Multiple sequence alignment - TraesCS3A01G018200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G018200 chr3A 100.000 4235 0 0 1 4235 11411724 11415958 0.000000e+00 7821.0
1 TraesCS3A01G018200 chr3A 87.435 1345 151 14 1894 3226 11471601 11472939 0.000000e+00 1531.0
2 TraesCS3A01G018200 chr3A 85.704 1385 164 14 2137 3491 10956430 10957810 0.000000e+00 1430.0
3 TraesCS3A01G018200 chr3A 82.086 1122 172 22 224 1331 10827168 10828274 0.000000e+00 931.0
4 TraesCS3A01G018200 chr3A 80.000 1230 196 28 350 1544 11470224 11471438 0.000000e+00 863.0
5 TraesCS3A01G018200 chr3A 85.488 379 48 6 418 791 11381642 11382018 5.130000e-104 388.0
6 TraesCS3A01G018200 chr3A 93.750 96 6 0 1595 1690 11413222 11413317 1.230000e-30 145.0
7 TraesCS3A01G018200 chr3A 93.750 96 6 0 1499 1594 11413318 11413413 1.230000e-30 145.0
8 TraesCS3A01G018200 chrUn 94.898 3195 147 9 44 3227 267787822 267791011 0.000000e+00 4983.0
9 TraesCS3A01G018200 chrUn 94.717 3218 150 12 44 3248 268799875 268796665 0.000000e+00 4983.0
10 TraesCS3A01G018200 chrUn 87.650 1587 157 20 1894 3446 35330535 35328954 0.000000e+00 1808.0
11 TraesCS3A01G018200 chrUn 87.847 1333 144 16 1925 3248 35312186 35310863 0.000000e+00 1548.0
12 TraesCS3A01G018200 chrUn 88.551 1284 124 7 1940 3221 36340551 36339289 0.000000e+00 1535.0
13 TraesCS3A01G018200 chrUn 88.551 1284 124 7 1940 3221 214894454 214895716 0.000000e+00 1535.0
14 TraesCS3A01G018200 chrUn 82.796 1116 169 20 230 1331 34654769 34653663 0.000000e+00 976.0
15 TraesCS3A01G018200 chrUn 79.585 1254 223 24 170 1408 35314304 35313069 0.000000e+00 867.0
16 TraesCS3A01G018200 chrUn 82.407 216 33 5 1120 1331 197248487 197248273 2.600000e-42 183.0
17 TraesCS3A01G018200 chrUn 79.167 288 26 19 3964 4235 35328427 35328158 7.280000e-38 169.0
18 TraesCS3A01G018200 chrUn 92.708 96 7 0 1499 1594 267789382 267789477 5.710000e-29 139.0
19 TraesCS3A01G018200 chrUn 92.708 96 7 0 1499 1594 268798315 268798220 5.710000e-29 139.0
20 TraesCS3A01G018200 chrUn 82.353 102 6 6 4140 4235 238778100 238778005 1.260000e-10 78.7
21 TraesCS3A01G018200 chrUn 80.165 121 10 8 4121 4235 240358157 240358269 1.260000e-10 78.7
22 TraesCS3A01G018200 chr3D 88.546 1362 145 10 1894 3248 28327774 28326417 0.000000e+00 1640.0
23 TraesCS3A01G018200 chr3D 86.686 1397 142 22 2111 3469 5014845 5016235 0.000000e+00 1509.0
24 TraesCS3A01G018200 chr3D 82.419 1513 205 38 54 1546 28329696 28328225 0.000000e+00 1264.0
25 TraesCS3A01G018200 chr3D 80.599 835 134 17 360 1176 5013321 5014145 1.670000e-173 619.0
26 TraesCS3A01G018200 chr3D 85.470 117 13 2 1432 1547 5014422 5014535 7.440000e-23 119.0
27 TraesCS3A01G018200 chr1A 81.250 224 23 4 1654 1858 376514800 376515023 3.390000e-36 163.0
28 TraesCS3A01G018200 chr4A 79.675 246 20 16 1641 1861 155809635 155809875 2.640000e-32 150.0
29 TraesCS3A01G018200 chr4A 79.545 176 16 9 1706 1862 548783827 548784001 1.610000e-19 108.0
30 TraesCS3A01G018200 chr4A 97.826 46 1 0 1546 1591 577499740 577499785 3.510000e-11 80.5
31 TraesCS3A01G018200 chr4A 95.556 45 2 0 1642 1686 577499740 577499784 5.870000e-09 73.1
32 TraesCS3A01G018200 chr4B 83.916 143 18 4 1710 1852 78482911 78483048 9.550000e-27 132.0
33 TraesCS3A01G018200 chr4B 82.171 129 5 8 1706 1817 71341544 71341417 1.250000e-15 95.3
34 TraesCS3A01G018200 chr4D 77.586 232 34 4 1645 1858 35676503 35676272 1.600000e-24 124.0
35 TraesCS3A01G018200 chr7B 86.916 107 14 0 1648 1754 206340520 206340414 2.070000e-23 121.0
36 TraesCS3A01G018200 chr1B 83.721 86 14 0 1764 1849 507374791 507374876 9.760000e-12 82.4
37 TraesCS3A01G018200 chr5D 75.956 183 27 7 1692 1857 83086151 83086333 1.260000e-10 78.7
38 TraesCS3A01G018200 chr6A 95.238 42 2 0 1543 1584 176408770 176408811 2.730000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G018200 chr3A 11411724 11415958 4234 False 2703.666667 7821 95.833333 1 4235 3 chr3A.!!$F4 4234
1 TraesCS3A01G018200 chr3A 10956430 10957810 1380 False 1430.000000 1430 85.704000 2137 3491 1 chr3A.!!$F2 1354
2 TraesCS3A01G018200 chr3A 11470224 11472939 2715 False 1197.000000 1531 83.717500 350 3226 2 chr3A.!!$F5 2876
3 TraesCS3A01G018200 chr3A 10827168 10828274 1106 False 931.000000 931 82.086000 224 1331 1 chr3A.!!$F1 1107
4 TraesCS3A01G018200 chrUn 267787822 267791011 3189 False 2561.000000 4983 93.803000 44 3227 2 chrUn.!!$F3 3183
5 TraesCS3A01G018200 chrUn 268796665 268799875 3210 True 2561.000000 4983 93.712500 44 3248 2 chrUn.!!$R7 3204
6 TraesCS3A01G018200 chrUn 36339289 36340551 1262 True 1535.000000 1535 88.551000 1940 3221 1 chrUn.!!$R2 1281
7 TraesCS3A01G018200 chrUn 214894454 214895716 1262 False 1535.000000 1535 88.551000 1940 3221 1 chrUn.!!$F1 1281
8 TraesCS3A01G018200 chrUn 35310863 35314304 3441 True 1207.500000 1548 83.716000 170 3248 2 chrUn.!!$R5 3078
9 TraesCS3A01G018200 chrUn 35328158 35330535 2377 True 988.500000 1808 83.408500 1894 4235 2 chrUn.!!$R6 2341
10 TraesCS3A01G018200 chrUn 34653663 34654769 1106 True 976.000000 976 82.796000 230 1331 1 chrUn.!!$R1 1101
11 TraesCS3A01G018200 chr3D 28326417 28329696 3279 True 1452.000000 1640 85.482500 54 3248 2 chr3D.!!$R1 3194
12 TraesCS3A01G018200 chr3D 5013321 5016235 2914 False 749.000000 1509 84.251667 360 3469 3 chr3D.!!$F1 3109

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.179100 ACCATTCATCGGTCGCTCAG 60.179 55.0 0.0 0.0 27.3 3.35 F
29 30 0.179137 CGGTCGCTCAGCTATCACAA 60.179 55.0 0.0 0.0 0.0 3.33 F
1565 1688 0.461163 GGGTGTGTTTGGTTTGTGCC 60.461 55.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 1878 0.952010 CCAACCTTTTGGCATGCTGC 60.952 55.00 18.92 1.78 46.09 5.25 R
2167 3318 5.551760 ACTACAAATGCAGTTACAGATGC 57.448 39.13 12.30 0.00 42.86 3.91 R
3675 4920 0.107508 TCAGCTGGCAGGTGCTAATC 60.108 55.00 35.28 8.96 43.02 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.065575 AACCATTCATCGGTCGCTC 57.934 52.632 0.00 0.00 34.99 5.03
19 20 0.249120 AACCATTCATCGGTCGCTCA 59.751 50.000 0.00 0.00 34.99 4.26
20 21 0.179100 ACCATTCATCGGTCGCTCAG 60.179 55.000 0.00 0.00 27.30 3.35
21 22 1.493950 CCATTCATCGGTCGCTCAGC 61.494 60.000 0.00 0.00 0.00 4.26
