Multiple sequence alignment - TraesCS3A01G018500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G018500 chr3A 100.000 3303 0 0 1 3303 11470664 11473966 0.000000e+00 6100.0
1 TraesCS3A01G018500 chr3A 85.170 2205 204 46 971 3085 10829173 10831344 0.000000e+00 2146.0
2 TraesCS3A01G018500 chr3A 85.330 1786 194 25 896 2657 11382333 11384074 0.000000e+00 1784.0
3 TraesCS3A01G018500 chr3A 87.435 1345 151 14 938 2276 11413617 11414949 0.000000e+00 1531.0
4 TraesCS3A01G018500 chr3A 84.528 530 70 7 3 522 10827729 10828256 6.320000e-142 514.0
5 TraesCS3A01G018500 chr3A 83.213 554 64 17 2124 2657 17187832 17188376 6.410000e-132 481.0
6 TraesCS3A01G018500 chrUn 93.492 2274 136 6 1 2266 35331475 35329206 0.000000e+00 3369.0
7 TraesCS3A01G018500 chrUn 89.347 1455 134 13 938 2388 267789681 267791118 0.000000e+00 1808.0
8 TraesCS3A01G018500 chrUn 89.347 1455 134 13 938 2388 268798016 268796579 0.000000e+00 1808.0
9 TraesCS3A01G018500 chrUn 86.061 1607 198 18 786 2388 35312361 35310777 0.000000e+00 1703.0
10 TraesCS3A01G018500 chrUn 88.921 1390 131 7 1218 2596 214316730 214318107 0.000000e+00 1692.0
11 TraesCS3A01G018500 chrUn 87.921 1424 155 12 971 2388 197247360 197245948 0.000000e+00 1661.0
12 TraesCS3A01G018500 chrUn 81.442 1762 240 37 790 2506 236412576 236410857 0.000000e+00 1362.0
13 TraesCS3A01G018500 chrUn 81.385 1762 229 42 792 2508 35309315 35307608 0.000000e+00 1345.0
14 TraesCS3A01G018500 chrUn 88.189 889 84 8 1771 2647 229359063 229358184 0.000000e+00 1040.0
15 TraesCS3A01G018500 chrUn 85.283 530 66 7 3 522 34654208 34653681 1.350000e-148 536.0
16 TraesCS3A01G018500 chrUn 88.601 193 8 4 2666 2858 214321008 214321186 4.290000e-54 222.0
17 TraesCS3A01G018500 chrUn 84.577 201 25 6 326 522 197248489 197248291 9.350000e-46 195.0
18 TraesCS3A01G018500 chrUn 97.872 47 1 0 2594 2640 214319063 214319109 7.600000e-12 82.4
19 TraesCS3A01G018500 chr3D 86.465 1618 184 23 899 2508 28327813 28326223 0.000000e+00 1742.0
20 TraesCS3A01G018500 chr3D 81.170 393 60 6 5 384 5013754 5014145 1.490000e-78 303.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G018500 chr3A 11470664 11473966 3302 False 6100.000000 6100 100.000 1 3303 1 chr3A.!!$F3 3302
1 TraesCS3A01G018500 chr3A 11382333 11384074 1741 False 1784.000000 1784 85.330 896 2657 1 chr3A.!!$F1 1761
2 TraesCS3A01G018500 chr3A 11413617 11414949 1332 False 1531.000000 1531 87.435 938 2276 1 chr3A.!!$F2 1338
3 TraesCS3A01G018500 chr3A 10827729 10831344 3615 False 1330.000000 2146 84.849 3 3085 2 chr3A.!!$F5 3082
4 TraesCS3A01G018500 chr3A 17187832 17188376 544 False 481.000000 481 83.213 2124 2657 1 chr3A.!!$F4 533
5 TraesCS3A01G018500 chrUn 35329206 35331475 2269 True 3369.000000 3369 93.492 1 2266 1 chrUn.!!$R2 2265
6 TraesCS3A01G018500 chrUn 267789681 267791118 1437 False 1808.000000 1808 89.347 938 2388 1 chrUn.!!$F1 1450
7 TraesCS3A01G018500 chrUn 268796579 268798016 1437 True 1808.000000 1808 89.347 938 2388 1 chrUn.!!$R5 1450
8 TraesCS3A01G018500 chrUn 35307608 35312361 4753 True 1524.000000 1703 83.723 786 2508 2 chrUn.!!$R6 1722
9 TraesCS3A01G018500 chrUn 236410857 236412576 1719 True 1362.000000 1362 81.442 790 2506 1 chrUn.!!$R4 1716
10 TraesCS3A01G018500 chrUn 229358184 229359063 879 True 1040.000000 1040 88.189 1771 2647 1 chrUn.!!$R3 876
11 TraesCS3A01G018500 chrUn 197245948 197248489 2541 True 928.000000 1661 86.249 326 2388 2 chrUn.!!$R7 2062
12 TraesCS3A01G018500 chrUn 214316730 214321186 4456 False 665.466667 1692 91.798 1218 2858 3 chrUn.!!$F2 1640
13 TraesCS3A01G018500 chrUn 34653681 34654208 527 True 536.000000 536 85.283 3 522 1 chrUn.!!$R1 519
