Multiple sequence alignment - TraesCS3A01G019200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G019200 chr3A 100.000 5999 0 0 1 5999 11757247 11763245 0.000000e+00 11079.0
1 TraesCS3A01G019200 chr3A 85.196 1709 192 30 3664 5314 722279593 722281298 0.000000e+00 1698.0
2 TraesCS3A01G019200 chr3A 83.180 654 78 22 975 1608 722275220 722275861 2.430000e-158 569.0
3 TraesCS3A01G019200 chr3A 82.923 568 76 13 3047 3606 722279042 722279596 5.400000e-135 492.0
4 TraesCS3A01G019200 chr3A 87.234 141 14 3 218 356 11757410 11757548 2.240000e-34 158.0
5 TraesCS3A01G019200 chr3A 87.234 141 14 3 164 302 11757464 11757602 2.240000e-34 158.0
6 TraesCS3A01G019200 chr3A 87.387 111 11 2 234 344 11757287 11757394 2.270000e-24 124.0
7 TraesCS3A01G019200 chr3A 87.387 111 11 2 41 148 11757480 11757590 2.270000e-24 124.0
8 TraesCS3A01G019200 chr3A 100.000 28 0 0 5319 5346 11762535 11762562 1.100000e-02 52.8
9 TraesCS3A01G019200 chr3A 100.000 28 0 0 5289 5316 11762565 11762592 1.100000e-02 52.8
10 TraesCS3A01G019200 chr3B 92.423 3207 162 29 2128 5316 28317966 28314823 0.000000e+00 4501.0
11 TraesCS3A01G019200 chr3B 84.597 1714 186 43 3671 5314 792861977 792863682 0.000000e+00 1631.0
12 TraesCS3A01G019200 chr3B 92.798 972 51 7 4362 5316 13506747 13505778 0.000000e+00 1389.0
13 TraesCS3A01G019200 chr3B 91.667 684 52 4 5319 5999 28314850 28314169 0.000000e+00 942.0
14 TraesCS3A01G019200 chr3B 95.406 566 21 3 3808 4369 13508687 13508123 0.000000e+00 896.0
15 TraesCS3A01G019200 chr3B 89.056 731 42 16 909 1614 28318999 28318282 0.000000e+00 872.0
16 TraesCS3A01G019200 chr3B 86.014 572 42 22 888 1444 13509762 13509214 4.030000e-161 579.0
17 TraesCS3A01G019200 chr3B 82.580 597 75 18 1020 1606 792858156 792858733 3.230000e-137 499.0
18 TraesCS3A01G019200 chr3B 88.946 389 39 3 5614 5999 13504563 13504176 1.510000e-130 477.0
19 TraesCS3A01G019200 chr3B 81.345 595 80 20 3035 3605 792861388 792861975 7.090000e-124 455.0
20 TraesCS3A01G019200 chr3B 90.852 317 19 4 5319 5633 13505805 13505497 3.340000e-112 416.0
21 TraesCS3A01G019200 chr3B 88.820 322 26 5 324 644 28328009 28327697 2.620000e-103 387.0
22 TraesCS3A01G019200 chr3B 91.237 194 7 6 677 870 28319180 28318997 7.720000e-64 255.0
23 TraesCS3A01G019200 chr3B 77.253 466 34 29 1495 1927 13509209 13508783 2.190000e-49 207.0
24 TraesCS3A01G019200 chr3B 93.750 128 4 1 687 814 13526560 13526437 7.940000e-44 189.0
25 TraesCS3A01G019200 chr3B 91.406 128 7 1 687 814 13554841 13554718 7.990000e-39 172.0
26 TraesCS3A01G019200 chr3B 96.721 61 0 1 607 667 13527019 13526961 3.830000e-17 100.0
27 TraesCS3A01G019200 chr3B 96.721 61 0 1 607 667 13555299 13555241 3.830000e-17 100.0
28 TraesCS3A01G019200 chr3D 90.264 2424 200 22 2903 5315 5232167 5234565 0.000000e+00 3136.0
29 TraesCS3A01G019200 chr3D 92.505 1641 114 8 3681 5316 9418002 9416366 0.000000e+00 2340.0
30 TraesCS3A01G019200 chr3D 85.382 1676 196 29 3680 5314 591822392 591820725 0.000000e+00 1692.0
31 TraesCS3A01G019200 chr3D 86.806 955 62 34 670 1604 5230508 5231418 0.000000e+00 1007.0
32 TraesCS3A01G019200 chr3D 85.847 968 57 31 691 1614 9420464 9419533 0.000000e+00 955.0
33 TraesCS3A01G019200 chr3D 92.985 613 38 3 2995 3606 9418767 9418159 0.000000e+00 889.0
34 TraesCS3A01G019200 chr3D 86.023 694 77 14 5319 5999 9416393 9415707 0.000000e+00 726.0
35 TraesCS3A01G019200 chr3D 90.559 519 22 8 164 681 5229625 5230117 0.000000e+00 662.0
36 TraesCS3A01G019200 chr3D 86.632 576 50 15 884 1441 5221887 5222453 3.970000e-171 612.0
37 TraesCS3A01G019200 chr3D 83.495 618 74 17 1012 1614 591827214 591826610 8.790000e-153 551.0
38 TraesCS3A01G019200 chr3D 82.771 563 80 14 3047 3605 591822960 591822411 2.510000e-133 486.0
39 TraesCS3A01G019200 chr3D 98.649 148 2 0 1 148 5229547 5229694 4.610000e-66 263.0
40 TraesCS3A01G019200 chr3D 91.367 139 10 2 164 302 5229678 5229814 7.940000e-44 189.0
41 TraesCS3A01G019200 chr3D 83.422 187 16 3 2663 2840 5231987 5232167 6.220000e-35 159.0
42 TraesCS3A01G019200 chr3D 92.661 109 7 1 41 148 5229694 5229802 8.050000e-34 156.0
43 TraesCS3A01G019200 chr3D 89.431 123 10 2 234 356 5229587 5229706 1.040000e-32 152.0
44 TraesCS3A01G019200 chr3D 92.771 83 6 0 164 246 5229732 5229814 2.940000e-23 121.0
45 TraesCS3A01G019200 chr3D 100.000 29 0 0 164 192 5229786 5229814 3.000000e-03 54.7
46 TraesCS3A01G019200 chrUn 91.048 1642 130 10 3683 5315 36512177 36513810 0.000000e+00 2202.0
47 TraesCS3A01G019200 chrUn 87.513 985 58 32 649 1614 36507885 36508823 0.000000e+00 1077.0
48 TraesCS3A01G019200 chrUn 89.903 723 67 4 2903 3623 36511439 36512157 0.000000e+00 926.0
49 TraesCS3A01G019200 chrUn 84.355 620 77 11 5383 5997 35697398 35698002 1.860000e-164 590.0
50 TraesCS3A01G019200 chrUn 87.798 377 42 1 5321 5693 36513786 36514162 7.140000e-119 438.0
51 TraesCS3A01G019200 chrUn 87.072 263 27 4 2155 2413 36509289 36509548 2.120000e-74 291.0
52 TraesCS3A01G019200 chrUn 100.000 43 0 0 1882 1924 36509222 36509264 4.980000e-11 80.5
53 TraesCS3A01G019200 chr7A 94.860 214 3 4 1925 2130 91513632 91513419 1.610000e-85 327.0
54 TraesCS3A01G019200 chr7A 79.457 258 53 0 3124 3381 572184710 572184453 3.690000e-42 183.0
55 TraesCS3A01G019200 chr2A 94.811 212 3 4 1925 2128 434574896 434574685 2.090000e-84 324.0
56 TraesCS3A01G019200 chr2A 94.762 210 4 3 1925 2127 535728260 535728469 2.700000e-83 320.0
57 TraesCS3A01G019200 chr2A 92.760 221 6 6 1925 2135 2855338 2855118 1.620000e-80 311.0
58 TraesCS3A01G019200 chr2A 93.365 211 6 5 1925 2127 777753267 777753477 7.550000e-79 305.0
59 TraesCS3A01G019200 chr6A 94.340 212 4 5 1925 2128 20905965 20905754 9.700000e-83 318.0
60 TraesCS3A01G019200 chr6A 93.839 211 6 3 1925 2128 571828176 571827966 1.620000e-80 311.0
61 TraesCS3A01G019200 chr5A 94.231 208 5 6 1927 2127 667477474 667477681 1.620000e-80 311.0
62 TraesCS3A01G019200 chr5A 85.714 63 8 1 1661 1722 439883990 439884052 1.400000e-06 65.8
63 TraesCS3A01G019200 chr4A 93.056 216 7 6 1922 2129 620449010 620449225 5.840000e-80 309.0
64 TraesCS3A01G019200 chr7B 80.620 258 50 0 3124 3381 532483874 532483617 3.670000e-47 200.0
65 TraesCS3A01G019200 chr7B 75.897 195 32 10 2496 2688 107821150 107820969 1.070000e-12 86.1
66 TraesCS3A01G019200 chr7B 87.302 63 8 0 1308 1370 532484539 532484477 8.340000e-09 73.1
67 TraesCS3A01G019200 chr7D 75.773 194 33 9 2496 2688 143976660 143976840 1.070000e-12 86.1
68 TraesCS3A01G019200 chr7D 87.302 63 8 0 1308 1370 504524130 504524068 8.340000e-09 73.1
69 TraesCS3A01G019200 chr6B 78.169 142 21 8 1645 1784 591251697 591251830 1.390000e-11 82.4
70 TraesCS3A01G019200 chr1B 97.059 34 1 0 1673 1706 563051918 563051885 2.340000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G019200 chr3A 11757247 11763245 5998 False 11079.000000 11079 100.000000 1 5999 1 chr3A.!!$F1 5998