22 23 0.529337 CATTCATCGGTCGCTCAGCT 60.529 55.000 0.00 0.00 0.00 4.24
23 24 1.032794 ATTCATCGGTCGCTCAGCTA 58.967 50.000 0.00 0.00 0.00 3.32
24 25 1.032794 TTCATCGGTCGCTCAGCTAT 58.967 50.000 0.00 0.00 0.00 2.97
25 26 0.593618 TCATCGGTCGCTCAGCTATC 59.406 55.000 0.00 0.00 0.00 2.08
26 27 0.312102 CATCGGTCGCTCAGCTATCA 59.688 55.000 0.00 0.00 0.00 2.15
27 28 0.312416 ATCGGTCGCTCAGCTATCAC 59.688 55.000 0.00 0.00 0.00 3.06
28 29 1.029947 TCGGTCGCTCAGCTATCACA 61.030 55.000 0.00 0.00 0.00 3.58
29 30 0.179137 CGGTCGCTCAGCTATCACAA 60.179 55.000 0.00 0.00 0.00 3.33
30 31 1.565305 GGTCGCTCAGCTATCACAAG 58.435 55.000 0.00 0.00 0.00 3.16
31 32 1.135139 GGTCGCTCAGCTATCACAAGA 59.865 52.381 0.00 0.00 0.00 3.02
32 33 2.189342 GTCGCTCAGCTATCACAAGAC 58.811 52.381 0.00 0.00 0.00 3.01
33 34 1.195347 CGCTCAGCTATCACAAGACG 58.805 55.000 0.00 0.00 0.00 4.18
34 35 1.468224 CGCTCAGCTATCACAAGACGT 60.468 52.381 0.00 0.00 0.00 4.34
35 36 2.189342 GCTCAGCTATCACAAGACGTC 58.811 52.381 7.70 7.70 0.00 4.34
36 37 2.416027 GCTCAGCTATCACAAGACGTCA 60.416 50.000 19.50 0.00 0.00 4.35
37 38 3.838120 CTCAGCTATCACAAGACGTCAA 58.162 45.455 19.50 0.00 0.00 3.18
38 39 3.575630 TCAGCTATCACAAGACGTCAAC 58.424 45.455 19.50 0.00 0.00 3.18
39 40 3.005367 TCAGCTATCACAAGACGTCAACA 59.995 43.478 19.50 0.00 0.00 3.33
40 41 3.740832 CAGCTATCACAAGACGTCAACAA 59.259 43.478 19.50 0.00 0.00 2.83
41 42 3.990469 AGCTATCACAAGACGTCAACAAG 59.010 43.478 19.50 6.61 0.00 3.16
42 43 3.987868 GCTATCACAAGACGTCAACAAGA 59.012 43.478 19.50 9.11 0.00 3.02
54 55 8.603242 AGACGTCAACAAGACTTTTATTATGT 57.397 30.769 19.50 0.00 45.32 2.29
55 56 8.709646 AGACGTCAACAAGACTTTTATTATGTC 58.290 33.333 19.50 0.00 45.32 3.06
318 328 1.081094 TCATGACAAGCACAGCATCG 58.919 50.000 0.00 0.00 0.00 3.84
391 412 5.192176 GCCTTCTCTTCTTCCATCTTCATT 58.808 41.667 0.00 0.00 0.00 2.57
411 435 6.064060 TCATTCCAATACATTCCATGGACTC 58.936 40.000 15.91 0.00 41.48 3.36
704 728 1.080974 GTCATCAACGTCGTCCCGT 60.081 57.895 0.00 0.00 44.23 5.28
1068 1103 6.127338 TGGTGAAACAACATTCAAATGGTACA 60.127 34.615 7.58 0.00 41.61 2.90
1069 1104 6.758886 GGTGAAACAACATTCAAATGGTACAA 59.241 34.615 7.58 0.00 41.02 2.41
1137 1174 1.344438 ACTGGATTCAGCTCACGAACA 59.656 47.619 0.00 0.00 44.59 3.18
1287 1326 7.445121 TGCCGATCTCTTATATTCTGATGTTT 58.555 34.615 0.00 0.00 0.00 2.83
1378 1420 6.183360 TGCAAACCAGAGAAATCGTTAACTTT 60.183 34.615 3.71 0.00 0.00 2.66
1511 1633 6.007703 CCCAACAAAGGTAAGAGATAAACCA 58.992 40.000 0.00 0.00 35.64 3.67
1565 1688 0.461163 GGGTGTGTTTGGTTTGTGCC 60.461 55.000 0.00 0.00 0.00 5.01
1622 1745 9.642343 AGAGATAAACCTTAATTAACCATTCCC 57.358 33.333 0.00 0.00 0.00 3.97
1713 1836 4.390909 GCCAAGAATTTGATGGAGCTTTTG 59.609 41.667 8.74 0.00 36.36 2.44
1755 1878 6.366877 CCAACATTGGCTAGAAAAATGAACAG 59.633 38.462 15.37 5.84 42.21 3.16
2086 3234 4.720046 TGCCACCATAACTCTTTTGTGTA 58.280 39.130 0.00 0.00 0.00 2.90
2167 3318 4.456911 TCCTTTCTTTGTAATCAGCAGCAG 59.543 41.667 0.00 0.00 0.00 4.24
2176 3327 2.704464 ATCAGCAGCAGCATCTGTAA 57.296 45.000 3.17 0.00 45.49 2.41
2221 3372 1.227556 GTGGCCACCGCGATCTATT 60.228 57.895 26.31 0.00 35.02 1.73
2232 3383 4.698304 ACCGCGATCTATTTTTCCTTGAAA 59.302 37.500 8.23 0.00 0.00 2.69
2510 3661 3.706183 TCCACCATGCAAATATTGTCCA 58.294 40.909 0.00 0.00 0.00 4.02
2793 3944 0.390492 ACTTTGGCCTTGCAAAGCTC 59.610 50.000 19.01 10.17 44.44 4.09
2886 4037 2.372852 CTCCCGGAACTTTGGAGGA 58.627 57.895 0.73 0.00 41.64 3.71
2931 4082 4.141287 ACAGTTTTGGCATGCTAGTGTTA 58.859 39.130 18.92 0.00 0.00 2.41
2985 4136 1.072331 AGTGTTGGAAGCCAGAACGAT 59.928 47.619 0.00 0.00 33.81 3.73
2988 4139 1.464997 GTTGGAAGCCAGAACGATGTC 59.535 52.381 0.00 0.00 33.81 3.06
3033 4184 2.789409 AAGTAATCACTGGGCAGGAC 57.211 50.000 0.00 0.00 34.36 3.85
3051 4202 4.995487 CAGGACTTGGTAGTTACTTTGGAC 59.005 45.833 0.00 0.00 33.84 4.02
3055 4206 5.313712 ACTTGGTAGTTACTTTGGACATGG 58.686 41.667 0.00 0.00 0.00 3.66
3059 4210 3.788227 AGTTACTTTGGACATGGCAGA 57.212 42.857 0.00 0.00 0.00 4.26
3060 4211 3.679389 AGTTACTTTGGACATGGCAGAG 58.321 45.455 0.00 0.00 0.00 3.35
3064 4215 2.158475 ACTTTGGACATGGCAGAGGAAA 60.158 45.455 0.00 0.00 0.00 3.13
3066 4217 2.205022 TGGACATGGCAGAGGAAAAG 57.795 50.000 0.00 0.00 0.00 2.27
3084 4235 6.663523 AGGAAAAGAAAGAAAAGGTGAGACAA 59.336 34.615 0.00 0.00 0.00 3.18
3088 4239 7.793927 AAGAAAGAAAAGGTGAGACAACTAG 57.206 36.000 0.00 0.00 27.88 2.57
3154 4305 4.311816 CCATCAATGGCAAAGGTGATAC 57.688 45.455 4.57 0.00 41.75 2.24
3201 4352 2.408565 CTACAGATTCCCCCTAAGCCA 58.591 52.381 0.00 0.00 0.00 4.75
3227 4378 3.002791 TGTCGTCTGAAAATCATCCTGC 58.997 45.455 0.00 0.00 0.00 4.85
3280 4450 6.058833 TGATTTGGTACATACTGTGTGTTGT 58.941 36.000 15.36 4.46 42.24 3.32
3302 4478 1.878088 CAGCAATGCATAGCACTAGGG 59.122 52.381 8.35 0.00 43.04 3.53
3324 4500 5.183904 GGGTGCAGTGTATTTTCATCTTTCT 59.816 40.000 0.00 0.00 0.00 2.52
3325 4501 6.088824 GGTGCAGTGTATTTTCATCTTTCTG 58.911 40.000 0.00 0.00 0.00 3.02
3326 4502 6.294176 GGTGCAGTGTATTTTCATCTTTCTGT 60.294 38.462 0.00 0.00 0.00 3.41
3328 4504 7.324616 GTGCAGTGTATTTTCATCTTTCTGTTC 59.675 37.037 0.00 0.00 0.00 3.18
3409 4594 5.752892 ATGCAAGAACATATGAGAAGCAG 57.247 39.130 10.38 0.00 32.59 4.24
3477 4662 3.243367 TGTTGCTTACCTTGTTGTGATGC 60.243 43.478 0.00 0.00 0.00 3.91
3480 4665 3.077359 GCTTACCTTGTTGTGATGCTCT 58.923 45.455 0.00 0.00 0.00 4.09
3504 4701 5.218139 GCTGATTTATATTTCCTGCAGTGC 58.782 41.667 13.81 8.58 0.00 4.40
3508 4705 8.462589 TGATTTATATTTCCTGCAGTGCATTA 57.537 30.769 20.10 6.87 38.13 1.90
3509 4706 9.081204 TGATTTATATTTCCTGCAGTGCATTAT 57.919 29.630 20.10 11.70 38.13 1.28
3517 4714 3.276857 CTGCAGTGCATTATTCCTCACT 58.723 45.455 20.10 0.00 38.13 3.41
3520 4717 3.287867 AGTGCATTATTCCTCACTGGG 57.712 47.619 0.00 0.00 38.25 4.45
3523 4768 2.225467 GCATTATTCCTCACTGGGCTC 58.775 52.381 0.00 0.00 36.20 4.70
3526 4771 1.794714 TATTCCTCACTGGGCTCCTC 58.205 55.000 0.00 0.00 36.20 3.71
3535 4780 0.322008 CTGGGCTCCTCAGGAAACAC 60.322 60.000 0.00 0.00 0.00 3.32
3536 4781 1.059584 TGGGCTCCTCAGGAAACACA 61.060 55.000 0.00 0.00 0.00 3.72
