Multiple sequence alignment - TraesCS3A01G018100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G018100 chr3A 100.000 4280 0 0 1 4280 11412207 11407928 0.000000e+00 7904.0
1 TraesCS3A01G018100 chr3A 80.482 2695 382 82 611 3247 10826622 10824014 0.000000e+00 1930.0
2 TraesCS3A01G018100 chr3A 83.491 1793 232 37 1475 3244 11459161 11457410 0.000000e+00 1613.0
3 TraesCS3A01G018100 chr3A 87.741 1297 141 13 2156 3441 10952686 10951397 0.000000e+00 1498.0
4 TraesCS3A01G018100 chr3A 82.949 1214 181 19 2054 3247 11001149 10999942 0.000000e+00 1072.0
5 TraesCS3A01G018100 chr3A 84.980 253 33 3 4024 4276 10950648 10950401 7.100000e-63 252.0
6 TraesCS3A01G018100 chr3A 78.947 285 42 15 653 935 11468397 11468129 1.220000e-40 178.0
7 TraesCS3A01G018100 chr3A 92.500 120 9 0 3769 3888 10950896 10950777 5.690000e-39 172.0
8 TraesCS3A01G018100 chrUn 92.985 2680 132 7 600 3244 214331033 214328375 0.000000e+00 3856.0
9 TraesCS3A01G018100 chrUn 89.129 1297 130 8 2156 3450 238784744 238786031 0.000000e+00 1604.0
10 TraesCS3A01G018100 chrUn 89.129 1297 130 8 2156 3450 240351530 240350243 0.000000e+00 1604.0
11 TraesCS3A01G018100 chrUn 87.296 1409 151 22 2051 3441 36344401 36345799 0.000000e+00 1585.0
12 TraesCS3A01G018100 chrUn 87.340 1406 150 22 2054 3441 214890601 214889206 0.000000e+00 1585.0
13 TraesCS3A01G018100 chrUn 85.637 1288 175 9 2159 3445 296501493 296500215 0.000000e+00 1345.0
14 TraesCS3A01G018100 chrUn 90.792 619 34 18 1 598 267788263 267787647 0.000000e+00 806.0
15 TraesCS3A01G018100 chrUn 90.792 619 34 18 1 598 268799434 268800050 0.000000e+00 806.0
16 TraesCS3A01G018100 chrUn 87.500 248 27 2 4029 4276 238786470 238786713 2.520000e-72 283.0
17 TraesCS3A01G018100 chrUn 88.017 242 25 2 4035 4276 240349798 240349561 2.520000e-72 283.0
18 TraesCS3A01G018100 chrUn 87.603 242 26 2 4035 4276 260327155 260326918 1.170000e-70 278.0
19 TraesCS3A01G018100 chrUn 84.677 248 33 3 4029 4276 36346544 36346786 4.280000e-60 243.0
20 TraesCS3A01G018100 chrUn 85.124 242 31 3 4035 4276 214888455 214888219 4.280000e-60 243.0
21 TraesCS3A01G018100 chrUn 91.667 120 9 1 3769 3888 36346290 36346408 9.520000e-37 165.0
22 TraesCS3A01G018100 chrUn 91.667 120 9 1 3769 3888 214888715 214888597 9.520000e-37 165.0
23 TraesCS3A01G018100 chrUn 89.167 120 12 1 3769 3888 260327414 260327296 9.590000e-32 148.0
24 TraesCS3A01G018100 chrUn 100.000 34 0 0 3557 3590 36347205 36347238 3.570000e-06 63.9
25 TraesCS3A01G018100 chrUn 100.000 34 0 0 3557 3590 214887800 214887767 3.570000e-06 63.9
26 TraesCS3A01G018100 chrUn 100.000 34 0 0 3557 3590 260324910 260324877 3.570000e-06 63.9
27 TraesCS3A01G018100 chr3D 87.990 1557 168 13 2054 3595 5007152 5005600 0.000000e+00 1821.0
28 TraesCS3A01G018100 chr3D 88.185 1295 145 6 2156 3445 4967393 4966102 0.000000e+00 1537.0
29 TraesCS3A01G018100 chr3D 83.409 440 61 9 2 431 28329259 28329696 8.620000e-107 398.0
30 TraesCS3A01G018100 chr3D 85.920 348 27 11 3663 4002 5005512 5005179 6.810000e-93 351.0
31 TraesCS3A01G018100 chr3D 87.795 254 29 2 4029 4280 5005120 5004867 3.240000e-76 296.0
32 TraesCS3A01G018100 chr3B 86.694 248 32 1 4029 4276 13968004 13968250 1.520000e-69 274.0
33 TraesCS3A01G018100 chr3B 83.794 253 34 3 4024 4276 28365390 28365635 2.570000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G018100 chr3A 11407928 11412207 4279 True 7904.000000 7904 100.00000 1 4280 1 chr3A.!!$R3 4279
1 TraesCS3A01G018100 chr3A 10824014 10826622 2608 True 1930.000000 1930 80.48200 611 3247 1 chr3A.!!$R1 2636
2 TraesCS3A01G018100 chr3A 11457410 11459161 1751 True 1613.000000 1613 83.49100 1475 3244 1 chr3A.!!$R4 1769
