AutoCloner

Multiple sequence alignment - TraesCS3A01G019700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G019700	chr3A	100.000	2740	0	0	350	3089	11873948	11871209	0.000000e+00	5024.0
1	TraesCS3A01G019700	chr3A	100.000	576	0	0	350	925	11919879	11920454	0.000000e+00	1064.0
2	TraesCS3A01G019700	chr3A	100.000	576	0	0	350	925	11932487	11933062	0.000000e+00	1064.0
3	TraesCS3A01G019700	chr3A	100.000	520	0	0	936	1455	11920584	11921103	0.000000e+00	961.0
4	TraesCS3A01G019700	chr3A	89.171	591	55	3	1505	2089	12117724	12117137	0.000000e+00	728.0
5	TraesCS3A01G019700	chr3A	87.500	600	57	8	1505	2089	11921129	11921725	0.000000e+00	676.0
6	TraesCS3A01G019700	chr3A	83.333	492	66	11	971	1455	12118232	12117750	1.020000e-119	440.0
7	TraesCS3A01G019700	chr3A	100.000	212	0	0	1	212	11874297	11874086	2.890000e-105	392.0
8	TraesCS3A01G019700	chr3A	100.000	212	0	0	1	212	11919611	11919822	2.890000e-105	392.0
9	TraesCS3A01G019700	chr3A	100.000	212	0	0	1	212	11932219	11932430	2.890000e-105	392.0
10	TraesCS3A01G019700	chr3A	94.949	198	1	1	936	1133	11933193	11933381	5.010000e-78	302.0
11	TraesCS3A01G019700	chr3A	100.000	41	0	0	885	925	11915389	11915429	3.300000e-10	76.8
12	TraesCS3A01G019700	chr3A	100.000	32	0	0	2242	2273	11872021	11871990	3.330000e-05	60.2
13	TraesCS3A01G019700	chr3A	100.000	32	0	0	2277	2308	11872056	11872025	3.330000e-05	60.2
14	TraesCS3A01G019700	chr3B	85.356	1755	181	34	950	2672	31983234	31984944	0.000000e+00	1748.0
15	TraesCS3A01G019700	chr3B	84.953	1163	139	21	961	2107	11469544	11470686	0.000000e+00	1146.0
16	TraesCS3A01G019700	chr3B	90.781	781	69	3	2311	3089	11470832	11471611	0.000000e+00	1040.0
17	TraesCS3A01G019700	chr3B	82.300	1000	129	30	1109	2095	11114657	11113693	0.000000e+00	822.0
18	TraesCS3A01G019700	chr3B	93.867	375	22	1	2669	3043	31984974	31985347	5.780000e-157	564.0
19	TraesCS3A01G019700	chr3B	90.355	394	35	2	350	740	819359658	819359265	5.910000e-142	514.0
20	TraesCS3A01G019700	chr3B	91.981	212	16	1	1	212	819359925	819359715	2.330000e-76	296.0
21	TraesCS3A01G019700	chr3B	97.500	40	1	0	2225	2264	11470769	11470808	5.530000e-08	69.4
22	TraesCS3A01G019700	chr3B	97.059	34	1	0	3056	3089	31985346	31985379	1.200000e-04	58.4
23	TraesCS3A01G019700	chr3D	85.381	1758	160	37	950	2671	9121954	9123650	0.000000e+00	1733.0
24	TraesCS3A01G019700	chr3D	88.144	582	66	1	1508	2089	9066965	9066387	0.000000e+00	689.0