14 TraesCS3A01G018500 chr3D 28326223 28327813 1590 True 1742.000000 1742 86.465 899 2508 1 chr3D.!!$R1 1609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 291 0.109342 ACCTTCACTTGGCACCTCAG 59.891 55.0 0.0 0.0 0.0 3.35 F
1597 2187 0.462759 CTGAAGGAATGAGACGGGCC 60.463 60.0 0.0 0.0 0.0 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2662 0.030705 AGCTCCCATTCCTGCCTAGA 60.031 55.0 0.0 0.0 0.0 2.43 R
3048 9589 0.327924 ACAATCCCCAGTGCGATCAA 59.672 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.668401 CGACCCTGGTACGTTGTTCC 60.668 60.000 0.00 0.00 0.00 3.62
26 27 0.838608 ACCCTGGTACGTTGTTCCAA 59.161 50.000 0.00 0.00 32.87 3.53
27 28 1.202722 ACCCTGGTACGTTGTTCCAAG 60.203 52.381 0.00 0.00 32.87 3.61
42 43 5.076182 TGTTCCAAGAATTTCATACCAGCA 58.924 37.500 0.00 0.00 0.00 4.41
70 77 1.906990 TAGTATAGTCGGCCCAGCTC 58.093 55.000 0.00 0.00 0.00 4.09
83 90 1.066573 CCCAGCTCCTTGTGTCAGTAG 60.067 57.143 0.00 0.00 0.00 2.57
101 108 1.826385 AGCAACGCTAGCCAATTCTT 58.174 45.000 9.66 0.00 36.99 2.52
138 145 5.654209 AGCTTCCGCATACATATCTGATCTA 59.346 40.000 0.00 0.00 39.10 1.98
174 181 3.146847 GGCCATTTCTAAAGGTATCCCG 58.853 50.000 0.00 0.00 35.12 5.14
221 234 1.043673 CCTAACTCGGACCCCTCCAG 61.044 65.000 0.00 0.00 36.12 3.86
278 291 0.109342 ACCTTCACTTGGCACCTCAG 59.891 55.000 0.00 0.00 0.00 3.35
313 326 2.031682 GTCTGCCAACAGTGTGAACATC 60.032 50.000 0.00 0.00 44.77 3.06
390 404 8.630037 CACCATGGTATTATTTCTTTCCCTAAC 58.370 37.037 19.28 0.00 0.00 2.34
417 432 9.465199 TGAAATCCATATATCATTATGGTGTGG 57.535 33.333 9.64 0.00 45.93 4.17
418 433 9.685276 GAAATCCATATATCATTATGGTGTGGA 57.315 33.333 10.08 10.08 45.93 4.02
461 476 9.395707 GCATTATAGATTTTCTGCTTCTCAATG 57.604 33.333 0.00 0.00 31.60 2.82
585 600 9.214953 GTATTGCAAATCAGAGAAATCGTTAAG 57.785 33.333 1.71 0.00 0.00 1.85
591 606 7.440523 AATCAGAGAAATCGTTAAGTTGCTT 57.559 32.000 0.00 0.00 0.00 3.91
592 607 6.228273 TCAGAGAAATCGTTAAGTTGCTTG 57.772 37.500 0.00 0.00 0.00 4.01
735 750 3.726291 TGGGCAACAAAAAGTAAGAGC 57.274 42.857 0.00 0.00 39.74 4.09
1363 1940 5.291128 CACATCGAAACCTACAAGATACACC 59.709 44.000 0.00 0.00 0.00 4.16
1597 2187 0.462759 CTGAAGGAATGAGACGGGCC 60.463 60.000 0.00 0.00 0.00 5.80
1646 2236 8.078060 TGAGTCACTGGAGAAATACATATTCA 57.922 34.615 0.00 0.00 0.00 2.57
1694 2284 3.157087 CTCCTAGCACCCAACAAAATGT 58.843 45.455 0.00 0.00 0.00 2.71
1733 2323 1.208706 TGCCCGAGGAATGGAATACA 58.791 50.000 0.00 0.00 0.00 2.29
1744 2334 4.586001 GGAATGGAATACATGCATCAAGGT 59.414 41.667 0.00 0.00 39.46 3.50
1822 2412 7.684529 ACTACAACTTCAATCCAAAGATCTCT 58.315 34.615 0.00 0.00 0.00 3.10
1870 2460 2.159382 AGGGACCAAAGCATTGTTACG 58.841 47.619 0.43 0.00 34.60 3.18
1871 2461 1.402325 GGGACCAAAGCATTGTTACGC 60.402 52.381 0.43 0.00 34.60 4.42
1873 2463 2.414161 GGACCAAAGCATTGTTACGCTC 60.414 50.000 0.43 0.00 37.54 5.03
1888 2478 2.952293 GCTCACAGCAGCCAGAGGA 61.952 63.158 8.07 0.00 41.89 3.71
1960 2550 6.341316 GGTGTCATACAAGTCAGATGTGTAT 58.659 40.000 3.99 3.99 38.65 2.29
2025 2615 2.975489 ACTCAGACCCAAGTGTTGAGAT 59.025 45.455 6.79 0.00 0.00 2.75
2068 2658 5.453057 CCCTGAGTGGATCTATGAGAAAGTG 60.453 48.000 0.00 0.00 38.35 3.16
2071 2661 7.418827 CCTGAGTGGATCTATGAGAAAGTGATT 60.419 40.741 0.00 0.00 38.35 2.57
2072 2662 7.855375 TGAGTGGATCTATGAGAAAGTGATTT 58.145 34.615 0.00 0.00 0.00 2.17
2075 2665 9.206690 AGTGGATCTATGAGAAAGTGATTTCTA 57.793 33.333 3.36 0.00 41.02 2.10
2096 2686 1.475930 GGCAGGAATGGGAGCTTACTC 60.476 57.143 0.00 0.00 42.66 2.59
2122 2712 5.429957 AAATGACAGCAGAAGACAAAGAC 57.570 39.130 0.00 0.00 0.00 3.01
2149 2739 1.556911 AGACAGCTGAGTATTGTGGGG 59.443 52.381 23.35 0.00 0.00 4.96
2180 2777 4.599041 CATCCAGTGGAACCCAAAGAATA 58.401 43.478 17.71 0.00 37.80 1.75