1 TraesCS3A01G019200 chr3A 722275220 722281298 6078 False 919.666667 1698 83.766333 975 5314 3 chr3A.!!$F4 4339
2 TraesCS3A01G019200 chr3B 28314169 28319180 5011 True 1642.500000 4501 91.095750 677 5999 4 chr3B.!!$R5 5322
3 TraesCS3A01G019200 chr3B 792858156 792863682 5526 False 861.666667 1631 82.840667 1020 5314 3 chr3B.!!$F1 4294
4 TraesCS3A01G019200 chr3B 13504176 13509762 5586 True 660.666667 1389 88.544833 888 5999 6 chr3B.!!$R2 5111
5 TraesCS3A01G019200 chr3D 9415707 9420464 4757 True 1227.500000 2340 89.340000 691 5999 4 chr3D.!!$R1 5308
6 TraesCS3A01G019200 chr3D 591820725 591827214 6489 True 909.666667 1692 83.882667 1012 5314 3 chr3D.!!$R2 4302
7 TraesCS3A01G019200 chr3D 5221887 5222453 566 False 612.000000 612 86.632000 884 1441 1 chr3D.!!$F1 557
8 TraesCS3A01G019200 chr3D 5229547 5234565 5018 False 589.970000 3136 91.593000 1 5315 10 chr3D.!!$F2 5314
9 TraesCS3A01G019200 chrUn 36507885 36514162 6277 False 835.750000 2202 90.555667 649 5693 6 chrUn.!!$F2 5044
10 TraesCS3A01G019200 chrUn 35697398 35698002 604 False 590.000000 590 84.355000 5383 5997 1 chrUn.!!$F1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 0.108138 GACTGGACCGTTGGAGGATG 60.108 60.0 0.00 0.0 34.73 3.51 F
1930 3236 0.107508 AAGTCCTGCACATGGATCCG 60.108 55.0 7.39 0.0 35.87 4.18 F
1983 3289 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.0 0.00 0.0 0.00 4.02 F
2819 7508 0.167470 CTTGATGCTGGCGTTCACAG 59.833 55.0 0.00 0.0 38.95 3.66 F
3044 8853 0.250467 ATGCTCCGTGTTTCTGCTGT 60.250 50.0 0.00 0.0 0.00 4.40 F
3650 9492 0.395311 CCAGGCCTCTGCATCATTGT 60.395 55.0 0.00 0.0 39.61 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 3263 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51 R
3387 9201 1.267121 AGAACATAGTGCACGAGGGT 58.733 50.000 15.89 9.41 0.00 4.34 R
3975 9985 1.546476 AGCTCACTCTTGACCTAACCG 59.454 52.381 0.00 0.00 0.00 4.44 R
4190 10223 2.719531 TACAACAGGTGGAGTTTGCA 57.280 45.000 0.00 0.00 0.00 4.08 R
4988 12431 2.561569 GCATGGTAGCTTATTCGGTGT 58.438 47.619 0.00 0.00 0.00 4.16 R
5618 13112 0.955428 CCGCGCATATAAGCATGGGT 60.955 55.000 8.75 0.00 40.12 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.911766 GGAGGGACTGGACCGTTGA 60.912 63.158 0.00 0.00 41.55 3.18
148 149 2.237392 GCTGGAGGATGTGAGTACCTTT 59.763 50.000 0.00 0.00 33.89 3.11
149 150 3.307762 GCTGGAGGATGTGAGTACCTTTT 60.308 47.826 0.00 0.00 33.89 2.27
150 151 4.807643 GCTGGAGGATGTGAGTACCTTTTT 60.808 45.833 0.00 0.00 33.89 1.94
172 173 3.762407 TTTTGAGAACCGAGGATGTGA 57.238 42.857 0.00 0.00 0.00 3.58
173 174 3.319137 TTTGAGAACCGAGGATGTGAG 57.681 47.619 0.00 0.00 0.00 3.51
174 175 1.924731 TGAGAACCGAGGATGTGAGT 58.075 50.000 0.00 0.00 0.00 3.41
175 176 3.081710 TGAGAACCGAGGATGTGAGTA 57.918 47.619 0.00 0.00 0.00 2.59
176 177 2.753452 TGAGAACCGAGGATGTGAGTAC 59.247 50.000 0.00 0.00 0.00 2.73
177 178 2.099427 GAGAACCGAGGATGTGAGTACC 59.901 54.545 0.00 0.00 0.00 3.34
178 179 2.100989 GAACCGAGGATGTGAGTACCT 58.899 52.381 0.00 0.00 36.68 3.08
179 180 2.233305 ACCGAGGATGTGAGTACCTT 57.767 50.000 0.00 0.00 33.89 3.50
200 201 5.653769 CCTTGAGAGGCCAAATAAAATCAGA 59.346 40.000 5.01 0.00 35.94 3.27
214 215 0.252284 ATCAGAAGGGACTGGACCGT 60.252 55.000 0.00 0.00 40.86 4.83
220 221 2.663196 GGACTGGACCGTTGGAGG 59.337 66.667 0.00 0.00 37.30 4.30
223 224 0.108138 GACTGGACCGTTGGAGGATG 60.108 60.000 0.00 0.00 34.73 3.51
234 235 3.600388 GTTGGAGGATGTGAGTACCTTG 58.400 50.000 0.00 0.00 33.89 3.61
258 259 3.638627 GAGGCCAAATAAAATCAGGAGGG 59.361 47.826 5.01 0.00 0.00 4.30
259 260 3.272020 AGGCCAAATAAAATCAGGAGGGA 59.728 43.478 5.01 0.00 0.00 4.20
260 261 3.384789 GGCCAAATAAAATCAGGAGGGAC 59.615 47.826 0.00 0.00 0.00 4.46
262 263 4.098501 GCCAAATAAAATCAGGAGGGACTG 59.901 45.833 0.00 0.00 41.55 3.51
268 269 2.759985 TCAGGAGGGACTGAACCAC 58.240 57.895 0.00 0.00 44.03 4.16
269 270 0.191064 TCAGGAGGGACTGAACCACT 59.809 55.000 0.00 0.00 44.03 4.00
270 271 0.322975 CAGGAGGGACTGAACCACTG 59.677 60.000 0.00 0.00 41.55 3.66
271 272 0.838122 AGGAGGGACTGAACCACTGG 60.838 60.000 0.00 0.00 41.55 4.00
272 273 0.836400 GGAGGGACTGAACCACTGGA 60.836 60.000 0.71 0.00 41.55 3.86
273 274 0.610687 GAGGGACTGAACCACTGGAG 59.389 60.000 0.71 0.00 41.55 3.86
274 275 0.838122 AGGGACTGAACCACTGGAGG 60.838 60.000 0.71 0.00 37.18 4.30
275 276 0.836400 GGGACTGAACCACTGGAGGA 60.836 60.000 0.71 0.00 0.00 3.71
276 277 1.280457 GGACTGAACCACTGGAGGAT 58.720 55.000 0.71 0.00 0.00 3.24
277 278 2.467880 GGACTGAACCACTGGAGGATA 58.532 52.381 0.71 0.00 0.00 2.59
278 279 3.041946 GGACTGAACCACTGGAGGATAT 58.958 50.000 0.71 0.00 0.00 1.63
279 280 3.181461 GGACTGAACCACTGGAGGATATG 60.181 52.174 0.71 0.00 0.00 1.78
280 281 3.706594 GACTGAACCACTGGAGGATATGA 59.293 47.826 0.71 0.00 0.00 2.15
281 282 3.708631 ACTGAACCACTGGAGGATATGAG 59.291 47.826 0.71 0.00 0.00 2.90
282 283 3.708631 CTGAACCACTGGAGGATATGAGT 59.291 47.826 0.71 0.00 0.00 3.41
283 284 4.878968 TGAACCACTGGAGGATATGAGTA 58.121 43.478 0.71 0.00 0.00 2.59
284 285 4.649674 TGAACCACTGGAGGATATGAGTAC 59.350 45.833 0.71 0.00 0.00 2.73
285 286 3.577919 ACCACTGGAGGATATGAGTACC 58.422 50.000 0.71 0.00 0.00 3.34
286 287 3.207777 ACCACTGGAGGATATGAGTACCT 59.792 47.826 0.71 0.00 36.68 3.08
287 288 4.227197 CCACTGGAGGATATGAGTACCTT 58.773 47.826 0.00 0.00 33.89 3.50
288 289 5.103215 ACCACTGGAGGATATGAGTACCTTA 60.103 44.000 0.71 0.00 33.89 2.69
289 290 6.019748 CCACTGGAGGATATGAGTACCTTAT 58.980 44.000 0.00 0.00 33.89 1.73
290 291 7.182760 CCACTGGAGGATATGAGTACCTTATA 58.817 42.308 0.00 0.00 33.89 0.98
291 292 7.674348 CCACTGGAGGATATGAGTACCTTATAA 59.326 40.741 0.00 0.00 33.89 0.98
292 293 8.744652 CACTGGAGGATATGAGTACCTTATAAG 58.255 40.741 5.43 5.43 33.89 1.73
293 294 8.679725 ACTGGAGGATATGAGTACCTTATAAGA 58.320 37.037 14.28 0.00 33.89 2.10
294 295 9.184523 CTGGAGGATATGAGTACCTTATAAGAG 57.815 40.741 14.28 6.72 33.89 2.85
295 296 8.116669 TGGAGGATATGAGTACCTTATAAGAGG 58.883 40.741 14.28 1.20 42.75 3.69
296 297 7.068962 GGAGGATATGAGTACCTTATAAGAGGC 59.931 44.444 14.28 3.46 40.65 4.70
297 298 6.898521 AGGATATGAGTACCTTATAAGAGGCC 59.101 42.308 14.28 0.00 40.65 5.19
298 299 6.668283 GGATATGAGTACCTTATAAGAGGCCA 59.332 42.308 14.28 5.70 40.65 5.36
299 300 7.180408 GGATATGAGTACCTTATAAGAGGCCAA 59.820 40.741 14.28 0.00 40.65 4.52
300 301 6.824958 ATGAGTACCTTATAAGAGGCCAAA 57.175 37.500 14.28 0.00 40.65 3.28
301 302 6.824958 TGAGTACCTTATAAGAGGCCAAAT 57.175 37.500 14.28 0.00 40.65 2.32
302 303 7.924358 TGAGTACCTTATAAGAGGCCAAATA 57.076 36.000 14.28 0.00 40.65 1.40
303 304 8.326765 TGAGTACCTTATAAGAGGCCAAATAA 57.673 34.615 14.28 2.30 40.65 1.40
304 305 8.774183 TGAGTACCTTATAAGAGGCCAAATAAA 58.226 33.333 14.28 0.00 40.65 1.40
305 306 9.623000 GAGTACCTTATAAGAGGCCAAATAAAA 57.377 33.333 14.28 0.00 40.65 1.52
314 315 6.136541 AGAGGCCAAATAAAATTAGAAGCG 57.863 37.500 5.01 0.00 0.00 4.68
334 335 3.746949 CTGGACCGCTGGAGGATGC 62.747 68.421 1.50 0.00 34.73 3.91