25	TraesCS3A01G019700	chr3D	92.941	425	30	0	2665	3089	9123677	9124101	1.220000e-173	619.0
26	TraesCS3A01G019700	chr3D	88.235	391	43	3	356	744	564202222	564202611	6.030000e-127	464.0
27	TraesCS3A01G019700	chr1D	93.639	393	22	2	350	740	487969750	487970141	4.440000e-163	584.0
28	TraesCS3A01G019700	chr1D	93.396	212	13	1	1	212	487969483	487969693	2.310000e-81	313.0
29	TraesCS3A01G019700	chr7B	86.481	540	54	12	2541	3080	62677050	62677570	2.670000e-160	575.0
30	TraesCS3A01G019700	chr7B	80.000	165	31	2	1021	1184	690904484	690904647	1.500000e-23	121.0
31	TraesCS3A01G019700	chr2D	93.316	389	24	1	350	736	14858970	14859358	9.610000e-160	573.0
32	TraesCS3A01G019700	chr2D	93.396	212	13	1	1	212	14858703	14858913	2.310000e-81	313.0
33	TraesCS3A01G019700	chr2B	91.094	393	33	1	350	740	138748724	138749116	5.870000e-147	531.0
34	TraesCS3A01G019700	chr2B	91.509	212	16	2	1	212	138748458	138748667	1.080000e-74	291.0
35	TraesCS3A01G019700	chr2B	86.364	132	18	0	1043	1174	763449602	763449471	8.930000e-31	145.0
36	TraesCS3A01G019700	chr2B	83.217	143	24	0	1032	1174	762957759	762957617	6.950000e-27	132.0
37	TraesCS3A01G019700	chr4B	89.796	392	35	3	350	736	574692859	574693250	5.950000e-137	497.0
38	TraesCS3A01G019700	chr7D	89.717	389	37	2	350	736	627290193	627290580	7.700000e-136	494.0
39	TraesCS3A01G019700	chrUn	90.986	355	30	2	350	703	419550800	419551153	7.750000e-131	477.0
40	TraesCS3A01G019700	chrUn	90.566	212	18	2	1	212	419550534	419550743	2.350000e-71	279.0
41	TraesCS3A01G019700	chrUn	90.566	212	18	2	1	212	474934529	474934738	2.350000e-71	279.0
42	TraesCS3A01G019700	chr1B	90.566	212	18	2	1	212	666347606	666347815	2.350000e-71	279.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G019700	chr3A	11871209	11874297	3088	True	1384.100000	5024	100.000000	1	3089	4	chr3A.!!$R1	3088
1	TraesCS3A01G019700	chr3A	11919611	11921725	2114	False	773.250000	1064	96.875000	1	2089	4	chr3A.!!$F2	2088
2	TraesCS3A01G019700	chr3A	11932219	11933381	1162	False	586.000000	1064	98.316333	1	1133	3	chr3A.!!$F3	1132
3	TraesCS3A01G019700	chr3A	12117137	12118232	1095	True	584.000000	728	86.252000	971	2089	2	chr3A.!!$R2	1118
4	TraesCS3A01G019700	chr3B	11113693	11114657	964	True	822.000000	822	82.300000	1109	2095	1	chr3B.!!$R1	986
5	TraesCS3A01G019700	chr3B	31983234	31985379	2145	False	790.133333	1748	92.094000	950	3089	3	chr3B.!!$F2	2139
6	TraesCS3A01G019700	chr3B	11469544	11471611	2067	False	751.800000	1146	91.078000	961	3089	3	chr3B.!!$F1	2128
