Multiple sequence alignment - TraesCS3A01G018000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G018000 chr3A 100.000 3323 0 0 1 3323 11395718 11399040 0.000000e+00 6137.0
1 TraesCS3A01G018000 chr3A 94.666 1556 58 3 833 2385 10612291 10613824 0.000000e+00 2390.0
2 TraesCS3A01G018000 chr3A 92.394 894 49 7 2432 3307 10613822 10614714 0.000000e+00 1256.0
3 TraesCS3A01G018000 chr3A 93.038 632 16 6 3 632 10595900 10596505 0.000000e+00 898.0
4 TraesCS3A01G018000 chr3A 94.737 76 4 0 692 767 10612205 10612280 5.820000e-23 119.0
5 TraesCS3A01G018000 chr3A 100.000 34 0 0 635 668 10614531 10614498 2.770000e-06 63.9
6 TraesCS3A01G018000 chr3A 100.000 34 0 0 3092 3125 11396385 11396352 2.770000e-06 63.9
7 TraesCS3A01G018000 chr3A 100.000 34 0 0 635 668 11398842 11398809 2.770000e-06 63.9
8 TraesCS3A01G018000 chrUn 92.617 1490 92 5 865 2345 307248630 307247150 0.000000e+00 2126.0
9 TraesCS3A01G018000 chrUn 93.246 1303 85 1 1043 2345 35288990 35287691 0.000000e+00 1916.0
10 TraesCS3A01G018000 chrUn 92.715 1304 90 3 1043 2345 278999352 278998053 0.000000e+00 1877.0
11 TraesCS3A01G018000 chrUn 92.715 1304 90 3 1043 2345 280244323 280243024 0.000000e+00 1877.0
12 TraesCS3A01G018000 chrUn 92.715 1304 90 3 1043 2345 280251361 280250062 0.000000e+00 1877.0
13 TraesCS3A01G018000 chrUn 92.655 1307 91 3 1040 2345 284863926 284865228 0.000000e+00 1877.0
14 TraesCS3A01G018000 chrUn 93.568 1166 55 7 2162 3307 225567099 225565934 0.000000e+00 1720.0
15 TraesCS3A01G018000 chrUn 93.568 1166 55 7 2162 3307 237457271 237458436 0.000000e+00 1720.0
16 TraesCS3A01G018000 chrUn 93.568 1166 55 7 2162 3307 257668987 257670152 0.000000e+00 1720.0
17 TraesCS3A01G018000 chrUn 93.077 1170 78 1 1043 2212 197210647 197209481 0.000000e+00 1709.0
18 TraesCS3A01G018000 chrUn 92.913 1157 82 0 1177 2333 35285998 35284842 0.000000e+00 1683.0
19 TraesCS3A01G018000 chrUn 89.433 388 28 2 2378 2764 35284353 35284728 8.340000e-131 477.0
20 TraesCS3A01G018000 chrUn 94.872 78 3 1 386 462 285835465 285835542 1.620000e-23 121.0
21 TraesCS3A01G018000 chrUn 94.872 78 3 1 386 462 373168968 373169045 1.620000e-23 121.0
22 TraesCS3A01G018000 chrUn 100.000 32 0 0 637 668 225566119 225566150 3.580000e-05 60.2
23 TraesCS3A01G018000 chrUn 100.000 32 0 0 637 668 237458251 237458220 3.580000e-05 60.2
24 TraesCS3A01G018000 chrUn 100.000 32 0 0 637 668 257669967 257669936 3.580000e-05 60.2
25 TraesCS3A01G018000 chr3D 92.808 292 11 2 1 292 9729697 9729416 6.630000e-112 414.0