360 361 0.172803 CTTGAGAGGCCAAATGCAGC 59.827 55.000 5.01 0.00 43.89 5.25
366 367 2.042831 GGCCAAATGCAGCGAGACT 61.043 57.895 0.00 0.00 43.89 3.24
374 375 2.433838 CAGCGAGACTGGTGGCTG 60.434 66.667 0.00 0.00 45.74 4.85
390 391 1.539280 GGCTGGCGGTAAGATTCTCTC 60.539 57.143 0.00 0.00 0.00 3.20
446 448 2.110006 GCCATCCCGCTCTCTTCC 59.890 66.667 0.00 0.00 0.00 3.46
470 472 4.459089 GCCACCCTGCGTCTCCTC 62.459 72.222 0.00 0.00 0.00 3.71
471 473 4.135153 CCACCCTGCGTCTCCTCG 62.135 72.222 0.00 0.00 0.00 4.63
472 474 3.374402 CACCCTGCGTCTCCTCGT 61.374 66.667 0.00 0.00 0.00 4.18
473 475 3.374402 ACCCTGCGTCTCCTCGTG 61.374 66.667 0.00 0.00 0.00 4.35
474 476 4.135153 CCCTGCGTCTCCTCGTGG 62.135 72.222 0.00 0.00 0.00 4.94
475 477 3.374402 CCTGCGTCTCCTCGTGGT 61.374 66.667 2.99 0.00 34.23 4.16
476 478 2.179517 CTGCGTCTCCTCGTGGTC 59.820 66.667 2.99 0.00 34.23 4.02
477 479 2.596338 TGCGTCTCCTCGTGGTCA 60.596 61.111 2.99 0.00 34.23 4.02
478 480 2.126424 GCGTCTCCTCGTGGTCAC 60.126 66.667 2.99 0.91 34.23 3.67
479 481 2.567049 CGTCTCCTCGTGGTCACC 59.433 66.667 2.99 0.00 34.23 4.02
480 482 1.972223 CGTCTCCTCGTGGTCACCT 60.972 63.158 2.99 0.00 34.23 4.00
481 483 1.524863 CGTCTCCTCGTGGTCACCTT 61.525 60.000 2.99 0.00 34.23 3.50
482 484 0.244178 GTCTCCTCGTGGTCACCTTC 59.756 60.000 2.99 0.00 34.23 3.46
483 485 0.112606 TCTCCTCGTGGTCACCTTCT 59.887 55.000 2.99 0.00 34.23 2.85
484 486 0.528470 CTCCTCGTGGTCACCTTCTC 59.472 60.000 2.99 0.00 34.23 2.87
485 487 0.898789 TCCTCGTGGTCACCTTCTCC 60.899 60.000 2.99 0.00 34.23 3.71
486 488 0.900647 CCTCGTGGTCACCTTCTCCT 60.901 60.000 0.00 0.00 0.00 3.69
531 533 1.364678 TCTCCATCTTACTCACCCCCA 59.635 52.381 0.00 0.00 0.00 4.96
532 534 1.486726 CTCCATCTTACTCACCCCCAC 59.513 57.143 0.00 0.00 0.00 4.61
533 535 1.203376 TCCATCTTACTCACCCCCACA 60.203 52.381 0.00 0.00 0.00 4.17
534 536 1.846439 CCATCTTACTCACCCCCACAT 59.154 52.381 0.00 0.00 0.00 3.21
535 537 2.158755 CCATCTTACTCACCCCCACATC 60.159 54.545 0.00 0.00 0.00 3.06
536 538 2.335681 TCTTACTCACCCCCACATCA 57.664 50.000 0.00 0.00 0.00 3.07
539 541 1.275666 TACTCACCCCCACATCACAG 58.724 55.000 0.00 0.00 0.00 3.66
546 548 1.213678 CCCCCACATCACAGATCACAT 59.786 52.381 0.00 0.00 0.00 3.21
714 1119 1.148273 GGCCTGTATGCGGATTGGA 59.852 57.895 0.00 0.00 0.00 3.53
754 1171 0.752658 CCACACTCACAGGTGACAGA 59.247 55.000 0.00 0.00 40.13 3.41
755 1172 1.539065 CCACACTCACAGGTGACAGAC 60.539 57.143 0.00 0.00 40.13 3.51
756 1173 1.136891 CACACTCACAGGTGACAGACA 59.863 52.381 0.00 0.00 40.13 3.41
757 1174 1.410517 ACACTCACAGGTGACAGACAG 59.589 52.381 0.00 0.00 40.13 3.51
821 1242 0.962356 GCCAACCACCAGATGACCAG 60.962 60.000 0.00 0.00 0.00 4.00
828 1249 2.226437 CCACCAGATGACCAGAAAAACG 59.774 50.000 0.00 0.00 0.00 3.60
870 1295 1.271982 GCATGCATCCTCCATCCATCT 60.272 52.381 14.21 0.00 0.00 2.90
872 1297 3.560668 GCATGCATCCTCCATCCATCTAA 60.561 47.826 14.21 0.00 0.00 2.10
874 1299 4.090761 TGCATCCTCCATCCATCTAAAC 57.909 45.455 0.00 0.00 0.00 2.01
875 1300 3.718434 TGCATCCTCCATCCATCTAAACT 59.282 43.478 0.00 0.00 0.00 2.66
876 1301 4.907269 TGCATCCTCCATCCATCTAAACTA 59.093 41.667 0.00 0.00 0.00 2.24
877 1302 5.549228 TGCATCCTCCATCCATCTAAACTAT 59.451 40.000 0.00 0.00 0.00 2.12
916 1345 3.181450 GCCTGCACTATTCCATCTACCTT 60.181 47.826 0.00 0.00 0.00 3.50
917 1346 4.636249 CCTGCACTATTCCATCTACCTTC 58.364 47.826 0.00 0.00 0.00 3.46
919 1348 4.298626 TGCACTATTCCATCTACCTTCCT 58.701 43.478 0.00 0.00 0.00 3.36
920 1349 5.464069 TGCACTATTCCATCTACCTTCCTA 58.536 41.667 0.00 0.00 0.00 2.94
921 1350 5.540337 TGCACTATTCCATCTACCTTCCTAG 59.460 44.000 0.00 0.00 0.00 3.02
922 1351 5.540719 GCACTATTCCATCTACCTTCCTAGT 59.459 44.000 0.00 0.00 0.00 2.57
923 1352 6.294843 GCACTATTCCATCTACCTTCCTAGTC 60.295 46.154 0.00 0.00 0.00 2.59
924 1353 7.007723 CACTATTCCATCTACCTTCCTAGTCT 58.992 42.308 0.00 0.00 0.00 3.24
925 1354 7.175990 CACTATTCCATCTACCTTCCTAGTCTC 59.824 44.444 0.00 0.00 0.00 3.36
926 1355 5.735733 TTCCATCTACCTTCCTAGTCTCT 57.264 43.478 0.00 0.00 0.00 3.10
927 1356 6.843473 TTCCATCTACCTTCCTAGTCTCTA 57.157 41.667 0.00 0.00 0.00 2.43
928 1357 6.442541 TCCATCTACCTTCCTAGTCTCTAG 57.557 45.833 0.00 0.00 0.00 2.43
929 1358 5.007682 CCATCTACCTTCCTAGTCTCTAGC 58.992 50.000 0.00 0.00 0.00 3.42
1302 1752 1.811266 CGAGGAGGACGGCATTGTG 60.811 63.158 0.00 0.00 0.00 3.33
1305 1761 1.303317 GGAGGACGGCATTGTGGTT 60.303 57.895 0.00 0.00 0.00 3.67
1370 1838 2.791396 TACAACGAGCGCGAGGTGAC 62.791 60.000 25.51 0.00 45.11 3.67
1380 1854 4.042251 GAGGTGACCTCCTCCCTG 57.958 66.667 20.95 0.00 44.36 4.45
1394 1878 1.415659 CTCCCTGGTGCTCAATAGGAG 59.584 57.143 0.00 0.00 46.93 3.69
1464 1958 8.816144 GTTTTGTTTGCTGATCAATTTGTTCTA 58.184 29.630 0.00 0.00 34.12 2.10
1492 1994 5.404466 TGTTTGGATTGGATTGAATGGAC 57.596 39.130 0.00 0.00 0.00 4.02
1525 2047 1.215382 CAAGGTGTCGATCGGAGCA 59.785 57.895 16.41 9.40 0.00 4.26
1552 2074 3.461773 CTGGAGTGGCCGTCGGAT 61.462 66.667 17.49 0.00 40.66 4.18
1620 2412 8.538701 TGTAAAGGTACGTAATCAATTCCCTTA 58.461 33.333 9.48 0.00 32.40 2.69
1621 2413 7.854557 AAAGGTACGTAATCAATTCCCTTAC 57.145 36.000 9.48 0.00 31.12 2.34
1735 2528 8.589701 TCTATACACATCAGTTAAAGGTCTCA 57.410 34.615 0.00 0.00 0.00 3.27
1741 2534 8.950210 ACACATCAGTTAAAGGTCTCATATTTG 58.050 33.333 0.00 0.00 0.00 2.32
1774 2568 9.947433 TCTTAAAGGTCTTATATTGAAAACGGA 57.053 29.630 0.00 0.00 0.00 4.69
1776 2570 7.625828 AAAGGTCTTATATTGAAAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1796 2590 6.759827 CGGAGGAAATATTTAGAAACGAAGGA 59.240 38.462 0.00 0.00 0.00 3.36
1803 2597 3.881937 TTAGAAACGAAGGAGGTAGCC 57.118 47.619 0.00 0.00 0.00 3.93
1857 2744 3.364465 CGTCGTACATGCACAATTTCCAA 60.364 43.478 0.00 0.00 0.00 3.53
1858 2745 4.671508 CGTCGTACATGCACAATTTCCAAT 60.672 41.667 0.00 0.00 0.00 3.16
1859 2746 5.160641 GTCGTACATGCACAATTTCCAATT 58.839 37.500 0.00 0.00 0.00 2.32
1860 2747 5.633182 GTCGTACATGCACAATTTCCAATTT 59.367 36.000 0.00 0.00 0.00 1.82
1863 2750 4.325972 ACATGCACAATTTCCAATTTCCC 58.674 39.130 0.00 0.00 0.00 3.97
1864 2751 4.202440 ACATGCACAATTTCCAATTTCCCA 60.202 37.500 0.00 0.00 0.00 4.37
1865 2752 4.428294 TGCACAATTTCCAATTTCCCAA 57.572 36.364 0.00 0.00 0.00 4.12
1927 3233 2.508716 AGATGAAGTCCTGCACATGGAT 59.491 45.455 0.00 0.00 35.87 3.41
1928 3234 2.408271 TGAAGTCCTGCACATGGATC 57.592 50.000 0.00 0.00 35.87 3.36
1929 3235 1.065199 TGAAGTCCTGCACATGGATCC 60.065 52.381 4.20 4.20 35.87 3.36
1930 3236 0.107508 AAGTCCTGCACATGGATCCG 60.108 55.000 7.39 0.00 35.87 4.18
1931 3237 1.524621 GTCCTGCACATGGATCCGG 60.525 63.158 7.39 4.34 35.87 5.14
1932 3238 2.903855 CCTGCACATGGATCCGGC 60.904 66.667 7.39 8.80 0.00 6.13
1933 3239 2.191375 CTGCACATGGATCCGGCT 59.809 61.111 7.39 0.00 0.00 5.52
1934 3240 1.452651 CTGCACATGGATCCGGCTT 60.453 57.895 7.39 0.00 0.00 4.35
1935 3241 1.721664 CTGCACATGGATCCGGCTTG 61.722 60.000 7.39 4.84 0.00 4.01
1936 3242 3.113745 CACATGGATCCGGCTTGC 58.886 61.111 7.39 0.00 0.00 4.01