2185 2782 1.340600 TGGAACCCAAAGAATAGGCCG 60.341 52.381 0.00 0.00 0.00 6.13
2188 2785 0.107848 ACCCAAAGAATAGGCCGTCG 60.108 55.000 0.00 0.00 0.00 5.12
2516 6169 2.901839 ACTGGATTTTGCAGCCATTTCT 59.098 40.909 0.00 0.00 39.63 2.52
2577 6239 4.887071 TGATGTGATTTTATCCCCTTTCCG 59.113 41.667 0.00 0.00 0.00 4.30
2584 6246 2.943036 TATCCCCTTTCCGCCATAAC 57.057 50.000 0.00 0.00 0.00 1.89
2657 9121 9.500785 GGCTGCTTATATTCTAGAAAAAGAGAT 57.499 33.333 20.99 4.37 0.00 2.75
2687 9187 4.899352 ACTGGTAGAAACTCAGCATTCT 57.101 40.909 0.00 0.00 39.19 2.40
2705 9207 5.920273 GCATTCTTGTTCGGAAATCAAAAGA 59.080 36.000 0.00 0.00 0.00 2.52
2736 9238 2.565841 GGATTACTCACCATGGCAGAC 58.434 52.381 13.04 0.00 0.00 3.51
2756 9258 3.839432 CTTCCGCCGGAGTCCCTC 61.839 72.222 5.05 0.00 31.21 4.30
2812 9314 1.153127 CGGAGTAGGACGAGGAGCT 60.153 63.158 0.00 0.00 0.00 4.09
2813 9315 1.161563 CGGAGTAGGACGAGGAGCTC 61.162 65.000 4.71 4.71 0.00 4.09
2842 9344 0.459585 GCGGAGAATGTGAGCGGTAA 60.460 55.000 0.00 0.00 0.00 2.85
2905 9435 0.107848 CCGCCTAGGGTACAAACTGG 60.108 60.000 11.72 0.00 35.97 4.00
2914 9444 0.589708 GTACAAACTGGCACCCGTTC 59.410 55.000 0.00 0.00 0.00 3.95
2965 9495 7.900782 TTTTGTTTTTGGACAAACGGATAAA 57.099 28.000 2.94 0.00 46.04 1.40
2973 9503 5.856156 TGGACAAACGGATAAACAAGAGTA 58.144 37.500 0.00 0.00 0.00 2.59
2975 9505 5.350640 GGACAAACGGATAAACAAGAGTAGG 59.649 44.000 0.00 0.00 0.00 3.18
2982 9512 4.640647 GGATAAACAAGAGTAGGGCCTTTG 59.359 45.833 13.45 13.15 0.00 2.77
2983 9513 3.595190 AAACAAGAGTAGGGCCTTTGT 57.405 42.857 13.45 13.91 0.00 2.83
2984 9514 3.595190 AACAAGAGTAGGGCCTTTGTT 57.405 42.857 22.40 22.40 0.00 2.83
2986 9516 2.162681 CAAGAGTAGGGCCTTTGTTGG 58.837 52.381 13.45 0.00 0.00 3.77
2994 9524 4.994756 CCTTTGTTGGGCCGCCCT 62.995 66.667 28.97 0.00 45.70 5.19
2995 9525 3.683937 CTTTGTTGGGCCGCCCTG 61.684 66.667 28.97 8.57 45.70 4.45
2996 9526 4.531426 TTTGTTGGGCCGCCCTGT 62.531 61.111 28.97 0.00 45.70 4.00
3015 9556 4.154296 GGCTGACCCATCTCATGC 57.846 61.111 0.00 0.00 0.00 4.06
3016 9557 1.530771 GGCTGACCCATCTCATGCT 59.469 57.895 0.00 0.00 0.00 3.79
3031 9572 7.413988 CCATCTCATGCTAACAAACAATACGAA 60.414 37.037 0.00 0.00 0.00 3.85
3041 9582 6.627395 ACAAACAATACGAAGAATTGGTCA 57.373 33.333 0.00 0.00 38.29 4.02
3048 9589 8.576442 ACAATACGAAGAATTGGTCAGAAATTT 58.424 29.630 0.00 0.00 38.29 1.82
3049 9590 9.410556 CAATACGAAGAATTGGTCAGAAATTTT 57.589 29.630 0.00 0.00 38.29 1.82
3050 9591 8.970691 ATACGAAGAATTGGTCAGAAATTTTG 57.029 30.769 0.00 0.00 38.29 2.44
3051 9592 7.038154 ACGAAGAATTGGTCAGAAATTTTGA 57.962 32.000 0.00 0.00 27.75 2.69
3052 9593 7.661040 ACGAAGAATTGGTCAGAAATTTTGAT 58.339 30.769 0.00 0.00 27.75 2.57
3054 9595 7.007725 CGAAGAATTGGTCAGAAATTTTGATCG 59.992 37.037 0.00 0.00 0.00 3.69
3056 9597 4.844998 TTGGTCAGAAATTTTGATCGCA 57.155 36.364 0.00 0.00 0.00 5.10
3057 9598 4.159377 TGGTCAGAAATTTTGATCGCAC 57.841 40.909 0.00 0.00 0.00 5.34
3058 9599 3.820467 TGGTCAGAAATTTTGATCGCACT 59.180 39.130 0.00 0.00 0.00 4.40
3059 9600 4.161333 GGTCAGAAATTTTGATCGCACTG 58.839 43.478 0.00 0.00 0.00 3.66
3092 9633 4.445699 CCCTGTCGGCAGCTATTC 57.554 61.111 12.68 0.00 41.26 1.75
3093 9634 1.592669 CCCTGTCGGCAGCTATTCG 60.593 63.158 12.68 0.00 41.26 3.34
3094 9635 1.141881 CCTGTCGGCAGCTATTCGT 59.858 57.895 12.68 0.00 41.26 3.85
3095 9636 0.460284 CCTGTCGGCAGCTATTCGTT 60.460 55.000 12.68 0.00 41.26 3.85
3096 9637 1.359848 CTGTCGGCAGCTATTCGTTT 58.640 50.000 3.01 0.00 35.77 3.60
3097 9638 1.732259 CTGTCGGCAGCTATTCGTTTT 59.268 47.619 3.01 0.00 35.77 2.43
3098 9639 1.730064 TGTCGGCAGCTATTCGTTTTC 59.270 47.619 0.00 0.00 0.00 2.29