26 TraesCS3A01G018000 chr2A 80.488 164 27 4 462 621 436716517 436716355 1.620000e-23 121.0
27 TraesCS3A01G018000 chr2A 87.755 49 5 1 2832 2879 38339904 38339856 4.630000e-04 56.5
28 TraesCS3A01G018000 chr2D 76.374 182 29 11 462 632 329857095 329856917 5.910000e-13 86.1
29 TraesCS3A01G018000 chr2D 87.755 49 5 1 2832 2879 35033403 35033355 4.630000e-04 56.5
30 TraesCS3A01G018000 chr2B 100.000 32 0 0 466 497 662791877 662791908 3.580000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G018000 chr3A 11395718 11399040 3322 False 6137.0 6137 100.000000 1 3323 1 chr3A.!!$F2 3322
1 TraesCS3A01G018000 chr3A 10612205 10614714 2509 False 1255.0 2390 93.932333 692 3307 3 chr3A.!!$F3 2615
2 TraesCS3A01G018000 chr3A 10595900 10596505 605 False 898.0 898 93.038000 3 632 1 chr3A.!!$F1 629
3 TraesCS3A01G018000 chrUn 307247150 307248630 1480 True 2126.0 2126 92.617000 865 2345 1 chrUn.!!$R8 1480
4 TraesCS3A01G018000 chrUn 278998053 278999352 1299 True 1877.0 1877 92.715000 1043 2345 1 chrUn.!!$R5 1302
5 TraesCS3A01G018000 chrUn 280243024 280244323 1299 True 1877.0 1877 92.715000 1043 2345 1 chrUn.!!$R6 1302
6 TraesCS3A01G018000 chrUn 280250062 280251361 1299 True 1877.0 1877 92.715000 1043 2345 1 chrUn.!!$R7 1302
7 TraesCS3A01G018000 chrUn 284863926 284865228 1302 False 1877.0 1877 92.655000 1040 2345 1 chrUn.!!$F5 1305
8 TraesCS3A01G018000 chrUn 35284842 35288990 4148 True 1799.5 1916 93.079500 1043 2345 2 chrUn.!!$R9 1302
9 TraesCS3A01G018000 chrUn 225565934 225567099 1165 True 1720.0 1720 93.568000 2162 3307 1 chrUn.!!$R2 1145
10 TraesCS3A01G018000 chrUn 237457271 237458436 1165 False 1720.0 1720 93.568000 2162 3307 1 chrUn.!!$F3 1145
11 TraesCS3A01G018000 chrUn 257668987 257670152 1165 False 1720.0 1720 93.568000 2162 3307 1 chrUn.!!$F4 1145
12 TraesCS3A01G018000 chrUn 197209481 197210647 1166 True 1709.0 1709 93.077000 1043 2212 1 chrUn.!!$R1 1169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 619 0.030369 CCCGCGCTACTACTAAGTGG 59.970 60.0 5.56 0.0 36.36 4.00 F
637 640 0.034574 CCCCATCATGTCCCAACGAA 60.035 55.0 0.00 0.0 0.00 3.85 F
1504 1519 0.108615 CTCCCTTGGACACTACAGCG 60.109 60.0 0.00 0.0 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1621 1636 1.779569 AAGAAGCGTCCGTTGTACTG 58.220 50.000 0.00 0.0 0.00 2.74 R
1823 1838 3.900941 GTGCTACAACAAGGACCAAATG 58.099 45.455 0.00 0.0 32.12 2.32 R
2922 3052 0.106268 TCCACTGGCAATGGTTGTGT 60.106 50.000 15.49 0.0 38.47 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 5.350504 AATGTCCCTAATGTCAGAGACTG 57.649 43.478 0.00 0.00 33.15 3.51