1937 3243 2.124151 ACATGGATCCGGCTTGCC 60.124 61.111 7.39 0.75 0.00 4.52
1938 3244 2.194056 CATGGATCCGGCTTGCCT 59.806 61.111 7.39 0.00 0.00 4.75
1939 3245 2.191513 CATGGATCCGGCTTGCCTG 61.192 63.158 7.39 3.29 0.00 4.85
1940 3246 4.802051 TGGATCCGGCTTGCCTGC 62.802 66.667 7.39 0.00 0.00 4.85
1941 3247 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
1942 3248 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
1943 3249 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
1954 3260 4.172512 CTGCTCCCTCGCCATGCT 62.173 66.667 0.00 0.00 0.00 3.79
1955 3261 4.166888 TGCTCCCTCGCCATGCTC 62.167 66.667 0.00 0.00 0.00 4.26
1956 3262 4.925861 GCTCCCTCGCCATGCTCC 62.926 72.222 0.00 0.00 0.00 4.70
1957 3263 4.247380 CTCCCTCGCCATGCTCCC 62.247 72.222 0.00 0.00 0.00 4.30
1959 3265 3.882326 CCCTCGCCATGCTCCCAT 61.882 66.667 0.00 0.00 0.00 4.00
1960 3266 2.281345 CCTCGCCATGCTCCCATC 60.281 66.667 0.00 0.00 0.00 3.51
1961 3267 2.281345 CTCGCCATGCTCCCATCC 60.281 66.667 0.00 0.00 0.00 3.51
1962 3268 4.240103 TCGCCATGCTCCCATCCG 62.240 66.667 0.00 0.00 0.00 4.18
1963 3269 4.552365 CGCCATGCTCCCATCCGT 62.552 66.667 0.00 0.00 0.00 4.69
1964 3270 2.903855 GCCATGCTCCCATCCGTG 60.904 66.667 0.00 0.00 0.00 4.94
1965 3271 2.903855 CCATGCTCCCATCCGTGC 60.904 66.667 0.00 0.00 0.00 5.34
1966 3272 2.191375 CATGCTCCCATCCGTGCT 59.809 61.111 0.00 0.00 0.00 4.40
1967 3273 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
1968 3274 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
1969 3275 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
1970 3276 3.083349 CTCCCATCCGTGCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
1971 3277 3.391665 CTCCCATCCGTGCTCCCAC 62.392 68.421 0.00 0.00 38.62 4.61
1972 3278 3.402681 CCCATCCGTGCTCCCACT 61.403 66.667 0.00 0.00 39.86 4.00
1973 3279 2.671070 CCATCCGTGCTCCCACTT 59.329 61.111 0.00 0.00 39.86 3.16
1974 3280 1.450312 CCATCCGTGCTCCCACTTC 60.450 63.158 0.00 0.00 39.86 3.01
1975 3281 1.296392 CATCCGTGCTCCCACTTCA 59.704 57.895 0.00 0.00 39.86 3.02
1976 3282 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
1977 3283 0.179000 ATCCGTGCTCCCACTTCATC 59.821 55.000 0.00 0.00 39.86 2.92
1978 3284 1.450312 CCGTGCTCCCACTTCATCC 60.450 63.158 0.00 0.00 39.86 3.51
1979 3285 1.599047 CGTGCTCCCACTTCATCCT 59.401 57.895 0.00 0.00 39.86 3.24
1980 3286 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
1981 3287 1.471676 CGTGCTCCCACTTCATCCTAC 60.472 57.143 0.00 0.00 39.86 3.18
1982 3288 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
1983 3289 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
1984 3290 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.000 0.00 0.00 0.00 5.68
1985 3291 0.325296 TCCCACTTCATCCTACGGCT 60.325 55.000 0.00 0.00 0.00 5.52
1986 3292 0.179073 CCCACTTCATCCTACGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
1987 3293 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
1988 3294 1.471676 CCACTTCATCCTACGGCTGTC 60.472 57.143 0.00 0.00 0.00 3.51
1989 3295 1.204704 CACTTCATCCTACGGCTGTCA 59.795 52.381 0.00 0.00 0.00 3.58
1990 3296 2.111384 ACTTCATCCTACGGCTGTCAT 58.889 47.619 0.00 0.00 0.00 3.06
1991 3297 2.501723 ACTTCATCCTACGGCTGTCATT 59.498 45.455 0.00 0.00 0.00 2.57
1992 3298 3.055094 ACTTCATCCTACGGCTGTCATTT 60.055 43.478 0.00 0.00 0.00 2.32
1993 3299 3.627395 TCATCCTACGGCTGTCATTTT 57.373 42.857 0.00 0.00 0.00 1.82
1994 3300 3.531538 TCATCCTACGGCTGTCATTTTC 58.468 45.455 0.00 0.00 0.00 2.29
1995 3301 3.197766 TCATCCTACGGCTGTCATTTTCT 59.802 43.478 0.00 0.00 0.00 2.52
1996 3302 3.247006 TCCTACGGCTGTCATTTTCTC 57.753 47.619 0.00 0.00 0.00 2.87
1997 3303 2.093658 TCCTACGGCTGTCATTTTCTCC 60.094 50.000 0.00 0.00 0.00 3.71
1998 3304 2.093447 CCTACGGCTGTCATTTTCTCCT 60.093 50.000 0.00 0.00 0.00 3.69
1999 3305 2.568623 ACGGCTGTCATTTTCTCCTT 57.431 45.000 0.00 0.00 0.00 3.36
2000 3306 2.863809 ACGGCTGTCATTTTCTCCTTT 58.136 42.857 0.00 0.00 0.00 3.11
2001 3307 3.222603 ACGGCTGTCATTTTCTCCTTTT 58.777 40.909 0.00 0.00 0.00 2.27
2002 3308 3.636764 ACGGCTGTCATTTTCTCCTTTTT 59.363 39.130 0.00 0.00 0.00 1.94
2059 3365 1.945580 GGGGGCCTTATTTTGTTCCA 58.054 50.000 0.84 0.00 0.00 3.53
2060 3366 2.261729 GGGGGCCTTATTTTGTTCCAA 58.738 47.619 0.84 0.00 0.00 3.53
2061 3367 2.843730 GGGGGCCTTATTTTGTTCCAAT 59.156 45.455 0.84 0.00 0.00 3.16
2062 3368 3.265737 GGGGGCCTTATTTTGTTCCAATT 59.734 43.478 0.84 0.00 0.00 2.32
2063 3369 4.471747 GGGGGCCTTATTTTGTTCCAATTA 59.528 41.667 0.84 0.00 0.00 1.40
2064 3370 5.045505 GGGGGCCTTATTTTGTTCCAATTAA 60.046 40.000 0.84 0.00 0.00 1.40
2065 3371 6.477253 GGGGCCTTATTTTGTTCCAATTAAA 58.523 36.000 0.84 0.00 0.00 1.52
2066 3372 7.116075 GGGGCCTTATTTTGTTCCAATTAAAT 58.884 34.615 0.84 0.00 0.00 1.40
2067 3373 7.282224 GGGGCCTTATTTTGTTCCAATTAAATC 59.718 37.037 0.84 0.00 0.00 2.17
2068 3374 7.826744 GGGCCTTATTTTGTTCCAATTAAATCA 59.173 33.333 0.84 0.00 0.00 2.57
2069 3375 9.394767 GGCCTTATTTTGTTCCAATTAAATCAT 57.605 29.630 0.00 0.00 0.00 2.45
2073 3379 9.730705 TTATTTTGTTCCAATTAAATCATGCCA 57.269 25.926 0.00 0.00 0.00 4.92
2074 3380 7.432350 TTTTGTTCCAATTAAATCATGCCAC 57.568 32.000 0.00 0.00 0.00 5.01
2075 3381 4.742417 TGTTCCAATTAAATCATGCCACG 58.258 39.130 0.00 0.00 0.00 4.94
2076 3382 4.219507 TGTTCCAATTAAATCATGCCACGT 59.780 37.500 0.00 0.00 0.00 4.49
2077 3383 5.416013 TGTTCCAATTAAATCATGCCACGTA 59.584 36.000 0.00 0.00 0.00 3.57
2078 3384 6.096141 TGTTCCAATTAAATCATGCCACGTAT 59.904 34.615 0.00 0.00 0.00 3.06
2079 3385 6.070897 TCCAATTAAATCATGCCACGTATG 57.929 37.500 0.00 0.00 0.00 2.39
2080 3386 4.681025 CCAATTAAATCATGCCACGTATGC 59.319 41.667 2.46 2.46 0.00 3.14
2081 3387 3.600717 TTAAATCATGCCACGTATGCG 57.399 42.857 0.19 0.19 44.93 4.73
2082 3388 0.662619 AAATCATGCCACGTATGCGG 59.337 50.000 8.39 0.00 43.45 5.69
2083 3389 1.165907 AATCATGCCACGTATGCGGG 61.166 55.000 8.39 2.48 43.45 6.13
2084 3390 2.038814 ATCATGCCACGTATGCGGGA 62.039 55.000 7.15 5.28 45.97 5.14
2085 3391 2.108976 ATGCCACGTATGCGGGAG 59.891 61.111 7.15 0.00 45.97 4.30
2097 3403 4.227134 CGGGAGCACGGATGGGAG 62.227 72.222 0.00 0.00 0.00 4.30
2098 3404 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
2099 3405 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
2100 3406 2.512515 GAGCACGGATGGGAGCAC 60.513 66.667 0.00 0.00 0.00 4.40
2101 3407 4.457496 AGCACGGATGGGAGCACG 62.457 66.667 0.00 0.00 0.00 5.34
2103 3409 4.457496 CACGGATGGGAGCACGCT 62.457 66.667 0.00 0.00 0.00 5.07
2104 3410 4.457496 ACGGATGGGAGCACGCTG 62.457 66.667 0.00 0.00 0.00 5.18
2106 3412 4.864334 GGATGGGAGCACGCTGGG 62.864 72.222 0.00 0.00 0.00 4.45
2107 3413 4.864334 GATGGGAGCACGCTGGGG 62.864 72.222 0.00 0.00 0.00 4.96
2119 3425 3.655211 CTGGGGGAGCAGGCAAGT 61.655 66.667 0.00 0.00 0.00 3.16
2120 3426 3.635268 CTGGGGGAGCAGGCAAGTC 62.635 68.421 0.00 0.00 0.00 3.01
2121 3427 3.334054 GGGGGAGCAGGCAAGTCT 61.334 66.667 0.00 0.00 0.00 3.24
