Multiple sequence alignment - TraesCS3A01G019500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G019500 chr3A 100.000 4468 0 0 1 4468 11814176 11809709 0.000000e+00 8251.0
1 TraesCS3A01G019500 chr3A 76.316 190 34 8 3549 3728 598982210 598982022 1.710000e-14 91.6
2 TraesCS3A01G019500 chrUn 91.735 1706 100 22 1557 3225 35129662 35127961 0.000000e+00 2331.0
3 TraesCS3A01G019500 chrUn 90.973 997 51 9 598 1562 35130691 35129702 0.000000e+00 1308.0
4 TraesCS3A01G019500 chrUn 86.044 1125 116 26 3370 4467 35127885 35126775 0.000000e+00 1170.0
5 TraesCS3A01G019500 chrUn 88.697 522 49 6 3952 4468 35763072 35763588 2.930000e-176 628.0
6 TraesCS3A01G019500 chrUn 88.697 522 49 6 3952 4468 309685960 309685444 2.930000e-176 628.0
7 TraesCS3A01G019500 chrUn 93.061 245 15 2 3722 3965 341713847 341714090 1.530000e-94 357.0
8 TraesCS3A01G019500 chr5B 91.735 1706 100 22 1557 3225 670520812 670522513 0.000000e+00 2331.0
9 TraesCS3A01G019500 chr5B 86.044 1125 116 26 3370 4467 670522589 670523699 0.000000e+00 1170.0
10 TraesCS3A01G019500 chr5B 93.248 311 21 0 1252 1562 670520462 670520772 4.070000e-125 459.0
11 TraesCS3A01G019500 chr3D 90.850 1388 61 19 212 1562 9311870 9313228 0.000000e+00 1799.0
12 TraesCS3A01G019500 chr3D 93.548 1085 66 3 1557 2641 9313268 9314348 0.000000e+00 1613.0
13 TraesCS3A01G019500 chr3D 92.970 825 47 7 3646 4467 9316406 9317222 0.000000e+00 1192.0
14 TraesCS3A01G019500 chr3D 89.490 961 69 18 2514 3460 9314279 9315221 0.000000e+00 1186.0
15 TraesCS3A01G019500 chr3D 93.333 240 16 0 3405 3644 9315223 9315462 5.500000e-94 355.0
16 TraesCS3A01G019500 chr3D 92.453 53 4 0 127 179 9311820 9311872 4.790000e-10 76.8
17 TraesCS3A01G019500 chr3B 83.061 490 66 12 2683 3168 759794315 759794791 3.190000e-116 429.0
18 TraesCS3A01G019500 chr3B 84.746 236 32 4 2930 3163 26504741 26504974 2.690000e-57 233.0
19 TraesCS3A01G019500 chr1D 81.564 537 73 21 2655 3172 478357112 478357641 1.920000e-113 420.0
20 TraesCS3A01G019500 chr1D 79.290 507 75 18 1075 1551 478352779 478353285 1.200000e-85 327.0
21 TraesCS3A01G019500 chr1D 82.530 166 26 3 3565 3728 488548071 488547907 4.660000e-30 143.0
22 TraesCS3A01G019500 chr1D 82.759 87 12 3 3582 3666 348009783 348009698 1.720000e-09 75.0
23 TraesCS3A01G019500 chr1A 81.984 494 72 8 1075 1551 574635981 574636474 1.940000e-108 403.0
24 TraesCS3A01G019500 chr1A 76.978 695 123 16 1702 2378 574639191 574639866 3.280000e-96 363.0
25 TraesCS3A01G019500 chr1B 82.174 460 61 13 2731 3172 666256218 666256674 4.220000e-100 375.0
26 TraesCS3A01G019500 chr7D 86.134 238 27 6 2930 3164 99792725 99792491 7.420000e-63 252.0
27 TraesCS3A01G019500 chr7D 77.019 161 30 7 3571 3728 161930692 161930536 7.960000e-13 86.1
28 TraesCS3A01G019500 chr7A 86.076 237 29 4 2930 3164 102096620 102096854 7.420000e-63 252.0
29 TraesCS3A01G019500 chr5A 87.654 81 7 3 3581 3660 44363875 44363953 1.710000e-14 91.6
30 TraesCS3A01G019500 chr5D 78.102 137 17 12 3535 3662 522113279 522113411 1.720000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G019500 chr3A 11809709 11814176 4467 True 8251.000000 8251 100.000000 1 4468 1 chr3A.!!$R1 4467
1 TraesCS3A01G019500 chrUn 35126775 35130691 3916 True 1603.000000 2331 89.584000 598 4467 3 chrUn.!!$R2 3869
2 TraesCS3A01G019500 chrUn 35763072 35763588 516 False 628.000000 628 88.697000 3952 4468 1 chrUn.!!$F1 516
3 TraesCS3A01G019500 chrUn 309685444 309685960 516 True 628.000000 628 88.697000 3952 4468 1 chrUn.!!$R1 516
4 TraesCS3A01G019500 chr5B 670520462 670523699 3237 False 1320.000000 2331 90.342333 1252 4467 3 chr5B.!!$F1 3215
5 TraesCS3A01G019500 chr3D 9311820 9317222 5402 False 1036.966667 1799 92.107333 127 4467 6 chr3D.!!$F1 4340
6 TraesCS3A01G019500 chr1D 478352779 478357641 4862 False 373.500000 420 80.427000 1075 3172 2 chr1D.!!$F1 2097
7 TraesCS3A01G019500 chr1A 574635981 574639866 3885 False 383.000000 403 79.481000 1075 2378 2 chr1A.!!$F1 1303

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.181114 GGCTGGGATGTGCACTATGA 59.819 55.0 19.41 0.0 0.00 2.15 F
261 262 0.252558 AGAGAAGGGGGAGCCGTTTA 60.253 55.0 0.00 0.0 0.00 2.01 F
1461 1561 0.674581 CCTTCTGCAAGTCATGGCGA 60.675 55.0 0.00 0.0 33.76 5.54 F
2368 5382 0.976641 CCACAACTGGGCTCTCAGTA 59.023 55.0 2.42 0.0 46.17 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1494 1594 0.797542 CGACGACGAAGAGAAGGACT 59.202 55.000 0.00 0.0 42.66 3.85 R
1515 1615 1.515952 CTCGCTGAAGCTGAGGACG 60.516 63.158 13.08 0.0 37.73 4.79 R
2611 5718 0.105709 CCTCCTCCTCCTCCTCCTTC 60.106 65.000 0.00 0.0 0.00 3.46 R
4257 8463 0.466543 AAGTGTGTAACCACCGAGCA 59.533 50.000 0.00 0.0 41.09 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.121030 CAGTTCGCAAGGGCTCCG 61.121 66.667 0.00 0.00 38.10 4.63
18 19 4.394712 AGTTCGCAAGGGCTCCGG 62.395 66.667 0.00 0.00 38.10 5.14
33 34 4.885426 CGGGAGGATCATTGGTGG 57.115 61.111 0.00 0.00 36.25 4.61
34 35 1.149174 CGGGAGGATCATTGGTGGG 59.851 63.158 0.00 0.00 36.25 4.61
35 36 1.152673 GGGAGGATCATTGGTGGGC 60.153 63.158 0.00 0.00 36.25 5.36
36 37 1.152673 GGAGGATCATTGGTGGGCC 60.153 63.158 0.00 0.00 36.25 5.80
37 38 1.526917 GAGGATCATTGGTGGGCCG 60.527 63.158 0.00 0.00 33.69 6.13
38 39 2.270874 GAGGATCATTGGTGGGCCGT 62.271 60.000 0.00 0.00 33.69 5.68
39 40 2.120909 GGATCATTGGTGGGCCGTG 61.121 63.158 0.00 0.00 37.67 4.94
40 41 2.044053 ATCATTGGTGGGCCGTGG 60.044 61.111 0.00 0.00 37.67 4.94
41 42 2.837031 GATCATTGGTGGGCCGTGGT 62.837 60.000 0.00 0.00 37.67 4.16
42 43 1.567208 ATCATTGGTGGGCCGTGGTA 61.567 55.000 0.00 0.00 37.67 3.25
43 44 1.303724 CATTGGTGGGCCGTGGTAA 60.304 57.895 0.00 0.00 37.67 2.85
44 45 0.896019 CATTGGTGGGCCGTGGTAAA 60.896 55.000 0.00 0.00 37.67 2.01
45 46 0.896479 ATTGGTGGGCCGTGGTAAAC 60.896 55.000 0.00 0.00 37.67 2.01
46 47 2.674033 GGTGGGCCGTGGTAAACC 60.674 66.667 0.00 0.00 0.00 3.27
47 48 2.433004 GTGGGCCGTGGTAAACCT 59.567 61.111 0.00 0.00 36.82 3.50