99 100 6.885735 ACTTTCTTTTGTTTCATCAAACCG 57.114 33.333 0.00 0.00 41.25 4.44
265 268 6.617371 AGACATATTGGTTCTGAATCTACCCT 59.383 38.462 1.90 0.00 0.00 4.34
274 277 6.371825 GGTTCTGAATCTACCCTAAACACAAG 59.628 42.308 0.00 0.00 0.00 3.16
287 290 4.568152 AAACACAAGGCTTGTACATGAC 57.432 40.909 30.72 9.69 43.23 3.06
294 297 3.668447 AGGCTTGTACATGACTGTTCTG 58.332 45.455 15.97 0.00 36.79 3.02
356 359 9.905713 AATTGAGAGGCTAGAAAATAATACACA 57.094 29.630 0.00 0.00 0.00 3.72
357 360 8.718102 TTGAGAGGCTAGAAAATAATACACAC 57.282 34.615 0.00 0.00 0.00 3.82
358 361 7.847096 TGAGAGGCTAGAAAATAATACACACA 58.153 34.615 0.00 0.00 0.00 3.72
359 362 7.764443 TGAGAGGCTAGAAAATAATACACACAC 59.236 37.037 0.00 0.00 0.00 3.82
360 363 6.757010 AGAGGCTAGAAAATAATACACACACG 59.243 38.462 0.00 0.00 0.00 4.49
361 364 5.293569 AGGCTAGAAAATAATACACACACGC 59.706 40.000 0.00 0.00 0.00 5.34
362 365 5.188194 GCTAGAAAATAATACACACACGCG 58.812 41.667 3.53 3.53 0.00 6.01
363 366 3.998522 AGAAAATAATACACACACGCGC 58.001 40.909 5.73 0.00 0.00 6.86
364 367 3.433957 AGAAAATAATACACACACGCGCA 59.566 39.130 5.73 0.00 0.00 6.09
365 368 2.798834 AATAATACACACACGCGCAC 57.201 45.000 5.73 0.00 0.00 5.34
366 369 1.715993 ATAATACACACACGCGCACA 58.284 45.000 5.73 0.00 0.00 4.57
367 370 1.715993 TAATACACACACGCGCACAT 58.284 45.000 5.73 0.00 0.00 3.21
368 371 0.165727 AATACACACACGCGCACATG 59.834 50.000 5.73 4.80 0.00 3.21
369 372 2.239341 ATACACACACGCGCACATGC 62.239 55.000 5.73 0.00 37.78 4.06
392 395 3.858989 CGCGCACACACACACACA 61.859 61.111 8.75 0.00 0.00 3.72
393 396 2.277247 GCGCACACACACACACAC 60.277 61.111 0.30 0.00 0.00 3.82
394 397 3.033166 GCGCACACACACACACACA 62.033 57.895 0.30 0.00 0.00 3.72
395 398 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
396 399 1.872468 GCACACACACACACACACA 59.128 52.632 0.00 0.00 0.00 3.72
397 400 0.451383 GCACACACACACACACACAT 59.549 50.000 0.00 0.00 0.00 3.21
398 401 1.531677 GCACACACACACACACACATC 60.532 52.381 0.00 0.00 0.00 3.06
399 402 1.736681 CACACACACACACACACATCA 59.263 47.619 0.00 0.00 0.00 3.07
400 403 1.737236 ACACACACACACACACATCAC 59.263 47.619 0.00 0.00 0.00 3.06
401 404 1.063912 CACACACACACACACATCACC 59.936 52.381 0.00 0.00 0.00 4.02
402 405 0.662619 CACACACACACACATCACCC 59.337 55.000 0.00 0.00 0.00 4.61
403 406 0.546122 ACACACACACACATCACCCT 59.454 50.000 0.00 0.00 0.00 4.34
404 407 1.765904 ACACACACACACATCACCCTA 59.234 47.619 0.00 0.00 0.00 3.53
405 408 2.371841 ACACACACACACATCACCCTAT 59.628 45.455 0.00 0.00 0.00 2.57
406 409 3.580895 ACACACACACACATCACCCTATA 59.419 43.478 0.00 0.00 0.00 1.31