2122 3428 2.270527 GGGGAGCAGGCAAGTCTC 59.729 66.667 0.00 0.00 0.00 3.36
2123 3429 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
2124 3430 2.659610 GGAGCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
2125 3431 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
2126 3432 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
2127 3433 2.435059 GCAGGCAAGTCTCGTCCC 60.435 66.667 0.00 0.00 0.00 4.46
2128 3434 2.266055 CAGGCAAGTCTCGTCCCC 59.734 66.667 0.00 0.00 0.00 4.81
2129 3435 2.120718 AGGCAAGTCTCGTCCCCT 59.879 61.111 0.00 0.00 0.00 4.79
2130 3436 2.266055 GGCAAGTCTCGTCCCCTG 59.734 66.667 0.00 0.00 0.00 4.45
2131 3437 2.435059 GCAAGTCTCGTCCCCTGC 60.435 66.667 0.00 0.00 0.00 4.85
2132 3438 3.059982 CAAGTCTCGTCCCCTGCA 58.940 61.111 0.00 0.00 0.00 4.41
2133 3439 1.374758 CAAGTCTCGTCCCCTGCAC 60.375 63.158 0.00 0.00 0.00 4.57
2134 3440 1.837051 AAGTCTCGTCCCCTGCACA 60.837 57.895 0.00 0.00 0.00 4.57
2135 3441 1.194781 AAGTCTCGTCCCCTGCACAT 61.195 55.000 0.00 0.00 0.00 3.21
2136 3442 0.324368 AGTCTCGTCCCCTGCACATA 60.324 55.000 0.00 0.00 0.00 2.29
2137 3443 0.753262 GTCTCGTCCCCTGCACATAT 59.247 55.000 0.00 0.00 0.00 1.78
2143 3449 4.412843 TCGTCCCCTGCACATATATAGAA 58.587 43.478 0.00 0.00 0.00 2.10
2144 3450 4.836175 TCGTCCCCTGCACATATATAGAAA 59.164 41.667 0.00 0.00 0.00 2.52
2211 4037 4.570926 TCTGGGATCCATGAGAATACCTT 58.429 43.478 15.23 0.00 30.82 3.50
2274 4168 4.755266 AACTAATCAGAATACCTGGCGT 57.245 40.909 0.00 0.00 43.12 5.68
2347 4774 1.964223 GATCTACCTTGATCGGCCTCA 59.036 52.381 0.00 0.00 34.34 3.86
2364 4803 3.182967 CCTCATAGTCAACGCTTCACTC 58.817 50.000 0.00 0.00 0.00 3.51
2383 4826 3.244215 ACTCATCTTTTCGAGCCTCACAA 60.244 43.478 0.00 0.00 32.21 3.33
2442 6530 2.771372 GGGGTGCCACATTCCAATATTT 59.229 45.455 0.00 0.00 0.00 1.40
2474 6563 7.336396 AGTGCTACCTCCGTTCTAAAATAATT 58.664 34.615 0.00 0.00 0.00 1.40
2475 6564 7.494952 AGTGCTACCTCCGTTCTAAAATAATTC 59.505 37.037 0.00 0.00 0.00 2.17
2476 6565 7.279313 GTGCTACCTCCGTTCTAAAATAATTCA 59.721 37.037 0.00 0.00 0.00 2.57
2477 6566 7.825270 TGCTACCTCCGTTCTAAAATAATTCAA 59.175 33.333 0.00 0.00 0.00 2.69
2480 6569 8.631480 ACCTCCGTTCTAAAATAATTCAACTT 57.369 30.769 0.00 0.00 0.00 2.66
2481 6570 8.727910 ACCTCCGTTCTAAAATAATTCAACTTC 58.272 33.333 0.00 0.00 0.00 3.01
2482 6571 8.947115 CCTCCGTTCTAAAATAATTCAACTTCT 58.053 33.333 0.00 0.00 0.00 2.85
2604 7190 8.149647 CCTAGAGCATCAAATTAGTCTCATCTT 58.850 37.037 0.00 0.00 37.82 2.40
2654 7240 7.359262 TGATGCACAATTACTGTTGTACTAC 57.641 36.000 0.05 0.05 40.17 2.73
2703 7289 9.777297 ATTTGGTAAAAGTTAAGCATGTTTGAT 57.223 25.926 4.89 0.00 0.00 2.57
2788 7383 6.819649 ACTCGTTCCCGAATAAATTAATCACA 59.180 34.615 0.00 0.00 43.69 3.58
2819 7508 0.167470 CTTGATGCTGGCGTTCACAG 59.833 55.000 0.00 0.00 38.95 3.66
3044 8853 0.250467 ATGCTCCGTGTTTCTGCTGT 60.250 50.000 0.00 0.00 0.00 4.40
3083 8897 6.173427 AGATTACCCAACAGCACAATTTTT 57.827 33.333 0.00 0.00 0.00 1.94
3085 8899 3.902881 ACCCAACAGCACAATTTTTCA 57.097 38.095 0.00 0.00 0.00 2.69
3387 9201 2.226912 CGTTGGAAATTCGGTTAGCCAA 59.773 45.455 0.00 0.00 34.12 4.52
3417 9243 6.142480 CGTGCACTATGTTCTAATACTACTGC 59.858 42.308 16.19 0.00 0.00 4.40
3600 9433 2.660490 TGGTACGTAAACTCGGTTTCG 58.340 47.619 0.00 10.58 37.01 3.46
3619 9461 6.128090 GGTTTCGTCATAGACCCCTTTAAAAG 60.128 42.308 0.00 0.00 0.00 2.27
3650 9492 0.395311 CCAGGCCTCTGCATCATTGT 60.395 55.000 0.00 0.00 39.61 2.71
3707 9692 5.748402 AGTATCCAAATGAGCATGTTGAGA 58.252 37.500 0.00 0.00 0.00 3.27
3975 9985 1.589716 GGATGCTTGGACCTGTGCAC 61.590 60.000 10.75 10.75 38.29 4.57
4069 10079 3.131046 ACCAGCAAACCTGTTCAAGAAAG 59.869 43.478 0.00 0.00 40.06 2.62
4190 10223 2.088423 TGCAGAAAGTGTCGTTTTGGT 58.912 42.857 0.00 0.00 0.00 3.67
4401 11817 3.364023 CACACACCTTAAGATCGAACGAC 59.636 47.826 3.36 0.00 0.00 4.34
4509 11939 1.825090 ATGTGATGTCATTGCACCGT 58.175 45.000 0.00 0.00 0.00 4.83
4606 12036 1.302033 AACAAGACAGAGCCAGCCG 60.302 57.895 0.00 0.00 0.00 5.52
5156 12619 5.467035 TCAACCCTTTAATTCTTTGCTGG 57.533 39.130 0.00 0.00 0.00 4.85
5227 12706 4.937620 ACATTTACTGAAGCGTCATGACAT 59.062 37.500 24.93 10.52 31.85 3.06
5319 12807 9.753674 ACTTACATTAGATTCTCCAAAAATCCA 57.246 29.630 0.00 0.00 34.34 3.41
5509 12999 5.934625 ACAGACCTTAGAATGCAGTAACAAG 59.065 40.000 0.00 0.00 0.00 3.16
5585 13075 7.051623 AGCGAAGGAATATTTGTGGTATAACA 58.948 34.615 0.00 0.00 0.00 2.41
5618 13112 1.620739 GCAGAGGAGGGAGATGTGCA 61.621 60.000 0.00 0.00 33.72 4.57
5695 14142 0.257039 CAGCATAGGAAGCCCAACCT 59.743 55.000 0.00 0.00 39.95 3.50
5750 14197 3.435186 GCCAGGTCTTTGCCGAGC 61.435 66.667 0.00 0.00 0.00 5.03
5828 14277 8.992835 AAATGAAAAGGAATAAGATTGCTGTC 57.007 30.769 0.00 0.00 0.00 3.51
5860 14309 5.570320 AGTGCAAACCCAGTAAACATAGAT 58.430 37.500 0.00 0.00 0.00 1.98
5899 14348 3.659089 CTAGTCGTTGGTGGGGCCG 62.659 68.421 0.00 0.00 41.21 6.13
5952 14401 3.206211 AAACACGGCCAATGTGCGG 62.206 57.895 10.31 0.00 41.03 5.69
5960 14409 2.108568 CCAATGTGCGGCATCATCA 58.891 52.632 5.72 0.00 36.67 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.197168 TGATTTTATTTGGCCTCTCATCCTT 58.803 36.000 3.32 0.00 0.00 3.36
78 79 1.899814 TCTCAAGGTACGCACATCCTT 59.100 47.619 0.00 0.00 41.53 3.36
151 152 4.065088 CTCACATCCTCGGTTCTCAAAAA 58.935 43.478 0.00 0.00 0.00 1.94
152 153 3.071023 ACTCACATCCTCGGTTCTCAAAA 59.929 43.478 0.00 0.00 0.00 2.44
153 154 2.632996 ACTCACATCCTCGGTTCTCAAA 59.367 45.455 0.00 0.00 0.00 2.69
154 155 2.248248 ACTCACATCCTCGGTTCTCAA 58.752 47.619 0.00 0.00 0.00 3.02
155 156 1.924731 ACTCACATCCTCGGTTCTCA 58.075 50.000 0.00 0.00 0.00 3.27
156 157 2.099427 GGTACTCACATCCTCGGTTCTC 59.901 54.545 0.00 0.00 0.00 2.87
157 158 2.100989 GGTACTCACATCCTCGGTTCT 58.899 52.381 0.00 0.00 0.00 3.01
158 159 2.100989 AGGTACTCACATCCTCGGTTC 58.899 52.381 0.00 0.00 0.00 3.62
159 160 2.233305 AGGTACTCACATCCTCGGTT 57.767 50.000 0.00 0.00 0.00 4.44
160 161 1.825474 CAAGGTACTCACATCCTCGGT 59.175 52.381 0.00 0.00 38.49 4.69
161 162 2.099921 CTCAAGGTACTCACATCCTCGG 59.900 54.545 0.00 0.00 38.49 4.63
162 163 3.017442 TCTCAAGGTACTCACATCCTCG 58.983 50.000 0.00 0.00 38.49 4.63
163 164 3.383185 CCTCTCAAGGTACTCACATCCTC 59.617 52.174 0.00 0.00 38.49 3.71
164 165 3.370104 CCTCTCAAGGTACTCACATCCT 58.630 50.000 0.00 0.00 38.49 3.24
165 166 2.159028 GCCTCTCAAGGTACTCACATCC 60.159 54.545 0.00 0.00 45.34 3.51
166 167 2.159028 GGCCTCTCAAGGTACTCACATC 60.159 54.545 0.00 0.00 45.34 3.06
167 168 1.834263 GGCCTCTCAAGGTACTCACAT 59.166 52.381 0.00 0.00 45.34 3.21
168 169 1.267121 GGCCTCTCAAGGTACTCACA 58.733 55.000 0.00 0.00 45.34 3.58
169 170 1.267121 TGGCCTCTCAAGGTACTCAC 58.733 55.000 3.32 0.00 45.34 3.51
170 171 2.024176 TTGGCCTCTCAAGGTACTCA 57.976 50.000 3.32 0.00 45.34 3.41
171 172 3.636153 ATTTGGCCTCTCAAGGTACTC 57.364 47.619 3.32 0.00 45.34 2.59
172 173 5.514500 TTTATTTGGCCTCTCAAGGTACT 57.486 39.130 3.32 0.00 45.34 2.73