7	TraesCS3A01G019700	chr3B	819359265	819359925	660	True	405.000000	514	91.168000	1	740	2	chr3B.!!$R2	739
8	TraesCS3A01G019700	chr3D	9121954	9124101	2147	False	1176.000000	1733	89.161000	950	3089	2	chr3D.!!$F2	2139
9	TraesCS3A01G019700	chr3D	9066387	9066965	578	True	689.000000	689	88.144000	1508	2089	1	chr3D.!!$R1	581
10	TraesCS3A01G019700	chr1D	487969483	487970141	658	False	448.500000	584	93.517500	1	740	2	chr1D.!!$F1	739
11	TraesCS3A01G019700	chr7B	62677050	62677570	520	False	575.000000	575	86.481000	2541	3080	1	chr7B.!!$F1	539
12	TraesCS3A01G019700	chr2D	14858703	14859358	655	False	443.000000	573	93.356000	1	736	2	chr2D.!!$F1	735
13	TraesCS3A01G019700	chr2B	138748458	138749116	658	False	411.000000	531	91.301500	1	740	2	chr2B.!!$F1	739
14	TraesCS3A01G019700	chrUn	419550534	419551153	619	False	378.000000	477	90.776000	1	703	2	chrUn.!!$F2	702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1457	1598	4.515191	GTGTGAAGTCAAGGTTATCAAGCA	59.485	41.667	0.0	0.0	0.0	3.91	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2473	2689	0.320771	ACATGCAGGACGTTCAGGTC	60.321	55.0	4.84	0.0	36.18	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1457	1598	4.515191	GTGTGAAGTCAAGGTTATCAAGCA	59.485	41.667	0.00	0.00	0.00	3.91
1477	1627	2.581354	CGCAGGTGAAGGAGGAGG	59.419	66.667	0.00	0.00	0.00	4.30
1478	1628	1.984570	CGCAGGTGAAGGAGGAGGA	60.985	63.158	0.00	0.00	0.00	3.71
1479	1629	1.904032	GCAGGTGAAGGAGGAGGAG	59.096	63.158	0.00	0.00	0.00	3.69
1485	1635	0.323542	TGAAGGAGGAGGAGACCGTC	60.324	60.000	0.00	0.00	33.96	4.79
1487	1637	0.033894	AAGGAGGAGGAGACCGTCTC	60.034	60.000	18.78	18.78	42.66	3.36
1503	1653	1.591594	CTCCGTCGCCGCACATATT	60.592	57.895	0.00	0.00	0.00	1.28
1538	1688	2.481276	CGTACCTGCCGAATCATCTCAA	60.481	50.000	0.00	0.00	0.00	3.02
1556	1706	3.359033	TCAAGAAATTGCTGGATGGGAG	58.641	45.455	0.00	0.00	0.00	4.30
1563	1713	2.146061	GCTGGATGGGAGGAGAGGG	61.146	68.421	0.00	0.00	0.00	4.30
1672	1831	0.605589	CTATGGACCCCTGAGCGATC	59.394	60.000	0.00	0.00	0.00	3.69
1681	1849	1.588403	CTGAGCGATCCTGCGAGTG	60.588	63.158	0.00	0.00	40.67	3.51
1683	1851	1.587613	GAGCGATCCTGCGAGTGAC	60.588	63.158	0.00	0.00	40.67	3.67
1728	1896	1.681264	CCTCCTGTTTTCAAGGCGTTT	59.319	47.619	0.00	0.00	0.00	3.60
1746	1914	4.447724	GCGTTTCTTCACTTCATCTACACA	59.552	41.667	0.00	0.00	0.00	3.72
1855	2023	2.422519	GCCATGGACAGGATGAAGATGT	60.423	50.000	18.40	0.00	39.69	3.06