407 410 4.041075 ACACACACACACATCACCCTATAA 59.959 41.667 0.00 0.00 0.00 0.98
408 411 4.391830 CACACACACACATCACCCTATAAC 59.608 45.833 0.00 0.00 0.00 1.89
409 412 4.286032 ACACACACACATCACCCTATAACT 59.714 41.667 0.00 0.00 0.00 2.24
410 413 4.870426 CACACACACATCACCCTATAACTC 59.130 45.833 0.00 0.00 0.00 3.01
411 414 4.112634 CACACACATCACCCTATAACTCG 58.887 47.826 0.00 0.00 0.00 4.18
412 415 3.132289 ACACACATCACCCTATAACTCGG 59.868 47.826 0.00 0.00 0.00 4.63
413 416 2.698797 ACACATCACCCTATAACTCGGG 59.301 50.000 0.00 0.00 46.26 5.14
426 429 9.734984 CCCTATAACTCGGGTTTATGAATTATT 57.265 33.333 5.71 0.00 36.92 1.40
458 461 7.573968 AATTCAAACCCTTATGACTATGAGC 57.426 36.000 0.00 0.00 0.00 4.26
459 462 5.036117 TCAAACCCTTATGACTATGAGCC 57.964 43.478 0.00 0.00 0.00 4.70
460 463 4.473196 TCAAACCCTTATGACTATGAGCCA 59.527 41.667 0.00 0.00 0.00 4.75
461 464 5.045213 TCAAACCCTTATGACTATGAGCCAA 60.045 40.000 0.00 0.00 0.00 4.52
462 465 4.423625 ACCCTTATGACTATGAGCCAAC 57.576 45.455 0.00 0.00 0.00 3.77
463 466 3.780294 ACCCTTATGACTATGAGCCAACA 59.220 43.478 0.00 0.00 0.00 3.33
464 467 4.227300 ACCCTTATGACTATGAGCCAACAA 59.773 41.667 0.00 0.00 0.00 2.83
465 468 5.103940 ACCCTTATGACTATGAGCCAACAAT 60.104 40.000 0.00 0.00 0.00 2.71
466 469 6.101150 ACCCTTATGACTATGAGCCAACAATA 59.899 38.462 0.00 0.00 0.00 1.90
467 470 6.428159 CCCTTATGACTATGAGCCAACAATAC 59.572 42.308 0.00 0.00 0.00 1.89
468 471 7.220030 CCTTATGACTATGAGCCAACAATACT 58.780 38.462 0.00 0.00 0.00 2.12
469 472 8.367911 CCTTATGACTATGAGCCAACAATACTA 58.632 37.037 0.00 0.00 0.00 1.82
470 473 9.416794 CTTATGACTATGAGCCAACAATACTAG 57.583 37.037 0.00 0.00 0.00 2.57
471 474 6.161855 TGACTATGAGCCAACAATACTAGG 57.838 41.667 0.00 0.00 0.00 3.02
472 475 5.897250 TGACTATGAGCCAACAATACTAGGA 59.103 40.000 0.00 0.00 0.00 2.94
473 476 6.382859 TGACTATGAGCCAACAATACTAGGAA 59.617 38.462 0.00 0.00 0.00 3.36
474 477 7.093068 TGACTATGAGCCAACAATACTAGGAAA 60.093 37.037 0.00 0.00 0.00 3.13
475 478 7.630082 ACTATGAGCCAACAATACTAGGAAAA 58.370 34.615 0.00 0.00 0.00 2.29
476 479 6.759497 ATGAGCCAACAATACTAGGAAAAC 57.241 37.500 0.00 0.00 0.00 2.43
477 480 5.007682 TGAGCCAACAATACTAGGAAAACC 58.992 41.667 0.00 0.00 0.00 3.27
478 481 4.341487 AGCCAACAATACTAGGAAAACCC 58.659 43.478 0.00 0.00 0.00 4.11
479 482 3.446161 GCCAACAATACTAGGAAAACCCC 59.554 47.826 0.00 0.00 34.66 4.95
480 483 4.813133 GCCAACAATACTAGGAAAACCCCT 60.813 45.833 0.00 0.00 40.29 4.79
481 484 5.574120 GCCAACAATACTAGGAAAACCCCTA 60.574 44.000 0.00 0.00 37.74 3.53