173 174 6.377146 TGATTTTATTTGGCCTCTCAAGGTAC 59.623 38.462 3.32 0.00 45.34 3.34
174 175 6.489603 TGATTTTATTTGGCCTCTCAAGGTA 58.510 36.000 3.32 0.00 45.34 3.08
175 176 5.332743 TGATTTTATTTGGCCTCTCAAGGT 58.667 37.500 3.32 0.00 45.34 3.50
176 177 5.653769 TCTGATTTTATTTGGCCTCTCAAGG 59.346 40.000 3.32 0.00 46.44 3.61
177 178 6.764308 TCTGATTTTATTTGGCCTCTCAAG 57.236 37.500 3.32 0.00 0.00 3.02
178 179 6.153340 CCTTCTGATTTTATTTGGCCTCTCAA 59.847 38.462 3.32 0.00 0.00 3.02
179 180 5.653769 CCTTCTGATTTTATTTGGCCTCTCA 59.346 40.000 3.32 0.00 0.00 3.27
200 201 1.460689 TCCAACGGTCCAGTCCCTT 60.461 57.895 0.00 0.00 0.00 3.95
214 215 3.515502 CTCAAGGTACTCACATCCTCCAA 59.484 47.826 0.00 0.00 38.49 3.53
220 221 2.159028 GGCCTCTCAAGGTACTCACATC 60.159 54.545 0.00 0.00 45.34 3.06
223 224 1.267121 TGGCCTCTCAAGGTACTCAC 58.733 55.000 3.32 0.00 45.34 3.51
234 235 4.582240 CCTCCTGATTTTATTTGGCCTCTC 59.418 45.833 3.32 0.00 0.00 3.20
258 259 3.706594 TCATATCCTCCAGTGGTTCAGTC 59.293 47.826 9.54 0.00 0.00 3.51
259 260 3.708631 CTCATATCCTCCAGTGGTTCAGT 59.291 47.826 9.54 0.00 0.00 3.41
260 261 3.708631 ACTCATATCCTCCAGTGGTTCAG 59.291 47.826 9.54 0.00 0.00 3.02
261 262 3.724478 ACTCATATCCTCCAGTGGTTCA 58.276 45.455 9.54 0.00 0.00 3.18
262 263 4.039366 GGTACTCATATCCTCCAGTGGTTC 59.961 50.000 9.54 0.00 0.00 3.62
263 264 3.967987 GGTACTCATATCCTCCAGTGGTT 59.032 47.826 9.54 0.00 0.00 3.67
264 265 3.207777 AGGTACTCATATCCTCCAGTGGT 59.792 47.826 9.54 0.00 0.00 4.16
265 266 3.850752 AGGTACTCATATCCTCCAGTGG 58.149 50.000 1.40 1.40 0.00 4.00
266 267 8.651589 TTATAAGGTACTCATATCCTCCAGTG 57.348 38.462 0.00 0.00 38.49 3.66
267 268 8.679725 TCTTATAAGGTACTCATATCCTCCAGT 58.320 37.037 12.54 0.00 38.49 4.00
268 269 9.184523 CTCTTATAAGGTACTCATATCCTCCAG 57.815 40.741 12.54 0.00 38.49 3.86
269 270 8.116669 CCTCTTATAAGGTACTCATATCCTCCA 58.883 40.741 12.54 0.00 38.49 3.86
270 271 7.068962 GCCTCTTATAAGGTACTCATATCCTCC 59.931 44.444 12.54 0.00 38.49 4.30
271 272 7.068962 GGCCTCTTATAAGGTACTCATATCCTC 59.931 44.444 12.54 0.00 38.49 3.71
272 273 6.898521 GGCCTCTTATAAGGTACTCATATCCT 59.101 42.308 12.54 0.00 38.49 3.24
273 274 6.668283 TGGCCTCTTATAAGGTACTCATATCC 59.332 42.308 12.54 1.68 38.49 2.59
274 275 7.719871 TGGCCTCTTATAAGGTACTCATATC 57.280 40.000 12.54 0.00 38.49 1.63
275 276 8.506196 TTTGGCCTCTTATAAGGTACTCATAT 57.494 34.615 12.54 0.00 38.49 1.78
276 277 7.924358 TTTGGCCTCTTATAAGGTACTCATA 57.076 36.000 12.54 0.00 38.49 2.15
277 278 6.824958 TTTGGCCTCTTATAAGGTACTCAT 57.175 37.500 12.54 0.00 38.49 2.90
278 279 6.824958 ATTTGGCCTCTTATAAGGTACTCA 57.175 37.500 12.54 3.19 38.49 3.41
279 280 9.623000 TTTTATTTGGCCTCTTATAAGGTACTC 57.377 33.333 12.54 0.83 38.49 2.59
288 289 8.352942 CGCTTCTAATTTTATTTGGCCTCTTAT 58.647 33.333 3.32 0.00 0.00 1.73
289 290 7.554835 TCGCTTCTAATTTTATTTGGCCTCTTA 59.445 33.333 3.32 0.00 0.00 2.10
290 291 6.377146 TCGCTTCTAATTTTATTTGGCCTCTT 59.623 34.615 3.32 0.00 0.00 2.85
291 292 5.885912 TCGCTTCTAATTTTATTTGGCCTCT 59.114 36.000 3.32 0.00 0.00 3.69
292 293 5.971792 GTCGCTTCTAATTTTATTTGGCCTC 59.028 40.000 3.32 0.00 0.00 4.70
293 294 5.652452 AGTCGCTTCTAATTTTATTTGGCCT 59.348 36.000 3.32 0.00 0.00 5.19
294 295 5.743872 CAGTCGCTTCTAATTTTATTTGGCC 59.256 40.000 0.00 0.00 0.00 5.36
295 296 5.743872 CCAGTCGCTTCTAATTTTATTTGGC 59.256 40.000 0.00 0.00 0.00 4.52
296 297 6.967199 GTCCAGTCGCTTCTAATTTTATTTGG 59.033 38.462 0.00 0.00 0.00 3.28
297 298 6.967199 GGTCCAGTCGCTTCTAATTTTATTTG 59.033 38.462 0.00 0.00 0.00 2.32
298 299 6.183360 CGGTCCAGTCGCTTCTAATTTTATTT 60.183 38.462 0.00 0.00 0.00 1.40
299 300 5.293569 CGGTCCAGTCGCTTCTAATTTTATT 59.706 40.000 0.00 0.00 0.00 1.40
300 301 4.809426 CGGTCCAGTCGCTTCTAATTTTAT 59.191 41.667 0.00 0.00 0.00 1.40
301 302 4.178540 CGGTCCAGTCGCTTCTAATTTTA 58.821 43.478 0.00 0.00 0.00 1.52
302 303 3.000727 CGGTCCAGTCGCTTCTAATTTT 58.999 45.455 0.00 0.00 0.00 1.82
303 304 2.618053 CGGTCCAGTCGCTTCTAATTT 58.382 47.619 0.00 0.00 0.00 1.82
304 305 2.295253 CGGTCCAGTCGCTTCTAATT 57.705 50.000 0.00 0.00 0.00 1.40
313 314 4.135153 CCTCCAGCGGTCCAGTCG 62.135 72.222 0.00 0.00 0.00 4.18
314 315 2.060980 ATCCTCCAGCGGTCCAGTC 61.061 63.158 0.00 0.00 0.00 3.51
334 335 0.895530 TTGGCCTCTCAAGGTACTCG 59.104 55.000 3.32 0.00 45.34 4.18
366 367 1.847798 AATCTTACCGCCAGCCACCA 61.848 55.000 0.00 0.00 0.00 4.17
404 406 1.144057 GTGGCATACCCAGTCGAGG 59.856 63.158 0.00 0.00 46.54 4.63
405 407 1.144057 GGTGGCATACCCAGTCGAG 59.856 63.158 0.00 0.00 46.54 4.04
427 429 3.798954 GAAGAGAGCGGGATGGCCG 62.799 68.421 0.00 0.00 33.83 6.13
432 434 3.541713 GCCGGAAGAGAGCGGGAT 61.542 66.667 5.05 0.00 0.00 3.85
463 465 0.244178 GAAGGTGACCACGAGGAGAC 59.756 60.000 5.68 1.11 38.69 3.36
470 472 1.202582 CTGTAGGAGAAGGTGACCACG 59.797 57.143 3.63 0.00 0.00 4.94
471 473 1.066787 GCTGTAGGAGAAGGTGACCAC 60.067 57.143 3.63 0.00 0.00 4.16
472 474 1.267121 GCTGTAGGAGAAGGTGACCA 58.733 55.000 3.63 0.00 0.00 4.02
473 475 0.537653 GGCTGTAGGAGAAGGTGACC 59.462 60.000 0.00 0.00 0.00 4.02
474 476 0.537653 GGGCTGTAGGAGAAGGTGAC 59.462 60.000 0.00 0.00 0.00 3.67
475 477 0.970937 CGGGCTGTAGGAGAAGGTGA 60.971 60.000 0.00 0.00 0.00 4.02
476 478 1.517832 CGGGCTGTAGGAGAAGGTG 59.482 63.158 0.00 0.00 0.00 4.00
477 479 2.359967 GCGGGCTGTAGGAGAAGGT 61.360 63.158 0.00 0.00 0.00 3.50
478 480 2.501610 GCGGGCTGTAGGAGAAGG 59.498 66.667 0.00 0.00 0.00 3.46
479 481 2.501610 GGCGGGCTGTAGGAGAAG 59.498 66.667 0.00 0.00 0.00 2.85
480 482 3.081409 GGGCGGGCTGTAGGAGAA 61.081 66.667 0.26 0.00 0.00 2.87
481 483 4.075793 AGGGCGGGCTGTAGGAGA 62.076 66.667 0.26 0.00 0.00 3.71
482 484 3.854669 CAGGGCGGGCTGTAGGAG 61.855 72.222 0.26 0.00 0.00 3.69
531 533 1.282738 TGGCCATGTGATCTGTGATGT 59.717 47.619 0.00 0.00 0.00 3.06
532 534 1.947456 CTGGCCATGTGATCTGTGATG 59.053 52.381 5.51 0.00 0.00 3.07
533 535 1.749635 GCTGGCCATGTGATCTGTGAT 60.750 52.381 5.51 0.00 0.00 3.06
534 536 0.393402 GCTGGCCATGTGATCTGTGA 60.393 55.000 5.51 0.00 0.00 3.58
535 537 1.381928 GGCTGGCCATGTGATCTGTG 61.382 60.000 5.51 0.00 35.81 3.66
536 538 1.077212 GGCTGGCCATGTGATCTGT 60.077 57.895 5.51 0.00 35.81 3.41
539 541 1.228063 ATCGGCTGGCCATGTGATC 60.228 57.895 5.51 0.00 35.37 2.92
714 1119 3.358118 GAAGTAGTAGGAGCACCACTCT 58.642 50.000 2.07 0.23 45.48 3.24
757 1174 1.153429 GCCATGTAGTCGGGTGACC 60.153 63.158 0.00 0.00 46.74 4.02
828 1249 4.611355 GCACATGGAATATGTACGTGATGC 60.611 45.833 0.00 0.00 0.00 3.91
916 1345 1.141254 CGACTGGGCTAGAGACTAGGA 59.859 57.143 4.33 0.00 35.75 2.94
917 1346 1.134037 ACGACTGGGCTAGAGACTAGG 60.134 57.143 4.33 0.00 35.75 3.02
919 1348 2.017623 GCACGACTGGGCTAGAGACTA 61.018 57.143 4.33 0.00 0.00 2.59
920 1349 1.316706 GCACGACTGGGCTAGAGACT 61.317 60.000 4.33 0.00 0.00 3.24
921 1350 1.139947 GCACGACTGGGCTAGAGAC 59.860 63.158 4.33 0.00 0.00 3.36
922 1351 0.255033 TAGCACGACTGGGCTAGAGA 59.745 55.000 4.33 0.00 41.41 3.10
923 1352 2.795165 TAGCACGACTGGGCTAGAG 58.205 57.895 4.33 0.46 41.41 2.43