3 TraesCS3A01G018100 chr3A 10999942 11001149 1207 True 1072.000000 1072 82.94900 2054 3247 1 chr3A.!!$R2 1193
4 TraesCS3A01G018100 chr3A 10950401 10952686 2285 True 640.666667 1498 88.40700 2156 4276 3 chr3A.!!$R6 2120
5 TraesCS3A01G018100 chrUn 214328375 214331033 2658 True 3856.000000 3856 92.98500 600 3244 1 chrUn.!!$R1 2644
6 TraesCS3A01G018100 chrUn 296500215 296501493 1278 True 1345.000000 1345 85.63700 2159 3445 1 chrUn.!!$R3 1286
7 TraesCS3A01G018100 chrUn 238784744 238786713 1969 False 943.500000 1604 88.31450 2156 4276 2 chrUn.!!$F3 2120
8 TraesCS3A01G018100 chrUn 240349561 240351530 1969 True 943.500000 1604 88.57300 2156 4276 2 chrUn.!!$R5 2120
9 TraesCS3A01G018100 chrUn 267787647 267788263 616 True 806.000000 806 90.79200 1 598 1 chrUn.!!$R2 597
10 TraesCS3A01G018100 chrUn 268799434 268800050 616 False 806.000000 806 90.79200 1 598 1 chrUn.!!$F1 597
11 TraesCS3A01G018100 chrUn 36344401 36347238 2837 False 514.225000 1585 90.91000 2051 4276 4 chrUn.!!$F2 2225
12 TraesCS3A01G018100 chrUn 214887767 214890601 2834 True 514.225000 1585 91.03275 2054 4276 4 chrUn.!!$R4 2222
13 TraesCS3A01G018100 chr3D 4966102 4967393 1291 True 1537.000000 1537 88.18500 2156 3445 1 chr3D.!!$R1 1289
14 TraesCS3A01G018100 chr3D 5004867 5007152 2285 True 822.666667 1821 87.23500 2054 4280 3 chr3D.!!$R2 2226

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 958 1.066645 CACTGTCATGTAGAGCCAGCA 60.067 52.381 6.72 0.0 0.00 4.41 F
1509 1610 1.068055 GCTTGCCTGAACACCAATGAG 60.068 52.381 0.00 0.0 0.00 2.90 F
2510 2623 0.036306 CGTTTAGTGGGGTTCTGCCT 59.964 55.000 0.00 0.0 37.43 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1825 1932 0.322906 AGAGCCCTAGCAGTTTTGGC 60.323 55.0 0.00 0.00 43.56 4.52 R
3169 3293 0.096454 GTGGTTTGCTTATCGTCGCC 59.904 55.0 0.00 0.00 0.00 5.54 R
3540 3921 0.031111 ATACAGGACAGGCTGGGCTA 60.031 55.0 20.34 0.99 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 5.945784 AGCAGCAGTGTGATAAGGAATTTAA 59.054 36.000 0.00 0.00 0.00 1.52
72 73 7.198390 CAGCAGTGTGATAAGGAATTTAATGG 58.802 38.462 0.00 0.00 0.00 3.16
82 83 5.732331 AGGAATTTAATGGAGTCCATGGA 57.268 39.130 25.51 11.44 44.40 3.41
132 134 5.033522 AGAAGGCAGGGAGTATAGAAAGTT 58.966 41.667 0.00 0.00 0.00 2.66
165 167 9.472361 TCTATGCTTTAAACTCGAATATGTACC 57.528 33.333 0.00 0.00 0.00 3.34
287 289 5.294306 TCTGGAAATGAATGAACGCTATCAC 59.706 40.000 0.00 0.00 30.82 3.06
300 302 7.194278 TGAACGCTATCACTGTTTAGACTATC 58.806 38.462 0.02 0.00 0.00 2.08
345 347 4.540715 CCCTCATTTTTCTCCAGCCTTAT 58.459 43.478 0.00 0.00 0.00 1.73
465 497 3.317150 TGTTGACGTCTTGTGATAGCTG 58.683 45.455 17.92 0.00 0.00 4.24
472 504 1.135139 TCTTGTGATAGCTGAGCGACC 59.865 52.381 0.00 0.00 0.00 4.79
484 516 1.478916 TGAGCGACCGATGAATGGTTA 59.521 47.619 0.00 0.00 40.63 2.85
485 517 1.859080 GAGCGACCGATGAATGGTTAC 59.141 52.381 0.00 0.00 40.63 2.50
486 518 1.206132 AGCGACCGATGAATGGTTACA 59.794 47.619 0.00 0.00 40.63 2.41
487 519 1.593006 GCGACCGATGAATGGTTACAG 59.407 52.381 0.00 0.00 40.63 2.74
488 520 1.593006 CGACCGATGAATGGTTACAGC 59.407 52.381 0.00 0.00 40.63 4.40
489 521 2.627945 GACCGATGAATGGTTACAGCA 58.372 47.619 0.00 0.00 40.63 4.41
490 522 2.351726 GACCGATGAATGGTTACAGCAC 59.648 50.000 0.00 0.00 40.63 4.40
491 523 1.327460 CCGATGAATGGTTACAGCACG 59.673 52.381 0.00 0.00 0.00 5.34
492 524 1.999735 CGATGAATGGTTACAGCACGT 59.000 47.619 0.00 0.00 0.00 4.49
493 525 2.029244 CGATGAATGGTTACAGCACGTC 59.971 50.000 0.00 0.00 0.00 4.34
494 526 2.535012 TGAATGGTTACAGCACGTCA 57.465 45.000 0.00 0.00 0.00 4.35
512 544 3.057526 CGTCACTGATTGTAGTCCAGTCA 60.058 47.826 0.00 0.00 38.93 3.41
554 586 5.070446 TCAGAGACGTATGGAAATGCCTAAT 59.930 40.000 0.00 0.00 37.63 1.73