48 49 1.969589 GTGGGCCGTGGTAAACCTG 60.970 63.158 0.00 0.00 36.82 4.00
49 50 2.433004 GGGCCGTGGTAAACCTGT 59.567 61.111 0.00 0.00 36.82 4.00
50 51 1.228337 GGGCCGTGGTAAACCTGTT 60.228 57.895 0.00 0.00 36.82 3.16
51 52 1.520600 GGGCCGTGGTAAACCTGTTG 61.521 60.000 0.00 0.00 36.82 3.33
52 53 0.535553 GGCCGTGGTAAACCTGTTGA 60.536 55.000 0.02 0.00 36.82 3.18
53 54 1.530323 GCCGTGGTAAACCTGTTGAT 58.470 50.000 0.02 0.00 36.82 2.57
54 55 1.199097 GCCGTGGTAAACCTGTTGATG 59.801 52.381 0.02 0.00 36.82 3.07
55 56 2.500229 CCGTGGTAAACCTGTTGATGT 58.500 47.619 0.02 0.00 36.82 3.06
56 57 2.225491 CCGTGGTAAACCTGTTGATGTG 59.775 50.000 0.02 0.00 36.82 3.21
57 58 3.135225 CGTGGTAAACCTGTTGATGTGA 58.865 45.455 0.02 0.00 36.82 3.58
58 59 3.751175 CGTGGTAAACCTGTTGATGTGAT 59.249 43.478 0.02 0.00 36.82 3.06
59 60 4.378356 CGTGGTAAACCTGTTGATGTGATG 60.378 45.833 0.02 0.00 36.82 3.07
60 61 4.759693 GTGGTAAACCTGTTGATGTGATGA 59.240 41.667 0.02 0.00 36.82 2.92
61 62 5.240623 GTGGTAAACCTGTTGATGTGATGAA 59.759 40.000 0.02 0.00 36.82 2.57
62 63 6.009589 TGGTAAACCTGTTGATGTGATGAAT 58.990 36.000 0.02 0.00 36.82 2.57
63 64 6.150976 TGGTAAACCTGTTGATGTGATGAATC 59.849 38.462 0.02 0.00 36.82 2.52
64 65 6.150976 GGTAAACCTGTTGATGTGATGAATCA 59.849 38.462 0.00 0.00 32.24 2.57
65 66 5.892160 AACCTGTTGATGTGATGAATCAG 57.108 39.130 0.00 0.00 37.51 2.90
66 67 4.267536 ACCTGTTGATGTGATGAATCAGG 58.732 43.478 0.00 0.00 44.39 3.86
67 68 3.066342 CCTGTTGATGTGATGAATCAGGC 59.934 47.826 0.00 0.00 37.51 4.85
68 69 3.945921 CTGTTGATGTGATGAATCAGGCT 59.054 43.478 0.00 0.00 37.51 4.58
69 70 3.692593 TGTTGATGTGATGAATCAGGCTG 59.307 43.478 8.58 8.58 37.51 4.85
70 71 2.927028 TGATGTGATGAATCAGGCTGG 58.073 47.619 15.73 0.00 37.51 4.85
71 72 2.228059 GATGTGATGAATCAGGCTGGG 58.772 52.381 15.73 0.00 37.51 4.45
72 73 1.288188 TGTGATGAATCAGGCTGGGA 58.712 50.000 15.73 0.00 37.51 4.37
73 74 1.848388 TGTGATGAATCAGGCTGGGAT 59.152 47.619 15.73 0.00 37.51 3.85
74 75 2.228059 GTGATGAATCAGGCTGGGATG 58.772 52.381 15.73 0.00 37.51 3.51
75 76 1.848388 TGATGAATCAGGCTGGGATGT 59.152 47.619 15.73 0.00 32.11 3.06
76 77 2.228059 GATGAATCAGGCTGGGATGTG 58.772 52.381 15.73 0.00 0.00 3.21
77 78 0.394762 TGAATCAGGCTGGGATGTGC 60.395 55.000 15.73 0.00 0.00 4.57
78 79 0.394762 GAATCAGGCTGGGATGTGCA 60.395 55.000 15.73 0.00 0.00 4.57
79 80 0.682209 AATCAGGCTGGGATGTGCAC 60.682 55.000 15.73 10.75 0.00 4.57
80 81 1.569030 ATCAGGCTGGGATGTGCACT 61.569 55.000 19.41 3.19 0.00 4.40
81 82 0.909133 TCAGGCTGGGATGTGCACTA 60.909 55.000 19.41 4.84 0.00 2.74
82 83 0.182061 CAGGCTGGGATGTGCACTAT 59.818 55.000 19.41 9.88 0.00 2.12
83 84 0.182061 AGGCTGGGATGTGCACTATG 59.818 55.000 19.41 3.69 0.00 2.23
84 85 0.181114 GGCTGGGATGTGCACTATGA 59.819 55.000 19.41 0.00 0.00 2.15
85 86 1.408683 GGCTGGGATGTGCACTATGAA 60.409 52.381 19.41 0.00 0.00 2.57
86 87 1.945394 GCTGGGATGTGCACTATGAAG 59.055 52.381 19.41 11.20 0.00 3.02
87 88 2.569059 CTGGGATGTGCACTATGAAGG 58.431 52.381 19.41 0.00 0.00 3.46
88 89 2.171237 CTGGGATGTGCACTATGAAGGA 59.829 50.000 19.41 0.00 0.00 3.36
89 90 2.171237 TGGGATGTGCACTATGAAGGAG 59.829 50.000 19.41 0.00 0.00 3.69
90 91 2.216898 GGATGTGCACTATGAAGGAGC 58.783 52.381 19.41 0.00 0.00 4.70
91 92 2.420547 GGATGTGCACTATGAAGGAGCA 60.421 50.000 19.41 0.00 36.08 4.26
92 93 3.474600 GATGTGCACTATGAAGGAGCAT 58.525 45.455 19.41 0.00 39.20 3.79
93 94 4.503817 GGATGTGCACTATGAAGGAGCATA 60.504 45.833 19.41 0.00 39.20 3.14
94 95 4.694760 TGTGCACTATGAAGGAGCATAT 57.305 40.909 19.41 0.00 39.20 1.78
95 96 5.039920 TGTGCACTATGAAGGAGCATATT 57.960 39.130 19.41 0.00 39.20 1.28
96 97 4.818005 TGTGCACTATGAAGGAGCATATTG 59.182 41.667 19.41 0.00 39.20 1.90
97 98 5.059161 GTGCACTATGAAGGAGCATATTGA 58.941 41.667 10.32 0.00 39.20 2.57
98 99 5.704515 GTGCACTATGAAGGAGCATATTGAT 59.295 40.000 10.32 0.00 39.20 2.57
99 100 5.704053 TGCACTATGAAGGAGCATATTGATG 59.296 40.000 0.00 0.00 34.93 3.07
112 113 5.521516 CATATTGATGCAGTTACTAGCCG 57.478 43.478 0.00 0.00 0.00 5.52
113 114 2.309528 TTGATGCAGTTACTAGCCGG 57.690 50.000 0.00 0.00 0.00 6.13
114 115 1.480789 TGATGCAGTTACTAGCCGGA 58.519 50.000 5.05 0.00 0.00 5.14
115 116 1.828595 TGATGCAGTTACTAGCCGGAA 59.171 47.619 5.05 0.00 0.00 4.30
116 117 2.202566 GATGCAGTTACTAGCCGGAAC 58.797 52.381 5.05 0.00 0.00 3.62
117 118 0.970640 TGCAGTTACTAGCCGGAACA 59.029 50.000 5.05 0.00 0.00 3.18
118 119 1.345089 TGCAGTTACTAGCCGGAACAA 59.655 47.619 5.05 0.00 0.00 2.83
119 120 2.224329 TGCAGTTACTAGCCGGAACAAA 60.224 45.455 5.05 0.00 0.00 2.83
120 121 2.809696 GCAGTTACTAGCCGGAACAAAA 59.190 45.455 5.05 0.00 0.00 2.44
121 122 3.251487 GCAGTTACTAGCCGGAACAAAAA 59.749 43.478 5.05 0.00 0.00 1.94
122 123 4.082949 GCAGTTACTAGCCGGAACAAAAAT 60.083 41.667 5.05 0.00 0.00 1.82
123 124 5.390613 CAGTTACTAGCCGGAACAAAAATG 58.609 41.667 5.05 0.00 0.00 2.32
124 125 5.180492 CAGTTACTAGCCGGAACAAAAATGA 59.820 40.000 5.05 0.00 0.00 2.57
125 126 5.411669 AGTTACTAGCCGGAACAAAAATGAG 59.588 40.000 5.05 0.00 0.00 2.90
126 127 3.081804 ACTAGCCGGAACAAAAATGAGG 58.918 45.455 5.05 0.00 0.00 3.86
127 128 0.603065 AGCCGGAACAAAAATGAGGC 59.397 50.000 5.05 0.00 43.07 4.70
128 129 0.316841 GCCGGAACAAAAATGAGGCA 59.683 50.000 5.05 0.00 42.37 4.75
129 130 1.669795 GCCGGAACAAAAATGAGGCAG 60.670 52.381 5.05 0.00 42.37 4.85
130 131 1.067635 CCGGAACAAAAATGAGGCAGG 60.068 52.381 0.00 0.00 0.00 4.85
131 132 1.885887 CGGAACAAAAATGAGGCAGGA 59.114 47.619 0.00 0.00 0.00 3.86
132 133 2.351738 CGGAACAAAAATGAGGCAGGAC 60.352 50.000 0.00 0.00 0.00 3.85
133 134 2.893489 GGAACAAAAATGAGGCAGGACT 59.107 45.455 0.00 0.00 0.00 3.85
134 135 3.057245 GGAACAAAAATGAGGCAGGACTC 60.057 47.826 0.00 0.00 37.99 3.36
145 146 1.737793 GGCAGGACTCATAAACGTTGG 59.262 52.381 0.00 0.00 0.00 3.77
179 180 1.442773 AGAGGCTGCATATGGATGGT 58.557 50.000 4.56 0.00 33.26 3.55
180 181 1.073444 AGAGGCTGCATATGGATGGTG 59.927 52.381 4.56 0.00 33.26 4.17
181 182 1.072806 GAGGCTGCATATGGATGGTGA 59.927 52.381 4.56 0.00 33.26 4.02