482 485 6.669631 CCAACAATACTAGGAAAACCCCTAT 58.330 40.000 0.00 0.00 38.08 2.57
483 486 7.638638 GCCAACAATACTAGGAAAACCCCTATA 60.639 40.741 0.00 0.00 38.08 1.31
484 487 7.937394 CCAACAATACTAGGAAAACCCCTATAG 59.063 40.741 0.00 0.00 38.08 1.31
485 488 7.628501 ACAATACTAGGAAAACCCCTATAGG 57.371 40.000 12.27 12.27 38.08 2.57
486 489 6.044054 ACAATACTAGGAAAACCCCTATAGGC 59.956 42.308 13.85 0.00 38.08 3.93
487 490 4.016962 ACTAGGAAAACCCCTATAGGCA 57.983 45.455 13.85 0.00 38.08 4.75
488 491 4.377134 ACTAGGAAAACCCCTATAGGCAA 58.623 43.478 13.85 0.00 38.08 4.52
489 492 3.664551 AGGAAAACCCCTATAGGCAAC 57.335 47.619 13.85 1.37 34.07 4.17
490 493 2.243994 AGGAAAACCCCTATAGGCAACC 59.756 50.000 13.85 9.73 34.07 3.77
491 494 2.024751 GGAAAACCCCTATAGGCAACCA 60.025 50.000 13.85 0.00 37.17 3.67
492 495 2.820728 AAACCCCTATAGGCAACCAC 57.179 50.000 13.85 0.00 37.17 4.16
493 496 1.676248 AACCCCTATAGGCAACCACA 58.324 50.000 13.85 0.00 37.17 4.17
494 497 1.907240 ACCCCTATAGGCAACCACAT 58.093 50.000 13.85 0.00 37.17 3.21
495 498 3.069084 ACCCCTATAGGCAACCACATA 57.931 47.619 13.85 0.00 37.17 2.29
496 499 3.399454 ACCCCTATAGGCAACCACATAA 58.601 45.455 13.85 0.00 37.17 1.90
497 500 3.987501 ACCCCTATAGGCAACCACATAAT 59.012 43.478 13.85 0.00 37.17 1.28
498 501 5.167164 ACCCCTATAGGCAACCACATAATA 58.833 41.667 13.85 0.00 37.17 0.98
499 502 5.250774 ACCCCTATAGGCAACCACATAATAG 59.749 44.000 13.85 0.00 37.17 1.73
500 503 5.250774 CCCCTATAGGCAACCACATAATAGT 59.749 44.000 13.85 0.00 37.17 2.12
501 504 6.173339 CCCTATAGGCAACCACATAATAGTG 58.827 44.000 13.85 0.00 39.21 2.74
508 511 2.234613 CACATAATAGTGGCGCGGG 58.765 57.895 8.83 0.00 35.88 6.13
509 512 0.531974 CACATAATAGTGGCGCGGGT 60.532 55.000 8.83 0.00 35.88 5.28
510 513 0.179468 ACATAATAGTGGCGCGGGTT 59.821 50.000 8.83 0.00 0.00 4.11
511 514 1.413445 ACATAATAGTGGCGCGGGTTA 59.587 47.619 8.83 0.00 0.00 2.85
512 515 1.796459 CATAATAGTGGCGCGGGTTAC 59.204 52.381 8.83 0.65 0.00 2.50
513 516 1.113788 TAATAGTGGCGCGGGTTACT 58.886 50.000 8.83 13.39 0.00 2.24
514 517 1.113788 AATAGTGGCGCGGGTTACTA 58.886 50.000 8.83 16.05 0.00 1.82
515 518 0.672342 ATAGTGGCGCGGGTTACTAG 59.328 55.000 8.83 0.00 0.00 2.57
516 519 1.386525 TAGTGGCGCGGGTTACTAGG 61.387 60.000 8.83 0.00 0.00 3.02
517 520 3.463585 TGGCGCGGGTTACTAGGG 61.464 66.667 8.83 0.00 0.00 3.53
518 521 4.904900 GGCGCGGGTTACTAGGGC 62.905 72.222 8.83 9.93 42.10 5.19
519 522 4.904900 GCGCGGGTTACTAGGGCC 62.905 72.222 8.83 0.00 37.79 5.80
520 523 4.580551 CGCGGGTTACTAGGGCCG 62.581 72.222 0.00 0.00 0.00 6.13
521 524 3.464494 GCGGGTTACTAGGGCCGT 61.464 66.667 2.24 2.24 0.00 5.68