1860	2028	4.454678	TGGACAGGATGAAGATGTTATGC	58.545	43.478	0.00	0.00	39.69	3.14
1861	2029	3.817647	GGACAGGATGAAGATGTTATGCC	59.182	47.826	0.00	0.00	39.69	4.40
1891	2059	2.430465	TCTGCAAGAGCCTTGATGTTC	58.570	47.619	16.28	2.25	38.67	3.18
1893	2061	2.555325	CTGCAAGAGCCTTGATGTTCAA	59.445	45.455	16.28	0.00	41.13	2.69
1905	2073	1.601903	GATGTTCAAACTGTGGCGACA	59.398	47.619	0.33	0.33	38.70	4.35
1953	2121	0.242825	GCAGCAAGCTGAAAGATGCA	59.757	50.000	25.03	0.00	46.62	3.96
2016	2184	2.774799	GGCAAGCCAAGGGTATGCG	61.775	63.158	6.14	0.00	37.88	4.73
2223	2438	6.018098	TGGACAAAGCTTGCAAATATTTTGTG	60.018	34.615	23.39	9.31	35.28	3.33
2279	2494	4.394300	CCACCTGTCATGAATGAGTTCTTC	59.606	45.833	0.00	0.00	37.51	2.87
2284	2499	6.058553	TGTCATGAATGAGTTCTTCTGGAT	57.941	37.500	0.00	0.00	37.51	3.41
2287	2502	6.036953	GTCATGAATGAGTTCTTCTGGATGAC	59.963	42.308	0.00	0.00	37.51	3.06
2288	2503	5.752036	TGAATGAGTTCTTCTGGATGACT	57.248	39.130	0.00	0.00	35.33	3.41
2289	2504	6.857437	TGAATGAGTTCTTCTGGATGACTA	57.143	37.500	0.00	0.00	35.33	2.59
2291	2506	4.727507	TGAGTTCTTCTGGATGACTAGC	57.272	45.455	0.00	0.00	0.00	3.42
2292	2507	3.449018	TGAGTTCTTCTGGATGACTAGCC	59.551	47.826	0.00	0.00	0.00	3.93
2293	2508	3.445008	AGTTCTTCTGGATGACTAGCCA	58.555	45.455	0.00	0.00	40.80	4.75
2294	2509	3.196685	AGTTCTTCTGGATGACTAGCCAC	59.803	47.826	0.00	0.00	37.47	5.01
2295	2510	2.111384	TCTTCTGGATGACTAGCCACC	58.889	52.381	0.00	0.00	37.47	4.61
2296	2511	2.114616	CTTCTGGATGACTAGCCACCT	58.885	52.381	0.00	0.00	37.47	4.00
2297	2512	1.489481	TCTGGATGACTAGCCACCTG	58.511	55.000	0.00	0.00	37.47	4.00
2298	2513	1.198713	CTGGATGACTAGCCACCTGT	58.801	55.000	0.00	0.00	37.47	4.00
2299	2514	1.137872	CTGGATGACTAGCCACCTGTC	59.862	57.143	0.00	0.00	37.47	3.51
2300	2515	1.195115	GGATGACTAGCCACCTGTCA	58.805	55.000	0.00	0.00	43.53	3.58
2302	2517	2.996249	ATGACTAGCCACCTGTCATG	57.004	50.000	6.99	0.00	45.94	3.07
2303	2518	1.937191	TGACTAGCCACCTGTCATGA	58.063	50.000	0.00	0.00	36.03	3.07
2304	2519	2.256306	TGACTAGCCACCTGTCATGAA	58.744	47.619	0.00	0.00	36.03	2.57
2305	2520	2.840038	TGACTAGCCACCTGTCATGAAT	59.160	45.455	0.00	0.00	36.03	2.57
2306	2521	3.201290	GACTAGCCACCTGTCATGAATG	58.799	50.000	0.00	0.00	0.00	2.67
2307	2522	2.840038	ACTAGCCACCTGTCATGAATGA	59.160	45.455	0.00	0.00	0.00	2.57
2308	2523	2.885135	AGCCACCTGTCATGAATGAA	57.115	45.000	0.00	0.00	38.75	2.57