3099 9640 1.730064 GTCGGCAGCTATTCGTTTTCA 59.270 47.619 0.00 0.00 0.00 2.69
3100 9641 2.158841 GTCGGCAGCTATTCGTTTTCAA 59.841 45.455 0.00 0.00 0.00 2.69
3101 9642 2.809119 TCGGCAGCTATTCGTTTTCAAA 59.191 40.909 0.00 0.00 0.00 2.69
3102 9643 3.251245 TCGGCAGCTATTCGTTTTCAAAA 59.749 39.130 0.00 0.00 0.00 2.44
3103 9644 4.083003 TCGGCAGCTATTCGTTTTCAAAAT 60.083 37.500 0.00 0.00 0.00 1.82
3104 9645 4.621034 CGGCAGCTATTCGTTTTCAAAATT 59.379 37.500 0.00 0.00 0.00 1.82
3105 9646 5.118510 CGGCAGCTATTCGTTTTCAAAATTT 59.881 36.000 0.00 0.00 0.00 1.82
3106 9647 6.306837 CGGCAGCTATTCGTTTTCAAAATTTA 59.693 34.615 0.00 0.00 0.00 1.40
3107 9648 7.009174 CGGCAGCTATTCGTTTTCAAAATTTAT 59.991 33.333 0.00 0.00 0.00 1.40
3108 9649 9.296400 GGCAGCTATTCGTTTTCAAAATTTATA 57.704 29.630 0.00 0.00 0.00 0.98
3139 9680 9.914923 GTTCGCAAAAAGAACTATTCAATTTTT 57.085 25.926 2.25 0.00 43.24 1.94
3162 9703 8.624367 TTTTTCCTCCACACGATTCTATAAAA 57.376 30.769 0.00 0.00 0.00 1.52
3163 9704 8.624367 TTTTCCTCCACACGATTCTATAAAAA 57.376 30.769 0.00 0.00 0.00 1.94
3184 9725 4.882842 AAAATTGGGTTCCACCATGTAC 57.117 40.909 0.00 0.00 41.02 2.90
3185 9726 2.122783 ATTGGGTTCCACCATGTACG 57.877 50.000 0.00 0.00 41.02 3.67
3186 9727 1.057471 TTGGGTTCCACCATGTACGA 58.943 50.000 0.00 0.00 41.02 3.43
3187 9728 1.057471 TGGGTTCCACCATGTACGAA 58.943 50.000 0.00 0.00 41.02 3.85
3188 9729 1.270947 TGGGTTCCACCATGTACGAAC 60.271 52.381 0.00 7.24 41.02 3.95
3189 9730 1.270947 GGGTTCCACCATGTACGAACA 60.271 52.381 14.37 0.00 41.02 3.18
3190 9731 2.496111 GGTTCCACCATGTACGAACAA 58.504 47.619 14.37 0.00 39.58 2.83
3191 9732 2.879646 GGTTCCACCATGTACGAACAAA 59.120 45.455 14.37 0.00 39.58 2.83
3192 9733 3.315749 GGTTCCACCATGTACGAACAAAA 59.684 43.478 14.37 0.00 39.58 2.44
3193 9734 4.202030 GGTTCCACCATGTACGAACAAAAA 60.202 41.667 14.37 0.00 39.58 1.94
3194 9735 4.822036 TCCACCATGTACGAACAAAAAG 57.178 40.909 0.00 0.00 39.58 2.27
3195 9736 3.566322 TCCACCATGTACGAACAAAAAGG 59.434 43.478 0.00 0.00 39.58 3.11
3196 9737 3.316868 CCACCATGTACGAACAAAAAGGT 59.683 43.478 0.00 0.00 39.58 3.50
3197 9738 4.515944 CCACCATGTACGAACAAAAAGGTA 59.484 41.667 0.00 0.00 39.58 3.08
3198 9739 5.008811 CCACCATGTACGAACAAAAAGGTAA 59.991 40.000 0.00 0.00 39.58 2.85
3199 9740 6.459848 CCACCATGTACGAACAAAAAGGTAAA 60.460 38.462 0.00 0.00 39.58 2.01
3200 9741 6.973474 CACCATGTACGAACAAAAAGGTAAAA 59.027 34.615 0.00 0.00 39.58 1.52
3201 9742 7.650104 CACCATGTACGAACAAAAAGGTAAAAT 59.350 33.333 0.00 0.00 39.58 1.82
3202 9743 8.848182 ACCATGTACGAACAAAAAGGTAAAATA 58.152 29.630 0.00 0.00 39.58 1.40
3203 9744 9.680315 CCATGTACGAACAAAAAGGTAAAATAA 57.320 29.630 0.00 0.00 39.58 1.40
3244 9785 9.392506 TCTTTTCTTCCATATATGATCCCTACA 57.607 33.333 14.54 0.00 0.00 2.74
3252 9793 9.797732 TCCATATATGATCCCTACAAAATAGGA 57.202 33.333 14.54 0.00 36.85 2.94
3257 9798 6.840090 TGATCCCTACAAAATAGGATTCCA 57.160 37.500 5.29 0.00 39.24 3.53
3258 9799 6.601332 TGATCCCTACAAAATAGGATTCCAC 58.399 40.000 5.29 0.00 39.24 4.02
3259 9800 6.159575 TGATCCCTACAAAATAGGATTCCACA 59.840 38.462 5.29 0.00 39.24 4.17
3260 9801 6.395780 TCCCTACAAAATAGGATTCCACAA 57.604 37.500 5.29 0.00 36.85 3.33
3261 9802 6.980577 TCCCTACAAAATAGGATTCCACAAT 58.019 36.000 5.29 0.00 36.85 2.71
3262 9803 7.060421 TCCCTACAAAATAGGATTCCACAATC 58.940 38.462 5.29 0.00 38.19 2.67
3263 9804 6.833416 CCCTACAAAATAGGATTCCACAATCA 59.167 38.462 5.29 0.00 40.41 2.57
3264 9805 7.341769 CCCTACAAAATAGGATTCCACAATCAA 59.658 37.037 5.29 0.00 40.41 2.57
3265 9806 8.748412 CCTACAAAATAGGATTCCACAATCAAA 58.252 33.333 5.29 0.00 40.41 2.69
3268 9809 8.869109 ACAAAATAGGATTCCACAATCAAAAGA 58.131 29.630 5.29 0.00 40.41 2.52
3269 9810 9.143631 CAAAATAGGATTCCACAATCAAAAGAC 57.856 33.333 5.29 0.00 40.41 3.01
