584 0.461516 GTTAGGGTTAGCTCGTGGGC 60.462 60.000 0.00 0.00 0.00 5.36
3530 5585 0.899720 TGTTAGGGTTAGCTCGTGGG 59.100 55.000 0.00 0.00 0.00 4.61
3531 5586 2.981859 ATGTTAGGGTTAGCTCGTGG 57.018 50.000 0.00 0.00 0.00 4.94
3532 5587 3.181510 GCAAATGTTAGGGTTAGCTCGTG 60.182 47.826 0.00 0.00 0.00 4.35
3533 5588 3.007635 GCAAATGTTAGGGTTAGCTCGT 58.992 45.455 0.00 0.00 0.00 4.18
3534 5589 3.270877 AGCAAATGTTAGGGTTAGCTCG 58.729 45.455 0.00 0.00 0.00 5.03
3535 5590 4.518249 AGAGCAAATGTTAGGGTTAGCTC 58.482 43.478 0.00 0.00 45.50 4.09
3536 5591 4.226168 AGAGAGCAAATGTTAGGGTTAGCT 59.774 41.667 0.00 0.00 0.00 3.32
3537 5592 4.518249 AGAGAGCAAATGTTAGGGTTAGC 58.482 43.478 0.00 0.00 0.00 3.09
3538 5593 5.983540 AGAGAGAGCAAATGTTAGGGTTAG 58.016 41.667 0.00 0.00 0.00 2.34
3539 5594 5.104900 GGAGAGAGAGCAAATGTTAGGGTTA 60.105 44.000 0.00 0.00 0.00 2.85
3540 5595 4.323868 GGAGAGAGAGCAAATGTTAGGGTT 60.324 45.833 0.00 0.00 0.00 4.11
3541 5596 3.198853 GGAGAGAGAGCAAATGTTAGGGT 59.801 47.826 0.00 0.00 0.00 4.34
3542 5597 3.454082 AGGAGAGAGAGCAAATGTTAGGG 59.546 47.826 0.00 0.00 0.00 3.53
3543 5598 4.405358 AGAGGAGAGAGAGCAAATGTTAGG 59.595 45.833 0.00 0.00 0.00 2.69
3544 5599 5.360714 AGAGAGGAGAGAGAGCAAATGTTAG 59.639 44.000 0.00 0.00 0.00 2.34
3545 5600 5.126869 CAGAGAGGAGAGAGAGCAAATGTTA 59.873 44.000 0.00 0.00 0.00 2.41
3546 5601 4.081531 CAGAGAGGAGAGAGAGCAAATGTT 60.082 45.833 0.00 0.00 0.00 2.71
3547 5602 3.448301 CAGAGAGGAGAGAGAGCAAATGT 59.552 47.826 0.00 0.00 0.00 2.71
3548 5603 3.448301 ACAGAGAGGAGAGAGAGCAAATG 59.552 47.826 0.00 0.00 0.00 2.32
3549 5604 3.711863 ACAGAGAGGAGAGAGAGCAAAT 58.288 45.455 0.00 0.00 0.00 2.32
3550 5605 3.168035 ACAGAGAGGAGAGAGAGCAAA 57.832 47.619 0.00 0.00 0.00 3.68
3551 5606 2.897271 ACAGAGAGGAGAGAGAGCAA 57.103 50.000 0.00 0.00 0.00 3.91
3552 5607 3.494223 CGATACAGAGAGGAGAGAGAGCA 60.494 52.174 0.00 0.00 0.00 4.26
3553 5608 3.067106 CGATACAGAGAGGAGAGAGAGC 58.933 54.545 0.00 0.00 0.00 4.09
3554 5609 3.557054 CCCGATACAGAGAGGAGAGAGAG 60.557 56.522 0.00 0.00 0.00 3.20
3555 5610 2.370519 CCCGATACAGAGAGGAGAGAGA 59.629 54.545 0.00 0.00 0.00 3.10
3556 5611 2.778299 CCCGATACAGAGAGGAGAGAG 58.222 57.143 0.00 0.00 0.00 3.20
3557 5612 1.202830 GCCCGATACAGAGAGGAGAGA 60.203 57.143 0.00 0.00 0.00 3.10
3558 5613 1.243902 GCCCGATACAGAGAGGAGAG 58.756 60.000 0.00 0.00 0.00 3.20
3559 5614 0.535328 CGCCCGATACAGAGAGGAGA 60.535 60.000 0.00 0.00 0.00 3.71
3560 5615 1.519751 CCGCCCGATACAGAGAGGAG 61.520 65.000 0.00 0.00 0.00 3.69
3561 5616 1.528542 CCGCCCGATACAGAGAGGA 60.529 63.158 0.00 0.00 0.00 3.71
3562 5617 2.565645 CCCGCCCGATACAGAGAGG 61.566 68.421 0.00 0.00 0.00 3.69
3563 5618 2.565645 CCCCGCCCGATACAGAGAG 61.566 68.421 0.00 0.00 0.00 3.20
3564 5619 2.520982 CCCCGCCCGATACAGAGA 60.521 66.667 0.00 0.00 0.00 3.10
3565 5620 3.616721 CCCCCGCCCGATACAGAG 61.617 72.222 0.00 0.00 0.00 3.35
3566 5621 4.146156 TCCCCCGCCCGATACAGA 62.146 66.667 0.00 0.00 0.00 3.41
3567 5622 3.925090 GTCCCCCGCCCGATACAG 61.925 72.222 0.00 0.00 0.00 2.74
3568 5623 4.468769 AGTCCCCCGCCCGATACA 62.469 66.667 0.00 0.00 0.00 2.29
3569 5624 3.925090 CAGTCCCCCGCCCGATAC 61.925 72.222 0.00 0.00 0.00 2.24
3570 5625 2.989173 CTACAGTCCCCCGCCCGATA 62.989 65.000 0.00 0.00 0.00 2.92
3571 5626 4.468769 TACAGTCCCCCGCCCGAT 62.469 66.667 0.00 0.00 0.00 4.18
3574 5629 4.791069 TCCTACAGTCCCCCGCCC 62.791 72.222 0.00 0.00 0.00 6.13
3575 5630 3.155167 CTCCTACAGTCCCCCGCC 61.155 72.222 0.00 0.00 0.00 6.13
3576 5631 3.851128 GCTCCTACAGTCCCCCGC 61.851 72.222 0.00 0.00 0.00 6.13
3577 5632 3.528370 CGCTCCTACAGTCCCCCG 61.528 72.222 0.00 0.00 0.00 5.73
3578 5633 3.851128 GCGCTCCTACAGTCCCCC 61.851 72.222 0.00 0.00 0.00 5.40
3579 5634 4.208686 CGCGCTCCTACAGTCCCC 62.209 72.222 5.56 0.00 0.00 4.81
3580 5635 4.874977 GCGCGCTCCTACAGTCCC 62.875 72.222 26.67 0.00 0.00 4.46
3581 5636 4.874977 GGCGCGCTCCTACAGTCC 62.875 72.222 32.29 5.91 0.00 3.85
3626 5681 2.029666 CTAGGCGATTCCAGGCGG 59.970 66.667 0.00 0.00 39.33 6.13
3627 5682 1.300233 GTCTAGGCGATTCCAGGCG 60.300 63.158 0.00 0.00 39.33 5.52
3628 5683 2.128729 AGTCTAGGCGATTCCAGGC 58.871 57.895 0.00 0.00 37.29 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.