182 183 1.709115 AGGCTGCATATGGATGGTGAT 59.291 47.619 4.56 0.00 33.26 3.06
183 184 1.816835 GGCTGCATATGGATGGTGATG 59.183 52.381 4.56 0.00 33.26 3.07
184 185 1.816835 GCTGCATATGGATGGTGATGG 59.183 52.381 4.56 0.00 33.26 3.51
185 186 2.816712 GCTGCATATGGATGGTGATGGT 60.817 50.000 4.56 0.00 33.26 3.55
186 187 3.559811 GCTGCATATGGATGGTGATGGTA 60.560 47.826 4.56 0.00 33.26 3.25
187 188 4.005650 CTGCATATGGATGGTGATGGTAC 58.994 47.826 4.56 0.00 33.26 3.34
188 189 3.244875 TGCATATGGATGGTGATGGTACC 60.245 47.826 4.43 4.43 41.24 3.34
196 197 2.939460 GGTGATGGTACCAATGTTGC 57.061 50.000 20.76 6.23 40.54 4.17
197 198 2.446435 GGTGATGGTACCAATGTTGCT 58.554 47.619 20.76 0.00 40.54 3.91
198 199 3.616219 GGTGATGGTACCAATGTTGCTA 58.384 45.455 20.76 0.00 40.54 3.49
199 200 3.627577 GGTGATGGTACCAATGTTGCTAG 59.372 47.826 20.76 0.00 40.54 3.42
200 201 4.261801 GTGATGGTACCAATGTTGCTAGT 58.738 43.478 20.76 0.00 0.00 2.57
201 202 5.424757 GTGATGGTACCAATGTTGCTAGTA 58.575 41.667 20.76 0.00 0.00 1.82
202 203 5.293569 GTGATGGTACCAATGTTGCTAGTAC 59.706 44.000 20.76 1.23 34.01 2.73
203 204 3.852286 TGGTACCAATGTTGCTAGTACG 58.148 45.455 13.60 0.00 35.28 3.67
204 205 3.192466 GGTACCAATGTTGCTAGTACGG 58.808 50.000 7.15 0.00 35.28 4.02
205 206 1.734163 ACCAATGTTGCTAGTACGGC 58.266 50.000 6.87 6.87 0.00 5.68
206 207 1.278127 ACCAATGTTGCTAGTACGGCT 59.722 47.619 13.32 0.00 0.00 5.52
207 208 1.665679 CCAATGTTGCTAGTACGGCTG 59.334 52.381 13.32 0.00 0.00 4.85
208 209 2.616960 CAATGTTGCTAGTACGGCTGA 58.383 47.619 0.00 2.32 0.00 4.26
209 210 2.586258 ATGTTGCTAGTACGGCTGAG 57.414 50.000 0.00 0.00 0.00 3.35
210 211 0.530744 TGTTGCTAGTACGGCTGAGG 59.469 55.000 0.00 0.00 0.00 3.86
211 212 0.531200 GTTGCTAGTACGGCTGAGGT 59.469 55.000 0.00 0.00 0.00 3.85
212 213 0.530744 TTGCTAGTACGGCTGAGGTG 59.469 55.000 0.00 0.00 0.00 4.00
213 214 1.320344 TGCTAGTACGGCTGAGGTGG 61.320 60.000 0.00 0.00 0.00 4.61
223 224 2.447572 TGAGGTGGCACCAGGTGA 60.448 61.111 36.28 9.59 41.95 4.02
236 237 0.449388 CAGGTGAAATTCTGGCGCTC 59.551 55.000 7.64 0.00 0.00 5.03
244 245 2.408271 ATTCTGGCGCTCATTGAAGA 57.592 45.000 7.64 0.00 0.00 2.87
256 257 0.922626 ATTGAAGAGAAGGGGGAGCC 59.077 55.000 0.00 0.00 0.00 4.70
261 262 0.252558 AGAGAAGGGGGAGCCGTTTA 60.253 55.000 0.00 0.00 0.00 2.01
278 279 5.751509 GCCGTTTATCTTTGGTTTTTCTTGT 59.248 36.000 0.00 0.00 0.00 3.16
279 280 6.256975 GCCGTTTATCTTTGGTTTTTCTTGTT 59.743 34.615 0.00 0.00 0.00 2.83
290 291 1.925229 TTTCTTGTTGTGCTTGCAGC 58.075 45.000 0.00 1.70 42.82 5.25
306 307 1.375523 AGCGCCGTAAAGTCAAGGG 60.376 57.895 2.29 0.00 0.00 3.95
322 323 2.290287 GGGCGGGGGCAATTTTTCT 61.290 57.895 0.00 0.00 0.00 2.52
394 395 5.682943 TCAGTTTTATGTGTCTTTTCCCG 57.317 39.130 0.00 0.00 0.00 5.14
403 404 6.827586 ATGTGTCTTTTCCCGCTTATTTTA 57.172 33.333 0.00 0.00 0.00 1.52
404 405 6.004408 TGTGTCTTTTCCCGCTTATTTTAC 57.996 37.500 0.00 0.00 0.00 2.01
405 406 5.766174 TGTGTCTTTTCCCGCTTATTTTACT 59.234 36.000 0.00 0.00 0.00 2.24
459 471 4.444720 GTGTTAAGAAGACACTCGACAAGG 59.555 45.833 0.46 0.00 43.07 3.61
574 589 8.082852 AGTCAGTATAGTTATCGGCACAATAAG 58.917 37.037 0.00 0.00 0.00 1.73
576 591 7.014905 TCAGTATAGTTATCGGCACAATAAGGT 59.985 37.037 0.00 0.00 0.00 3.50
669 693 1.860676 GCGTGTGGGCTTCGAATATA 58.139 50.000 0.00 0.00 0.00 0.86
689 713 1.938861 CGTAACACGCAAAGCCACT 59.061 52.632 0.00 0.00 33.65 4.00
860 909 5.221783 ACCTGGGTCGACTTTATGTTTTACT 60.222 40.000 16.46 0.00 0.00 2.24
861 910 5.350640 CCTGGGTCGACTTTATGTTTTACTC 59.649 44.000 16.46 0.00 0.00 2.59
862 911 6.105397 TGGGTCGACTTTATGTTTTACTCT 57.895 37.500 16.46 0.00 0.00 3.24
863 912 7.230849 TGGGTCGACTTTATGTTTTACTCTA 57.769 36.000 16.46 0.00 0.00 2.43
864 913 7.092716 TGGGTCGACTTTATGTTTTACTCTAC 58.907 38.462 16.46 0.00 0.00 2.59
880 929 5.927281 ACTCTACGTAGCATTCCCTTTAA 57.073 39.130 18.00 0.00 0.00 1.52
916 965 3.845178 CTTTGACAAGATGCATGCATGT 58.155 40.909 36.73 30.15 36.70 3.21
1001 1050 3.021695 CCTGAATCCAGTACGTACCTCA 58.978 50.000 21.80 14.66 38.74 3.86
1035 1084 3.058155 TGGTAAAACACACACACACACAC 60.058 43.478 0.00 0.00 0.00 3.82
1036 1085 3.058155 GGTAAAACACACACACACACACA 60.058 43.478 0.00 0.00 0.00 3.72
1037 1086 2.697431 AAACACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
1038 1087 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
1039 1088 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1040 1089 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1072 1128 2.101415 TCTGATATCTGGAGCGTTGTGG 59.899 50.000 9.47 0.00 0.00 4.17
1110 1166 2.187685 CTGCGCATCCTGGTGCTA 59.812 61.111 12.24 7.07 44.39 3.49
1141 1197 0.838122 CCTCCAGTGGTTCCTCCTGT 60.838 60.000 9.54 0.00 37.07 4.00
1314 1414 3.775654 GGCGTCCTGGAGGTCCTG 61.776 72.222 16.94 0.00 36.82 3.86
1323 1423 3.403558 GAGGTCCTGTGGGCTCCC 61.404 72.222 0.00 0.00 0.00 4.30
1338 1438 2.041824 CTCCCATCCTCCTCATCCAT 57.958 55.000 0.00 0.00 0.00 3.41
1428 1528 3.164977 TTGGTGTCCCAGGTCGCA 61.165 61.111 0.00 0.00 43.15 5.10
1455 1555 0.966179 TCTACGCCTTCTGCAAGTCA 59.034 50.000 0.00 0.00 41.33 3.41
1461 1561 0.674581 CCTTCTGCAAGTCATGGCGA 60.675 55.000 0.00 0.00 33.76 5.54
1515 1615 1.514443 CCTTCTCTTCGTCGTCGGC 60.514 63.158 1.55 0.00 37.69 5.54
1617 1807 3.259374 TCTTCTTGTTCGAGGAGAGCAAT 59.741 43.478 0.00 0.00 46.43 3.56
1773 4769 1.153005 GCTAGCTGCTGCCAAGGAT 60.153 57.895 13.43 0.00 40.80 3.24
2350 5364 4.455606 CAGTTACAGGATCTTGGATTCCC 58.544 47.826 9.90 0.00 32.05 3.97
2368 5382 0.976641 CCACAACTGGGCTCTCAGTA 59.023 55.000 2.42 0.00 46.17 2.74
2413 5427 4.631813 GCGAGGAGATAAAAGAAAGCTTGA 59.368 41.667 0.00 0.00 33.79 3.02
2430 5444 3.020026 GAGCGTCTCGTTCGACCGA 62.020 63.158 4.61 4.61 35.22 4.69
2514 5528 3.244596 TGGTCGATGATGGTGGTAAACAA 60.245 43.478 0.00 0.00 0.00 2.83
2550 5564 4.000325 GAGGAGGAGCAGAAGAAAAAGTC 59.000 47.826 0.00 0.00 0.00 3.01
2557 5658 3.810386 AGCAGAAGAAAAAGTCGAAGGAC 59.190 43.478 0.00 0.00 43.76 3.85