522 525 2.497770 CGGGTTACTAGGGCCGTG 59.502 66.667 8.57 0.59 0.00 4.94
523 526 2.188731 GGGTTACTAGGGCCGTGC 59.811 66.667 8.57 0.00 0.00 5.34
524 527 2.364780 GGGTTACTAGGGCCGTGCT 61.365 63.158 8.57 0.00 0.00 4.40
525 528 1.044790 GGGTTACTAGGGCCGTGCTA 61.045 60.000 8.57 0.00 0.00 3.49
526 529 0.103755 GGTTACTAGGGCCGTGCTAC 59.896 60.000 8.57 0.96 0.00 3.58
527 530 1.109609 GTTACTAGGGCCGTGCTACT 58.890 55.000 8.57 0.00 0.00 2.57
528 531 1.108776 TTACTAGGGCCGTGCTACTG 58.891 55.000 8.57 0.00 0.00 2.74
529 532 1.389609 TACTAGGGCCGTGCTACTGC 61.390 60.000 8.57 0.00 40.20 4.40
530 533 2.363795 TAGGGCCGTGCTACTGCT 60.364 61.111 8.57 0.00 40.48 4.24
531 534 1.076559 TAGGGCCGTGCTACTGCTA 60.077 57.895 8.57 0.00 40.48 3.49
532 535 1.389609 TAGGGCCGTGCTACTGCTAC 61.390 60.000 8.57 0.00 40.48 3.58
533 536 2.202892 GGCCGTGCTACTGCTACC 60.203 66.667 0.00 0.00 40.48 3.18
534 537 2.722201 GGCCGTGCTACTGCTACCT 61.722 63.158 0.00 0.00 40.48 3.08
535 538 1.389609 GGCCGTGCTACTGCTACCTA 61.390 60.000 0.00 0.00 40.48 3.08
536 539 0.458669 GCCGTGCTACTGCTACCTAA 59.541 55.000 0.00 0.00 40.48 2.69
537 540 1.068741 GCCGTGCTACTGCTACCTAAT 59.931 52.381 0.00 0.00 40.48 1.73
538 541 2.295349 GCCGTGCTACTGCTACCTAATA 59.705 50.000 0.00 0.00 40.48 0.98
539 542 3.612004 GCCGTGCTACTGCTACCTAATAG 60.612 52.174 0.00 0.00 40.48 1.73
540 543 3.568853 CCGTGCTACTGCTACCTAATAGT 59.431 47.826 0.00 0.00 40.48 2.12
541 544 4.758674 CCGTGCTACTGCTACCTAATAGTA 59.241 45.833 0.00 0.00 40.48 1.82
542 545 5.106634 CCGTGCTACTGCTACCTAATAGTAG 60.107 48.000 0.00 0.00 46.24 2.57
562 565 0.235404 CGCAAGCAAACAAAATGGGC 59.765 50.000 0.00 0.00 0.00 5.36
563 566 1.596603 GCAAGCAAACAAAATGGGCT 58.403 45.000 0.00 0.00 36.13 5.19
564 567 2.765122 GCAAGCAAACAAAATGGGCTA 58.235 42.857 0.00 0.00 33.80 3.93
565 568 2.480037 GCAAGCAAACAAAATGGGCTAC 59.520 45.455 0.00 0.00 33.80 3.58
566 569 3.066380 CAAGCAAACAAAATGGGCTACC 58.934 45.455 0.00 0.00 33.80 3.18
567 570 1.272212 AGCAAACAAAATGGGCTACCG 59.728 47.619 0.00 0.00 40.75 4.02
568 571 1.271102 GCAAACAAAATGGGCTACCGA 59.729 47.619 0.00 0.00 40.75 4.69
569 572 2.094234 GCAAACAAAATGGGCTACCGAT 60.094 45.455 0.00 0.00 40.75 4.18
570 573 3.129638 GCAAACAAAATGGGCTACCGATA 59.870 43.478 0.00 0.00 40.75 2.92
571 574 4.202111 GCAAACAAAATGGGCTACCGATAT 60.202 41.667 0.00 0.00 40.75 1.63
572 575 5.280945 CAAACAAAATGGGCTACCGATATG 58.719 41.667 0.00 0.00 40.75 1.78
573 576 2.884639 ACAAAATGGGCTACCGATATGC 59.115 45.455 0.00 0.00 40.75 3.14
574 577 3.149196 CAAAATGGGCTACCGATATGCT 58.851 45.455 0.00 0.00 40.75 3.79