3542 4787 4.072131 GCTCCTCAGGAAACACAATTACA 58.928 43.478 0.00 0.00 0.00 2.41
3557 4802 4.244862 CAATTACACCCTTTGATTGCCAC 58.755 43.478 0.00 0.00 0.00 5.01
3561 4806 1.273327 CACCCTTTGATTGCCACTTCC 59.727 52.381 0.00 0.00 0.00 3.46
3563 4808 1.247567 CCTTTGATTGCCACTTCCGT 58.752 50.000 0.00 0.00 0.00 4.69
3564 4809 1.613437 CCTTTGATTGCCACTTCCGTT 59.387 47.619 0.00 0.00 0.00 4.44
3566 4811 1.686355 TTGATTGCCACTTCCGTTGT 58.314 45.000 0.00 0.00 0.00 3.32
3567 4812 0.950836 TGATTGCCACTTCCGTTGTG 59.049 50.000 0.00 0.00 35.39 3.33
3568 4813 0.387239 GATTGCCACTTCCGTTGTGC 60.387 55.000 0.00 0.00 34.38 4.57
3569 4814 0.823356 ATTGCCACTTCCGTTGTGCT 60.823 50.000 0.00 0.00 34.38 4.40
3570 4815 1.723608 TTGCCACTTCCGTTGTGCTG 61.724 55.000 0.00 0.00 34.38 4.41
3571 4816 1.891919 GCCACTTCCGTTGTGCTGA 60.892 57.895 0.00 0.00 34.38 4.26
3572 4817 1.845809 GCCACTTCCGTTGTGCTGAG 61.846 60.000 0.00 0.00 34.38 3.35
3576 4821 3.325870 CACTTCCGTTGTGCTGAGAATA 58.674 45.455 0.00 0.00 0.00 1.75
3577 4822 3.935203 CACTTCCGTTGTGCTGAGAATAT 59.065 43.478 0.00 0.00 0.00 1.28
3578 4823 4.033358 CACTTCCGTTGTGCTGAGAATATC 59.967 45.833 0.00 0.00 0.00 1.63
3582 4827 3.684305 CCGTTGTGCTGAGAATATCACAA 59.316 43.478 2.93 2.93 44.23 3.33
3586 4831 6.426980 TTGTGCTGAGAATATCACAACATC 57.573 37.500 2.93 0.00 42.38 3.06
3587 4832 5.490159 TGTGCTGAGAATATCACAACATCA 58.510 37.500 0.00 0.00 36.62 3.07
3588 4833 6.117488 TGTGCTGAGAATATCACAACATCAT 58.883 36.000 0.00 0.00 36.62 2.45
3589 4834 6.600427 TGTGCTGAGAATATCACAACATCATT 59.400 34.615 0.00 0.00 36.62 2.57
3590 4835 7.130917 GTGCTGAGAATATCACAACATCATTC 58.869 38.462 0.00 0.00 33.22 2.67
3591 4836 7.012138 GTGCTGAGAATATCACAACATCATTCT 59.988 37.037 0.00 0.00 38.36 2.40
3592 4837 8.206189 TGCTGAGAATATCACAACATCATTCTA 58.794 33.333 0.00 0.00 36.38 2.10
3593 4838 8.494347 GCTGAGAATATCACAACATCATTCTAC 58.506 37.037 0.00 0.00 36.38 2.59
3594 4839 9.538508 CTGAGAATATCACAACATCATTCTACA 57.461 33.333 0.00 0.00 36.38 2.74
3595 4840 9.538508 TGAGAATATCACAACATCATTCTACAG 57.461 33.333 0.00 0.00 36.38 2.74
3596 4841 8.899427 AGAATATCACAACATCATTCTACAGG 57.101 34.615 0.00 0.00 34.91 4.00
3597 4842 8.489489 AGAATATCACAACATCATTCTACAGGT 58.511 33.333 0.00 0.00 34.91 4.00
3598 4843 8.668510 AATATCACAACATCATTCTACAGGTC 57.331 34.615 0.00 0.00 0.00 3.85
3599 4844 4.494484 TCACAACATCATTCTACAGGTCG 58.506 43.478 0.00 0.00 0.00 4.79
3600 4845 4.219725 TCACAACATCATTCTACAGGTCGA 59.780 41.667 0.00 0.00 0.00 4.20
3601 4846 4.327357 CACAACATCATTCTACAGGTCGAC 59.673 45.833 7.13 7.13 0.00 4.20
3602 4847 4.220821 ACAACATCATTCTACAGGTCGACT 59.779 41.667 16.46 0.00 0.00 4.18
3603 4848 5.417894 ACAACATCATTCTACAGGTCGACTA 59.582 40.000 16.46 0.00 0.00 2.59
3604 4849 6.071560 ACAACATCATTCTACAGGTCGACTAA 60.072 38.462 16.46 1.43 0.00 2.24
3605 4850 6.716934 ACATCATTCTACAGGTCGACTAAT 57.283 37.500 16.46 3.39 0.00 1.73
3606 4851 6.740110 ACATCATTCTACAGGTCGACTAATC 58.260 40.000 16.46 0.00 0.00 1.75
3607 4852 6.321435 ACATCATTCTACAGGTCGACTAATCA 59.679 38.462 16.46 0.00 0.00 2.57
3612 4857 1.831106 ACAGGTCGACTAATCATGCCA 59.169 47.619 16.46 0.00 0.00 4.92
3621 4866 4.024556 CGACTAATCATGCCATGTTCCTTC 60.025 45.833 4.31 0.00 0.00 3.46
3629 4874 3.765381 TGCCATGTTCCTTCAAATCTCA 58.235 40.909 0.00 0.00 0.00 3.27
3633 4878 4.142447 CCATGTTCCTTCAAATCTCAGCAG 60.142 45.833 0.00 0.00 0.00 4.24
3661 4906 4.197107 GCACTAGCGTGGAATATGTTTC 57.803 45.455 0.00 0.00 41.51 2.78
3664 4909 4.745125 CACTAGCGTGGAATATGTTTCGAT 59.255 41.667 0.00 0.00 37.50 3.59
3675 4920 0.535335 TGTTTCGATCTTCCCCCTCG 59.465 55.000 0.00 0.00 0.00 4.63
3677 4926 1.413077 GTTTCGATCTTCCCCCTCGAT 59.587 52.381 0.00 0.00 40.69 3.59
3681 4930 1.067495 CGATCTTCCCCCTCGATTAGC 60.067 57.143 0.00 0.00 34.41 3.09
3686 4935 1.048724 TCCCCCTCGATTAGCACCTG 61.049 60.000 0.00 0.00 0.00 4.00
3690 4939 0.531532 CCTCGATTAGCACCTGCCAG 60.532 60.000 0.00 0.00 43.38 4.85
3695 4944 0.393537 ATTAGCACCTGCCAGCTGAC 60.394 55.000 17.39 3.38 41.97 3.51
3696 4945 2.469465 TTAGCACCTGCCAGCTGACC 62.469 60.000 17.39 6.33 41.97 4.02
3697 4946 4.341783 GCACCTGCCAGCTGACCT 62.342 66.667 17.39 0.00 34.31 3.85
3698 4947 2.359602 CACCTGCCAGCTGACCTG 60.360 66.667 17.39 9.54 41.41 4.00
3704 4953 0.983467 TGCCAGCTGACCTGTGAATA 59.017 50.000 17.39 0.00 40.06 1.75
3705 4954 1.350684 TGCCAGCTGACCTGTGAATAA 59.649 47.619 17.39 0.00 40.06 1.40
3707 4956 2.615912 GCCAGCTGACCTGTGAATAATC 59.384 50.000 17.39 0.00 40.06 1.75
3708 4957 3.877559 CCAGCTGACCTGTGAATAATCA 58.122 45.455 17.39 0.00 40.06 2.57
3709 4958 3.875727 CCAGCTGACCTGTGAATAATCAG 59.124 47.826 17.39 0.00 40.06 2.90
3710 4959 4.511527 CAGCTGACCTGTGAATAATCAGT 58.488 43.478 8.42 0.00 39.21 3.41
3711 4960 4.569966 CAGCTGACCTGTGAATAATCAGTC 59.430 45.833 8.42 0.00 39.21 3.51
3713 4962 5.104610 AGCTGACCTGTGAATAATCAGTCAT 60.105 40.000 2.78 0.00 37.53 3.06
3714 4963 5.236047 GCTGACCTGTGAATAATCAGTCATC 59.764 44.000 2.78 0.00 37.53 2.92
3715 4964 6.550938 TGACCTGTGAATAATCAGTCATCT 57.449 37.500 0.00 0.00 34.92 2.90
3716 4965 6.577103 TGACCTGTGAATAATCAGTCATCTC 58.423 40.000 0.00 0.00 34.92 2.75
3717 4966 5.923204 ACCTGTGAATAATCAGTCATCTCC 58.077 41.667 0.00 0.00 35.88 3.71
3718 4967 4.987285 CCTGTGAATAATCAGTCATCTCCG 59.013 45.833 0.00 0.00 35.88 4.63
3719 4968 5.452496 CCTGTGAATAATCAGTCATCTCCGT 60.452 44.000 0.00 0.00 35.88 4.69
3720 4969 5.351458 TGTGAATAATCAGTCATCTCCGTG 58.649 41.667 0.00 0.00 35.88 4.94
3721 4970 5.105351 TGTGAATAATCAGTCATCTCCGTGT 60.105 40.000 0.00 0.00 35.88 4.49
3722 4971 5.233050 GTGAATAATCAGTCATCTCCGTGTG 59.767 44.000 0.00 0.00 35.88 3.82
3723 4972 5.127031 TGAATAATCAGTCATCTCCGTGTGA 59.873 40.000 0.00 0.00 0.00 3.58
3724 4973 5.798125 ATAATCAGTCATCTCCGTGTGAT 57.202 39.130 0.00 0.00 0.00 3.06
3725 4974 6.901081 ATAATCAGTCATCTCCGTGTGATA 57.099 37.500 0.00 0.00 0.00 2.15
3726 4975 4.844998 ATCAGTCATCTCCGTGTGATAG 57.155 45.455 0.00 0.00 0.00 2.08
3727 4976 3.621558 TCAGTCATCTCCGTGTGATAGT 58.378 45.455 0.00 0.00 0.00 2.12
3728 4977 4.777463 TCAGTCATCTCCGTGTGATAGTA 58.223 43.478 0.00 0.00 0.00 1.82
3729 4978 4.575236 TCAGTCATCTCCGTGTGATAGTAC 59.425 45.833 0.00 0.00 0.00 2.73