926 1355 1.043116 ATGCTAGCACGACTGGGCTA 61.043 55.000 22.07 0.00 41.41 3.93
927 1356 2.303549 GATGCTAGCACGACTGGGCT 62.304 60.000 22.07 0.00 43.94 5.19
928 1357 1.884926 GATGCTAGCACGACTGGGC 60.885 63.158 22.07 0.00 0.00 5.36
929 1358 0.529337 CAGATGCTAGCACGACTGGG 60.529 60.000 26.74 12.62 0.00 4.45
1119 1569 2.925170 AGGAGAACCAGCAGCCGT 60.925 61.111 0.00 0.00 38.94 5.68
1131 1581 2.685017 ATGGCCAGCGACAGGAGA 60.685 61.111 13.05 0.00 0.00 3.71
1370 1838 1.277580 ATTGAGCACCAGGGAGGAGG 61.278 60.000 0.00 0.00 41.22 4.30
1380 1854 2.877168 CAGCATTCTCCTATTGAGCACC 59.123 50.000 0.00 0.00 41.18 5.01
1394 1878 3.546815 CCGGTCAAAATCGATCAGCATTC 60.547 47.826 0.00 0.00 0.00 2.67
1399 1887 0.301687 CGCCGGTCAAAATCGATCAG 59.698 55.000 1.90 0.00 0.00 2.90
1464 1958 5.720371 TCAATCCAATCCAAACAAACGAT 57.280 34.783 0.00 0.00 0.00 3.73
1492 1994 2.742053 CACCTTGTACACCTTCATTCCG 59.258 50.000 0.00 0.00 0.00 4.30
1552 2074 1.221566 CACCTGGATCACCATGCGA 59.778 57.895 0.00 0.00 45.87 5.10
1716 2509 8.400947 CCAAATATGAGACCTTTAACTGATGTG 58.599 37.037 0.00 0.00 0.00 3.21
1722 2515 9.981460 AGATTTCCAAATATGAGACCTTTAACT 57.019 29.630 0.00 0.00 0.00 2.24
1751 2545 8.542080 TCCTCCGTTTTCAATATAAGACCTTTA 58.458 33.333 0.00 0.00 0.00 1.85
1764 2558 9.902196 GTTTCTAAATATTTCCTCCGTTTTCAA 57.098 29.630 3.39 0.00 0.00 2.69
1765 2559 8.231837 CGTTTCTAAATATTTCCTCCGTTTTCA 58.768 33.333 3.39 0.00 0.00 2.69
1766 2560 8.445493 TCGTTTCTAAATATTTCCTCCGTTTTC 58.555 33.333 3.39 0.00 0.00 2.29
1767 2561 8.326680 TCGTTTCTAAATATTTCCTCCGTTTT 57.673 30.769 3.39 0.00 0.00 2.43
1768 2562 7.910441 TCGTTTCTAAATATTTCCTCCGTTT 57.090 32.000 3.39 0.00 0.00 3.60
1769 2563 7.065443 CCTTCGTTTCTAAATATTTCCTCCGTT 59.935 37.037 3.39 0.00 0.00 4.44
1770 2564 6.537660 CCTTCGTTTCTAAATATTTCCTCCGT 59.462 38.462 3.39 0.00 0.00 4.69
1771 2565 6.759827 TCCTTCGTTTCTAAATATTTCCTCCG 59.240 38.462 3.39 2.88 0.00 4.63
1772 2566 7.226918 CCTCCTTCGTTTCTAAATATTTCCTCC 59.773 40.741 3.39 0.00 0.00 4.30
1773 2567 7.769507 ACCTCCTTCGTTTCTAAATATTTCCTC 59.230 37.037 3.39 0.00 0.00 3.71
1774 2568 7.631007 ACCTCCTTCGTTTCTAAATATTTCCT 58.369 34.615 3.39 0.00 0.00 3.36
1775 2569 7.860918 ACCTCCTTCGTTTCTAAATATTTCC 57.139 36.000 3.39 0.00 0.00 3.13
1776 2570 8.549548 GCTACCTCCTTCGTTTCTAAATATTTC 58.450 37.037 3.39 0.00 0.00 2.17
1796 2590 1.675641 CTTTTGCAGCGGGCTACCT 60.676 57.895 5.05 0.00 45.15 3.08
1857 2744 5.061721 AGTAGTCCACACTTTTGGGAAAT 57.938 39.130 0.00 0.00 37.24 2.17
1858 2745 4.513406 AGTAGTCCACACTTTTGGGAAA 57.487 40.909 0.00 0.00 37.24 3.13
1859 2746 4.657039 ACTAGTAGTCCACACTTTTGGGAA 59.343 41.667 0.00 0.00 37.24 3.97
1860 2747 4.228824 ACTAGTAGTCCACACTTTTGGGA 58.771 43.478 0.00 0.00 37.24 4.37
1863 2750 7.630924 CAAGAAACTAGTAGTCCACACTTTTG 58.369 38.462 2.58 0.00 33.62 2.44
1864 2751 6.260271 GCAAGAAACTAGTAGTCCACACTTTT 59.740 38.462 2.58 0.00 33.62 2.27
1865 2752 5.758784 GCAAGAAACTAGTAGTCCACACTTT 59.241 40.000 2.58 0.00 33.62 2.66
1937 3243 4.172512 AGCATGGCGAGGGAGCAG 62.173 66.667 0.00 0.00 39.27 4.24
1938 3244 4.166888 GAGCATGGCGAGGGAGCA 62.167 66.667 0.00 0.00 39.27 4.26
1939 3245 4.925861 GGAGCATGGCGAGGGAGC 62.926 72.222 0.00 0.00 0.00 4.70
1940 3246 4.247380 GGGAGCATGGCGAGGGAG 62.247 72.222 0.00 0.00 0.00 4.30
1942 3248 3.839353 GATGGGAGCATGGCGAGGG 62.839 68.421 0.00 0.00 0.00 4.30
1943 3249 2.281345 GATGGGAGCATGGCGAGG 60.281 66.667 0.00 0.00 0.00 4.63
1944 3250 2.281345 GGATGGGAGCATGGCGAG 60.281 66.667 0.00 0.00 0.00 5.03
1945 3251 4.240103 CGGATGGGAGCATGGCGA 62.240 66.667 0.00 0.00 0.00 5.54
1946 3252 4.552365 ACGGATGGGAGCATGGCG 62.552 66.667 0.00 0.00 0.00 5.69
1947 3253 2.903855 CACGGATGGGAGCATGGC 60.904 66.667 0.00 0.00 0.00 4.40
1948 3254 2.903855 GCACGGATGGGAGCATGG 60.904 66.667 0.00 0.00 0.00 3.66
1949 3255 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
1950 3256 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
1951 3257 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
1952 3258 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
1953 3259 3.083349 TGGGAGCACGGATGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
1954 3260 3.399181 GTGGGAGCACGGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
1955 3261 2.876368 GAAGTGGGAGCACGGATGGG 62.876 65.000 0.00 0.00 0.00 4.00
1956 3262 1.450312 GAAGTGGGAGCACGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
1957 3263 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
1958 3264 0.179000 GATGAAGTGGGAGCACGGAT 59.821 55.000 0.00 0.00 0.00 4.18
1959 3265 1.596934 GATGAAGTGGGAGCACGGA 59.403 57.895 0.00 0.00 0.00 4.69
1960 3266 1.450312 GGATGAAGTGGGAGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
1961 3267 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
1962 3268 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
1963 3269 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
1964 3270 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
1978 3284 3.252974 AGGAGAAAATGACAGCCGTAG 57.747 47.619 0.00 0.00 0.00 3.51
1979 3285 3.695830 AAGGAGAAAATGACAGCCGTA 57.304 42.857 0.00 0.00 0.00 4.02
1980 3286 2.568623 AAGGAGAAAATGACAGCCGT 57.431 45.000 0.00 0.00 0.00 5.68
1981 3287 3.923017 AAAAGGAGAAAATGACAGCCG 57.077 42.857 0.00 0.00 0.00 5.52
2040 3346 1.945580 TGGAACAAAATAAGGCCCCC 58.054 50.000 0.00 0.00 31.92 5.40
2053 3359 4.219507 ACGTGGCATGATTTAATTGGAACA 59.780 37.500 14.82 0.00 0.00 3.18
2054 3360 4.743493 ACGTGGCATGATTTAATTGGAAC 58.257 39.130 14.82 0.00 0.00 3.62
2055 3361 6.502652 CATACGTGGCATGATTTAATTGGAA 58.497 36.000 14.82 0.00 0.00 3.53
2056 3362 5.507149 GCATACGTGGCATGATTTAATTGGA 60.507 40.000 14.82 0.00 0.00 3.53
2057 3363 4.681025 GCATACGTGGCATGATTTAATTGG 59.319 41.667 14.82 0.00 0.00 3.16
2058 3364 4.379498 CGCATACGTGGCATGATTTAATTG 59.621 41.667 14.82 1.54 33.53 2.32
2059 3365 4.536065 CGCATACGTGGCATGATTTAATT 58.464 39.130 14.82 0.00 33.53 1.40
2060 3366 3.058293 CCGCATACGTGGCATGATTTAAT 60.058 43.478 14.82 0.00 35.59 1.40
2061 3367 2.289274 CCGCATACGTGGCATGATTTAA 59.711 45.455 14.82 0.00 35.59 1.52
2062 3368 1.870402 CCGCATACGTGGCATGATTTA 59.130 47.619 14.82 0.00 35.59 1.40
2063 3369 0.662619 CCGCATACGTGGCATGATTT 59.337 50.000 14.82 0.00 35.59 2.17
2064 3370 1.165907 CCCGCATACGTGGCATGATT 61.166 55.000 14.82 0.00 41.87 2.57
2065 3371 1.597854 CCCGCATACGTGGCATGAT 60.598 57.895 14.82 0.00 41.87 2.45
2066 3372 2.203001 CCCGCATACGTGGCATGA 60.203 61.111 14.82 0.00 41.87 3.07
2067 3373 2.203001 TCCCGCATACGTGGCATG 60.203 61.111 4.87 4.87 41.87 4.06
2068 3374 2.108976 CTCCCGCATACGTGGCAT 59.891 61.111 13.38 0.00 41.87 4.40
2069 3375 4.830765 GCTCCCGCATACGTGGCA 62.831 66.667 13.38 0.00 41.87 4.92
2070 3376 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
2080 3386 4.227134 CTCCCATCCGTGCTCCCG 62.227 72.222 0.00 0.00 0.00 5.14
2081 3387 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