575 578 3.508845 AAATGGGCTACCGATATGCTT 57.491 42.857 0.00 0.00 40.75 3.91
576 579 3.508845 AATGGGCTACCGATATGCTTT 57.491 42.857 0.00 0.00 40.75 3.51
577 580 4.634012 AATGGGCTACCGATATGCTTTA 57.366 40.909 0.00 0.00 40.75 1.85
578 581 3.678056 TGGGCTACCGATATGCTTTAG 57.322 47.619 0.00 0.00 40.75 1.85
579 582 2.969950 TGGGCTACCGATATGCTTTAGT 59.030 45.455 0.00 0.00 40.75 2.24
580 583 4.154176 TGGGCTACCGATATGCTTTAGTA 58.846 43.478 0.00 0.00 40.75 1.82
581 584 4.219944 TGGGCTACCGATATGCTTTAGTAG 59.780 45.833 0.00 0.00 40.75 2.57
591 594 3.525619 CTTTAGTAGCACGGGCACA 57.474 52.632 14.57 0.00 44.61 4.57
592 595 1.359848 CTTTAGTAGCACGGGCACAG 58.640 55.000 14.57 0.00 44.61 3.66
593 596 0.970640 TTTAGTAGCACGGGCACAGA 59.029 50.000 14.57 0.00 44.61 3.41
594 597 0.970640 TTAGTAGCACGGGCACAGAA 59.029 50.000 14.57 4.09 44.61 3.02
595 598 0.970640 TAGTAGCACGGGCACAGAAA 59.029 50.000 14.57 0.00 44.61 2.52
596 599 0.320771 AGTAGCACGGGCACAGAAAG 60.321 55.000 14.57 0.00 44.61 2.62
597 600 1.671054 TAGCACGGGCACAGAAAGC 60.671 57.895 14.57 0.00 44.61 3.51
612 615 4.247781 AGCCCGCGCTACTACTAA 57.752 55.556 5.56 0.00 46.08 2.24
613 616 2.031360 AGCCCGCGCTACTACTAAG 58.969 57.895 5.56 0.00 46.08 2.18
614 617 0.750911 AGCCCGCGCTACTACTAAGT 60.751 55.000 5.56 0.00 46.08 2.24
615 618 0.594284 GCCCGCGCTACTACTAAGTG 60.594 60.000 5.56 0.00 36.36 3.16
616 619 0.030369 CCCGCGCTACTACTAAGTGG 59.970 60.000 5.56 0.00 36.36 4.00
617 620 0.737219 CCGCGCTACTACTAAGTGGT 59.263 55.000 5.56 0.00 36.62 4.16
618 621 1.268437 CCGCGCTACTACTAAGTGGTC 60.268 57.143 5.56 0.00 36.62 4.02
619 622 1.268437 CGCGCTACTACTAAGTGGTCC 60.268 57.143 5.56 0.00 36.62 4.46
620 623 1.066757 GCGCTACTACTAAGTGGTCCC 59.933 57.143 0.00 0.00 36.62 4.46
621 624 1.680207 CGCTACTACTAAGTGGTCCCC 59.320 57.143 0.00 0.00 36.62 4.81
622 625 2.743553 GCTACTACTAAGTGGTCCCCA 58.256 52.381 0.00 0.00 36.62 4.96
623 626 3.306613 GCTACTACTAAGTGGTCCCCAT 58.693 50.000 0.00 0.00 36.62 4.00
624 627 3.321396 GCTACTACTAAGTGGTCCCCATC 59.679 52.174 0.00 0.00 36.62 3.51
625 628 3.484953 ACTACTAAGTGGTCCCCATCA 57.515 47.619 0.00 0.00 35.28 3.07
626 629 4.008916 ACTACTAAGTGGTCCCCATCAT 57.991 45.455 0.00 0.00 35.28 2.45
627 630 3.711704 ACTACTAAGTGGTCCCCATCATG 59.288 47.826 0.00 0.00 35.28 3.07
628 631 2.562296 ACTAAGTGGTCCCCATCATGT 58.438 47.619 0.00 0.00 35.28 3.21
629 632 2.505819 ACTAAGTGGTCCCCATCATGTC 59.494 50.000 0.00 0.00 35.28 3.06
630 633 0.625849 AAGTGGTCCCCATCATGTCC 59.374 55.000 0.00 0.00 35.28 4.02