2592 5699 1.520494 CAGCAGCAGAAGAAGAAGCA 58.480 50.000 0.00 0.00 0.00 3.91
2602 5709 5.120053 GCAGAAGAAGAAGCAGTAGAAGAAC 59.880 44.000 0.00 0.00 0.00 3.01
2609 5716 6.412362 AGAAGCAGTAGAAGAACAAGAAGA 57.588 37.500 0.00 0.00 0.00 2.87
2611 5718 6.928492 AGAAGCAGTAGAAGAACAAGAAGAAG 59.072 38.462 0.00 0.00 0.00 2.85
2612 5719 6.412362 AGCAGTAGAAGAACAAGAAGAAGA 57.588 37.500 0.00 0.00 0.00 2.87
2613 5720 6.821388 AGCAGTAGAAGAACAAGAAGAAGAA 58.179 36.000 0.00 0.00 0.00 2.52
2614 5721 6.928492 AGCAGTAGAAGAACAAGAAGAAGAAG 59.072 38.462 0.00 0.00 0.00 2.85
2615 5722 6.147000 GCAGTAGAAGAACAAGAAGAAGAAGG 59.853 42.308 0.00 0.00 0.00 3.46
2616 5723 7.437748 CAGTAGAAGAACAAGAAGAAGAAGGA 58.562 38.462 0.00 0.00 0.00 3.36
2617 5724 7.598493 CAGTAGAAGAACAAGAAGAAGAAGGAG 59.402 40.741 0.00 0.00 0.00 3.69
2618 5725 5.863965 AGAAGAACAAGAAGAAGAAGGAGG 58.136 41.667 0.00 0.00 0.00 4.30
2619 5726 5.604650 AGAAGAACAAGAAGAAGAAGGAGGA 59.395 40.000 0.00 0.00 0.00 3.71
2620 5727 5.482163 AGAACAAGAAGAAGAAGGAGGAG 57.518 43.478 0.00 0.00 0.00 3.69
2621 5728 4.285775 AGAACAAGAAGAAGAAGGAGGAGG 59.714 45.833 0.00 0.00 0.00 4.30
2622 5729 3.863086 ACAAGAAGAAGAAGGAGGAGGA 58.137 45.455 0.00 0.00 0.00 3.71
2623 5730 3.837731 ACAAGAAGAAGAAGGAGGAGGAG 59.162 47.826 0.00 0.00 0.00 3.69
2624 5731 3.114643 AGAAGAAGAAGGAGGAGGAGG 57.885 52.381 0.00 0.00 0.00 4.30
2625 5732 2.657459 AGAAGAAGAAGGAGGAGGAGGA 59.343 50.000 0.00 0.00 0.00 3.71
2626 5733 2.846665 AGAAGAAGGAGGAGGAGGAG 57.153 55.000 0.00 0.00 0.00 3.69
2627 5734 1.290732 AGAAGAAGGAGGAGGAGGAGG 59.709 57.143 0.00 0.00 0.00 4.30
2628 5735 1.289530 GAAGAAGGAGGAGGAGGAGGA 59.710 57.143 0.00 0.00 0.00 3.71
2629 5736 0.933700 AGAAGGAGGAGGAGGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
2630 5737 0.105709 GAAGGAGGAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
2631 5738 0.556380 AAGGAGGAGGAGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
2632 5739 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2633 5740 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2634 5741 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
2635 5742 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2636 5743 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2637 5744 2.123033 GGAGGAGGAGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
2638 5745 2.693017 GAGGAGGAGGAGGAGGCA 59.307 66.667 0.00 0.00 0.00 4.75
2639 5746 1.457455 GAGGAGGAGGAGGAGGCAG 60.457 68.421 0.00 0.00 0.00 4.85
2640 5747 1.938596 AGGAGGAGGAGGAGGCAGA 60.939 63.158 0.00 0.00 0.00 4.26
2641 5748 1.457455 GGAGGAGGAGGAGGCAGAG 60.457 68.421 0.00 0.00 0.00 3.35
2642 5749 1.457455 GAGGAGGAGGAGGCAGAGG 60.457 68.421 0.00 0.00 0.00 3.69
2643 5750 2.445654 GGAGGAGGAGGCAGAGGG 60.446 72.222 0.00 0.00 0.00 4.30
2644 5751 2.445654 GAGGAGGAGGCAGAGGGG 60.446 72.222 0.00 0.00 0.00 4.79
2645 5752 2.955246 AGGAGGAGGCAGAGGGGA 60.955 66.667 0.00 0.00 0.00 4.81
2646 5753 2.041265 GGAGGAGGCAGAGGGGAA 59.959 66.667 0.00 0.00 0.00 3.97
2647 5754 1.616628 GGAGGAGGCAGAGGGGAAA 60.617 63.158 0.00 0.00 0.00 3.13
2648 5755 0.990818 GGAGGAGGCAGAGGGGAAAT 60.991 60.000 0.00 0.00 0.00 2.17
2649 5756 1.695989 GGAGGAGGCAGAGGGGAAATA 60.696 57.143 0.00 0.00 0.00 1.40
2650 5757 1.696884 GAGGAGGCAGAGGGGAAATAG 59.303 57.143 0.00 0.00 0.00 1.73
2651 5758 1.295292 AGGAGGCAGAGGGGAAATAGA 59.705 52.381 0.00 0.00 0.00 1.98
2652 5759 2.127708 GGAGGCAGAGGGGAAATAGAA 58.872 52.381 0.00 0.00 0.00 2.10
2653 5760 2.158740 GGAGGCAGAGGGGAAATAGAAC 60.159 54.545 0.00 0.00 0.00 3.01
2760 5915 0.550914 ACCTGCTCAACTTCAACCCA 59.449 50.000 0.00 0.00 0.00 4.51
2817 5972 2.097038 CGAAGCCGTTGAGGAGCTG 61.097 63.158 0.00 0.00 45.00 4.24
2881 6036 4.160439 AGAAGGACGTCAATGAGCTCATTA 59.840 41.667 35.25 22.56 44.10 1.90
3227 6400 5.276868 CGCCGGTTACTTGATTCTATTTCTG 60.277 44.000 1.90 0.00 0.00 3.02
3232 6405 6.092259 GGTTACTTGATTCTATTTCTGCGTGT 59.908 38.462 0.00 0.00 0.00 4.49
3237 6410 1.078709 TCTATTTCTGCGTGTGCTGC 58.921 50.000 0.00 0.00 43.34 5.25
3346 6526 1.207390 GCTGCTTGCTAGTCGATCTG 58.793 55.000 0.00 0.00 38.95 2.90
3348 6528 1.135915 CTGCTTGCTAGTCGATCTGGT 59.864 52.381 0.00 0.00 0.00 4.00
3349 6529 2.359214 CTGCTTGCTAGTCGATCTGGTA 59.641 50.000 0.00 0.00 0.00 3.25
3350 6530 2.959030 TGCTTGCTAGTCGATCTGGTAT 59.041 45.455 0.00 0.00 0.00 2.73
3351 6531 3.243535 TGCTTGCTAGTCGATCTGGTATG 60.244 47.826 0.00 0.00 0.00 2.39
3352 6532 3.312828 CTTGCTAGTCGATCTGGTATGC 58.687 50.000 0.00 0.00 0.00 3.14
3353 6533 1.266989 TGCTAGTCGATCTGGTATGCG 59.733 52.381 0.00 0.00 0.00 4.73
3354 6534 1.401670 GCTAGTCGATCTGGTATGCGG 60.402 57.143 0.00 0.00 0.00 5.69
3355 6535 0.596577 TAGTCGATCTGGTATGCGGC 59.403 55.000 0.00 0.00 0.00 6.53
3356 6536 1.109920 AGTCGATCTGGTATGCGGCT 61.110 55.000 0.00 0.00 33.40 5.52
3357 6537 0.596577 GTCGATCTGGTATGCGGCTA 59.403 55.000 0.00 0.00 0.00 3.93
3358 6538 0.596577 TCGATCTGGTATGCGGCTAC 59.403 55.000 0.00 1.44 0.00 3.58
3359 6539 0.388649 CGATCTGGTATGCGGCTACC 60.389 60.000 16.74 16.74 41.39 3.18
3360 6540 0.969894 GATCTGGTATGCGGCTACCT 59.030 55.000 21.21 8.48 41.54 3.08
3361 6541 0.681733 ATCTGGTATGCGGCTACCTG 59.318 55.000 21.21 20.38 41.54 4.00
3362 6542 0.396556 TCTGGTATGCGGCTACCTGA 60.397 55.000 22.07 22.07 43.43 3.86
3363 6543 0.249489 CTGGTATGCGGCTACCTGAC 60.249 60.000 21.21 4.78 41.02 3.51
3364 6544 1.069258 GGTATGCGGCTACCTGACC 59.931 63.158 16.47 5.86 38.51 4.02
3396 6578 0.459759 TTGTTGTCGTACGTGTGCCA 60.460 50.000 16.05 4.39 0.00 4.92
3415 6597 3.786635 CCACCAAAGATAGACTTCTCCG 58.213 50.000 0.00 0.00 37.93 4.63
3418 6600 2.432510 CCAAAGATAGACTTCTCCGGCT 59.567 50.000 0.00 0.00 37.93 5.52
3419 6601 3.637229 CCAAAGATAGACTTCTCCGGCTA 59.363 47.826 0.00 0.00 37.93 3.93
3441 6680 7.308435 GCTACAATGGATGTGCCTTAATATTC 58.692 38.462 0.00 0.00 43.77 1.75
3533 6778 6.560253 ATCATTACTATCACAAATTCCGGC 57.440 37.500 0.00 0.00 0.00 6.13