3733 4982 4.335594 TCATCTCCGTGTGATAGTACACTG 59.664 45.833 7.35 1.49 46.70 3.66
3745 4994 6.421202 GTGATAGTACACTGGTAGCTATTTGC 59.579 42.308 0.00 0.00 38.59 3.68
3752 5001 4.758674 CACTGGTAGCTATTTGCAGCATAT 59.241 41.667 0.00 0.00 44.35 1.78
3758 5007 3.499918 AGCTATTTGCAGCATATCGGAAC 59.500 43.478 1.05 0.00 44.35 3.62
3761 5010 1.378531 TTGCAGCATATCGGAACCAC 58.621 50.000 0.00 0.00 0.00 4.16
3770 5019 0.620556 ATCGGAACCACATGGAGCTT 59.379 50.000 4.53 0.00 38.94 3.74
3771 5020 1.271856 TCGGAACCACATGGAGCTTA 58.728 50.000 4.53 0.00 38.94 3.09
3773 5022 2.039216 TCGGAACCACATGGAGCTTAAA 59.961 45.455 4.53 0.00 38.94 1.52
3785 5034 7.535940 CACATGGAGCTTAAATTTTTGCATTTG 59.464 33.333 14.57 7.46 0.00 2.32
3790 5039 7.193377 AGCTTAAATTTTTGCATTTGGACAG 57.807 32.000 14.57 0.00 0.00 3.51
3798 5047 7.856145 TTTTTGCATTTGGACAGTTTAACAT 57.144 28.000 0.00 0.00 0.00 2.71
3799 5048 6.841443 TTTGCATTTGGACAGTTTAACATG 57.159 33.333 0.00 0.00 0.00 3.21
3800 5049 4.880759 TGCATTTGGACAGTTTAACATGG 58.119 39.130 0.00 0.00 0.00 3.66
3803 5052 6.165577 GCATTTGGACAGTTTAACATGGAAT 58.834 36.000 0.00 0.00 0.00 3.01
3804 5053 6.311200 GCATTTGGACAGTTTAACATGGAATC 59.689 38.462 0.00 0.00 0.00 2.52
3805 5054 6.968263 TTTGGACAGTTTAACATGGAATCA 57.032 33.333 0.00 0.00 0.00 2.57
3806 5055 5.957842 TGGACAGTTTAACATGGAATCAC 57.042 39.130 0.00 0.00 0.00 3.06
3825 5074 2.032550 CACATGGAGCTTTATTCTGCGG 59.967 50.000 0.00 0.00 0.00 5.69
3826 5075 2.092968 ACATGGAGCTTTATTCTGCGGA 60.093 45.455 0.00 0.00 0.00 5.54
3846 5095 4.192317 GGATCCACGCTTCAGTATTTTCT 58.808 43.478 6.95 0.00 0.00 2.52
3848 5097 5.234543 GGATCCACGCTTCAGTATTTTCTAC 59.765 44.000 6.95 0.00 0.00 2.59
3849 5098 5.142061 TCCACGCTTCAGTATTTTCTACA 57.858 39.130 0.00 0.00 0.00 2.74
3850 5099 5.543714 TCCACGCTTCAGTATTTTCTACAA 58.456 37.500 0.00 0.00 0.00 2.41
3852 5101 6.653320 TCCACGCTTCAGTATTTTCTACAATT 59.347 34.615 0.00 0.00 0.00 2.32
3861 5110 9.396022 TCAGTATTTTCTACAATTCATTCCTCC 57.604 33.333 0.00 0.00 0.00 4.30
3862 5111 8.338259 CAGTATTTTCTACAATTCATTCCTCCG 58.662 37.037 0.00 0.00 0.00 4.63
3863 5112 8.047310 AGTATTTTCTACAATTCATTCCTCCGT 58.953 33.333 0.00 0.00 0.00 4.69
3864 5113 7.703058 ATTTTCTACAATTCATTCCTCCGTT 57.297 32.000 0.00 0.00 0.00 4.44
3867 5116 4.935205 TCTACAATTCATTCCTCCGTTGTG 59.065 41.667 0.00 0.00 32.64 3.33
3868 5117 3.486383 ACAATTCATTCCTCCGTTGTGT 58.514 40.909 0.00 0.00 0.00 3.72
3869 5118 4.647611 ACAATTCATTCCTCCGTTGTGTA 58.352 39.130 0.00 0.00 0.00 2.90
3870 5119 4.695455 ACAATTCATTCCTCCGTTGTGTAG 59.305 41.667 0.00 0.00 0.00 2.74
3871 5120 4.553330 ATTCATTCCTCCGTTGTGTAGT 57.447 40.909 0.00 0.00 0.00 2.73
3872 5121 3.313012 TCATTCCTCCGTTGTGTAGTG 57.687 47.619 0.00 0.00 0.00 2.74
3873 5122 2.631062 TCATTCCTCCGTTGTGTAGTGT 59.369 45.455 0.00 0.00 0.00 3.55
3874 5123 3.827876 TCATTCCTCCGTTGTGTAGTGTA 59.172 43.478 0.00 0.00 0.00 2.90
3875 5124 3.928727 TTCCTCCGTTGTGTAGTGTAG 57.071 47.619 0.00 0.00 0.00 2.74
3877 5126 4.019792 TCCTCCGTTGTGTAGTGTAGTA 57.980 45.455 0.00 0.00 0.00 1.82
3878 5127 4.005650 TCCTCCGTTGTGTAGTGTAGTAG 58.994 47.826 0.00 0.00 0.00 2.57
3880 5129 2.489329 TCCGTTGTGTAGTGTAGTAGCC 59.511 50.000 0.00 0.00 0.00 3.93
3881 5130 2.229543 CCGTTGTGTAGTGTAGTAGCCA 59.770 50.000 0.00 0.00 0.00 4.75
3882 5131 3.119245 CCGTTGTGTAGTGTAGTAGCCAT 60.119 47.826 0.00 0.00 0.00 4.40
3884 5133 4.927425 CGTTGTGTAGTGTAGTAGCCATTT 59.073 41.667 0.00 0.00 0.00 2.32
3886 5135 5.080969 TGTGTAGTGTAGTAGCCATTTCC 57.919 43.478 0.00 0.00 0.00 3.13
3888 5137 5.247564 TGTGTAGTGTAGTAGCCATTTCCTT 59.752 40.000 0.00 0.00 0.00 3.36
3889 5138 5.581085 GTGTAGTGTAGTAGCCATTTCCTTG 59.419 44.000 0.00 0.00 0.00 3.61
3892 5141 4.532521 AGTGTAGTAGCCATTTCCTTGTCT 59.467 41.667 0.00 0.00 0.00 3.41
3893 5142 4.631813 GTGTAGTAGCCATTTCCTTGTCTG 59.368 45.833 0.00 0.00 0.00 3.51
3894 5143 4.530553 TGTAGTAGCCATTTCCTTGTCTGA 59.469 41.667 0.00 0.00 0.00 3.27
3896 5145 5.184892 AGTAGCCATTTCCTTGTCTGAAT 57.815 39.130 0.00 0.00 0.00 2.57
3897 5146 5.189180 AGTAGCCATTTCCTTGTCTGAATC 58.811 41.667 0.00 0.00 0.00 2.52
3898 5147 4.038271 AGCCATTTCCTTGTCTGAATCA 57.962 40.909 0.00 0.00 0.00 2.57
3901 5150 4.022068 GCCATTTCCTTGTCTGAATCACAA 60.022 41.667 0.00 0.00 32.75 3.33
3902 5151 5.337009 GCCATTTCCTTGTCTGAATCACAAT 60.337 40.000 0.00 0.00 33.30 2.71
3903 5152 6.127647 GCCATTTCCTTGTCTGAATCACAATA 60.128 38.462 0.00 0.00 33.30 1.90
3904 5153 7.253422 CCATTTCCTTGTCTGAATCACAATAC 58.747 38.462 0.00 0.00 33.30 1.89
3905 5154 7.094248 CCATTTCCTTGTCTGAATCACAATACA 60.094 37.037 0.00 0.00 33.30 2.29
3906 5155 7.439157 TTTCCTTGTCTGAATCACAATACAG 57.561 36.000 0.00 0.00 33.30 2.74
3907 5156 6.358974 TCCTTGTCTGAATCACAATACAGA 57.641 37.500 0.00 0.00 37.11 3.41
3908 5157 6.401394 TCCTTGTCTGAATCACAATACAGAG 58.599 40.000 0.00 0.00 39.52 3.35
3910 5159 7.046652 CCTTGTCTGAATCACAATACAGAGAT 58.953 38.462 0.00 0.00 39.52 2.75
3911 5160 8.200120 CCTTGTCTGAATCACAATACAGAGATA 58.800 37.037 0.00 0.00 39.52 1.98
3912 5161 8.932945 TTGTCTGAATCACAATACAGAGATAC 57.067 34.615 0.00 0.00 39.52 2.24
3947 5208 3.563390 GCTCTTTCCAATACAGAGATGCC 59.437 47.826 0.00 0.00 36.88 4.40
3948 5209 4.133078 CTCTTTCCAATACAGAGATGCCC 58.867 47.826 0.00 0.00 36.88 5.36
3949 5210 3.523157 TCTTTCCAATACAGAGATGCCCA 59.477 43.478 0.00 0.00 0.00 5.36
3950 5211 3.565764 TTCCAATACAGAGATGCCCAG 57.434 47.619 0.00 0.00 0.00 4.45
3951 5212 2.763039 TCCAATACAGAGATGCCCAGA 58.237 47.619 0.00 0.00 0.00 3.86
3952 5213 3.321039 TCCAATACAGAGATGCCCAGAT 58.679 45.455 0.00 0.00 0.00 2.90
3953 5214 3.326006 TCCAATACAGAGATGCCCAGATC 59.674 47.826 0.00 0.00 0.00 2.75
3954 5215 3.558746 CCAATACAGAGATGCCCAGATCC 60.559 52.174 0.00 0.00 0.00 3.36
3955 5216 1.722034 TACAGAGATGCCCAGATCCC 58.278 55.000 0.00 0.00 0.00 3.85
3956 5217 1.059006 ACAGAGATGCCCAGATCCCC 61.059 60.000 0.00 0.00 0.00 4.81
3957 5218 0.767446 CAGAGATGCCCAGATCCCCT 60.767 60.000 0.00 0.00 0.00 4.79
3958 5219 0.767446 AGAGATGCCCAGATCCCCTG 60.767 60.000 0.00 0.00 42.55 4.45
3959 5220 2.114838 GATGCCCAGATCCCCTGC 59.885 66.667 0.00 0.00 41.57 4.85
3960 5221 2.369291 ATGCCCAGATCCCCTGCT 60.369 61.111 0.00 0.00 41.57 4.24