2309	2524	3.377253	AGCCACCTGTCATGAATGAAT	57.623	42.857	0.00	0.00	38.75	2.57
2322	2537	4.508461	TGAATGAATGTTGGTCTTGCAG	57.492	40.909	0.00	0.00	0.00	4.41
2461	2677	8.250143	AGTTTTGTCCTTCTGTATCCATTTTT	57.750	30.769	0.00	0.00	0.00	1.94
2473	2689	9.330063	TCTGTATCCATTTTTAGACTAAGCATG	57.670	33.333	8.03	8.03	0.00	4.06
2484	2700	2.924290	GACTAAGCATGACCTGAACGTC	59.076	50.000	0.00	0.00	0.00	4.34
2486	2702	0.687354	AAGCATGACCTGAACGTCCT	59.313	50.000	0.00	0.00	31.35	3.85
2492	2708	0.320771	GACCTGAACGTCCTGCATGT	60.321	55.000	0.00	0.00	0.00	3.21
2502	2718	6.205853	TGAACGTCCTGCATGTTATTTTAACT	59.794	34.615	0.00	0.00	34.07	2.24
2550	2766	5.578727	TGTTTGAACACCGAGGAAATTTTTG	59.421	36.000	0.00	0.00	33.17	2.44
2598	2814	8.305317	GGTAATAGGTGATACTAGGTTGATGAC	58.695	40.741	0.00	0.00	0.00	3.06
2656	2872	8.518702	GTTGGAGAGAAAGCTAAGATGAAATTT	58.481	33.333	0.00	0.00	0.00	1.82
2666	2882	9.692325	AAGCTAAGATGAAATTTACTTCCAGAT	57.308	29.630	7.65	0.27	0.00	2.90
2726	2975	2.831284	AGCCGGCGGTTTTGTTGT	60.831	55.556	28.82	0.00	0.00	3.32
2733	2982	2.347731	GGCGGTTTTGTTGTTTTTCCA	58.652	42.857	0.00	0.00	0.00	3.53
2766	3016	4.713814	AGTCATTCTGTAGGATGCTGAAGA	59.286	41.667	0.00	0.00	41.29	2.87
2789	3039	2.301346	AGCATAATAAGCTGGTGGTGC	58.699	47.619	5.74	5.74	41.61	5.01
2791	3041	2.223572	GCATAATAAGCTGGTGGTGCAC	60.224	50.000	8.80	8.80	0.00	4.57
2925	3175	9.174166	AGTAGTAATATTGTTTCCACCATGAAC	57.826	33.333	0.00	0.00	0.00	3.18
2940	3190	5.012239	ACCATGAACTGTGCTAATGTGAAT	58.988	37.500	0.00	0.00	0.00	2.57
2942	3192	5.356190	CCATGAACTGTGCTAATGTGAATCT	59.644	40.000	0.00	0.00	0.00	2.40
3038	3289	1.268079	GGACTCTTGCTTTGCCTGTTC	59.732	52.381	0.00	0.00	0.00	3.18
3046	3297	1.344114	GCTTTGCCTGTTCCAAATCCA	59.656	47.619	0.00	0.00	32.34	3.41
3085	3336	3.993547	TCTGTGTTTTTCGTTTCGTGTC	58.006	40.909	0.00	0.00	0.00	3.67

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1457	1598	3.710722	CCTCCTTCACCTGCGGCT	61.711	66.667	0.00	0.00	0.00	5.52
1468	1618	0.033894	GAGACGGTCTCCTCCTCCTT	60.034	60.000	24.41	0.00	37.55	3.36
1490	1640	0.809636	CACCTCAATATGTGCGGCGA	60.810	55.000	12.98	0.00	35.29	5.54
1519	1669	3.031013	TCTTGAGATGATTCGGCAGGTA	58.969	45.455	0.00	0.00	0.00	3.08
1538	1688	1.925255	TCCTCCCATCCAGCAATTTCT	59.075	47.619	0.00	0.00	0.00	2.52
1556	1706	0.980231	AGTCACATCTGCCCCTCTCC	60.980	60.000	0.00	0.00	0.00	3.71
1563	1713	2.508526	ACCTCAAAAGTCACATCTGCC	58.491	47.619	0.00	0.00	0.00	4.85
1672	1831	2.282555	CGATTATGTTGTCACTCGCAGG	59.717	50.000	0.00	0.00	0.00	4.85