801 844 2.069273 GGTCTGGAGTCAACAACATCG 58.931 52.381 0.00 0.00 0.00 3.84
899 944 4.883083 TCCTAGTCAACAACATCACTGTC 58.117 43.478 0.00 0.00 33.36 3.51
900 945 4.343814 TCCTAGTCAACAACATCACTGTCA 59.656 41.667 0.00 0.00 33.36 3.58
901 946 5.012046 TCCTAGTCAACAACATCACTGTCAT 59.988 40.000 0.00 0.00 33.36 3.06
902 947 5.121298 CCTAGTCAACAACATCACTGTCATG 59.879 44.000 0.00 0.00 33.36 3.07
903 948 4.454678 AGTCAACAACATCACTGTCATGT 58.545 39.130 0.00 0.00 35.94 3.21
904 949 5.610398 AGTCAACAACATCACTGTCATGTA 58.390 37.500 0.00 0.00 33.12 2.29
905 950 5.698089 AGTCAACAACATCACTGTCATGTAG 59.302 40.000 0.00 0.00 33.12 2.74
906 951 5.696270 GTCAACAACATCACTGTCATGTAGA 59.304 40.000 0.00 0.00 33.12 2.59
907 952 5.928264 TCAACAACATCACTGTCATGTAGAG 59.072 40.000 0.00 0.00 33.12 2.43
908 953 4.248859 ACAACATCACTGTCATGTAGAGC 58.751 43.478 0.00 0.00 33.12 4.09
909 954 3.533606 ACATCACTGTCATGTAGAGCC 57.466 47.619 0.00 0.00 32.48 4.70
910 955 2.833943 ACATCACTGTCATGTAGAGCCA 59.166 45.455 0.00 0.00 32.48 4.75
911 956 3.118847 ACATCACTGTCATGTAGAGCCAG 60.119 47.826 0.00 0.00 32.48 4.85
912 957 1.205655 TCACTGTCATGTAGAGCCAGC 59.794 52.381 6.72 0.00 0.00 4.85
913 958 1.066645 CACTGTCATGTAGAGCCAGCA 60.067 52.381 6.72 0.00 0.00 4.41
914 959 1.206610 ACTGTCATGTAGAGCCAGCAG 59.793 52.381 6.72 0.00 0.00 4.24
915 960 1.206610 CTGTCATGTAGAGCCAGCAGT 59.793 52.381 0.00 0.00 0.00 4.40
916 961 1.625315 TGTCATGTAGAGCCAGCAGTT 59.375 47.619 0.00 0.00 0.00 3.16
917 962 2.005451 GTCATGTAGAGCCAGCAGTTG 58.995 52.381 0.00 0.00 0.00 3.16
1113 1199 5.251764 CCTGATTGTCCTTCTTTCTCATGT 58.748 41.667 0.00 0.00 0.00 3.21
1148 1234 2.028476 ACGTCAGATTCCCATTTCGTCA 60.028 45.455 0.00 0.00 0.00 4.35
1192 1278 6.755141 GTGTGGTTATCAATCTTACGAGCTAA 59.245 38.462 0.00 0.00 0.00 3.09
1209 1295 3.038710 GCTAATTTGCAGCGATGCTAAC 58.961 45.455 27.55 9.65 36.40 2.34
1281 1367 7.731054 ACTACAATGATTCTACCTTCTGGATC 58.269 38.462 0.00 0.00 37.04 3.36
1340 1426 2.522436 ACGGTGGGTTCGTCCTCA 60.522 61.111 0.00 0.00 35.87 3.86
1488 1589 5.277857 ACAGTGGTATGTACAAGCCTATC 57.722 43.478 16.70 9.48 0.00 2.08
1509 1610 1.068055 GCTTGCCTGAACACCAATGAG 60.068 52.381 0.00 0.00 0.00 2.90
1649 1756 4.583907 TGCAGAAATTGTGAAGTCCATGAA 59.416 37.500 0.00 0.00 0.00 2.57
1674 1781 2.477863 CGGATTTGCTGTTCGATTTCCC 60.478 50.000 0.00 0.00 0.00 3.97
1689 1796 7.553504 TCGATTTCCCTTCAGATATTATGGA 57.446 36.000 0.00 0.00 0.00 3.41
1692 1799 7.310671 CGATTTCCCTTCAGATATTATGGAGGA 60.311 40.741 14.94 5.17 45.18 3.71
1754 1861 6.702329 AGATTAGGTGAGTTACAGGTCTTTG 58.298 40.000 0.00 0.00 0.00 2.77
1825 1932 5.755375 CCTGTGTATACTTGGCTATCTTGTG 59.245 44.000 4.17 0.00 0.00 3.33
1954 2062 3.244700 CGATAATTCTTCTGATGGGGGCT 60.245 47.826 0.00 0.00 0.00 5.19
2074 2182 2.227865 TGCCGGTACTTCAGAATTTTGC 59.772 45.455 1.90 0.00 0.00 3.68
2324 2437 2.230508 CTGCAGTCACAAGCCATTTCAT 59.769 45.455 5.25 0.00 0.00 2.57
2340 2453 5.009010 CCATTTCATACATAAGCTGGGTCAC 59.991 44.000 0.00 0.00 0.00 3.67
2510 2623 0.036306 CGTTTAGTGGGGTTCTGCCT 59.964 55.000 0.00 0.00 37.43 4.75
2688 2801 5.752472 CGAGATGCAGATTCTACACTTTGAT 59.248 40.000 0.00 0.00 0.00 2.57
2964 3079 1.211949 TCAAGCCAAGCATACTACCCC 59.788 52.381 0.00 0.00 0.00 4.95
3030 3154 4.424566 CCCGTTGCTGGCATGCAC 62.425 66.667 21.36 9.64 43.20 4.57
3090 3214 4.080751 TGCATCCAGATGAAGTCTCATGAA 60.081 41.667 11.81 0.00 42.60 2.57
3169 3293 2.785868 CCTTCCAGGCCATTCTTCG 58.214 57.895 5.01 0.00 0.00 3.79
3225 3349 1.927174 CCTTTGTTATCCGAGCTGACG 59.073 52.381 0.00 0.00 0.00 4.35
3285 3409 1.165270 CCCGGGTCATGTGAACTTTC 58.835 55.000 14.18 0.00 31.02 2.62