3961 5222 2.004408 GATGCCCAGATCCCCTGCTT 62.004 60.000 0.00 0.00 41.57 3.91
3962 5223 0.698886 ATGCCCAGATCCCCTGCTTA 60.699 55.000 0.00 0.00 41.57 3.09
3970 5231 5.130145 CCCAGATCCCCTGCTTATATTCTAG 59.870 48.000 0.00 0.00 41.57 2.43
4003 5265 7.928706 AGAGTATTCTGTAACTAATCATGCCAC 59.071 37.037 0.00 0.00 30.72 5.01
4016 5278 1.529309 TGCCACTGCACCAGTTACA 59.471 52.632 0.00 0.00 42.59 2.41
4018 5280 0.593128 GCCACTGCACCAGTTACAAG 59.407 55.000 0.00 0.00 42.59 3.16
4019 5281 1.967319 CCACTGCACCAGTTACAAGT 58.033 50.000 0.00 0.00 42.59 3.16
4021 5283 2.806244 CCACTGCACCAGTTACAAGTAC 59.194 50.000 0.00 0.00 42.59 2.73
4022 5284 2.806244 CACTGCACCAGTTACAAGTACC 59.194 50.000 0.00 0.00 42.59 3.34
4026 5288 4.270834 TGCACCAGTTACAAGTACCAAAA 58.729 39.130 0.00 0.00 0.00 2.44
4028 5290 5.038683 GCACCAGTTACAAGTACCAAAAAC 58.961 41.667 0.00 0.00 0.00 2.43
4030 5292 6.622549 CACCAGTTACAAGTACCAAAAACAA 58.377 36.000 0.00 0.00 0.00 2.83
4031 5293 7.091443 CACCAGTTACAAGTACCAAAAACAAA 58.909 34.615 0.00 0.00 0.00 2.83
4032 5294 7.274686 CACCAGTTACAAGTACCAAAAACAAAG 59.725 37.037 0.00 0.00 0.00 2.77
4035 5297 8.030106 CAGTTACAAGTACCAAAAACAAAGGAA 58.970 33.333 0.00 0.00 0.00 3.36
4036 5298 8.248253 AGTTACAAGTACCAAAAACAAAGGAAG 58.752 33.333 0.00 0.00 0.00 3.46
4038 5300 6.863275 ACAAGTACCAAAAACAAAGGAAGAG 58.137 36.000 0.00 0.00 0.00 2.85
4039 5301 5.515797 AGTACCAAAAACAAAGGAAGAGC 57.484 39.130 0.00 0.00 0.00 4.09
4040 5302 4.953579 AGTACCAAAAACAAAGGAAGAGCA 59.046 37.500 0.00 0.00 0.00 4.26
4044 5306 4.122046 CAAAAACAAAGGAAGAGCAAGGG 58.878 43.478 0.00 0.00 0.00 3.95
4055 5317 2.551270 AGAGCAAGGGGATTACTCACA 58.449 47.619 0.00 0.00 34.20 3.58
4059 5321 2.099756 GCAAGGGGATTACTCACAATGC 59.900 50.000 0.00 0.00 32.86 3.56
4076 5338 2.996395 CCATGGCAGACAGCTCCT 59.004 61.111 0.00 0.00 44.79 3.69
4104 5371 3.536164 CTCGCCAGAGCAGAGGAT 58.464 61.111 0.00 0.00 39.83 3.24
4105 5372 1.821936 CTCGCCAGAGCAGAGGATT 59.178 57.895 0.00 0.00 39.83 3.01
4108 5375 1.153005 GCCAGAGCAGAGGATTGGG 60.153 63.158 0.00 0.00 39.53 4.12
4109 5376 1.530771 CCAGAGCAGAGGATTGGGG 59.469 63.158 0.00 0.00 0.00 4.96
4110 5377 1.530771 CAGAGCAGAGGATTGGGGG 59.469 63.158 0.00 0.00 0.00 5.40
4111 5378 2.194326 GAGCAGAGGATTGGGGGC 59.806 66.667 0.00 0.00 0.00 5.80
4112 5379 3.424105 AGCAGAGGATTGGGGGCC 61.424 66.667 0.00 0.00 0.00 5.80
4113 5380 3.424105 GCAGAGGATTGGGGGCCT 61.424 66.667 0.84 0.00 37.18 5.19
4114 5381 3.001358 GCAGAGGATTGGGGGCCTT 62.001 63.158 0.84 0.00 33.84 4.35
4116 5383 0.475906 CAGAGGATTGGGGGCCTTAG 59.524 60.000 0.84 0.00 33.84 2.18
4117 5384 1.151679 GAGGATTGGGGGCCTTAGC 59.848 63.158 0.84 0.00 33.84 3.09
4118 5385 2.203351 GGATTGGGGGCCTTAGCG 60.203 66.667 0.84 0.00 41.24 4.26
4121 5388 2.682582 GATTGGGGGCCTTAGCGGAG 62.683 65.000 0.84 0.00 41.24 4.63
4122 5389 3.935456 TTGGGGGCCTTAGCGGAGA 62.935 63.158 0.84 0.00 41.24 3.71
4123 5390 3.551407 GGGGGCCTTAGCGGAGAG 61.551 72.222 0.84 0.00 41.24 3.20
4124 5391 3.551407 GGGGCCTTAGCGGAGAGG 61.551 72.222 0.84 0.00 41.24 3.69
4175 5442 4.496927 CCGCCGGCCAATTTGAGC 62.497 66.667 23.46 0.00 0.00 4.26
4176 5443 4.496927 CGCCGGCCAATTTGAGCC 62.497 66.667 23.46 15.13 46.17 4.70
4193 5460 4.680237 CGGAGCTGCCCACGTGAA 62.680 66.667 19.30 0.83 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.179100 CTGAGCGACCGATGAATGGT 60.179 55.000 0.00 0.00 44.10 3.55
3 4 0.529337 AGCTGAGCGACCGATGAATG 60.529 55.000 0.00 0.00 0.00 2.67
4 5 1.032794 TAGCTGAGCGACCGATGAAT 58.967 50.000 0.00 0.00 0.00 2.57
6 7 0.593618 GATAGCTGAGCGACCGATGA 59.406 55.000 0.00 0.00 0.00 2.92
7 8 0.312102 TGATAGCTGAGCGACCGATG 59.688 55.000 0.00 0.00 0.00 3.84
8 9 0.312416 GTGATAGCTGAGCGACCGAT 59.688 55.000 0.00 0.00 0.00 4.18
9 10 1.029947 TGTGATAGCTGAGCGACCGA 61.030 55.000 0.00 0.00 0.00 4.69
10 11 0.179137 TTGTGATAGCTGAGCGACCG 60.179 55.000 0.00 0.00 0.00 4.79
11 12 1.135139 TCTTGTGATAGCTGAGCGACC 59.865 52.381 0.00 0.00 0.00 4.79
13 14 1.202188 CGTCTTGTGATAGCTGAGCGA 60.202 52.381 0.00 0.00 0.00 4.93
14 15 1.195347 CGTCTTGTGATAGCTGAGCG 58.805 55.000 0.00 0.00 0.00 5.03
15 16 2.189342 GACGTCTTGTGATAGCTGAGC 58.811 52.381 8.70 0.00 0.00 4.26
16 17 3.494045 TGACGTCTTGTGATAGCTGAG 57.506 47.619 17.92 0.00 0.00 3.35
17 18 3.005367 TGTTGACGTCTTGTGATAGCTGA 59.995 43.478 17.92 0.00 0.00 4.26
18 19 3.317150 TGTTGACGTCTTGTGATAGCTG 58.683 45.455 17.92 0.00 0.00 4.24
19 20 3.660501 TGTTGACGTCTTGTGATAGCT 57.339 42.857 17.92 0.00 0.00 3.32
20 21 3.987868 TCTTGTTGACGTCTTGTGATAGC 59.012 43.478 17.92 0.00 0.00 2.97
21 22 5.502214 GTCTTGTTGACGTCTTGTGATAG 57.498 43.478 17.92 5.35 35.81 2.08
183 186 7.194278 TGAACGCTATCACTGTTTAGACTATC 58.806 38.462 0.02 0.00 0.00 2.08
318 328 9.472361 TCTATGCTTTAAACTCGAATATGTACC 57.528 33.333 0.00 0.00 0.00 3.34
391 412 3.785325 TGGAGTCCATGGAATGTATTGGA 59.215 43.478 21.47 0.00 44.81 3.53
411 435 7.198390 CAGCAGTGTGATAAGGAATTTAATGG 58.802 38.462 0.00 0.00 0.00 3.16
510 534 0.036483 TTTGCTGCAGCGGTGAGATA 60.036 50.000 32.11 10.70 45.83 1.98
595 619 3.808265 GCCCAGAGCATGATAACTGCATA 60.808 47.826 0.00 0.00 42.15 3.14
704 728 4.381825 GCATTGCATTGATGGTTCCACTAA 60.382 41.667 12.66 0.00 0.00 2.24
1068 1103 4.202010 GCAGGCATCCGTAATGTTATTGTT 60.202 41.667 0.00 0.00 37.71 2.83
1069 1104 3.315191 GCAGGCATCCGTAATGTTATTGT 59.685 43.478 0.00 0.00 37.71 2.71
1205 1243 7.353414 TGGTGTCCAAAATAAATTGACTCAA 57.647 32.000 0.00 0.00 31.84 3.02
1208 1246 8.193953 AGAATGGTGTCCAAAATAAATTGACT 57.806 30.769 0.00 0.00 36.95 3.41
1287 1326 6.708949 AGCTTGTCGGAAGATTTAAAACAGTA 59.291 34.615 0.00 0.00 45.19 2.74
1378 1420 7.540474 ACTTAGAGACTGTATGTCCTTGAAA 57.460 36.000 0.00 0.00 46.46 2.69
1511 1633 5.461327 AGCAATCTGGGAATGGTCAATTAT 58.539 37.500 0.00 0.00 0.00 1.28
1565 1688 3.828875 TTTTTGGTAGGGCAAACTTGG 57.171 42.857 0.00 0.00 0.00 3.61
1622 1745 6.426328 ACACTCTAAAAGACTGAAGCAATCTG 59.574 38.462 0.00 0.00 0.00 2.90
1731 1854 6.128742 GCTGTTCATTTTTCTAGCCAATGTTG 60.129 38.462 7.72 0.00 31.08 3.33
1755 1878 0.952010 CCAACCTTTTGGCATGCTGC 60.952 55.000 18.92 1.78 46.09 5.25
2167 3318 5.551760 ACTACAAATGCAGTTACAGATGC 57.448 39.130 12.30 0.00 42.86 3.91