3270 9811 8.421249 AAATAGGATTCCACAATCAAAAGACA 57.579 30.769 5.29 0.00 40.41 3.41
3271 9812 8.421249 AATAGGATTCCACAATCAAAAGACAA 57.579 30.769 5.29 0.00 40.41 3.18
3272 9813 6.089249 AGGATTCCACAATCAAAAGACAAC 57.911 37.500 5.29 0.00 40.41 3.32
3273 9814 4.917415 GGATTCCACAATCAAAAGACAACG 59.083 41.667 0.00 0.00 40.41 4.10
3274 9815 3.980646 TCCACAATCAAAAGACAACGG 57.019 42.857 0.00 0.00 0.00 4.44
3275 9816 3.546724 TCCACAATCAAAAGACAACGGA 58.453 40.909 0.00 0.00 0.00 4.69
3276 9817 3.948473 TCCACAATCAAAAGACAACGGAA 59.052 39.130 0.00 0.00 0.00 4.30
3277 9818 4.041723 CCACAATCAAAAGACAACGGAAC 58.958 43.478 0.00 0.00 0.00 3.62
3278 9819 4.439426 CCACAATCAAAAGACAACGGAACA 60.439 41.667 0.00 0.00 0.00 3.18
3279 9820 5.098893 CACAATCAAAAGACAACGGAACAA 58.901 37.500 0.00 0.00 0.00 2.83
3280 9821 5.574830 CACAATCAAAAGACAACGGAACAAA 59.425 36.000 0.00 0.00 0.00 2.83
3281 9822 6.090088 CACAATCAAAAGACAACGGAACAAAA 59.910 34.615 0.00 0.00 0.00 2.44
3282 9823 6.310224 ACAATCAAAAGACAACGGAACAAAAG 59.690 34.615 0.00 0.00 0.00 2.27
3283 9824 4.739195 TCAAAAGACAACGGAACAAAAGG 58.261 39.130 0.00 0.00 0.00 3.11
3284 9825 4.218852 TCAAAAGACAACGGAACAAAAGGT 59.781 37.500 0.00 0.00 0.00 3.50
3285 9826 4.365899 AAAGACAACGGAACAAAAGGTC 57.634 40.909 0.00 0.00 0.00 3.85
3286 9827 2.993937 AGACAACGGAACAAAAGGTCA 58.006 42.857 0.00 0.00 0.00 4.02
3287 9828 3.349022 AGACAACGGAACAAAAGGTCAA 58.651 40.909 0.00 0.00 0.00 3.18
3288 9829 3.759618 AGACAACGGAACAAAAGGTCAAA 59.240 39.130 0.00 0.00 0.00 2.69
3289 9830 4.401202 AGACAACGGAACAAAAGGTCAAAT 59.599 37.500 0.00 0.00 0.00 2.32
3290 9831 5.079689 ACAACGGAACAAAAGGTCAAATT 57.920 34.783 0.00 0.00 0.00 1.82
3291 9832 5.483811 ACAACGGAACAAAAGGTCAAATTT 58.516 33.333 0.00 0.00 0.00 1.82
3292 9833 5.350091 ACAACGGAACAAAAGGTCAAATTTG 59.650 36.000 12.15 12.15 41.24 2.32
3293 9834 5.331876 ACGGAACAAAAGGTCAAATTTGA 57.668 34.783 16.91 16.91 38.50 2.69
3294 9835 5.348164 ACGGAACAAAAGGTCAAATTTGAG 58.652 37.500 21.05 10.73 38.50 3.02
3295 9836 5.126384 ACGGAACAAAAGGTCAAATTTGAGA 59.874 36.000 21.05 0.00 38.50 3.27
3296 9837 5.458779 CGGAACAAAAGGTCAAATTTGAGAC 59.541 40.000 21.05 16.22 38.50 3.36
3297 9838 5.458779 GGAACAAAAGGTCAAATTTGAGACG 59.541 40.000 21.05 9.21 38.50 4.18
3298 9839 5.828299 ACAAAAGGTCAAATTTGAGACGA 57.172 34.783 21.05 0.00 38.50 4.20
3299 9840 6.202516 ACAAAAGGTCAAATTTGAGACGAA 57.797 33.333 21.05 0.00 38.50 3.85
3300 9841 6.626302 ACAAAAGGTCAAATTTGAGACGAAA 58.374 32.000 21.05 0.00 38.50 3.46
3301 9842 7.093992 ACAAAAGGTCAAATTTGAGACGAAAA 58.906 30.769 21.05 0.00 38.50 2.29
3302 9843 7.763985 ACAAAAGGTCAAATTTGAGACGAAAAT 59.236 29.630 21.05 1.78 38.50 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.591472 TGGATCTGCTGGTATGAAATTCTTG 59.409 40.000 0.00 0.00 0.00 3.02
26 27 5.378230 TGGATCTGCTGGTATGAAATTCT 57.622 39.130 0.00 0.00 0.00 2.40
27 28 7.934855 ATATGGATCTGCTGGTATGAAATTC 57.065 36.000 0.00 0.00 0.00 2.17
42 43 5.103643 TGGGCCGACTATACTATATGGATCT 60.104 44.000 0.00 0.00 0.00 2.75
70 77 0.512952 GCGTTGCTACTGACACAAGG 59.487 55.000 0.00 0.00 33.51 3.61
83 90 1.900237 CAAGAATTGGCTAGCGTTGC 58.100 50.000 9.00 0.00 43.94 4.17
138 145 2.436109 GCCACACAGTCCCATGGT 59.564 61.111 11.73 0.00 34.50 3.55
174 181 7.335422 CCATGTTTATCATAGCTGAAGGGTATC 59.665 40.741 0.00 0.00 36.60 2.24
221 234 2.484264 ACGACTGCCTTTGCTATTTCAC 59.516 45.455 0.00 0.00 38.71 3.18
313 326 4.115516 CTGAATCCACAGTATCGACCTTG 58.884 47.826 0.00 0.00 33.73 3.61
428 443 8.517062 AGCAGAAAATCTATAATGCTGTTCTT 57.483 30.769 0.00 0.00 42.11 2.52
429 444 8.517062 AAGCAGAAAATCTATAATGCTGTTCT 57.483 30.769 0.00 0.00 42.83 3.01