3321 3455 9.546909 CATGTAACAAAATCTAGCAGTTGTAAG 57.453 33.333 5.52 0.00 33.18 2.34
3504 3885 3.314080 TGCCCGTCTTTTGTAAGTCAAAG 59.686 43.478 0.00 0.00 45.14 2.77
3513 3894 8.795341 GTCTTTTGTAAGTCAAAGCTTTTGTAC 58.205 33.333 9.53 8.36 45.14 2.90
3538 3919 9.180678 ACGAACTAATTTTGCATTCTTTGTAAG 57.819 29.630 0.00 0.00 31.22 2.34
3540 3921 9.196552 GAACTAATTTTGCATTCTTTGTAAGCT 57.803 29.630 0.00 0.00 31.22 3.74
3612 4036 4.633126 CACCTGTCCTGTATTCTCAATGTG 59.367 45.833 0.00 0.00 0.00 3.21
3619 4043 5.013079 TCCTGTATTCTCAATGTGTGGACTT 59.987 40.000 0.00 0.00 0.00 3.01
3625 4049 3.390967 TCTCAATGTGTGGACTTTGGAGA 59.609 43.478 0.00 0.00 37.66 3.71
3643 4067 4.403752 TGGAGAGTTGAAGACGATGATGAT 59.596 41.667 0.00 0.00 0.00 2.45
3644 4068 5.594317 TGGAGAGTTGAAGACGATGATGATA 59.406 40.000 0.00 0.00 0.00 2.15
3648 4072 5.288015 AGTTGAAGACGATGATGATAGCTG 58.712 41.667 0.00 0.00 0.00 4.24
3649 4073 4.926140 TGAAGACGATGATGATAGCTGT 57.074 40.909 0.00 0.00 0.00 4.40
3651 4075 4.339247 TGAAGACGATGATGATAGCTGTGA 59.661 41.667 0.00 0.00 0.00 3.58
3653 4077 2.985809 GACGATGATGATAGCTGTGAGC 59.014 50.000 0.00 0.00 42.84 4.26
3654 4078 2.288702 ACGATGATGATAGCTGTGAGCC 60.289 50.000 0.00 0.00 43.77 4.70
3655 4079 2.029200 CGATGATGATAGCTGTGAGCCT 60.029 50.000 0.00 0.00 43.77 4.58
3657 4081 1.415289 TGATGATAGCTGTGAGCCTGG 59.585 52.381 0.00 0.00 43.77 4.45
3658 4082 1.415659 GATGATAGCTGTGAGCCTGGT 59.584 52.381 0.00 0.00 43.77 4.00
3660 4084 2.466846 TGATAGCTGTGAGCCTGGTTA 58.533 47.619 0.00 0.00 43.77 2.85
3661 4085 3.041211 TGATAGCTGTGAGCCTGGTTAT 58.959 45.455 0.00 0.00 43.77 1.89
3662 4086 2.988010 TAGCTGTGAGCCTGGTTATG 57.012 50.000 0.00 0.00 43.77 1.90
3663 4087 0.254178 AGCTGTGAGCCTGGTTATGG 59.746 55.000 0.00 0.00 43.77 2.74
3664 4088 0.253044 GCTGTGAGCCTGGTTATGGA 59.747 55.000 0.00 0.00 34.48 3.41
3665 4089 1.133976 GCTGTGAGCCTGGTTATGGAT 60.134 52.381 0.00 0.00 34.48 3.41
3666 4090 2.569059 CTGTGAGCCTGGTTATGGATG 58.431 52.381 0.00 0.00 0.00 3.51
3667 4091 1.212688 TGTGAGCCTGGTTATGGATGG 59.787 52.381 0.00 0.00 0.00 3.51
3668 4092 1.490490 GTGAGCCTGGTTATGGATGGA 59.510 52.381 0.00 0.00 0.00 3.41
3669 4093 2.107204 GTGAGCCTGGTTATGGATGGAT 59.893 50.000 0.00 0.00 0.00 3.41
3736 4160 9.994432 CACTTTTTATATTTCTGCTAAGACCAG 57.006 33.333 0.00 0.00 29.98 4.00
3750 4174 0.668535 GACCAGGTTCTTGCAACCAC 59.331 55.000 8.72 2.06 42.69 4.16
3804 4252 6.348704 GCAAATTGCAGCCAAAATAATGAGTT 60.349 34.615 13.73 0.00 44.26 3.01
3888 4336 3.326006 AGCTGTGGAATTTCAGTCAGAGA 59.674 43.478 8.24 0.00 34.57 3.10
3889 4337 3.683822 GCTGTGGAATTTCAGTCAGAGAG 59.316 47.826 8.24 0.00 34.57 3.20
3890 4338 4.802248 GCTGTGGAATTTCAGTCAGAGAGT 60.802 45.833 8.24 0.00 34.57 3.24
3891 4339 4.635223 TGTGGAATTTCAGTCAGAGAGTG 58.365 43.478 0.00 0.00 34.59 3.51
3892 4340 3.999663 GTGGAATTTCAGTCAGAGAGTGG 59.000 47.826 0.00 0.00 34.12 4.00
3893 4341 3.648067 TGGAATTTCAGTCAGAGAGTGGT 59.352 43.478 0.00 0.00 34.12 4.16
3900 4348 0.601311 GTCAGAGAGTGGTGGTGCAC 60.601 60.000 8.80 8.80 0.00 4.57
3901 4349 0.760567 TCAGAGAGTGGTGGTGCACT 60.761 55.000 17.98 0.00 34.40 4.40
3911 4359 1.065854 GGTGGTGCACTGATAGCTCTT 60.066 52.381 17.98 0.00 34.40 2.85
3933 4381 7.046033 TCTTTACCTTATCTCCGGAATTTCAC 58.954 38.462 5.23 0.00 0.00 3.18
3937 4404 5.053145 CCTTATCTCCGGAATTTCACTCAG 58.947 45.833 5.23 0.00 0.00 3.35
3938 4405 5.395768 CCTTATCTCCGGAATTTCACTCAGT 60.396 44.000 5.23 0.00 0.00 3.41
3939 4406 3.594603 TCTCCGGAATTTCACTCAGTC 57.405 47.619 5.23 0.00 0.00 3.51
3940 4407 2.897326 TCTCCGGAATTTCACTCAGTCA 59.103 45.455 5.23 0.00 0.00 3.41
3941 4408 3.056536 TCTCCGGAATTTCACTCAGTCAG 60.057 47.826 5.23 0.00 0.00 3.51
3942 4409 2.632996 TCCGGAATTTCACTCAGTCAGT 59.367 45.455 0.00 0.00 34.67 3.41