3555 6800 4.731193 GCGCGTTGCAAAGGGTTATAAATA 60.731 41.667 25.44 0.00 45.45 1.40
3632 6885 9.986157 ATTATCAAATTCTGCCCATCATATACT 57.014 29.630 0.00 0.00 0.00 2.12
3644 6897 9.106977 TGCCCATCATATACTTACCTAAATACA 57.893 33.333 0.00 0.00 0.00 2.29
3723 7918 5.009210 TGTGTGGTAAGTCAATAAAAGGTGC 59.991 40.000 0.00 0.00 0.00 5.01
3763 7958 2.391389 GGCTCTTGTTCCCGCTTCG 61.391 63.158 0.00 0.00 0.00 3.79
3775 7970 1.004927 CCCGCTTCGATGAAATTCGAC 60.005 52.381 1.89 0.00 46.94 4.20
3805 8000 8.854614 ATGGCTTCAAAGGAACATATACTATC 57.145 34.615 0.00 0.00 0.00 2.08
3859 8054 7.442062 CCAATACTGCTCACCAAAAATCTTTTT 59.558 33.333 0.00 0.00 40.75 1.94
3956 8157 7.682787 AGACCTCAACCTCTGTATCATTATT 57.317 36.000 0.00 0.00 0.00 1.40
4011 8212 5.347907 CCGAGTACAAATCAAAGGTAGTGAC 59.652 44.000 0.00 0.00 0.00 3.67
4022 8223 0.971386 GGTAGTGACGGAAAGGGTGA 59.029 55.000 0.00 0.00 0.00 4.02
4026 8227 0.245539 GTGACGGAAAGGGTGATCGA 59.754 55.000 0.00 0.00 0.00 3.59
4111 8312 1.004979 GCAACCTTGGTACCATGGGTA 59.995 52.381 37.06 15.80 43.17 3.69
4127 8329 3.307906 TAACACGGGTGCGGCTCT 61.308 61.111 0.00 0.00 0.00 4.09
4143 8345 3.206150 GGCTCTGAGTGAAAACTTGACA 58.794 45.455 6.53 0.00 0.00 3.58
4202 8404 0.682852 CCCTCTTGGTGGTGTCGTTA 59.317 55.000 0.00 0.00 0.00 3.18
4218 8420 0.106669 GTTATGGGTCCCCTCCTTGC 60.107 60.000 5.13 0.00 36.94 4.01
4257 8463 8.561738 TTGAAAACTCTAGTCTCACTTTTTGT 57.438 30.769 0.00 0.00 0.00 2.83
4271 8477 2.039818 TTTTGTGCTCGGTGGTTACA 57.960 45.000 0.00 0.00 0.00 2.41
4298 8504 2.507324 GCGGAGTCGTGGAGCTTC 60.507 66.667 0.00 0.00 38.89 3.86
4299 8505 2.202492 CGGAGTCGTGGAGCTTCG 60.202 66.667 0.00 0.00 0.00 3.79
4366 8580 1.293924 CTGGCATGTAGCTTTCTCGG 58.706 55.000 0.00 0.00 44.79 4.63
4421 8635 9.276590 CTTATCTATTACATCTTGTTGCCATCA 57.723 33.333 0.00 0.00 0.00 3.07
4427 8641 3.376234 ACATCTTGTTGCCATCATTCTCG 59.624 43.478 0.00 0.00 0.00 4.04
4432 8646 1.089481 TTGCCATCATTCTCGGTCGC 61.089 55.000 0.00 0.00 0.00 5.19
4456 8670 1.264749 ATCTCCTGGCAGTAACGGCA 61.265 55.000 14.43 0.00 39.46 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.121030 CGGAGCCCTTGCGAACTG 61.121 66.667 0.00 0.00 44.18 3.16
1 2 4.394712 CCGGAGCCCTTGCGAACT 62.395 66.667 0.00 0.00 44.18 3.01
7 8 2.770048 ATCCTCCCGGAGCCCTTG 60.770 66.667 9.17 0.00 44.06 3.61
8 9 2.446802 GATCCTCCCGGAGCCCTT 60.447 66.667 9.17 0.00 44.06 3.95
10 11 2.150051 AATGATCCTCCCGGAGCCC 61.150 63.158 9.17 0.86 45.19 5.19
12 13 1.072159 CCAATGATCCTCCCGGAGC 59.928 63.158 9.17 0.00 45.98 4.70
13 14 0.107456 CACCAATGATCCTCCCGGAG 59.893 60.000 0.73 7.56 44.06 4.63
15 16 1.149174 CCACCAATGATCCTCCCGG 59.851 63.158 0.00 0.00 0.00 5.73
16 17 1.149174 CCCACCAATGATCCTCCCG 59.851 63.158 0.00 0.00 0.00 5.14
17 18 1.152673 GCCCACCAATGATCCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
18 19 1.152673 GGCCCACCAATGATCCTCC 60.153 63.158 0.00 0.00 35.26 4.30
19 20 1.526917 CGGCCCACCAATGATCCTC 60.527 63.158 0.00 0.00 34.57 3.71
20 21 2.308722 ACGGCCCACCAATGATCCT 61.309 57.895 0.00 0.00 34.57 3.24
21 22 2.120909 CACGGCCCACCAATGATCC 61.121 63.158 0.00 0.00 34.57 3.36
22 23 2.120909 CCACGGCCCACCAATGATC 61.121 63.158 0.00 0.00 34.57 2.92
23 24 1.567208 TACCACGGCCCACCAATGAT 61.567 55.000 0.00 0.00 34.57 2.45
24 25 1.780107 TTACCACGGCCCACCAATGA 61.780 55.000 0.00 0.00 34.57 2.57
25 26 0.896019 TTTACCACGGCCCACCAATG 60.896 55.000 0.00 0.00 34.57 2.82
26 27 0.896479 GTTTACCACGGCCCACCAAT 60.896 55.000 0.00 0.00 34.57 3.16
27 28 1.528776 GTTTACCACGGCCCACCAA 60.529 57.895 0.00 0.00 34.57 3.67
28 29 2.113562 GTTTACCACGGCCCACCA 59.886 61.111 0.00 0.00 34.57 4.17
29 30 2.674033 GGTTTACCACGGCCCACC 60.674 66.667 0.00 0.00 35.64 4.61
30 31 1.969589 CAGGTTTACCACGGCCCAC 60.970 63.158 0.00 0.00 38.89 4.61
31 32 1.997256 AACAGGTTTACCACGGCCCA 61.997 55.000 0.00 0.00 38.89 5.36
32 33 1.228337 AACAGGTTTACCACGGCCC 60.228 57.895 0.00 0.00 38.89 5.80
33 34 0.535553 TCAACAGGTTTACCACGGCC 60.536 55.000 1.13 0.00 38.89 6.13
34 35 1.199097 CATCAACAGGTTTACCACGGC 59.801 52.381 1.13 0.00 38.89 5.68
35 36 2.225491 CACATCAACAGGTTTACCACGG 59.775 50.000 1.13 0.00 38.89 4.94
36 37 3.135225 TCACATCAACAGGTTTACCACG 58.865 45.455 1.13 0.00 38.89 4.94
37 38 4.759693 TCATCACATCAACAGGTTTACCAC 59.240 41.667 1.13 0.00 38.89 4.16
38 39 4.979335 TCATCACATCAACAGGTTTACCA 58.021 39.130 1.13 0.00 38.89 3.25
39 40 5.957842 TTCATCACATCAACAGGTTTACC 57.042 39.130 0.00 0.00 0.00 2.85
40 41 7.144722 TGATTCATCACATCAACAGGTTTAC 57.855 36.000 0.00 0.00 0.00 2.01
41 42 6.375174 CCTGATTCATCACATCAACAGGTTTA 59.625 38.462 0.00 0.00 38.83 2.01
42 43 5.184479 CCTGATTCATCACATCAACAGGTTT 59.816 40.000 0.00 0.00 38.83 3.27
43 44 4.703575 CCTGATTCATCACATCAACAGGTT 59.296 41.667 0.00 0.00 38.83 3.50
44 45 4.267536 CCTGATTCATCACATCAACAGGT 58.732 43.478 0.00 0.00 38.83 4.00
45 46 3.066342 GCCTGATTCATCACATCAACAGG 59.934 47.826 0.00 0.00 44.15 4.00
46 47 3.945921 AGCCTGATTCATCACATCAACAG 59.054 43.478 0.00 0.00 30.12 3.16
47 48 3.692593 CAGCCTGATTCATCACATCAACA 59.307 43.478 0.00 0.00 30.12 3.33
48 49 3.066342 CCAGCCTGATTCATCACATCAAC 59.934 47.826 0.00 0.00 30.12 3.18
49 50 3.284617 CCAGCCTGATTCATCACATCAA 58.715 45.455 0.00 0.00 30.12 2.57
50 51 2.422377 CCCAGCCTGATTCATCACATCA 60.422 50.000 0.00 0.00 32.50 3.07
51 52 2.158711 TCCCAGCCTGATTCATCACATC 60.159 50.000 0.00 0.00 32.50 3.06
52 53 1.848388 TCCCAGCCTGATTCATCACAT 59.152 47.619 0.00 0.00 32.50 3.21
53 54 1.288188 TCCCAGCCTGATTCATCACA 58.712 50.000 0.00 0.00 32.50 3.58
54 55 2.228059 CATCCCAGCCTGATTCATCAC 58.772 52.381 0.00 0.00 32.50 3.06
55 56 1.848388 ACATCCCAGCCTGATTCATCA 59.152 47.619 0.00 0.00 35.16 3.07
56 57 2.228059 CACATCCCAGCCTGATTCATC 58.772 52.381 0.00 0.00 0.00 2.92
57 58 1.753141 GCACATCCCAGCCTGATTCAT 60.753 52.381 0.00 0.00 0.00 2.57
58 59 0.394762 GCACATCCCAGCCTGATTCA 60.395 55.000 0.00 0.00 0.00 2.57
59 60 0.394762 TGCACATCCCAGCCTGATTC 60.395 55.000 0.00 0.00 0.00 2.52