501 516 7.596749 TGAGAATTCTGTCGGAAGATTAAAC 57.403 36.000 14.00 0.00 45.19 2.01
550 565 9.545105 TTCTCTGATTTGCAATACAATTTTGTT 57.455 25.926 0.00 0.00 42.35 2.83
565 580 7.301054 AGCAACTTAACGATTTCTCTGATTTG 58.699 34.615 0.00 0.00 0.00 2.32
591 606 3.969553 ACCTAGAGACTGTATGTGCTCA 58.030 45.455 0.00 0.00 0.00 4.26
592 607 4.399618 TGAACCTAGAGACTGTATGTGCTC 59.600 45.833 0.00 0.00 0.00 4.26
850 1375 4.202223 GGCTTCAAGTATATTGGACCTCGA 60.202 45.833 0.00 0.00 0.00 4.04
851 1376 4.058817 GGCTTCAAGTATATTGGACCTCG 58.941 47.826 0.00 0.00 0.00 4.63
1363 1940 6.586344 TGCTATCTTCTTAACATCAGGGAAG 58.414 40.000 0.00 0.00 35.93 3.46
1646 2236 8.771920 TGTCGAGAAATATTAGAAACATGTGT 57.228 30.769 0.00 0.00 0.00 3.72
1744 2334 2.555123 GAGAATCCGCTGGTTGCAA 58.445 52.632 0.00 0.00 43.06 4.08
1870 2460 2.436292 CCTCTGGCTGCTGTGAGC 60.436 66.667 0.00 0.00 42.82 4.26
1871 2461 0.673022 GTTCCTCTGGCTGCTGTGAG 60.673 60.000 0.00 5.00 0.00 3.51
1873 2463 0.610174 TAGTTCCTCTGGCTGCTGTG 59.390 55.000 0.00 0.00 0.00 3.66
1888 2478 2.288825 CGGTGCGATGTATCCCATAGTT 60.289 50.000 0.00 0.00 32.56 2.24
1960 2550 1.993956 ACACCAGCATGCCAAAACTA 58.006 45.000 15.66 0.00 31.97 2.24
2047 2637 7.429374 AATCACTTTCTCATAGATCCACTCA 57.571 36.000 0.00 0.00 0.00 3.41
2068 2658 3.749226 CTCCCATTCCTGCCTAGAAATC 58.251 50.000 0.00 0.00 0.00 2.17
2071 2661 0.839946 GCTCCCATTCCTGCCTAGAA 59.160 55.000 0.00 0.00 0.00 2.10
2072 2662 0.030705 AGCTCCCATTCCTGCCTAGA 60.031 55.000 0.00 0.00 0.00 2.43
2075 2665 0.548510 GTAAGCTCCCATTCCTGCCT 59.451 55.000 0.00 0.00 0.00 4.75
2096 2686 3.405831 TGTCTTCTGCTGTCATTTCCAG 58.594 45.455 0.00 0.00 0.00 3.86
2122 2712 6.257411 CCACAATACTCAGCTGTCTAATCTTG 59.743 42.308 14.67 11.44 0.00 3.02
2149 2739 2.338015 CCACTGGATGCACCACAGC 61.338 63.158 12.50 0.00 44.64 4.40
2185 2782 2.642139 TTACCACCTTCGTCATCGAC 57.358 50.000 0.00 0.00 46.03 4.20
2188 2785 4.000988 ACATGTTTACCACCTTCGTCATC 58.999 43.478 0.00 0.00 0.00 2.92
2341 2941 1.757118 TGCGAGATAAGTTCCCTCAGG 59.243 52.381 0.00 0.00 0.00 3.86
2516 6169 6.712179 TTCATATTATCACAGCATTGCCAA 57.288 33.333 4.70 0.00 0.00 4.52
2577 6239 4.950050 ACAGCAGTACTATCAGTTATGGC 58.050 43.478 0.00 0.00 0.00 4.40
2584 6246 5.766150 AGAGCTTACAGCAGTACTATCAG 57.234 43.478 0.00 0.00 45.56 2.90
2657 9121 7.449395 TGCTGAGTTTCTACCAGTAGTAAGTAA 59.551 37.037 4.81 0.00 34.84 2.24
2658 9122 6.944290 TGCTGAGTTTCTACCAGTAGTAAGTA 59.056 38.462 4.81 0.00 34.84 2.24
2660 9124 6.268825 TGCTGAGTTTCTACCAGTAGTAAG 57.731 41.667 4.81 0.00 34.84 2.34
2661 9125 6.852420 ATGCTGAGTTTCTACCAGTAGTAA 57.148 37.500 4.81 0.00 34.84 2.24
2662 9126 6.663953 AGAATGCTGAGTTTCTACCAGTAGTA 59.336 38.462 4.81 0.00 34.84 1.82
2664 9128 5.971763 AGAATGCTGAGTTTCTACCAGTAG 58.028 41.667 0.00 0.00 30.56 2.57
2669 9169 5.389935 CGAACAAGAATGCTGAGTTTCTACC 60.390 44.000 1.25 0.00 32.05 3.18
2687 9187 5.067153 TGCTCTTCTTTTGATTTCCGAACAA 59.933 36.000 0.00 0.00 0.00 2.83
2705 9207 3.308473 GGTGAGTAATCCCCTTTGCTCTT 60.308 47.826 4.39 0.00 38.63 2.85
2760 9262 4.593864 GCGTCTCATCGGGGCTCC 62.594 72.222 0.00 0.00 0.00 4.70
2761 9263 4.933064 CGCGTCTCATCGGGGCTC 62.933 72.222 0.00 0.00 39.47 4.70
2763 9265 4.933064 CTCGCGTCTCATCGGGGC 62.933 72.222 5.77 0.00 42.48 5.80
2764 9266 4.933064 GCTCGCGTCTCATCGGGG 62.933 72.222 5.77 0.00 42.48 5.73
2766 9268 4.237809 TCGCTCGCGTCTCATCGG 62.238 66.667 5.77 0.00 40.74 4.18
2767 9269 2.720392 CTCGCTCGCGTCTCATCG 60.720 66.667 5.77 2.12 40.74 3.84
2768 9270 2.352915 CCTCGCTCGCGTCTCATC 60.353 66.667 5.77 0.00 40.74 2.92
2769 9271 4.560856 GCCTCGCTCGCGTCTCAT 62.561 66.667 5.77 0.00 40.74 2.90
2842 9344 3.753434 CAGTCGAGCTCGCCCAGT 61.753 66.667 30.97 14.35 39.60 4.00