3972 4439 3.181466 TGCAGTCCACTGTCGCATATATT 60.181 43.478 8.49 0.00 45.45 1.28
3973 4440 4.038642 TGCAGTCCACTGTCGCATATATTA 59.961 41.667 8.49 0.00 45.45 0.98
3974 4441 5.171476 GCAGTCCACTGTCGCATATATTAT 58.829 41.667 8.49 0.00 45.45 1.28
3975 4442 6.071616 TGCAGTCCACTGTCGCATATATTATA 60.072 38.462 8.49 0.00 45.45 0.98
3976 4443 6.980978 GCAGTCCACTGTCGCATATATTATAT 59.019 38.462 8.49 0.00 45.45 0.86
3977 4444 8.135529 GCAGTCCACTGTCGCATATATTATATA 58.864 37.037 8.49 0.00 45.45 0.86
4002 4478 2.404559 TGGACCAAAGTAGTGGACAGT 58.595 47.619 0.00 0.00 41.65 3.55
4003 4479 2.367567 TGGACCAAAGTAGTGGACAGTC 59.632 50.000 0.00 0.00 41.65 3.51
4004 4480 2.633481 GGACCAAAGTAGTGGACAGTCT 59.367 50.000 0.00 0.00 41.65 3.24
4008 4484 4.248859 CCAAAGTAGTGGACAGTCTCATG 58.751 47.826 0.00 0.00 41.65 3.07
4009 4485 3.601443 AAGTAGTGGACAGTCTCATGC 57.399 47.619 0.00 0.00 0.00 4.06
4011 4487 2.495270 AGTAGTGGACAGTCTCATGCAG 59.505 50.000 0.00 0.00 0.00 4.41
4013 4489 0.321034 GTGGACAGTCTCATGCAGCA 60.321 55.000 0.00 0.00 0.00 4.41
4014 4490 0.397564 TGGACAGTCTCATGCAGCAA 59.602 50.000 0.00 0.00 0.00 3.91
4015 4491 1.003928 TGGACAGTCTCATGCAGCAAT 59.996 47.619 0.00 0.00 0.00 3.56
4016 4492 2.236893 TGGACAGTCTCATGCAGCAATA 59.763 45.455 0.00 0.00 0.00 1.90
4018 4494 4.101430 TGGACAGTCTCATGCAGCAATATA 59.899 41.667 0.00 0.00 0.00 0.86
4019 4495 5.059161 GGACAGTCTCATGCAGCAATATAA 58.941 41.667 0.00 0.00 0.00 0.98
4020 4496 5.528690 GGACAGTCTCATGCAGCAATATAAA 59.471 40.000 0.00 0.00 0.00 1.40
4022 4498 7.395190 ACAGTCTCATGCAGCAATATAAAAA 57.605 32.000 0.00 0.00 0.00 1.94
4043 4557 7.538303 AAAAACATGCATTCGGATTTAATCC 57.462 32.000 13.67 13.67 46.22 3.01
4058 4572 1.745232 AATCCGCGGTAATTTCAGCA 58.255 45.000 27.15 0.67 0.00 4.41
4099 4613 3.627577 TGACCTCAAAGTTCAGCAGAAAC 59.372 43.478 0.00 0.00 35.08 2.78
4100 4614 3.879892 GACCTCAAAGTTCAGCAGAAACT 59.120 43.478 0.00 0.00 35.08 2.66
4101 4615 5.036117 ACCTCAAAGTTCAGCAGAAACTA 57.964 39.130 0.00 0.00 35.08 2.24
4102 4616 4.816925 ACCTCAAAGTTCAGCAGAAACTAC 59.183 41.667 0.00 0.00 35.08 2.73
4103 4617 5.059833 CCTCAAAGTTCAGCAGAAACTACT 58.940 41.667 0.00 0.00 35.08 2.57
4115 4634 4.938226 GCAGAAACTACTCTACAAGCCAAT 59.062 41.667 0.00 0.00 0.00 3.16
4196 4716 1.550327 TCCAGTCTCGCATCTTCAGT 58.450 50.000 0.00 0.00 0.00 3.41
4209 4729 4.689345 GCATCTTCAGTAGTAAACAACCGT 59.311 41.667 0.00 0.00 0.00 4.83
4216 4736 2.228138 AGTAAACAACCGTTGCGAGA 57.772 45.000 11.29 0.00 34.86 4.04
4218 4738 3.135994 AGTAAACAACCGTTGCGAGAAT 58.864 40.909 11.29 0.00 34.86 2.40
4221 4741 1.808411 ACAACCGTTGCGAGAATGAT 58.192 45.000 11.29 0.00 0.00 2.45
4257 4777 7.345192 GCTCATATGAACCACTACAAATAACG 58.655 38.462 6.90 0.00 0.00 3.18
4258 4778 7.011109 GCTCATATGAACCACTACAAATAACGT 59.989 37.037 6.90 0.00 0.00 3.99
4266 4786 4.212425 CCACTACAAATAACGTGACAGCAA 59.788 41.667 0.00 0.00 0.00 3.91
4269 4789 4.624336 ACAAATAACGTGACAGCAACAA 57.376 36.364 0.00 0.00 0.00 2.83
4276 4796 1.937223 CGTGACAGCAACAACAACCTA 59.063 47.619 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.416513 TCCAATACATTCCATGGACTCCAT 59.583 41.667 15.91 4.55 46.37 3.41
72 73 6.064060 TCATTCCAATACATTCCATGGACTC 58.936 40.000 15.91 0.00 41.48 3.36
82 83 8.827832 TTCTTCCATCTTCATTCCAATACATT 57.172 30.769 0.00 0.00 0.00 2.71
132 134 6.452242 TCGAGTTTAAAGCATAGAAGTGACA 58.548 36.000 0.00 0.00 0.00 3.58
165 167 1.081094 TCATGACAAGCACAGCATCG 58.919 50.000 0.00 0.00 0.00 3.84
287 289 9.110502 GGTAAATGGAAAGGATAGTCTAAACAG 57.889 37.037 0.00 0.00 0.00 3.16
428 430 8.709646 AGACGTCAACAAGACTTTTATTATGTC 58.290 33.333 19.50 0.00 45.32 3.06
429 431 8.603242 AGACGTCAACAAGACTTTTATTATGT 57.397 30.769 19.50 0.00 45.32 2.29