60 61 0.682209 GTGCACATCCCAGCCTGATT 60.682 55.000 13.17 0.00 0.00 2.57
61 62 1.077212 GTGCACATCCCAGCCTGAT 60.077 57.895 13.17 0.00 0.00 2.90
62 63 0.909133 TAGTGCACATCCCAGCCTGA 60.909 55.000 21.04 0.00 0.00 3.86
63 64 0.182061 ATAGTGCACATCCCAGCCTG 59.818 55.000 21.04 0.00 0.00 4.85
64 65 0.182061 CATAGTGCACATCCCAGCCT 59.818 55.000 21.04 0.00 0.00 4.58
65 66 0.181114 TCATAGTGCACATCCCAGCC 59.819 55.000 21.04 0.00 0.00 4.85
66 67 1.945394 CTTCATAGTGCACATCCCAGC 59.055 52.381 21.04 0.00 0.00 4.85
67 68 2.171237 TCCTTCATAGTGCACATCCCAG 59.829 50.000 21.04 8.88 0.00 4.45
68 69 2.171237 CTCCTTCATAGTGCACATCCCA 59.829 50.000 21.04 0.00 0.00 4.37
69 70 2.843701 CTCCTTCATAGTGCACATCCC 58.156 52.381 21.04 0.00 0.00 3.85
70 71 2.216898 GCTCCTTCATAGTGCACATCC 58.783 52.381 21.04 0.00 0.00 3.51
71 72 2.910199 TGCTCCTTCATAGTGCACATC 58.090 47.619 21.04 0.00 0.00 3.06
72 73 3.572632 ATGCTCCTTCATAGTGCACAT 57.427 42.857 21.04 7.78 33.75 3.21
73 74 4.694760 ATATGCTCCTTCATAGTGCACA 57.305 40.909 21.04 5.47 33.75 4.57
74 75 5.059161 TCAATATGCTCCTTCATAGTGCAC 58.941 41.667 9.40 9.40 41.86 4.57
75 76 5.294734 TCAATATGCTCCTTCATAGTGCA 57.705 39.130 6.40 0.00 41.86 4.57
76 77 6.179504 CATCAATATGCTCCTTCATAGTGC 57.820 41.667 6.40 0.00 41.86 4.40
90 91 4.389992 CCGGCTAGTAACTGCATCAATATG 59.610 45.833 0.00 0.00 36.09 1.78
91 92 4.283467 TCCGGCTAGTAACTGCATCAATAT 59.717 41.667 0.00 0.00 0.00 1.28
92 93 3.639561 TCCGGCTAGTAACTGCATCAATA 59.360 43.478 0.00 0.00 0.00 1.90
93 94 2.434336 TCCGGCTAGTAACTGCATCAAT 59.566 45.455 0.00 0.00 0.00 2.57
94 95 1.828595 TCCGGCTAGTAACTGCATCAA 59.171 47.619 0.00 0.00 0.00 2.57
95 96 1.480789 TCCGGCTAGTAACTGCATCA 58.519 50.000 0.00 0.00 0.00 3.07
96 97 2.202566 GTTCCGGCTAGTAACTGCATC 58.797 52.381 0.00 0.00 0.00 3.91
97 98 1.553248 TGTTCCGGCTAGTAACTGCAT 59.447 47.619 0.00 0.00 0.00 3.96
98 99 0.970640 TGTTCCGGCTAGTAACTGCA 59.029 50.000 0.00 0.00 0.00 4.41
99 100 2.088950 TTGTTCCGGCTAGTAACTGC 57.911 50.000 0.00 0.00 0.00 4.40
100 101 5.180492 TCATTTTTGTTCCGGCTAGTAACTG 59.820 40.000 0.00 0.00 0.00 3.16
101 102 5.310451 TCATTTTTGTTCCGGCTAGTAACT 58.690 37.500 0.00 0.00 0.00 2.24
102 103 5.391629 CCTCATTTTTGTTCCGGCTAGTAAC 60.392 44.000 0.00 0.00 0.00 2.50
103 104 4.698304 CCTCATTTTTGTTCCGGCTAGTAA 59.302 41.667 0.00 0.00 0.00 2.24
104 105 4.258543 CCTCATTTTTGTTCCGGCTAGTA 58.741 43.478 0.00 0.00 0.00 1.82
105 106 3.081804 CCTCATTTTTGTTCCGGCTAGT 58.918 45.455 0.00 0.00 0.00 2.57
106 107 2.159379 GCCTCATTTTTGTTCCGGCTAG 60.159 50.000 0.00 0.00 33.47 3.42
107 108 1.816224 GCCTCATTTTTGTTCCGGCTA 59.184 47.619 0.00 0.00 33.47 3.93
108 109 0.603065 GCCTCATTTTTGTTCCGGCT 59.397 50.000 0.00 0.00 33.47 5.52
109 110 0.316841 TGCCTCATTTTTGTTCCGGC 59.683 50.000 0.00 0.00 36.64 6.13
110 111 1.067635 CCTGCCTCATTTTTGTTCCGG 60.068 52.381 0.00 0.00 0.00 5.14
111 112 1.885887 TCCTGCCTCATTTTTGTTCCG 59.114 47.619 0.00 0.00 0.00 4.30
112 113 2.893489 AGTCCTGCCTCATTTTTGTTCC 59.107 45.455 0.00 0.00 0.00 3.62
113 114 3.569701 TGAGTCCTGCCTCATTTTTGTTC 59.430 43.478 0.00 0.00 36.57 3.18
114 115 3.565307 TGAGTCCTGCCTCATTTTTGTT 58.435 40.909 0.00 0.00 36.57 2.83
115 116 3.228188 TGAGTCCTGCCTCATTTTTGT 57.772 42.857 0.00 0.00 36.57 2.83
122 123 1.899814 ACGTTTATGAGTCCTGCCTCA 59.100 47.619 0.00 0.00 45.06 3.86
123 124 2.673368 CAACGTTTATGAGTCCTGCCTC 59.327 50.000 0.00 0.00 0.00 4.70
124 125 2.615493 CCAACGTTTATGAGTCCTGCCT 60.615 50.000 0.00 0.00 0.00 4.75
125 126 1.737793 CCAACGTTTATGAGTCCTGCC 59.262 52.381 0.00 0.00 0.00 4.85
126 127 1.130561 GCCAACGTTTATGAGTCCTGC 59.869 52.381 0.00 0.00 0.00 4.85
127 128 2.673368 GAGCCAACGTTTATGAGTCCTG 59.327 50.000 0.00 0.00 0.00 3.86
128 129 2.301870 TGAGCCAACGTTTATGAGTCCT 59.698 45.455 0.00 0.00 0.00 3.85
129 130 2.695359 TGAGCCAACGTTTATGAGTCC 58.305 47.619 0.00 0.00 0.00 3.85
130 131 4.066710 GTTGAGCCAACGTTTATGAGTC 57.933 45.455 0.00 0.00 34.63 3.36
179 180 4.568072 ACTAGCAACATTGGTACCATCA 57.432 40.909 17.17 1.12 39.88 3.07
180 181 4.506654 CGTACTAGCAACATTGGTACCATC 59.493 45.833 17.17 1.32 39.88 3.51
181 182 4.439057 CGTACTAGCAACATTGGTACCAT 58.561 43.478 17.17 0.61 39.88 3.55
182 183 3.368635 CCGTACTAGCAACATTGGTACCA 60.369 47.826 11.60 11.60 39.88 3.25
183 184 3.192466 CCGTACTAGCAACATTGGTACC 58.808 50.000 4.43 4.43 39.88 3.34
184 185 2.606272 GCCGTACTAGCAACATTGGTAC 59.394 50.000 0.00 0.75 39.88 3.34
185 186 2.498481 AGCCGTACTAGCAACATTGGTA 59.502 45.455 7.41 3.68 39.88 3.25
186 187 1.278127 AGCCGTACTAGCAACATTGGT 59.722 47.619 7.41 1.47 42.29 3.67
187 188 1.665679 CAGCCGTACTAGCAACATTGG 59.334 52.381 7.41 0.00 0.00 3.16
188 189 2.604914 CTCAGCCGTACTAGCAACATTG 59.395 50.000 7.41 0.00 0.00 2.82
189 190 2.418746 CCTCAGCCGTACTAGCAACATT 60.419 50.000 7.41 0.00 0.00 2.71
190 191 1.137086 CCTCAGCCGTACTAGCAACAT 59.863 52.381 7.41 0.00 0.00 2.71
191 192 0.530744 CCTCAGCCGTACTAGCAACA 59.469 55.000 7.41 0.00 0.00 3.33
192 193 0.531200 ACCTCAGCCGTACTAGCAAC 59.469 55.000 7.41 0.00 0.00 4.17
193 194 0.530744 CACCTCAGCCGTACTAGCAA 59.469 55.000 7.41 0.00 0.00 3.91
194 195 1.320344 CCACCTCAGCCGTACTAGCA 61.320 60.000 7.41 0.00 0.00 3.49
195 196 1.437986 CCACCTCAGCCGTACTAGC 59.562 63.158 0.00 0.00 0.00 3.42
196 197 1.320344 TGCCACCTCAGCCGTACTAG 61.320 60.000 0.00 0.00 0.00 2.57
197 198 1.304630 TGCCACCTCAGCCGTACTA 60.305 57.895 0.00 0.00 0.00 1.82
198 199 2.603473 TGCCACCTCAGCCGTACT 60.603 61.111 0.00 0.00 0.00 2.73
199 200 2.434359 GTGCCACCTCAGCCGTAC 60.434 66.667 0.00 0.00 0.00 3.67
200 201 3.702048 GGTGCCACCTCAGCCGTA 61.702 66.667 6.63 0.00 34.73 4.02
203 204 4.729918 CCTGGTGCCACCTCAGCC 62.730 72.222 16.23 0.00 39.58 4.85
204 205 3.958860 ACCTGGTGCCACCTCAGC 61.959 66.667 16.23 0.00 39.58 4.26
205 206 2.033141 CACCTGGTGCCACCTCAG 59.967 66.667 16.23 4.75 39.58 3.35
206 207 1.640593 TTTCACCTGGTGCCACCTCA 61.641 55.000 22.02 0.00 39.58 3.86
207 208 0.251341 ATTTCACCTGGTGCCACCTC 60.251 55.000 22.02 0.00 39.58 3.85