2884 9414 0.908180 AGTTTGTACCCTAGGCGGCT 60.908 55.000 18.33 18.33 0.00 5.52
2905 9435 2.645192 CCAAATGGGGAACGGGTGC 61.645 63.158 0.00 0.00 0.00 5.01
2914 9444 3.981212 ACTCTGGTTTATCCAAATGGGG 58.019 45.455 0.00 0.00 46.59 4.96
2945 9475 6.752815 TCTTGTTTATCCGTTTGTCCAAAAAC 59.247 34.615 0.00 0.00 36.81 2.43
2946 9476 6.864342 TCTTGTTTATCCGTTTGTCCAAAAA 58.136 32.000 0.00 0.00 31.33 1.94
2948 9478 5.591067 ACTCTTGTTTATCCGTTTGTCCAAA 59.409 36.000 0.00 0.00 0.00 3.28
2949 9479 5.127491 ACTCTTGTTTATCCGTTTGTCCAA 58.873 37.500 0.00 0.00 0.00 3.53
2950 9480 4.710324 ACTCTTGTTTATCCGTTTGTCCA 58.290 39.130 0.00 0.00 0.00 4.02
2951 9481 5.350640 CCTACTCTTGTTTATCCGTTTGTCC 59.649 44.000 0.00 0.00 0.00 4.02
2954 9484 4.094442 GCCCTACTCTTGTTTATCCGTTTG 59.906 45.833 0.00 0.00 0.00 2.93
2958 9488 2.434702 AGGCCCTACTCTTGTTTATCCG 59.565 50.000 0.00 0.00 0.00 4.18
2965 9495 2.489073 CCAACAAAGGCCCTACTCTTGT 60.489 50.000 0.00 0.00 0.00 3.16
2999 9529 2.216898 GTTAGCATGAGATGGGTCAGC 58.783 52.381 0.00 0.00 0.00 4.26
3002 9532 4.009675 TGTTTGTTAGCATGAGATGGGTC 58.990 43.478 0.00 0.00 0.00 4.46
3003 9533 4.032960 TGTTTGTTAGCATGAGATGGGT 57.967 40.909 0.00 0.00 0.00 4.51
3005 9535 6.037062 TCGTATTGTTTGTTAGCATGAGATGG 59.963 38.462 0.00 0.00 0.00 3.51
3006 9536 7.003939 TCGTATTGTTTGTTAGCATGAGATG 57.996 36.000 0.00 0.00 0.00 2.90
3007 9537 7.549134 TCTTCGTATTGTTTGTTAGCATGAGAT 59.451 33.333 0.00 0.00 0.00 2.75
3008 9538 6.871492 TCTTCGTATTGTTTGTTAGCATGAGA 59.129 34.615 0.00 0.00 0.00 3.27
3009 9539 7.060600 TCTTCGTATTGTTTGTTAGCATGAG 57.939 36.000 0.00 0.00 0.00 2.90
3010 9540 7.428282 TTCTTCGTATTGTTTGTTAGCATGA 57.572 32.000 0.00 0.00 0.00 3.07
3015 9556 8.286800 TGACCAATTCTTCGTATTGTTTGTTAG 58.713 33.333 0.00 0.00 32.38 2.34
3016 9557 8.155821 TGACCAATTCTTCGTATTGTTTGTTA 57.844 30.769 0.00 0.00 32.38 2.41
3031 9572 6.095377 GCGATCAAAATTTCTGACCAATTCT 58.905 36.000 0.00 0.00 0.00 2.40
3041 9582 2.493278 CCCCAGTGCGATCAAAATTTCT 59.507 45.455 0.00 0.00 0.00 2.52
3048 9589 0.327924 ACAATCCCCAGTGCGATCAA 59.672 50.000 0.00 0.00 0.00 2.57
3049 9590 0.327924 AACAATCCCCAGTGCGATCA 59.672 50.000 0.00 0.00 0.00 2.92
3050 9591 0.734889 CAACAATCCCCAGTGCGATC 59.265 55.000 0.00 0.00 0.00 3.69
3051 9592 0.680921 CCAACAATCCCCAGTGCGAT 60.681 55.000 0.00 0.00 0.00 4.58
3052 9593 1.303236 CCAACAATCCCCAGTGCGA 60.303 57.895 0.00 0.00 0.00 5.10
3054 9595 2.649129 GCCCAACAATCCCCAGTGC 61.649 63.158 0.00 0.00 0.00 4.40
3056 9597 2.445155 GGCCCAACAATCCCCAGT 59.555 61.111 0.00 0.00 0.00 4.00
3057 9598 2.755469 CGGCCCAACAATCCCCAG 60.755 66.667 0.00 0.00 0.00 4.45
3076 9617 0.460284 AACGAATAGCTGCCGACAGG 60.460 55.000 0.00 0.00 44.63 4.00
3113 9654 9.914923 AAAAATTGAATAGTTCTTTTTGCGAAC 57.085 25.926 0.00 0.00 40.72 3.95
3137 9678 8.624367 TTTTATAGAATCGTGTGGAGGAAAAA 57.376 30.769 0.00 0.00 0.00 1.94
3138 9679 8.624367 TTTTTATAGAATCGTGTGGAGGAAAA 57.376 30.769 0.00 0.00 0.00 2.29
3171 9712 4.555348 TTTTGTTCGTACATGGTGGAAC 57.445 40.909 14.43 14.43 39.29 3.62
3172 9713 4.036971 CCTTTTTGTTCGTACATGGTGGAA 59.963 41.667 0.00 0.00 33.44 3.53
3173 9714 3.566322 CCTTTTTGTTCGTACATGGTGGA 59.434 43.478 0.00 0.00 33.44 4.02
3174 9715 3.316868 ACCTTTTTGTTCGTACATGGTGG 59.683 43.478 0.00 0.15 33.44 4.61
3175 9716 4.561735 ACCTTTTTGTTCGTACATGGTG 57.438 40.909 0.00 0.00 33.44 4.17
3176 9717 6.696441 TTTACCTTTTTGTTCGTACATGGT 57.304 33.333 0.00 5.51 33.44 3.55
3177 9718 9.680315 TTATTTTACCTTTTTGTTCGTACATGG 57.320 29.630 0.00 0.00 33.44 3.66
3218 9759 9.392506 TGTAGGGATCATATATGGAAGAAAAGA 57.607 33.333 12.78 0.00 0.00 2.52
3226 9767 9.797732 TCCTATTTTGTAGGGATCATATATGGA 57.202 33.333 12.78 0.57 35.45 3.41