465 497 1.859080 GTAACCATTCATCGGTCGCTC 59.141 52.381 0.00 0.00 34.99 5.03
472 504 1.999735 ACGTGCTGTAACCATTCATCG 59.000 47.619 0.00 0.00 0.00 3.84
484 516 2.035961 ACTACAATCAGTGACGTGCTGT 59.964 45.455 14.10 0.00 35.60 4.40
485 517 2.663602 GACTACAATCAGTGACGTGCTG 59.336 50.000 9.69 9.69 35.43 4.41
486 518 2.352814 GGACTACAATCAGTGACGTGCT 60.353 50.000 0.00 0.00 0.00 4.40
487 519 1.993370 GGACTACAATCAGTGACGTGC 59.007 52.381 0.00 0.00 0.00 5.34
488 520 3.245797 CTGGACTACAATCAGTGACGTG 58.754 50.000 0.00 0.00 0.00 4.49
489 521 2.891580 ACTGGACTACAATCAGTGACGT 59.108 45.455 0.00 0.00 39.89 4.34
490 522 3.057526 TGACTGGACTACAATCAGTGACG 60.058 47.826 0.00 0.00 41.24 4.35
491 523 4.238514 GTGACTGGACTACAATCAGTGAC 58.761 47.826 0.00 0.00 41.24 3.67
492 524 3.258372 GGTGACTGGACTACAATCAGTGA 59.742 47.826 0.00 0.00 41.24 3.41
493 525 3.589988 GGTGACTGGACTACAATCAGTG 58.410 50.000 0.00 0.00 41.24 3.66
494 526 2.231478 CGGTGACTGGACTACAATCAGT 59.769 50.000 0.00 0.00 43.50 3.41
512 544 7.413000 CGTCTCTGATTGATTATTTTCAACGGT 60.413 37.037 0.00 0.00 38.37 4.83
727 770 6.263617 ACTTTAGCGTTATTTTCTGGTCCAAA 59.736 34.615 0.00 0.00 0.00 3.28
801 844 2.406401 GCTCATGTGCGTGATGGC 59.594 61.111 3.67 0.00 0.00 4.40
899 944 1.376543 CCAACTGCTGGCTCTACATG 58.623 55.000 0.00 0.00 38.76 3.21
900 945 3.869623 CCAACTGCTGGCTCTACAT 57.130 52.632 0.00 0.00 38.76 2.29
909 954 3.181487 GGGTAATTACATGCCAACTGCTG 60.181 47.826 17.16 0.00 42.00 4.41
910 955 3.023832 GGGTAATTACATGCCAACTGCT 58.976 45.455 17.16 0.00 42.00 4.24
911 956 3.023832 AGGGTAATTACATGCCAACTGC 58.976 45.455 17.16 0.00 41.77 4.40
912 957 4.526970 AGAGGGTAATTACATGCCAACTG 58.473 43.478 17.16 0.00 0.00 3.16
913 958 4.227300 TGAGAGGGTAATTACATGCCAACT 59.773 41.667 17.16 11.62 0.00 3.16
914 959 4.523083 TGAGAGGGTAATTACATGCCAAC 58.477 43.478 17.16 7.82 0.00 3.77
915 960 4.853468 TGAGAGGGTAATTACATGCCAA 57.147 40.909 17.16 0.00 0.00 4.52
916 961 4.853468 TTGAGAGGGTAATTACATGCCA 57.147 40.909 17.16 5.60 0.00 4.92
917 962 6.715347 ATTTTGAGAGGGTAATTACATGCC 57.285 37.500 17.16 9.26 0.00 4.40
918 963 8.220755 TGTATTTTGAGAGGGTAATTACATGC 57.779 34.615 17.16 5.50 0.00 4.06
1113 1199 1.195442 TGACGTATCCAAGTGGGCCA 61.195 55.000 0.00 0.00 36.21 5.36
1148 1234 1.203440 ACCCAGGTGGATCACTTACCT 60.203 52.381 0.00 0.00 45.36 3.08
1209 1295 0.920664 TGTCGATGCGAATTGTAGCG 59.079 50.000 0.00 0.00 43.72 4.26
1281 1367 1.148310 AAACCAAGTCAGCATCGACG 58.852 50.000 0.00 0.00 40.98 5.12
1340 1426 6.480320 GTCTTTGCGTAAGTATGAAGGATGAT 59.520 38.462 0.00 0.00 41.68 2.45
1488 1589 0.387622 CATTGGTGTTCAGGCAAGCG 60.388 55.000 0.00 0.00 0.00 4.68
1509 1610 6.419710 GGCAAGTTACCATGTAAACAAAAGAC 59.580 38.462 9.35 0.00 0.00 3.01
1548 1649 6.721318 ACAAGAAGGCTCAAGGTAATTCATA 58.279 36.000 0.00 0.00 0.00 2.15
1554 1655 2.289444 CCGACAAGAAGGCTCAAGGTAA 60.289 50.000 0.00 0.00 0.00 2.85
1641 1748 1.064654 GCAAATCCGCTCTTCATGGAC 59.935 52.381 0.00 0.00 33.91 4.02
1649 1756 0.037326 TCGAACAGCAAATCCGCTCT 60.037 50.000 0.00 0.00 41.38 4.09
1689 1796 4.313020 AATGCTCCACTCTTTCATTCCT 57.687 40.909 0.00 0.00 0.00 3.36
1692 1799 6.240894 TGTCTTAATGCTCCACTCTTTCATT 58.759 36.000 0.00 0.00 0.00 2.57
1779 1886 4.878971 GGCAACAAATAAAACCACAACCTT 59.121 37.500 0.00 0.00 0.00 3.50
1825 1932 0.322906 AGAGCCCTAGCAGTTTTGGC 60.323 55.000 0.00 0.00 43.56 4.52
1861 1969 2.093890 CTGCAATACCAAGATGGCACA 58.906 47.619 0.00 0.00 42.67 4.57
1862 1970 1.202336 GCTGCAATACCAAGATGGCAC 60.202 52.381 0.00 0.00 42.67 5.01
1954 2062 4.764679 AAATACGCAGTCTGCAAAATCA 57.235 36.364 24.13 2.94 45.36 2.57
2324 2437 1.754803 CTCCGTGACCCAGCTTATGTA 59.245 52.381 0.00 0.00 0.00 2.29