208 209 0.188342 AATTTCACCTGGTGCCACCT 59.812 50.000 22.02 2.44 39.58 4.00
209 210 0.603065 GAATTTCACCTGGTGCCACC 59.397 55.000 22.02 7.01 39.22 4.61
210 211 1.270550 CAGAATTTCACCTGGTGCCAC 59.729 52.381 22.02 10.72 32.98 5.01
211 212 1.619654 CAGAATTTCACCTGGTGCCA 58.380 50.000 22.02 10.86 32.98 4.92
212 213 0.890683 CCAGAATTTCACCTGGTGCC 59.109 55.000 22.02 8.15 43.71 5.01
218 219 0.036732 TGAGCGCCAGAATTTCACCT 59.963 50.000 2.29 0.00 0.00 4.00
223 224 3.084039 TCTTCAATGAGCGCCAGAATTT 58.916 40.909 2.29 0.00 0.00 1.82
236 237 1.409381 GGCTCCCCCTTCTCTTCAATG 60.409 57.143 0.00 0.00 0.00 2.82
244 245 0.837940 GATAAACGGCTCCCCCTTCT 59.162 55.000 0.00 0.00 0.00 2.85
256 257 8.107564 CACAACAAGAAAAACCAAAGATAAACG 58.892 33.333 0.00 0.00 0.00 3.60
261 262 5.733676 AGCACAACAAGAAAAACCAAAGAT 58.266 33.333 0.00 0.00 0.00 2.40
290 291 3.174788 GCCCTTGACTTTACGGCG 58.825 61.111 4.80 4.80 0.00 6.46
293 294 1.743995 CCCCGCCCTTGACTTTACG 60.744 63.158 0.00 0.00 0.00 3.18
306 307 1.535028 CAAAAGAAAAATTGCCCCCGC 59.465 47.619 0.00 0.00 0.00 6.13
345 346 0.891904 GGCTCCTTAAAACCCGCACA 60.892 55.000 0.00 0.00 0.00 4.57
346 347 1.880894 GGCTCCTTAAAACCCGCAC 59.119 57.895 0.00 0.00 0.00 5.34
347 348 1.673009 CGGCTCCTTAAAACCCGCA 60.673 57.895 0.00 0.00 31.87 5.69
348 349 1.239296 AACGGCTCCTTAAAACCCGC 61.239 55.000 0.00 0.00 42.49 6.13
350 351 2.624364 TCAAAACGGCTCCTTAAAACCC 59.376 45.455 0.00 0.00 0.00 4.11
359 360 3.643159 AAAACTGATCAAAACGGCTCC 57.357 42.857 0.00 0.00 0.00 4.70
411 423 7.953493 ACTCCACTTTTTATAATGGAAAAGGGA 59.047 33.333 11.26 12.44 44.91 4.20
414 426 9.981114 AACACTCCACTTTTTATAATGGAAAAG 57.019 29.630 6.91 6.45 44.44 2.27
443 455 1.795286 CAAGCCTTGTCGAGTGTCTTC 59.205 52.381 0.00 0.00 0.00 2.87
484 496 5.741011 TGAACAGATAAAATAGTTCCGCCT 58.259 37.500 0.00 0.00 39.57 5.52
517 529 5.761234 ACTTGAAAGTGCACTCGGTAATTAA 59.239 36.000 21.95 0.00 37.98 1.40
552 567 7.152645 CACCTTATTGTGCCGATAACTATACT 58.847 38.462 0.00 0.00 0.00 2.12
574 589 1.632422 GCATGTACTTGCATTGCACC 58.368 50.000 24.45 0.50 42.31 5.01
596 618 7.102993 TCATCTTCACTTTATTGATTCGGACA 58.897 34.615 0.00 0.00 0.00 4.02
669 693 0.028374 GTGGCTTTGCGTGTTACGTT 59.972 50.000 0.00 0.00 44.73 3.99
860 909 4.713321 AGGTTAAAGGGAATGCTACGTAGA 59.287 41.667 26.53 11.54 0.00 2.59
861 910 5.019785 AGGTTAAAGGGAATGCTACGTAG 57.980 43.478 18.47 18.47 0.00 3.51
862 911 5.425196 AAGGTTAAAGGGAATGCTACGTA 57.575 39.130 0.00 0.00 0.00 3.57
863 912 3.994931 AGGTTAAAGGGAATGCTACGT 57.005 42.857 0.00 0.00 0.00 3.57
864 913 5.638596 AAAAGGTTAAAGGGAATGCTACG 57.361 39.130 0.00 0.00 0.00 3.51
880 929 5.159273 TGTCAAAGCCAAAAGAAAAAGGT 57.841 34.783 0.00 0.00 0.00 3.50
1001 1050 5.067283 GTGTGTTTTACCACTCCAATCACTT 59.933 40.000 0.00 0.00 36.30 3.16
1035 1084 7.808856 CAGATATCAGACATATCTCTGTGTGTG 59.191 40.741 5.32 0.00 40.33 3.82
1036 1085 7.039853 CCAGATATCAGACATATCTCTGTGTGT 60.040 40.741 5.32 0.00 40.33 3.72
1037 1086 7.176340 TCCAGATATCAGACATATCTCTGTGTG 59.824 40.741 5.32 0.00 38.80 3.82
1038 1087 7.237255 TCCAGATATCAGACATATCTCTGTGT 58.763 38.462 5.32 2.08 38.80 3.72
1039 1088 7.629008 GCTCCAGATATCAGACATATCTCTGTG 60.629 44.444 5.32 0.00 38.80 3.66
1040 1089 6.377996 GCTCCAGATATCAGACATATCTCTGT 59.622 42.308 5.32 0.00 38.80 3.41
1072 1128 1.823899 GCCAATCGTCCCACCATCC 60.824 63.158 0.00 0.00 0.00 3.51
1236 1292 1.371558 GTTGAAGAGGGTGGCGAGT 59.628 57.895 0.00 0.00 0.00 4.18
1323 1423 1.549620 CCGAGATGGATGAGGAGGATG 59.450 57.143 0.00 0.00 42.00 3.51
1455 1555 1.078848 GTCACTGGAGCTTCGCCAT 60.079 57.895 0.00 0.00 31.99 4.40
1494 1594 0.797542 CGACGACGAAGAGAAGGACT 59.202 55.000 0.00 0.00 42.66 3.85
1515 1615 1.515952 CTCGCTGAAGCTGAGGACG 60.516 63.158 13.08 0.00 37.73 4.79
1617 1807 2.361104 GGCATCCCGGTGAAGCAA 60.361 61.111 17.80 0.00 39.44 3.91
1773 4769 1.668751 GCTTTGTTTCGTGACACCAGA 59.331 47.619 0.00 0.00 0.00 3.86
2350 5364 2.613977 CCTTACTGAGAGCCCAGTTGTG 60.614 54.545 8.93 1.99 44.32 3.33
2413 5427 2.510190 CTTCGGTCGAACGAGACGCT 62.510 60.000 26.17 0.00 44.47 5.07
2430 5444 1.656587 TGTGCCATAGGAGGACACTT 58.343 50.000 0.00 0.00 36.94 3.16
2490 5504 3.924114 TTACCACCATCATCGACCAAT 57.076 42.857 0.00 0.00 0.00 3.16
2514 5528 1.290732 CCTCCTCCTCCTTCTCCTTCT 59.709 57.143 0.00 0.00 0.00 2.85
2550 5564 2.094494 TGCTTCTGCTTCTAGTCCTTCG 60.094 50.000 0.00 0.00 40.48 3.79
2557 5658 1.008329 GCTGCTGCTTCTGCTTCTAG 58.992 55.000 8.53 0.00 40.48 2.43
2558 5659 0.322648 TGCTGCTGCTTCTGCTTCTA 59.677 50.000 17.00 0.00 40.48 2.10
2561 5662 2.627737 GCTGCTGCTGCTTCTGCTT 61.628 57.895 22.10 0.00 40.48 3.91
2592 5699 7.256154 CCTCCTTCTTCTTCTTGTTCTTCTACT 60.256 40.741 0.00 0.00 0.00 2.57
2602 5709 3.197549 CCTCCTCCTCCTTCTTCTTCTTG 59.802 52.174 0.00 0.00 0.00 3.02
2609 5716 1.290732 CTCCTCCTCCTCCTCCTTCTT 59.709 57.143 0.00 0.00 0.00 2.52
2611 5718 0.105709 CCTCCTCCTCCTCCTCCTTC 60.106 65.000 0.00 0.00 0.00 3.46
2612 5719 0.556380 TCCTCCTCCTCCTCCTCCTT 60.556 60.000 0.00 0.00 0.00 3.36
2613 5720 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
2614 5721 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
2615 5722 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
2616 5723 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
2617 5724 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
2618 5725 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
2619 5726 2.710826 GCCTCCTCCTCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
2620 5727 2.123033 GCCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
2621 5728 1.457455 CTGCCTCCTCCTCCTCCTC 60.457 68.421 0.00 0.00 0.00 3.71
2622 5729 1.938596 TCTGCCTCCTCCTCCTCCT 60.939 63.158 0.00 0.00 0.00 3.69
2623 5730 1.457455 CTCTGCCTCCTCCTCCTCC 60.457 68.421 0.00 0.00 0.00 4.30
2624 5731 1.457455 CCTCTGCCTCCTCCTCCTC 60.457 68.421 0.00 0.00 0.00 3.71
2625 5732 2.695597 CCTCTGCCTCCTCCTCCT 59.304 66.667 0.00 0.00 0.00 3.69
2626 5733 2.445654 CCCTCTGCCTCCTCCTCC 60.446 72.222 0.00 0.00 0.00 4.30