3231 9772 9.127560 TGGAATCCTATTTTGTAGGGATCATAT 57.872 33.333 0.00 0.00 37.57 1.78
3232 9773 8.383175 GTGGAATCCTATTTTGTAGGGATCATA 58.617 37.037 0.00 0.00 37.57 2.15
3233 9774 7.147141 TGTGGAATCCTATTTTGTAGGGATCAT 60.147 37.037 0.00 0.00 37.57 2.45
3234 9775 6.159575 TGTGGAATCCTATTTTGTAGGGATCA 59.840 38.462 0.00 0.00 37.57 2.92
3235 9776 6.601332 TGTGGAATCCTATTTTGTAGGGATC 58.399 40.000 0.00 0.00 37.57 3.36
3236 9777 6.590656 TGTGGAATCCTATTTTGTAGGGAT 57.409 37.500 0.00 0.00 39.91 3.85
3237 9778 6.395780 TTGTGGAATCCTATTTTGTAGGGA 57.604 37.500 0.00 0.00 35.45 4.20
3238 9779 6.833416 TGATTGTGGAATCCTATTTTGTAGGG 59.167 38.462 0.00 0.00 37.74 3.53
3239 9780 7.880160 TGATTGTGGAATCCTATTTTGTAGG 57.120 36.000 0.00 0.00 37.74 3.18
3242 9783 8.869109 TCTTTTGATTGTGGAATCCTATTTTGT 58.131 29.630 0.00 0.00 37.74 2.83
3243 9784 9.143631 GTCTTTTGATTGTGGAATCCTATTTTG 57.856 33.333 0.00 0.00 37.74 2.44
3244 9785 8.869109 TGTCTTTTGATTGTGGAATCCTATTTT 58.131 29.630 0.00 0.00 37.74 1.82
3245 9786 8.421249 TGTCTTTTGATTGTGGAATCCTATTT 57.579 30.769 0.00 0.00 37.74 1.40
3246 9787 8.306761 GTTGTCTTTTGATTGTGGAATCCTATT 58.693 33.333 0.00 0.00 37.74 1.73
3247 9788 7.362056 CGTTGTCTTTTGATTGTGGAATCCTAT 60.362 37.037 0.00 0.00 37.74 2.57
3248 9789 6.072728 CGTTGTCTTTTGATTGTGGAATCCTA 60.073 38.462 0.00 0.00 37.74 2.94
3249 9790 5.278463 CGTTGTCTTTTGATTGTGGAATCCT 60.278 40.000 0.00 0.00 37.74 3.24
3250 9791 4.917415 CGTTGTCTTTTGATTGTGGAATCC 59.083 41.667 0.00 0.00 37.74 3.01
3251 9792 4.917415 CCGTTGTCTTTTGATTGTGGAATC 59.083 41.667 0.00 0.00 38.85 2.52
3252 9793 4.582656 TCCGTTGTCTTTTGATTGTGGAAT 59.417 37.500 0.00 0.00 0.00 3.01
3253 9794 3.948473 TCCGTTGTCTTTTGATTGTGGAA 59.052 39.130 0.00 0.00 0.00 3.53
3254 9795 3.546724 TCCGTTGTCTTTTGATTGTGGA 58.453 40.909 0.00 0.00 0.00 4.02
3255 9796 3.980646 TCCGTTGTCTTTTGATTGTGG 57.019 42.857 0.00 0.00 0.00 4.17
3256 9797 4.667262 TGTTCCGTTGTCTTTTGATTGTG 58.333 39.130 0.00 0.00 0.00 3.33
3257 9798 4.974368 TGTTCCGTTGTCTTTTGATTGT 57.026 36.364 0.00 0.00 0.00 2.71
3258 9799 6.237808 CCTTTTGTTCCGTTGTCTTTTGATTG 60.238 38.462 0.00 0.00 0.00 2.67
3259 9800 5.810074 CCTTTTGTTCCGTTGTCTTTTGATT 59.190 36.000 0.00 0.00 0.00 2.57
3260 9801 5.105513 ACCTTTTGTTCCGTTGTCTTTTGAT 60.106 36.000 0.00 0.00 0.00 2.57
3261 9802 4.218852 ACCTTTTGTTCCGTTGTCTTTTGA 59.781 37.500 0.00 0.00 0.00 2.69
3262 9803 4.490743 ACCTTTTGTTCCGTTGTCTTTTG 58.509 39.130 0.00 0.00 0.00 2.44
3263 9804 4.218852 TGACCTTTTGTTCCGTTGTCTTTT 59.781 37.500 0.00 0.00 0.00 2.27
3264 9805 3.759618 TGACCTTTTGTTCCGTTGTCTTT 59.240 39.130 0.00 0.00 0.00 2.52
3265 9806 3.349022 TGACCTTTTGTTCCGTTGTCTT 58.651 40.909 0.00 0.00 0.00 3.01
3266 9807 2.993937 TGACCTTTTGTTCCGTTGTCT 58.006 42.857 0.00 0.00 0.00 3.41
3267 9808 3.768468 TTGACCTTTTGTTCCGTTGTC 57.232 42.857 0.00 0.00 0.00 3.18
3268 9809 4.729227 ATTTGACCTTTTGTTCCGTTGT 57.271 36.364 0.00 0.00 0.00 3.32
3269 9810 5.578727 TCAAATTTGACCTTTTGTTCCGTTG 59.421 36.000 16.91 0.00 35.01 4.10
3270 9811 5.725362 TCAAATTTGACCTTTTGTTCCGTT 58.275 33.333 16.91 0.00 35.01 4.44
3271 9812 5.126384 TCTCAAATTTGACCTTTTGTTCCGT 59.874 36.000 16.91 0.00 35.01 4.69
3272 9813 5.458779 GTCTCAAATTTGACCTTTTGTTCCG 59.541 40.000 16.91 3.36 35.01 4.30
3273 9814 5.458779 CGTCTCAAATTTGACCTTTTGTTCC 59.541 40.000 16.91 0.09 35.01 3.62
3274 9815 6.262601 TCGTCTCAAATTTGACCTTTTGTTC 58.737 36.000 16.91 4.45 35.01 3.18
3275 9816 6.202516 TCGTCTCAAATTTGACCTTTTGTT 57.797 33.333 16.91 0.00 35.01 2.83
3276 9817 5.828299 TCGTCTCAAATTTGACCTTTTGT 57.172 34.783 16.91 0.00 35.01 2.83
3277 9818 7.518731 TTTTCGTCTCAAATTTGACCTTTTG 57.481 32.000 16.91 6.65 34.80 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.