1681	1849	5.276395	CCATGTCTTCGACGATTATGTTGTC	60.276	44.000	0.00	0.00	37.80	3.18
1683	1851	4.803613	TCCATGTCTTCGACGATTATGTTG	59.196	41.667	0.00	0.00	34.95	3.33
1710	1878	2.650322	AGAAACGCCTTGAAAACAGGA	58.350	42.857	0.00	0.00	32.41	3.86
1728	1896	6.325596	CGAATCTGTGTAGATGAAGTGAAGA	58.674	40.000	0.00	0.00	42.80	2.87
1757	1925	2.158856	TCAAGGTCATCCATAGCAGCAG	60.159	50.000	0.00	0.00	35.89	4.24
1758	1926	1.839354	TCAAGGTCATCCATAGCAGCA	59.161	47.619	0.00	0.00	35.89	4.41
1759	1927	2.627515	TCAAGGTCATCCATAGCAGC	57.372	50.000	0.00	0.00	35.89	5.25
1821	1989	0.740868	CCATGGCATACCTATCGGCG	60.741	60.000	0.00	0.00	36.63	6.46
1855	2023	4.502105	TGCAGAGAATACCTTGGCATAA	57.498	40.909	0.00	0.00	31.96	1.90
1860	2028	2.941720	GCTCTTGCAGAGAATACCTTGG	59.058	50.000	14.86	0.00	45.07	3.61
1861	2029	2.941720	GGCTCTTGCAGAGAATACCTTG	59.058	50.000	14.86	0.00	45.07	3.61
1891	2059	2.118683	CAATGTTGTCGCCACAGTTTG	58.881	47.619	0.00	0.00	32.71	2.93
1893	2061	0.667993	CCAATGTTGTCGCCACAGTT	59.332	50.000	0.00	0.00	32.71	3.16
1905	2073	1.303309	GATCAGCTAGCGCCAATGTT	58.697	50.000	9.55	0.00	36.60	2.71
1953	2121	6.479006	TGAAGAGAGGATGAATTCAACACAT	58.521	36.000	13.09	4.96	0.00	3.21
2016	2184	3.190118	CAGGACAAGATCTTTTGAGGTGC	59.810	47.826	4.86	5.78	0.00	5.01
2110	2311	0.538057	AGGTGGCCACATGTCAACTG	60.538	55.000	35.78	0.00	0.00	3.16
2156	2370	4.225267	TCCCACCCAGAGATCTCTAAAAAC	59.775	45.833	24.69	0.00	37.98	2.43
2223	2438	3.821033	AGAAGTTAACCCAACATGAGCAC	59.179	43.478	0.00	0.00	39.81	4.40
2279	2494	1.137872	GACAGGTGGCTAGTCATCCAG	59.862	57.143	3.36	5.50	32.15	3.86
2284	2499	1.937191	TCATGACAGGTGGCTAGTCA	58.063	50.000	0.00	0.00	45.26	3.41
2287	2502	3.548745	TCATTCATGACAGGTGGCTAG	57.451	47.619	0.00	0.00	0.00	3.42
2288	2503	3.998913	TTCATTCATGACAGGTGGCTA	57.001	42.857	0.00	0.00	36.36	3.93
2289	2504	2.885135	TTCATTCATGACAGGTGGCT	57.115	45.000	0.00	0.00	36.36	4.75
2291	2506	4.381185	CCAACATTCATTCATGACAGGTGG	60.381	45.833	9.30	9.30	40.23	4.61
2292	2507	4.219070	ACCAACATTCATTCATGACAGGTG	59.781	41.667	0.00	0.00	36.36	4.00
2293	2508	4.410099	ACCAACATTCATTCATGACAGGT	58.590	39.130	0.00	0.00	36.36	4.00
2294	2509	4.703575	AGACCAACATTCATTCATGACAGG	59.296	41.667	0.00	0.00	36.36	4.00
2295	2510	5.892160	AGACCAACATTCATTCATGACAG	57.108	39.130	0.00	0.00	36.36	3.51
2296	2511	5.565242	GCAAGACCAACATTCATTCATGACA	60.565	40.000	0.00	0.00	36.36	3.58