2627 5734 2.445654 CCCCTCTGCCTCCTCCTC 60.446 72.222 0.00 0.00 0.00 3.71
2628 5735 2.125066 TTTCCCCTCTGCCTCCTCCT 62.125 60.000 0.00 0.00 0.00 3.69
2629 5736 0.990818 ATTTCCCCTCTGCCTCCTCC 60.991 60.000 0.00 0.00 0.00 4.30
2630 5737 1.696884 CTATTTCCCCTCTGCCTCCTC 59.303 57.143 0.00 0.00 0.00 3.71
2631 5738 1.295292 TCTATTTCCCCTCTGCCTCCT 59.705 52.381 0.00 0.00 0.00 3.69
2632 5739 1.807814 TCTATTTCCCCTCTGCCTCC 58.192 55.000 0.00 0.00 0.00 4.30
2633 5740 2.505819 TGTTCTATTTCCCCTCTGCCTC 59.494 50.000 0.00 0.00 0.00 4.70
2634 5741 2.562296 TGTTCTATTTCCCCTCTGCCT 58.438 47.619 0.00 0.00 0.00 4.75
2635 5742 3.054361 TCTTGTTCTATTTCCCCTCTGCC 60.054 47.826 0.00 0.00 0.00 4.85
2636 5743 4.222124 TCTTGTTCTATTTCCCCTCTGC 57.778 45.455 0.00 0.00 0.00 4.26
2637 5744 6.054860 TCTTCTTGTTCTATTTCCCCTCTG 57.945 41.667 0.00 0.00 0.00 3.35
2638 5745 6.502158 TCTTCTTCTTGTTCTATTTCCCCTCT 59.498 38.462 0.00 0.00 0.00 3.69
2639 5746 6.712276 TCTTCTTCTTGTTCTATTTCCCCTC 58.288 40.000 0.00 0.00 0.00 4.30
2640 5747 6.704056 TCTTCTTCTTGTTCTATTTCCCCT 57.296 37.500 0.00 0.00 0.00 4.79
2641 5748 7.168905 TCTTCTTCTTCTTGTTCTATTTCCCC 58.831 38.462 0.00 0.00 0.00 4.81
2642 5749 8.622948 TTCTTCTTCTTCTTGTTCTATTTCCC 57.377 34.615 0.00 0.00 0.00 3.97
2643 5750 9.495572 TCTTCTTCTTCTTCTTGTTCTATTTCC 57.504 33.333 0.00 0.00 0.00 3.13
2646 5753 8.983724 CGTTCTTCTTCTTCTTCTTGTTCTATT 58.016 33.333 0.00 0.00 0.00 1.73
2647 5754 7.600752 CCGTTCTTCTTCTTCTTCTTGTTCTAT 59.399 37.037 0.00 0.00 0.00 1.98
2648 5755 6.924060 CCGTTCTTCTTCTTCTTCTTGTTCTA 59.076 38.462 0.00 0.00 0.00 2.10
2649 5756 5.755861 CCGTTCTTCTTCTTCTTCTTGTTCT 59.244 40.000 0.00 0.00 0.00 3.01
2650 5757 5.753921 TCCGTTCTTCTTCTTCTTCTTGTTC 59.246 40.000 0.00 0.00 0.00 3.18
2651 5758 5.671493 TCCGTTCTTCTTCTTCTTCTTGTT 58.329 37.500 0.00 0.00 0.00 2.83
2652 5759 5.277857 TCCGTTCTTCTTCTTCTTCTTGT 57.722 39.130 0.00 0.00 0.00 3.16
2653 5760 5.986135 TCTTCCGTTCTTCTTCTTCTTCTTG 59.014 40.000 0.00 0.00 0.00 3.02
2817 5972 4.911390 TCTTGGACAAAGAGGAGGATTTC 58.089 43.478 0.00 0.00 40.09 2.17
3227 6400 3.254014 AATCAACGGCAGCACACGC 62.254 57.895 0.00 0.00 38.99 5.34
3232 6405 1.202114 GGAAATCAATCAACGGCAGCA 59.798 47.619 0.00 0.00 0.00 4.41
3237 6410 3.855689 AGCAAGGAAATCAATCAACGG 57.144 42.857 0.00 0.00 0.00 4.44
3304 6477 1.410153 ACAAAACAGAAGCAAGGGCAG 59.590 47.619 0.00 0.00 44.61 4.85
3346 6526 1.069258 GGTCAGGTAGCCGCATACC 59.931 63.158 9.72 9.72 44.81 2.73
3348 6528 2.495409 CCGGTCAGGTAGCCGCATA 61.495 63.158 0.00 0.00 45.98 3.14
3349 6529 3.849951 CCGGTCAGGTAGCCGCAT 61.850 66.667 0.00 0.00 45.98 4.73
3352 6532 3.771160 AAGCCGGTCAGGTAGCCG 61.771 66.667 1.90 0.00 46.80 5.52
3353 6533 2.125106 CAAGCCGGTCAGGTAGCC 60.125 66.667 1.90 0.00 43.70 3.93
3354 6534 0.605589 AAACAAGCCGGTCAGGTAGC 60.606 55.000 1.90 0.00 43.70 3.58
3355 6535 2.754946 TAAACAAGCCGGTCAGGTAG 57.245 50.000 1.90 0.00 43.70 3.18
3356 6536 3.706600 ATTAAACAAGCCGGTCAGGTA 57.293 42.857 1.90 0.00 43.70 3.08
3357 6537 2.579410 ATTAAACAAGCCGGTCAGGT 57.421 45.000 1.90 0.00 43.70 4.00
3358 6538 3.005367 ACAAATTAAACAAGCCGGTCAGG 59.995 43.478 1.90 0.00 44.97 3.86
3359 6539 4.237349 ACAAATTAAACAAGCCGGTCAG 57.763 40.909 1.90 0.00 0.00 3.51
3360 6540 4.142138 ACAACAAATTAAACAAGCCGGTCA 60.142 37.500 1.90 0.00 0.00 4.02
3361 6541 4.364860 ACAACAAATTAAACAAGCCGGTC 58.635 39.130 1.90 0.00 0.00 4.79
3362 6542 4.364860 GACAACAAATTAAACAAGCCGGT 58.635 39.130 1.90 0.00 0.00 5.28
3363 6543 3.423867 CGACAACAAATTAAACAAGCCGG 59.576 43.478 0.00 0.00 0.00 6.13
3364 6544 4.039032 ACGACAACAAATTAAACAAGCCG 58.961 39.130 0.00 0.00 0.00 5.52
3365 6545 5.114423 CGTACGACAACAAATTAAACAAGCC 59.886 40.000 10.44 0.00 0.00 4.35
3366 6546 5.678047 ACGTACGACAACAAATTAAACAAGC 59.322 36.000 24.41 0.00 0.00 4.01
3367 6547 6.683708 ACACGTACGACAACAAATTAAACAAG 59.316 34.615 24.41 0.00 0.00 3.16
3368 6548 6.465149 CACACGTACGACAACAAATTAAACAA 59.535 34.615 24.41 0.00 0.00 2.83
3396 6578 2.168728 GCCGGAGAAGTCTATCTTTGGT 59.831 50.000 5.05 0.00 36.40 3.67
3415 6597 1.767759 AAGGCACATCCATTGTAGCC 58.232 50.000 0.00 0.00 45.34 3.93
3418 6600 8.995027 AAGAATATTAAGGCACATCCATTGTA 57.005 30.769 0.00 0.00 36.57 2.41
3419 6601 7.781693 AGAAGAATATTAAGGCACATCCATTGT 59.218 33.333 0.00 0.00 39.91 2.71
3441 6680 7.438160 TGATAGTCGGCACAATTATTACAGAAG 59.562 37.037 0.00 0.00 0.00 2.85
3531 6776 2.207788 ATAACCCTTTGCAACGCGCC 62.208 55.000 5.73 0.00 41.33 6.53
3533 6778 2.904011 TTATAACCCTTTGCAACGCG 57.096 45.000 3.53 3.53 0.00 6.01
3555 6800 8.546083 TTGGCAGGTAAATAATGTAATGGAAT 57.454 30.769 0.00 0.00 0.00 3.01
3763 7958 8.087982 TGAAGCCATATTAGTCGAATTTCATC 57.912 34.615 0.00 0.00 0.00 2.92
3801 7996 8.958119 TTACTTTGTAATTGCCACCTAGATAG 57.042 34.615 0.00 0.00 0.00 2.08
3805 8000 6.093633 GGACTTACTTTGTAATTGCCACCTAG 59.906 42.308 0.00 0.00 0.00 3.02
3981 8182 5.411669 ACCTTTGATTTGTACTCGGCTTAAG 59.588 40.000 0.00 0.00 0.00 1.85
4011 8212 2.036475 AGATCATCGATCACCCTTTCCG 59.964 50.000 0.00 0.00 41.12 4.30
4022 8223 4.984785 CGATAACACACCAAGATCATCGAT 59.015 41.667 0.00 0.00 36.94 3.59
4026 8227 4.191544 CCACGATAACACACCAAGATCAT 58.808 43.478 0.00 0.00 0.00 2.45
4065 8266 2.588989 CCAGAGAAGAGGGCTGGC 59.411 66.667 0.00 0.00 42.30 4.85
4111 8312 4.988598 CAGAGCCGCACCCGTGTT 62.989 66.667 0.00 0.00 0.00 3.32
4127 8329 4.116961 CCGTAGTGTCAAGTTTTCACTCA 58.883 43.478 11.47 0.35 41.66 3.41
4218 8420 2.018542 TTTCAATCGGAACCCTAGCG 57.981 50.000 0.00 0.00 34.56 4.26
4257 8463 0.466543 AAGTGTGTAACCACCGAGCA 59.533 50.000 0.00 0.00 41.09 4.26
4271 8477 3.637273 GACTCCGCCCCCAAGTGT 61.637 66.667 0.00 0.00 0.00 3.55
4366 8580 1.004440 GACCACCTCACACCAGAGC 60.004 63.158 0.00 0.00 34.26 4.09
4421 8635 1.000283 GAGATCATGGCGACCGAGAAT 60.000 52.381 0.00 0.00 0.00 2.40
4427 8641 1.070445 CCAGGAGATCATGGCGACC 59.930 63.158 0.00 0.00 41.16 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.