2082 3388 3.785859 TGCTCCCATCCGTGCTCC 61.786 66.667 0.00 0.00 0.00 4.70
2083 3389 2.512515 GTGCTCCCATCCGTGCTC 60.513 66.667 0.00 0.00 0.00 4.26
2084 3390 4.457496 CGTGCTCCCATCCGTGCT 62.457 66.667 0.00 0.00 0.00 4.40
2086 3392 4.457496 AGCGTGCTCCCATCCGTG 62.457 66.667 0.00 0.00 0.00 4.94
2087 3393 4.457496 CAGCGTGCTCCCATCCGT 62.457 66.667 0.00 0.00 0.00 4.69
2089 3395 4.864334 CCCAGCGTGCTCCCATCC 62.864 72.222 0.00 0.00 0.00 3.51
2090 3396 4.864334 CCCCAGCGTGCTCCCATC 62.864 72.222 0.00 0.00 0.00 3.51
2102 3408 3.635268 GACTTGCCTGCTCCCCCAG 62.635 68.421 0.00 0.00 0.00 4.45
2103 3409 3.650950 GACTTGCCTGCTCCCCCA 61.651 66.667 0.00 0.00 0.00 4.96
2104 3410 3.334054 AGACTTGCCTGCTCCCCC 61.334 66.667 0.00 0.00 0.00 5.40
2105 3411 2.270527 GAGACTTGCCTGCTCCCC 59.729 66.667 0.00 0.00 0.00 4.81
2106 3412 2.125350 CGAGACTTGCCTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
2107 3413 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
2108 3414 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
2109 3415 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
2110 3416 2.435059 GGGACGAGACTTGCCTGC 60.435 66.667 0.00 0.00 0.00 4.85
2111 3417 2.266055 GGGGACGAGACTTGCCTG 59.734 66.667 0.00 0.00 0.00 4.85
2112 3418 2.120718 AGGGGACGAGACTTGCCT 59.879 61.111 0.00 0.00 0.00 4.75
2113 3419 2.266055 CAGGGGACGAGACTTGCC 59.734 66.667 0.00 0.00 0.00 4.52
2114 3420 2.435059 GCAGGGGACGAGACTTGC 60.435 66.667 0.00 0.00 0.00 4.01
2115 3421 1.374758 GTGCAGGGGACGAGACTTG 60.375 63.158 0.00 0.00 0.00 3.16
2116 3422 1.194781 ATGTGCAGGGGACGAGACTT 61.195 55.000 0.00 0.00 0.00 3.01
2117 3423 0.324368 TATGTGCAGGGGACGAGACT 60.324 55.000 0.00 0.00 0.00 3.24
2118 3424 0.753262 ATATGTGCAGGGGACGAGAC 59.247 55.000 0.00 0.00 0.00 3.36
2119 3425 2.375014 TATATGTGCAGGGGACGAGA 57.625 50.000 0.00 0.00 0.00 4.04
2120 3426 4.017126 TCTATATATGTGCAGGGGACGAG 58.983 47.826 0.00 0.00 0.00 4.18
2121 3427 4.042271 TCTATATATGTGCAGGGGACGA 57.958 45.455 0.00 0.00 0.00 4.20
2122 3428 4.801330 TTCTATATATGTGCAGGGGACG 57.199 45.455 0.00 0.00 0.00 4.79
2123 3429 5.812642 CGATTTCTATATATGTGCAGGGGAC 59.187 44.000 0.00 0.00 0.00 4.46
2124 3430 5.719563 TCGATTTCTATATATGTGCAGGGGA 59.280 40.000 0.00 0.00 0.00 4.81
2125 3431 5.977635 TCGATTTCTATATATGTGCAGGGG 58.022 41.667 0.00 0.00 0.00 4.79
2126 3432 6.419116 CGATCGATTTCTATATATGTGCAGGG 59.581 42.308 10.26 0.00 0.00 4.45
2127 3433 6.975197 ACGATCGATTTCTATATATGTGCAGG 59.025 38.462 24.34 0.00 0.00 4.85
2128 3434 7.977490 ACGATCGATTTCTATATATGTGCAG 57.023 36.000 24.34 0.00 0.00 4.41
2129 3435 8.129211 CCTACGATCGATTTCTATATATGTGCA 58.871 37.037 24.34 0.00 0.00 4.57
2130 3436 7.113684 GCCTACGATCGATTTCTATATATGTGC 59.886 40.741 24.34 0.46 0.00 4.57
2131 3437 7.591795 GGCCTACGATCGATTTCTATATATGTG 59.408 40.741 24.34 0.00 0.00 3.21
2132 3438 7.284716 TGGCCTACGATCGATTTCTATATATGT 59.715 37.037 24.34 0.00 0.00 2.29
2133 3439 7.649057 TGGCCTACGATCGATTTCTATATATG 58.351 38.462 24.34 0.00 0.00 1.78
2134 3440 7.818997 TGGCCTACGATCGATTTCTATATAT 57.181 36.000 24.34 0.00 0.00 0.86
2135 3441 7.121611 TGTTGGCCTACGATCGATTTCTATATA 59.878 37.037 24.34 0.00 0.00 0.86
2136 3442 6.071560 TGTTGGCCTACGATCGATTTCTATAT 60.072 38.462 24.34 0.00 0.00 0.86
2137 3443 5.242171 TGTTGGCCTACGATCGATTTCTATA 59.758 40.000 24.34 0.19 0.00 1.31
2143 3449 2.277084 GTTGTTGGCCTACGATCGATT 58.723 47.619 24.34 2.14 0.00 3.34
2144 3450 1.206132 TGTTGTTGGCCTACGATCGAT 59.794 47.619 24.34 8.79 0.00 3.59
2259 4147 2.236146 ACATGAACGCCAGGTATTCTGA 59.764 45.455 0.00 0.00 46.18 3.27
2274 4168 2.229792 GTTCCTTGCTGGTCACATGAA 58.770 47.619 0.00 0.00 37.07 2.57
2347 4774 4.727507 AGATGAGTGAAGCGTTGACTAT 57.272 40.909 0.00 0.00 0.00 2.12
2364 4803 4.488126 TTTTGTGAGGCTCGAAAAGATG 57.512 40.909 16.18 0.00 0.00 2.90
2442 6530 2.372264 ACGGAGGTAGCACTATTCGAA 58.628 47.619 0.00 0.00 0.00 3.71
2507 6596 7.701445 AGCTTGATTTTCGATAAATCCAGAAG 58.299 34.615 23.09 19.69 36.17 2.85
2639 7225 8.528643 TGTGCTAAGATGTAGTACAACAGTAAT 58.471 33.333 7.16 0.00 37.25 1.89
2788 7383 3.332919 CAGCATCAAGAGTGTAGTGCTT 58.667 45.455 0.00 0.00 37.13 3.91
2819 7508 5.712152 AGTCTTGATGATGAAACAAACCC 57.288 39.130 0.00 0.00 0.00 4.11
2916 8110 8.265055 TCTCGGAATTAACCAAGTCTCATTTAT 58.735 33.333 0.00 0.00 0.00 1.40
3044 8853 6.184789 GGGTAATCTATTGTCCAAAACTCCA 58.815 40.000 0.00 0.00 0.00 3.86
3083 8897 9.706691 AGAAAGTACGATCAGTTTTTATCTTGA 57.293 29.630 0.00 0.00 0.00 3.02
3085 8899 9.490379 ACAGAAAGTACGATCAGTTTTTATCTT 57.510 29.630 0.00 0.00 0.00 2.40
3387 9201 1.267121 AGAACATAGTGCACGAGGGT 58.733 50.000 15.89 9.41 0.00 4.34
3600 9433 7.392494 CCTTTCTTTTAAAGGGGTCTATGAC 57.608 40.000 4.77 0.00 42.32 3.06
3619 9461 2.168496 GAGGCCTGGGTTTAACCTTTC 58.832 52.381 12.00 0.00 38.64 2.62
3707 9692 6.211184 TGCAAATATCCCAAACAAATCACTCT 59.789 34.615 0.00 0.00 0.00 3.24
3975 9985 1.546476 AGCTCACTCTTGACCTAACCG 59.454 52.381 0.00 0.00 0.00 4.44
4069 10079 8.997621 TTGTTATGTAGAATCTCTACCAACAC 57.002 34.615 19.97 10.47 46.64 3.32
4190 10223 2.719531 TACAACAGGTGGAGTTTGCA 57.280 45.000 0.00 0.00 0.00 4.08
4255 10288 5.479306 GGGATCGCAAAGCAATAGTAGATA 58.521 41.667 4.64 0.00 0.00 1.98
4387 11803 6.864685 ACATTACAACTGTCGTTCGATCTTAA 59.135 34.615 0.00 0.00 0.00 1.85
4509 11939 8.107095 AGAAGACCAGTTATTGTGGCTTTTATA 58.893 33.333 0.00 0.00 38.83 0.98
4606 12036 5.581126 TGCACATCATTTAATCCTTCCAC 57.419 39.130 0.00 0.00 0.00 4.02
4808 12244 7.502226 ACCTGATAAAAGAACACACAAATCAGA 59.498 33.333 9.86 0.00 40.86 3.27
4988 12431 2.561569 GCATGGTAGCTTATTCGGTGT 58.438 47.619 0.00 0.00 0.00 4.16
5136 12596 3.007940 GGCCAGCAAAGAATTAAAGGGTT 59.992 43.478 0.00 0.00 0.00 4.11
5138 12598 2.566724 TGGCCAGCAAAGAATTAAAGGG 59.433 45.455 0.00 0.00 0.00 3.95
5204 12667 4.314961 TGTCATGACGCTTCAGTAAATGT 58.685 39.130 20.54 0.00 34.35 2.71
5227 12706 4.661222 TCCAGGTGTTGAATGCATCTTTA 58.339 39.130 0.00 0.00 0.00 1.85
5381 12869 4.667573 AGTGCCGATCATCCTCTATTCTA 58.332 43.478 0.00 0.00 0.00 2.10
5410 12900 1.578583 GCCGACTACACAACACAACT 58.421 50.000 0.00 0.00 0.00 3.16
5509 12999 5.927689 TGCATTCCAACATTTGTCTGAATTC 59.072 36.000 0.00 0.00 30.63 2.17
5585 13075 1.611673 CCTCTGCCTCACGTGGAAAAT 60.612 52.381 17.00 0.00 0.00 1.82
5618 13112 0.955428 CCGCGCATATAAGCATGGGT 60.955 55.000 8.75 0.00 40.12 4.51
5653 14100 0.884704 TCCGAACTCAGCAAAGCACC 60.885 55.000 0.00 0.00 0.00 5.01
5677 14124 1.002857 AAGGTTGGGCTTCCTATGCT 58.997 50.000 0.00 0.00 33.27 3.79
5807 14254 9.481340 AAAAAGACAGCAATCTTATTCCTTTTC 57.519 29.630 3.17 0.00 37.99 2.29
5816 14263 7.138736 GCACTAACAAAAAGACAGCAATCTTA 58.861 34.615 3.17 0.00 37.99 2.10
5828 14277 4.754322 ACTGGGTTTGCACTAACAAAAAG 58.246 39.130 3.80 0.00 40.99 2.27
5860 14309 1.792301 GACGGAGATGTGACGACGA 59.208 57.895 0.00 0.00 0.00 4.20
5913 14362 0.961019 GCATGTCAGAAACTGGGCAA 59.039 50.000 0.00 0.00 31.51 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.