2297	2512	4.860907	GCAAGACCAACATTCATTCATGAC	59.139	41.667	0.00	0.00	36.36	3.06
2298	2513	4.523558	TGCAAGACCAACATTCATTCATGA	59.476	37.500	0.00	0.00	34.44	3.07
2299	2514	4.811908	TGCAAGACCAACATTCATTCATG	58.188	39.130	0.00	0.00	0.00	3.07
2300	2515	4.081862	CCTGCAAGACCAACATTCATTCAT	60.082	41.667	0.00	0.00	34.07	2.57
2301	2516	3.256383	CCTGCAAGACCAACATTCATTCA	59.744	43.478	0.00	0.00	34.07	2.57
2302	2517	3.507233	TCCTGCAAGACCAACATTCATTC	59.493	43.478	0.00	0.00	34.07	2.67
2303	2518	3.499338	TCCTGCAAGACCAACATTCATT	58.501	40.909	0.00	0.00	34.07	2.57
2304	2519	3.159213	TCCTGCAAGACCAACATTCAT	57.841	42.857	0.00	0.00	34.07	2.57
2305	2520	2.655090	TCCTGCAAGACCAACATTCA	57.345	45.000	0.00	0.00	34.07	2.57
2306	2521	2.821969	ACATCCTGCAAGACCAACATTC	59.178	45.455	0.00	0.00	34.07	2.67
2307	2522	2.880443	ACATCCTGCAAGACCAACATT	58.120	42.857	0.00	0.00	34.07	2.71
2308	2523	2.592102	ACATCCTGCAAGACCAACAT	57.408	45.000	0.00	0.00	34.07	2.71
2309	2524	2.371841	AGTACATCCTGCAAGACCAACA	59.628	45.455	0.00	0.00	34.07	3.33
2322	2537	3.933332	GCAACCAGTAGTTCAGTACATCC	59.067	47.826	0.00	0.00	36.18	3.51
2362	2577	8.818622	TTAGAGAACTAATAAGCAGGTGTAGA	57.181	34.615	0.00	0.00	34.21	2.59
2461	2677	3.762288	ACGTTCAGGTCATGCTTAGTCTA	59.238	43.478	0.00	0.00	0.00	2.59
2473	2689	0.320771	ACATGCAGGACGTTCAGGTC	60.321	55.000	4.84	0.00	36.18	3.85
2486	2702	9.914834	AGGGTTATCTAGTTAAAATAACATGCA	57.085	29.630	11.34	0.00	37.52	3.96
2502	2718	9.238368	ACAAAAATGAAATCGAAGGGTTATCTA	57.762	29.630	0.00	0.00	0.00	1.98
2514	2730	6.020281	TCGGTGTTCAAACAAAAATGAAATCG	60.020	34.615	0.00	0.00	41.21	3.34
2550	2766	5.068591	ACCACAAAACTAATCACCTGGAAAC	59.931	40.000	0.00	0.00	0.00	2.78
2598	2814	3.313526	GCACTTAGCATCCAGTTGTATGG	59.686	47.826	0.00	0.00	44.79	2.74
2666	2882	7.890515	TGGCACAAGTTCATGATTATTAACAA	58.109	30.769	0.00	0.00	31.92	2.83
2704	2953	3.284449	AAAACCGCCGGCTGTCAC	61.284	61.111	24.43	0.00	0.00	3.67
2709	2958	1.950973	AAACAACAAAACCGCCGGCT	61.951	50.000	26.68	2.78	0.00	5.52
2726	2975	4.199432	TGACTGCAAAAGCTTGGAAAAA	57.801	36.364	0.00	0.00	31.84	1.94
2766	3016	4.520492	GCACCACCAGCTTATTATGCTTAT	59.480	41.667	1.52	0.00	38.92	1.73
2925	3175	7.783090	ATCAAGTAGATTCACATTAGCACAG	57.217	36.000	0.00	0.00	31.20	3.66
2940	3190	6.115446	CCAACCTGCATTTCTATCAAGTAGA	58.885	40.000	0.00	0.00	37.65	2.59
2942	3192	4.640201	GCCAACCTGCATTTCTATCAAGTA	59.360	41.667	0.00	0.00	0.00	2.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.