2176 3327 7.275888 TCAATGAAAGAACTACAAATGCAGT 57.724 32.000 0.00 0.00 0.00 4.40
2510 3661 0.540597 GGAGCAAAAGCCCAAGAGGT 60.541 55.000 0.00 0.00 38.26 3.85
2793 3944 1.108727 TGCTTTGGTCCCTTGCACAG 61.109 55.000 0.00 0.00 0.00 3.66
2871 4022 2.500098 TGATACTCCTCCAAAGTTCCGG 59.500 50.000 0.00 0.00 0.00 5.14
2901 4052 4.949238 AGCATGCCAAAACTGTATACATCA 59.051 37.500 15.66 0.00 0.00 3.07
2931 4082 2.307098 CCTCCTTCCACTCACCATTTCT 59.693 50.000 0.00 0.00 0.00 2.52
2972 4123 2.166664 AGGTAGACATCGTTCTGGCTTC 59.833 50.000 0.00 0.00 35.61 3.86
2973 4124 2.166664 GAGGTAGACATCGTTCTGGCTT 59.833 50.000 0.00 0.00 35.61 4.35
2975 4126 1.202428 GGAGGTAGACATCGTTCTGGC 60.202 57.143 0.00 0.00 0.00 4.85
3033 4184 4.156008 GCCATGTCCAAAGTAACTACCAAG 59.844 45.833 0.00 0.00 0.00 3.61
3051 4202 5.458041 TTTCTTTCTTTTCCTCTGCCATG 57.542 39.130 0.00 0.00 0.00 3.66
3055 4206 5.067805 TCACCTTTTCTTTCTTTTCCTCTGC 59.932 40.000 0.00 0.00 0.00 4.26
3059 4210 6.187682 TGTCTCACCTTTTCTTTCTTTTCCT 58.812 36.000 0.00 0.00 0.00 3.36
3060 4211 6.451064 TGTCTCACCTTTTCTTTCTTTTCC 57.549 37.500 0.00 0.00 0.00 3.13
3064 4215 6.261158 GCTAGTTGTCTCACCTTTTCTTTCTT 59.739 38.462 0.00 0.00 0.00 2.52
3066 4217 5.049336 GGCTAGTTGTCTCACCTTTTCTTTC 60.049 44.000 0.00 0.00 0.00 2.62
3142 4293 5.086058 CGTTAACATGTGTATCACCTTTGC 58.914 41.667 0.00 0.00 32.73 3.68
3151 4302 2.841881 ACCTCCCCGTTAACATGTGTAT 59.158 45.455 0.00 0.00 0.00 2.29
3154 4305 1.810151 CAACCTCCCCGTTAACATGTG 59.190 52.381 0.00 0.00 0.00 3.21
3201 4352 5.707298 AGGATGATTTTCAGACGACACAAAT 59.293 36.000 0.00 0.00 0.00 2.32
3227 4378 4.406069 CATGTTCTCCGTGCTTTATGTTG 58.594 43.478 0.00 0.00 0.00 3.33
3270 4421 2.033174 TGCATTGCTGTACAACACACAG 59.967 45.455 10.49 0.00 45.08 3.66
3280 4450 3.494924 CCCTAGTGCTATGCATTGCTGTA 60.495 47.826 28.73 19.59 41.91 2.74
3302 4478 6.672147 ACAGAAAGATGAAAATACACTGCAC 58.328 36.000 0.00 0.00 0.00 4.57
3315 4491 7.044181 CAGGTGCTAATAGAACAGAAAGATGA 58.956 38.462 0.18 0.00 0.00 2.92
3324 4500 7.791029 TCATACAATCAGGTGCTAATAGAACA 58.209 34.615 0.18 0.00 0.00 3.18
3325 4501 8.662781 TTCATACAATCAGGTGCTAATAGAAC 57.337 34.615 0.00 0.00 0.00 3.01
3406 4591 5.122396 ACAGTCCAAATAAAGTTCGATCTGC 59.878 40.000 0.00 0.00 0.00 4.26
3446 4631 4.036380 ACAAGGTAAGCAACAAACTACTGC 59.964 41.667 0.00 0.00 36.29 4.40
3451 4636 4.461081 TCACAACAAGGTAAGCAACAAACT 59.539 37.500 0.00 0.00 0.00 2.66
3477 4662 6.485984 ACTGCAGGAAATATAAATCAGCAGAG 59.514 38.462 24.87 12.37 43.24 3.35
3480 4665 5.221106 GCACTGCAGGAAATATAAATCAGCA 60.221 40.000 19.93 0.00 0.00 4.41
3504 4701 2.441001 AGGAGCCCAGTGAGGAATAATG 59.559 50.000 0.00 0.00 41.22 1.90
3508 4705 0.252881 TGAGGAGCCCAGTGAGGAAT 60.253 55.000 0.00 0.00 41.22 3.01
3509 4706 0.906756 CTGAGGAGCCCAGTGAGGAA 60.907 60.000 0.00 0.00 41.22 3.36
3517 4714 1.059584 TGTGTTTCCTGAGGAGCCCA 61.060 55.000 0.00 0.00 31.21 5.36
3519 4716 2.206576 ATTGTGTTTCCTGAGGAGCC 57.793 50.000 0.00 0.00 31.21 4.70
3520 4717 4.072131 TGTAATTGTGTTTCCTGAGGAGC 58.928 43.478 0.00 0.00 31.21 4.70
3523 4768 3.506067 GGGTGTAATTGTGTTTCCTGAGG 59.494 47.826 0.00 0.00 0.00 3.86
3526 4771 5.068460 TCAAAGGGTGTAATTGTGTTTCCTG 59.932 40.000 0.00 0.00 0.00 3.86
3535 4780 4.021192 AGTGGCAATCAAAGGGTGTAATTG 60.021 41.667 0.00 0.00 0.00 2.32
3536 4781 4.159557 AGTGGCAATCAAAGGGTGTAATT 58.840 39.130 0.00 0.00 0.00 1.40
3542 4787 1.632589 GGAAGTGGCAATCAAAGGGT 58.367 50.000 0.00 0.00 0.00 4.34
3557 4802 4.033358 GTGATATTCTCAGCACAACGGAAG 59.967 45.833 0.00 0.00 33.51 3.46
3561 4806 4.926860 TTGTGATATTCTCAGCACAACG 57.073 40.909 0.00 0.00 43.79 4.10
3563 4808 5.939296 TGATGTTGTGATATTCTCAGCACAA 59.061 36.000 0.00 0.00 45.69 3.33
3564 4809 5.490159 TGATGTTGTGATATTCTCAGCACA 58.510 37.500 0.00 0.00 34.80 4.57
3566 4811 7.052248 AGAATGATGTTGTGATATTCTCAGCA 58.948 34.615 0.00 0.00 36.02 4.41
3567 4812 7.493743 AGAATGATGTTGTGATATTCTCAGC 57.506 36.000 0.00 0.00 34.03 4.26
3568 4813 9.538508 TGTAGAATGATGTTGTGATATTCTCAG 57.461 33.333 0.00 0.00 38.58 3.35
3569 4814 9.538508 CTGTAGAATGATGTTGTGATATTCTCA 57.461 33.333 0.00 0.00 38.58 3.27
3570 4815 8.986847 CCTGTAGAATGATGTTGTGATATTCTC 58.013 37.037 0.00 0.00 38.58 2.87
3571 4816 8.489489 ACCTGTAGAATGATGTTGTGATATTCT 58.511 33.333 0.00 0.00 40.22 2.40
3572 4817 8.668510 ACCTGTAGAATGATGTTGTGATATTC 57.331 34.615 0.00 0.00 0.00 1.75
3576 4821 5.105351 TCGACCTGTAGAATGATGTTGTGAT 60.105 40.000 0.00 0.00 0.00 3.06
3577 4822 4.219725 TCGACCTGTAGAATGATGTTGTGA 59.780 41.667 0.00 0.00 0.00 3.58
3578 4823 4.327357 GTCGACCTGTAGAATGATGTTGTG 59.673 45.833 3.51 0.00 0.00 3.33
3582 4827 6.321435 TGATTAGTCGACCTGTAGAATGATGT 59.679 38.462 13.01 0.00 0.00 3.06
3583 4828 6.739112 TGATTAGTCGACCTGTAGAATGATG 58.261 40.000 13.01 0.00 0.00 3.07
3584 4829 6.961360 TGATTAGTCGACCTGTAGAATGAT 57.039 37.500 13.01 0.00 0.00 2.45
3585 4830 6.735968 GCATGATTAGTCGACCTGTAGAATGA 60.736 42.308 13.01 0.00 0.00 2.57
3586 4831 5.403766 GCATGATTAGTCGACCTGTAGAATG 59.596 44.000 13.01 9.07 0.00 2.67
3587 4832 5.509840 GGCATGATTAGTCGACCTGTAGAAT 60.510 44.000 13.01 2.74 0.00 2.40
3588 4833 4.202121 GGCATGATTAGTCGACCTGTAGAA 60.202 45.833 13.01 0.00 0.00 2.10
3589 4834 3.318275 GGCATGATTAGTCGACCTGTAGA 59.682 47.826 13.01 0.00 0.00 2.59
3590 4835 3.068165 TGGCATGATTAGTCGACCTGTAG 59.932 47.826 13.01 0.00 0.00 2.74
3591 4836 3.028130 TGGCATGATTAGTCGACCTGTA 58.972 45.455 13.01 0.00 0.00 2.74
3592 4837 1.831106 TGGCATGATTAGTCGACCTGT 59.169 47.619 13.01 0.00 0.00 4.00
3593 4838 2.602257 TGGCATGATTAGTCGACCTG 57.398 50.000 13.01 1.96 0.00 4.00
3594 4839 2.435805 ACATGGCATGATTAGTCGACCT 59.564 45.455 32.74 3.68 0.00 3.85
3595 4840 2.838736 ACATGGCATGATTAGTCGACC 58.161 47.619 32.74 0.00 0.00 4.79
3596 4841 3.248602 GGAACATGGCATGATTAGTCGAC 59.751 47.826 32.74 7.70 0.00 4.20
3597 4842 3.134623 AGGAACATGGCATGATTAGTCGA 59.865 43.478 32.74 0.00 0.00 4.20
3598 4843 3.470709 AGGAACATGGCATGATTAGTCG 58.529 45.455 32.74 5.02 0.00 4.18
3599 4844 4.883585 TGAAGGAACATGGCATGATTAGTC 59.116 41.667 32.74 21.63 0.00 2.59
3600 4845 4.858850 TGAAGGAACATGGCATGATTAGT 58.141 39.130 32.74 14.82 0.00 2.24