2510 2623 1.945819 GCGCTTGTCTCATTTCCTCCA 60.946 52.381 0.00 0.00 0.00 3.86
2604 2717 1.676678 AAGCAATCTCGGCGAGCCTA 61.677 55.000 31.01 15.61 36.08 3.93
2606 2719 2.109126 AAAGCAATCTCGGCGAGCC 61.109 57.895 31.01 18.04 36.08 4.70
2631 2744 1.658673 GTAGTCGATACCCCTGGCG 59.341 63.158 0.00 0.00 0.00 5.69
2640 2753 4.825634 CACCCTTGATGTAGGTAGTCGATA 59.174 45.833 0.00 0.00 33.17 2.92
2688 2801 3.719268 AGGATGTTGTGTGGCTTGATA 57.281 42.857 0.00 0.00 0.00 2.15
2964 3079 5.127845 AGTTAGTCTGTCATACACCCATGAG 59.872 44.000 0.00 0.00 35.63 2.90
3030 3154 0.605589 ACAGCTTCCTCTCCAACTCG 59.394 55.000 0.00 0.00 0.00 4.18
3090 3214 1.448540 CTCGCTCATTGTCGGCCTT 60.449 57.895 0.00 0.00 0.00 4.35
3169 3293 0.096454 GTGGTTTGCTTATCGTCGCC 59.904 55.000 0.00 0.00 0.00 5.54
3178 3302 0.106918 TCCGGAACAGTGGTTTGCTT 60.107 50.000 0.00 0.00 37.36 3.91
3183 3307 2.951229 AAGAATCCGGAACAGTGGTT 57.049 45.000 9.01 0.00 40.76 3.67
3225 3349 1.074727 TCATCCTCCTCCGAGATCTCC 59.925 57.143 17.13 0.00 38.52 3.71
3321 3455 5.415221 CAGTTGGAGTTCTACATCCTCTTC 58.585 45.833 0.00 0.00 36.50 2.87
3471 3719 0.751643 AGACGGGCAGCAACAAACTT 60.752 50.000 0.00 0.00 0.00 2.66
3504 3885 6.741448 TGCAAAATTAGTTCGTACAAAAGC 57.259 33.333 0.00 0.00 0.00 3.51
3513 3894 8.155923 GCTTACAAAGAATGCAAAATTAGTTCG 58.844 33.333 0.00 0.00 0.00 3.95
3540 3921 0.031111 ATACAGGACAGGCTGGGCTA 60.031 55.000 20.34 0.99 0.00 3.93
3595 3978 4.532126 AGTCCACACATTGAGAATACAGGA 59.468 41.667 0.00 0.00 0.00 3.86
3597 3980 6.348786 CCAAAGTCCACACATTGAGAATACAG 60.349 42.308 0.00 0.00 33.79 2.74
3598 3981 5.473162 CCAAAGTCCACACATTGAGAATACA 59.527 40.000 0.00 0.00 33.79 2.29
3600 3983 5.875224 TCCAAAGTCCACACATTGAGAATA 58.125 37.500 0.00 0.00 33.79 1.75
3601 3984 4.728772 TCCAAAGTCCACACATTGAGAAT 58.271 39.130 0.00 0.00 33.79 2.40
3612 4036 3.810386 GTCTTCAACTCTCCAAAGTCCAC 59.190 47.826 0.00 0.00 0.00 4.02
3619 4043 4.220602 TCATCATCGTCTTCAACTCTCCAA 59.779 41.667 0.00 0.00 0.00 3.53
3625 4049 5.163468 ACAGCTATCATCATCGTCTTCAACT 60.163 40.000 0.00 0.00 0.00 3.16
3643 4067 1.486310 CCATAACCAGGCTCACAGCTA 59.514 52.381 0.00 0.00 41.99 3.32
3644 4068 0.254178 CCATAACCAGGCTCACAGCT 59.746 55.000 0.00 0.00 41.99 4.24
3648 4072 1.490490 TCCATCCATAACCAGGCTCAC 59.510 52.381 0.00 0.00 0.00 3.51
3649 4073 1.891933 TCCATCCATAACCAGGCTCA 58.108 50.000 0.00 0.00 0.00 4.26
3651 4075 2.224621 CGAATCCATCCATAACCAGGCT 60.225 50.000 0.00 0.00 0.00 4.58
3653 4077 3.181455 TGACGAATCCATCCATAACCAGG 60.181 47.826 0.00 0.00 0.00 4.45
3654 4078 4.071961 TGACGAATCCATCCATAACCAG 57.928 45.455 0.00 0.00 0.00 4.00
3655 4079 4.705110 ATGACGAATCCATCCATAACCA 57.295 40.909 0.00 0.00 0.00 3.67
3657 4081 6.253727 GTCGATATGACGAATCCATCCATAAC 59.746 42.308 0.00 0.00 43.75 1.89
3658 4082 6.330278 GTCGATATGACGAATCCATCCATAA 58.670 40.000 0.00 0.00 43.75 1.90
3660 4084 4.748892 GTCGATATGACGAATCCATCCAT 58.251 43.478 0.00 0.00 43.75 3.41
3661 4085 4.174411 GTCGATATGACGAATCCATCCA 57.826 45.455 0.00 0.00 43.75 3.41
3736 4160 1.336755 ACATTCGTGGTTGCAAGAACC 59.663 47.619 0.00 0.00 40.67 3.62
3750 4174 7.755582 TGATACAAGTCTACAATCACATTCG 57.244 36.000 0.00 0.00 0.00 3.34
3788 4236 6.295292 GGTCCAAAGAACTCATTATTTTGGCT 60.295 38.462 8.93 0.00 44.58 4.75
3797 4245 5.304686 TGTAGTGGTCCAAAGAACTCATT 57.695 39.130 0.00 0.00 0.00 2.57
3804 4252 5.063204 CACTGATTTGTAGTGGTCCAAAGA 58.937 41.667 0.00 0.00 41.36 2.52
3829 4277 1.642952 GCTGAGGTTGCTACTGCTGC 61.643 60.000 0.00 0.00 40.48 5.25
3888 4336 0.036010 GCTATCAGTGCACCACCACT 60.036 55.000 14.63 0.00 46.47 4.00
3889 4337 0.036010 AGCTATCAGTGCACCACCAC 60.036 55.000 14.63 0.00 34.49 4.16