3601 4846 5.840243 TTGAAGGAACATGGCATGATTAG 57.160 39.130 32.74 7.37 0.00 1.73
3602 4847 6.608405 AGATTTGAAGGAACATGGCATGATTA 59.392 34.615 32.74 9.37 0.00 1.75
3603 4848 5.424252 AGATTTGAAGGAACATGGCATGATT 59.576 36.000 32.74 21.67 0.00 2.57
3604 4849 4.960469 AGATTTGAAGGAACATGGCATGAT 59.040 37.500 32.74 22.34 0.00 2.45
3605 4850 4.346730 AGATTTGAAGGAACATGGCATGA 58.653 39.130 32.74 8.31 0.00 3.07
3606 4851 4.158949 TGAGATTTGAAGGAACATGGCATG 59.841 41.667 25.31 25.31 0.00 4.06
3607 4852 4.346730 TGAGATTTGAAGGAACATGGCAT 58.653 39.130 0.00 0.00 0.00 4.40
3612 4857 4.660168 ACTGCTGAGATTTGAAGGAACAT 58.340 39.130 0.00 0.00 0.00 2.71
3621 4866 3.311871 GTGCTATGGACTGCTGAGATTTG 59.688 47.826 0.00 0.00 0.00 2.32
3629 4874 0.387202 CGCTAGTGCTATGGACTGCT 59.613 55.000 2.05 0.00 36.97 4.24
3633 4878 0.744874 TCCACGCTAGTGCTATGGAC 59.255 55.000 9.45 0.00 46.62 4.02
3648 4893 4.515567 GGGGAAGATCGAAACATATTCCAC 59.484 45.833 11.20 4.85 43.38 4.02
3661 4906 1.067495 GCTAATCGAGGGGGAAGATCG 60.067 57.143 0.00 0.00 37.79 3.69
3664 4909 1.120530 GTGCTAATCGAGGGGGAAGA 58.879 55.000 0.00 0.00 0.00 2.87
3675 4920 0.107508 TCAGCTGGCAGGTGCTAATC 60.108 55.000 35.28 8.96 43.02 1.75
3677 4926 1.003355 GTCAGCTGGCAGGTGCTAA 60.003 57.895 35.28 20.03 43.02 3.09
3681 4930 2.359602 CAGGTCAGCTGGCAGGTG 60.360 66.667 34.59 34.59 44.57 4.00
3686 4935 2.113860 TTATTCACAGGTCAGCTGGC 57.886 50.000 15.13 13.00 0.00 4.85
3690 4939 4.507710 TGACTGATTATTCACAGGTCAGC 58.492 43.478 0.00 0.00 39.83 4.26
3695 4944 4.987285 CGGAGATGACTGATTATTCACAGG 59.013 45.833 0.00 0.00 38.30 4.00
3696 4945 5.461407 CACGGAGATGACTGATTATTCACAG 59.539 44.000 0.00 0.00 39.65 3.66
3697 4946 5.105351 ACACGGAGATGACTGATTATTCACA 60.105 40.000 0.00 0.00 0.00 3.58
3698 4947 5.233050 CACACGGAGATGACTGATTATTCAC 59.767 44.000 0.00 0.00 0.00 3.18
3704 4953 4.646945 ACTATCACACGGAGATGACTGATT 59.353 41.667 0.00 0.00 0.00 2.57
3705 4954 4.211125 ACTATCACACGGAGATGACTGAT 58.789 43.478 0.00 0.00 0.00 2.90
3707 4956 4.335594 TGTACTATCACACGGAGATGACTG 59.664 45.833 0.00 0.00 0.00 3.51
3708 4957 4.335874 GTGTACTATCACACGGAGATGACT 59.664 45.833 0.00 0.00 39.47 3.41
3709 4958 4.599047 GTGTACTATCACACGGAGATGAC 58.401 47.826 0.00 0.00 39.47 3.06
3710 4959 4.895224 GTGTACTATCACACGGAGATGA 57.105 45.455 0.00 0.00 39.47 2.92
3719 4968 7.489160 CAAATAGCTACCAGTGTACTATCACA 58.511 38.462 0.00 0.00 40.37 3.58
3720 4969 6.421202 GCAAATAGCTACCAGTGTACTATCAC 59.579 42.308 0.00 0.00 41.15 3.06
3721 4970 6.097696 TGCAAATAGCTACCAGTGTACTATCA 59.902 38.462 0.00 0.00 45.94 2.15
3722 4971 6.513180 TGCAAATAGCTACCAGTGTACTATC 58.487 40.000 0.00 0.00 45.94 2.08
3723 4972 6.479972 TGCAAATAGCTACCAGTGTACTAT 57.520 37.500 0.00 0.00 45.94 2.12
3724 4973 5.681437 GCTGCAAATAGCTACCAGTGTACTA 60.681 44.000 0.00 0.00 45.94 1.82
3725 4974 4.759782 CTGCAAATAGCTACCAGTGTACT 58.240 43.478 0.00 0.00 45.94 2.73
3726 4975 3.309954 GCTGCAAATAGCTACCAGTGTAC 59.690 47.826 0.00 0.00 45.94 2.90
3727 4976 3.055458 TGCTGCAAATAGCTACCAGTGTA 60.055 43.478 0.00 0.00 45.94 2.90
3728 4977 2.290260 TGCTGCAAATAGCTACCAGTGT 60.290 45.455 0.00 0.00 45.94 3.55
3729 4978 2.358957 TGCTGCAAATAGCTACCAGTG 58.641 47.619 0.00 0.00 45.94 3.66
3733 4982 3.372206 CCGATATGCTGCAAATAGCTACC 59.628 47.826 6.36 0.00 45.94 3.18
3745 4994 1.875514 CCATGTGGTTCCGATATGCTG 59.124 52.381 0.00 0.00 0.00 4.41
3752 5001 1.271856 TAAGCTCCATGTGGTTCCGA 58.728 50.000 0.00 0.00 36.34 4.55
3758 5007 4.996122 TGCAAAAATTTAAGCTCCATGTGG 59.004 37.500 13.76 0.00 0.00 4.17
3761 5010 7.024768 CCAAATGCAAAAATTTAAGCTCCATG 58.975 34.615 13.76 8.71 0.00 3.66
3771 5020 8.734386 TGTTAAACTGTCCAAATGCAAAAATTT 58.266 25.926 0.00 0.00 0.00 1.82
3773 5022 7.856145 TGTTAAACTGTCCAAATGCAAAAAT 57.144 28.000 0.00 0.00 0.00 1.82
3785 5034 5.957842 TGTGATTCCATGTTAAACTGTCC 57.042 39.130 0.00 0.00 0.00 4.02
3790 5039 5.126061 AGCTCCATGTGATTCCATGTTAAAC 59.874 40.000 11.65 0.00 40.50 2.01
3798 5047 5.591472 CAGAATAAAGCTCCATGTGATTCCA 59.409 40.000 0.00 0.00 0.00 3.53
3799 5048 5.506982 GCAGAATAAAGCTCCATGTGATTCC 60.507 44.000 0.00 0.00 0.00 3.01
3800 5049 5.517904 GCAGAATAAAGCTCCATGTGATTC 58.482 41.667 0.00 0.00 0.00 2.52
3803 5052 2.938451 CGCAGAATAAAGCTCCATGTGA 59.062 45.455 0.00 0.00 0.00 3.58
3804 5053 2.032550 CCGCAGAATAAAGCTCCATGTG 59.967 50.000 0.00 0.00 0.00 3.21
3805 5054 2.092968 TCCGCAGAATAAAGCTCCATGT 60.093 45.455 0.00 0.00 0.00 3.21
3806 5055 2.564771 TCCGCAGAATAAAGCTCCATG 58.435 47.619 0.00 0.00 0.00 3.66
3825 5074 5.810587 TGTAGAAAATACTGAAGCGTGGATC 59.189 40.000 0.00 0.00 0.00 3.36
3826 5075 5.730550 TGTAGAAAATACTGAAGCGTGGAT 58.269 37.500 0.00 0.00 0.00 3.41
3838 5087 8.209917 ACGGAGGAATGAATTGTAGAAAATAC 57.790 34.615 0.00 0.00 0.00 1.89
3846 5095 4.647611 ACACAACGGAGGAATGAATTGTA 58.352 39.130 0.00 0.00 0.00 2.41
3848 5097 4.695455 ACTACACAACGGAGGAATGAATTG 59.305 41.667 0.00 0.00 0.00 2.32
3849 5098 4.695455 CACTACACAACGGAGGAATGAATT 59.305 41.667 0.00 0.00 0.00 2.17
3850 5099 4.253685 CACTACACAACGGAGGAATGAAT 58.746 43.478 0.00 0.00 0.00 2.57
3852 5101 2.631062 ACACTACACAACGGAGGAATGA 59.369 45.455 0.00 0.00 0.00 2.57
3859 5108 2.489329 GGCTACTACACTACACAACGGA 59.511 50.000 0.00 0.00 0.00 4.69
3860 5109 2.229543 TGGCTACTACACTACACAACGG 59.770 50.000 0.00 0.00 0.00 4.44
3861 5110 3.564235 TGGCTACTACACTACACAACG 57.436 47.619 0.00 0.00 0.00 4.10
3862 5111 5.350640 GGAAATGGCTACTACACTACACAAC 59.649 44.000 0.00 0.00 0.00 3.32
3863 5112 5.247564 AGGAAATGGCTACTACACTACACAA 59.752 40.000 0.00 0.00 0.00 3.33
3864 5113 4.775780 AGGAAATGGCTACTACACTACACA 59.224 41.667 0.00 0.00 0.00 3.72
3867 5116 5.731591 ACAAGGAAATGGCTACTACACTAC 58.268 41.667 0.00 0.00 0.00 2.73
3868 5117 5.720041 AGACAAGGAAATGGCTACTACACTA 59.280 40.000 0.00 0.00 36.73 2.74
3869 5118 4.532521 AGACAAGGAAATGGCTACTACACT 59.467 41.667 0.00 0.00 36.73 3.55
3870 5119 4.631813 CAGACAAGGAAATGGCTACTACAC 59.368 45.833 0.00 0.00 36.18 2.90
3871 5120 4.530553 TCAGACAAGGAAATGGCTACTACA 59.469 41.667 0.00 0.00 36.18 2.74
3872 5121 5.086104 TCAGACAAGGAAATGGCTACTAC 57.914 43.478 0.00 0.00 36.18 2.73