3890 4338 0.250234 GAGCTATCAGTGCACCACCA 59.750 55.000 14.63 0.00 34.49 4.17
3891 4339 0.539051 AGAGCTATCAGTGCACCACC 59.461 55.000 14.63 0.00 34.49 4.61
3892 4340 2.393271 AAGAGCTATCAGTGCACCAC 57.607 50.000 14.63 0.00 34.10 4.16
3893 4341 3.369471 GGTAAAGAGCTATCAGTGCACCA 60.369 47.826 14.63 0.00 0.00 4.17
3900 4348 6.349777 CCGGAGATAAGGTAAAGAGCTATCAG 60.350 46.154 0.00 0.00 31.56 2.90
3901 4349 5.477291 CCGGAGATAAGGTAAAGAGCTATCA 59.523 44.000 0.00 0.00 31.56 2.15
3911 4359 6.155565 TGAGTGAAATTCCGGAGATAAGGTAA 59.844 38.462 3.34 0.00 0.00 2.85
3933 4381 1.889170 TGCAGGTCTACACTGACTGAG 59.111 52.381 0.00 0.00 38.20 3.35
3937 4404 1.067495 GGACTGCAGGTCTACACTGAC 60.067 57.143 19.93 0.00 43.97 3.51
3938 4405 1.257743 GGACTGCAGGTCTACACTGA 58.742 55.000 19.93 0.00 43.97 3.41
3939 4406 0.969149 TGGACTGCAGGTCTACACTG 59.031 55.000 19.93 0.00 43.97 3.66
3940 4407 3.457560 TGGACTGCAGGTCTACACT 57.542 52.632 19.93 0.00 43.97 3.55
3972 4439 9.831682 TCCACTACTTTGGTCCATGTATATATA 57.168 33.333 0.00 0.00 37.93 0.86
3973 4440 8.594550 GTCCACTACTTTGGTCCATGTATATAT 58.405 37.037 0.00 0.00 37.93 0.86
3974 4441 7.565768 TGTCCACTACTTTGGTCCATGTATATA 59.434 37.037 0.00 0.00 37.93 0.86
3975 4442 6.385759 TGTCCACTACTTTGGTCCATGTATAT 59.614 38.462 0.00 0.00 37.93 0.86
3976 4443 5.722441 TGTCCACTACTTTGGTCCATGTATA 59.278 40.000 0.00 0.00 37.93 1.47
3977 4444 4.534500 TGTCCACTACTTTGGTCCATGTAT 59.466 41.667 0.00 0.00 37.93 2.29
3978 4445 3.904965 TGTCCACTACTTTGGTCCATGTA 59.095 43.478 0.00 0.00 37.93 2.29
3979 4446 2.708861 TGTCCACTACTTTGGTCCATGT 59.291 45.455 0.00 0.00 37.93 3.21
3980 4447 3.244561 ACTGTCCACTACTTTGGTCCATG 60.245 47.826 0.00 0.00 37.93 3.66
3981 4448 2.979678 ACTGTCCACTACTTTGGTCCAT 59.020 45.455 0.00 0.00 37.93 3.41
3982 4449 2.367567 GACTGTCCACTACTTTGGTCCA 59.632 50.000 0.00 0.00 37.93 4.02
3983 4450 2.633481 AGACTGTCCACTACTTTGGTCC 59.367 50.000 3.76 0.00 37.93 4.46
3984 4451 3.321111 TGAGACTGTCCACTACTTTGGTC 59.679 47.826 3.76 0.00 37.93 4.02
3985 4452 3.305720 TGAGACTGTCCACTACTTTGGT 58.694 45.455 3.76 0.00 37.93 3.67
3986 4453 4.248859 CATGAGACTGTCCACTACTTTGG 58.751 47.826 3.76 0.00 38.10 3.28
3987 4454 3.681897 GCATGAGACTGTCCACTACTTTG 59.318 47.826 3.76 0.00 0.00 2.77
4019 4495 7.538303 GGATTAAATCCGAATGCATGTTTTT 57.462 32.000 0.00 0.00 40.13 1.94
4033 4547 5.427036 TGAAATTACCGCGGATTAAATCC 57.573 39.130 35.90 18.25 46.22 3.01
4043 4557 7.672351 TTTTTATATTGCTGAAATTACCGCG 57.328 32.000 0.00 0.00 0.00 6.46
4072 4586 3.318839 TGCTGAACTTTGAGGTCATTTGG 59.681 43.478 0.00 0.00 41.79 3.28
4099 4613 6.238484 GGTTGCATTATTGGCTTGTAGAGTAG 60.238 42.308 0.00 0.00 0.00 2.57
4100 4614 5.588648 GGTTGCATTATTGGCTTGTAGAGTA 59.411 40.000 0.00 0.00 0.00 2.59
4101 4615 4.399303 GGTTGCATTATTGGCTTGTAGAGT 59.601 41.667 0.00 0.00 0.00 3.24
4102 4616 4.641989 AGGTTGCATTATTGGCTTGTAGAG 59.358 41.667 0.00 0.00 0.00 2.43
4103 4617 4.599041 AGGTTGCATTATTGGCTTGTAGA 58.401 39.130 0.00 0.00 0.00 2.59
4115 4634 0.676466 CACGGCAGGAGGTTGCATTA 60.676 55.000 0.00 0.00 45.86 1.90
4173 4693 0.467384 AAGATGCGAGACTGGATGGG 59.533 55.000 0.00 0.00 0.00 4.00
4196 4716 3.367992 TCTCGCAACGGTTGTTTACTA 57.632 42.857 20.92 1.50 35.72 1.82
4209 4729 2.762887 AGAGGACTCATCATTCTCGCAA 59.237 45.455 1.75 0.00 0.00 4.85
4216 4736 2.475155 TGAGCCAGAGGACTCATCATT 58.525 47.619 1.75 0.00 37.99 2.57
4218 4738 3.697799 TGAGCCAGAGGACTCATCA 57.302 52.632 1.75 0.00 37.99 3.07
4221 4741 3.319031 TCATATGAGCCAGAGGACTCA 57.681 47.619 0.00 10.89 46.34 3.41
4257 4777 3.377172 AGTTAGGTTGTTGTTGCTGTCAC 59.623 43.478 0.00 0.00 0.00 3.67
4258 4778 3.616219 AGTTAGGTTGTTGTTGCTGTCA 58.384 40.909 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.