3873 5122 5.755409 TTCAGACAAGGAAATGGCTACTA 57.245 39.130 0.00 0.00 36.18 1.82
3874 5123 4.640771 TTCAGACAAGGAAATGGCTACT 57.359 40.909 0.00 0.00 36.18 2.57
3875 5124 4.943705 TGATTCAGACAAGGAAATGGCTAC 59.056 41.667 0.00 0.00 36.18 3.58
3877 5126 3.760684 GTGATTCAGACAAGGAAATGGCT 59.239 43.478 0.00 0.00 40.05 4.75
3878 5127 3.507233 TGTGATTCAGACAAGGAAATGGC 59.493 43.478 0.00 0.00 0.00 4.40
3880 5129 7.819644 TGTATTGTGATTCAGACAAGGAAATG 58.180 34.615 0.00 0.00 36.77 2.32
3881 5130 7.884877 TCTGTATTGTGATTCAGACAAGGAAAT 59.115 33.333 0.00 0.00 35.53 2.17
3882 5131 7.223584 TCTGTATTGTGATTCAGACAAGGAAA 58.776 34.615 0.00 0.00 35.53 3.13
3884 5133 6.211384 TCTCTGTATTGTGATTCAGACAAGGA 59.789 38.462 0.00 0.00 35.53 3.36
3886 5135 9.029243 GTATCTCTGTATTGTGATTCAGACAAG 57.971 37.037 0.00 0.00 35.53 3.16
3888 5137 8.193438 CAGTATCTCTGTATTGTGATTCAGACA 58.807 37.037 0.00 0.00 35.53 3.41
3889 5138 8.572828 CAGTATCTCTGTATTGTGATTCAGAC 57.427 38.462 0.00 0.00 35.53 3.51
3905 5154 6.428295 AGAGCTTACACCTTACAGTATCTCT 58.572 40.000 0.00 0.00 31.53 3.10
3906 5155 6.702716 AGAGCTTACACCTTACAGTATCTC 57.297 41.667 0.00 0.00 0.00 2.75
3907 5156 7.363968 GGAAAGAGCTTACACCTTACAGTATCT 60.364 40.741 0.00 0.00 0.00 1.98
3908 5157 6.757478 GGAAAGAGCTTACACCTTACAGTATC 59.243 42.308 0.00 0.00 0.00 2.24
3910 5159 5.541101 TGGAAAGAGCTTACACCTTACAGTA 59.459 40.000 0.00 0.00 0.00 2.74
3911 5160 4.347000 TGGAAAGAGCTTACACCTTACAGT 59.653 41.667 0.00 0.00 0.00 3.55
3912 5161 4.894784 TGGAAAGAGCTTACACCTTACAG 58.105 43.478 0.00 0.00 0.00 2.74
3914 5163 6.877322 TGTATTGGAAAGAGCTTACACCTTAC 59.123 38.462 0.00 0.00 0.00 2.34
3915 5164 7.011499 TGTATTGGAAAGAGCTTACACCTTA 57.989 36.000 0.00 0.00 0.00 2.69
3916 5165 5.876357 TGTATTGGAAAGAGCTTACACCTT 58.124 37.500 0.00 0.00 0.00 3.50
3917 5166 5.248477 TCTGTATTGGAAAGAGCTTACACCT 59.752 40.000 0.00 0.00 0.00 4.00
3918 5167 5.488341 TCTGTATTGGAAAGAGCTTACACC 58.512 41.667 0.00 0.00 0.00 4.16
3919 5168 6.398918 TCTCTGTATTGGAAAGAGCTTACAC 58.601 40.000 0.00 0.00 37.86 2.90
3920 5169 6.605471 TCTCTGTATTGGAAAGAGCTTACA 57.395 37.500 0.00 0.00 37.86 2.41
3933 5194 3.558746 GGGATCTGGGCATCTCTGTATTG 60.559 52.174 0.00 0.00 0.00 1.90
3936 5197 1.722034 GGGATCTGGGCATCTCTGTA 58.278 55.000 0.00 0.00 0.00 2.74
3947 5208 5.960811 TCTAGAATATAAGCAGGGGATCTGG 59.039 44.000 0.00 0.00 43.54 3.86
3948 5209 7.487822 TTCTAGAATATAAGCAGGGGATCTG 57.512 40.000 0.00 0.00 46.03 2.90
3949 5210 8.511748 TTTTCTAGAATATAAGCAGGGGATCT 57.488 34.615 5.89 0.00 0.00 2.75
3950 5211 9.225436 CTTTTTCTAGAATATAAGCAGGGGATC 57.775 37.037 5.89 0.00 0.00 3.36
3951 5212 8.949421 TCTTTTTCTAGAATATAAGCAGGGGAT 58.051 33.333 5.89 0.00 0.00 3.85
3952 5213 8.331931 TCTTTTTCTAGAATATAAGCAGGGGA 57.668 34.615 5.89 0.00 0.00 4.81
3953 5214 8.432805 TCTCTTTTTCTAGAATATAAGCAGGGG 58.567 37.037 5.89 1.56 0.00 4.79
3954 5215 9.487790 CTCTCTTTTTCTAGAATATAAGCAGGG 57.512 37.037 5.89 6.69 0.00 4.45
3981 5243 6.483307 GCAGTGGCATGATTAGTTACAGAATA 59.517 38.462 0.00 0.00 40.72 1.75
3984 5246 4.191544 GCAGTGGCATGATTAGTTACAGA 58.808 43.478 0.00 0.00 40.72 3.41
3985 5247 4.542662 GCAGTGGCATGATTAGTTACAG 57.457 45.455 0.00 0.00 40.72 2.74
4003 5265 3.120321 TGGTACTTGTAACTGGTGCAG 57.880 47.619 0.00 0.00 37.52 4.41
4016 5278 5.420739 TGCTCTTCCTTTGTTTTTGGTACTT 59.579 36.000 0.00 0.00 0.00 2.24
4018 5280 5.257082 TGCTCTTCCTTTGTTTTTGGTAC 57.743 39.130 0.00 0.00 0.00 3.34
4019 5281 5.163457 CCTTGCTCTTCCTTTGTTTTTGGTA 60.163 40.000 0.00 0.00 0.00 3.25
4021 5283 4.122046 CCTTGCTCTTCCTTTGTTTTTGG 58.878 43.478 0.00 0.00 0.00 3.28
4022 5284 4.122046 CCCTTGCTCTTCCTTTGTTTTTG 58.878 43.478 0.00 0.00 0.00 2.44
4026 5288 1.499007 TCCCCTTGCTCTTCCTTTGTT 59.501 47.619 0.00 0.00 0.00 2.83
4028 5290 2.521547 ATCCCCTTGCTCTTCCTTTG 57.478 50.000 0.00 0.00 0.00 2.77
4030 5292 3.193782 AGTAATCCCCTTGCTCTTCCTT 58.806 45.455 0.00 0.00 0.00 3.36
4031 5293 2.774809 GAGTAATCCCCTTGCTCTTCCT 59.225 50.000 0.00 0.00 41.76 3.36
4032 5294 2.505819 TGAGTAATCCCCTTGCTCTTCC 59.494 50.000 5.00 0.00 44.36 3.46
4035 5297 2.551270 TGTGAGTAATCCCCTTGCTCT 58.449 47.619 5.00 0.00 44.36 4.09
4036 5298 3.350219 TTGTGAGTAATCCCCTTGCTC 57.650 47.619 0.00 0.00 44.32 4.26
4038 5300 2.099756 GCATTGTGAGTAATCCCCTTGC 59.900 50.000 0.00 0.00 0.00 4.01
4039 5301 2.689983 GGCATTGTGAGTAATCCCCTTG 59.310 50.000 0.00 0.00 0.00 3.61
4040 5302 2.311542 TGGCATTGTGAGTAATCCCCTT 59.688 45.455 0.00 0.00 0.00 3.95
4044 5306 2.035066 GCCATGGCATTGTGAGTAATCC 59.965 50.000 32.08 0.00 41.49 3.01
4059 5321 1.451567 CAGGAGCTGTCTGCCATGG 60.452 63.158 7.63 7.63 44.23 3.66
4102 5369 2.203351 CCGCTAAGGCCCCCAATC 60.203 66.667 0.00 0.00 34.44 2.67
4104 5371 3.407967 CTCCGCTAAGGCCCCCAA 61.408 66.667 0.00 0.00 40.77 4.12
4105 5372 4.408396 TCTCCGCTAAGGCCCCCA 62.408 66.667 0.00 0.00 40.77 4.96
4118 5385 2.128507 CCCAGTACTCGGCCTCTCC 61.129 68.421 0.00 0.00 0.00 3.71
4121 5388 2.579684 CTTGCCCAGTACTCGGCCTC 62.580 65.000 26.24 2.57 45.07 4.70
4122 5389 2.606519 TTGCCCAGTACTCGGCCT 60.607 61.111 26.24 0.00 45.07 5.19
4123 5390 2.125106 CTTGCCCAGTACTCGGCC 60.125 66.667 26.24 10.83 45.07 6.13
4124 5391 1.448013 GTCTTGCCCAGTACTCGGC 60.448 63.158 23.22 23.22 45.92 5.54
4125 5392 1.153823 CGTCTTGCCCAGTACTCGG 60.154 63.158 1.50 1.50 0.00 4.63
4126 5393 0.179161 CTCGTCTTGCCCAGTACTCG 60.179 60.000 0.00 0.00 0.00 4.18
4127 5394 0.173708 CCTCGTCTTGCCCAGTACTC 59.826 60.000 0.00 0.00 0.00 2.59
4128 5395 0.251653 TCCTCGTCTTGCCCAGTACT 60.252 55.000 0.00 0.00 0.00 2.73
4129 5396 0.173708 CTCCTCGTCTTGCCCAGTAC 59.826 60.000 0.00 0.00 0.00 2.73
4130 5397 1.605058 GCTCCTCGTCTTGCCCAGTA 61.605 60.000 0.00 0.00 0.00 2.74
4131 5398 2.948720 GCTCCTCGTCTTGCCCAGT 61.949 63.158 0.00 0.00 0.00 4.00
4132 5399 2.125350 GCTCCTCGTCTTGCCCAG 60.125 66.667 0.00 0.00 0.00 4.45
4133 5400 2.604686 AGCTCCTCGTCTTGCCCA 60.605 61.111 0.00 0.00 0.00 5.36
4134 5401 2.185608 GAGCTCCTCGTCTTGCCC 59.814 66.667 0.87 0.00 0.00 5.36
4176 5443 4.680237 TTCACGTGGGCAGCTCCG 62.680 66.667 17.00 1.97 34.94 4.63
4192 5459 4.736896 GAGCTCCGGCGTCCGTTT 62.737 66.667 15.38 0.67 46.80 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.