631 634 1.227383 GTGGTCCCCATCATGTCCC 59.773 63.158 0.00 0.00 35.28 4.46
632 635 1.230116 TGGTCCCCATCATGTCCCA 60.230 57.895 0.00 0.00 0.00 4.37
633 636 0.848648 TGGTCCCCATCATGTCCCAA 60.849 55.000 0.00 0.00 0.00 4.12
634 637 0.395724 GGTCCCCATCATGTCCCAAC 60.396 60.000 0.00 0.00 0.00 3.77
635 638 0.748005 GTCCCCATCATGTCCCAACG 60.748 60.000 0.00 0.00 0.00 4.10
636 639 0.912006 TCCCCATCATGTCCCAACGA 60.912 55.000 0.00 0.00 0.00 3.85
637 640 0.034574 CCCCATCATGTCCCAACGAA 60.035 55.000 0.00 0.00 0.00 3.85
638 641 1.410083 CCCCATCATGTCCCAACGAAT 60.410 52.381 0.00 0.00 0.00 3.34
639 642 1.677576 CCCATCATGTCCCAACGAATG 59.322 52.381 0.00 0.00 0.00 2.67
648 651 3.853104 CCAACGAATGGGCACTAGA 57.147 52.632 0.00 0.00 46.27 2.43
649 652 2.332063 CCAACGAATGGGCACTAGAT 57.668 50.000 0.00 0.00 46.27 1.98
650 653 2.643551 CCAACGAATGGGCACTAGATT 58.356 47.619 0.00 0.00 46.27 2.40
651 654 2.355756 CCAACGAATGGGCACTAGATTG 59.644 50.000 0.00 0.00 46.27 2.67
652 655 3.270027 CAACGAATGGGCACTAGATTGA 58.730 45.455 0.00 0.00 0.00 2.57
653 656 3.185246 ACGAATGGGCACTAGATTGAG 57.815 47.619 0.00 0.00 0.00 3.02
654 657 2.766263 ACGAATGGGCACTAGATTGAGA 59.234 45.455 0.00 0.00 0.00 3.27
655 658 3.181471 ACGAATGGGCACTAGATTGAGAG 60.181 47.826 0.00 0.00 0.00 3.20
656 659 3.181471 CGAATGGGCACTAGATTGAGAGT 60.181 47.826 0.00 0.00 0.00 3.24
657 660 3.834489 ATGGGCACTAGATTGAGAGTG 57.166 47.619 0.00 0.00 44.88 3.51
666 669 6.442952 CACTAGATTGAGAGTGCATACTACC 58.557 44.000 0.00 0.00 36.91 3.18
667 670 4.946478 AGATTGAGAGTGCATACTACCC 57.054 45.455 0.00 0.00 37.25 3.69
668 671 3.319405 AGATTGAGAGTGCATACTACCCG 59.681 47.826 0.00 0.00 37.25 5.28
669 672 2.430248 TGAGAGTGCATACTACCCGA 57.570 50.000 0.00 0.00 37.25 5.14
670 673 2.730382 TGAGAGTGCATACTACCCGAA 58.270 47.619 0.00 0.00 37.25 4.30
671 674 3.296854 TGAGAGTGCATACTACCCGAAT 58.703 45.455 0.00 0.00 37.25 3.34
672 675 3.704566 TGAGAGTGCATACTACCCGAATT 59.295 43.478 0.00 0.00 37.25 2.17
673 676 4.202121 TGAGAGTGCATACTACCCGAATTC 60.202 45.833 0.00 0.00 37.25 2.17
674 677 3.704566 AGAGTGCATACTACCCGAATTCA 59.295 43.478 6.22 0.00 37.25 2.57
675 678 4.161565 AGAGTGCATACTACCCGAATTCAA 59.838 41.667 6.22 0.00 37.25 2.69
676 679 4.839121 AGTGCATACTACCCGAATTCAAA 58.161 39.130 6.22 0.00 34.74 2.69
677 680 5.250200 AGTGCATACTACCCGAATTCAAAA 58.750 37.500 6.22 0.00 34.74 2.44
678 681 5.708230 AGTGCATACTACCCGAATTCAAAAA 59.292 36.000 6.22 0.00 34.74 1.94
702 705 3.756082 AAATGGGAGTATTTGGCCTGA 57.244 42.857 3.32 0.00 0.00 3.86
767 770 6.601613 TCAATAAAAGCAAAGGACGATGGTAT 59.398 34.615 0.00 0.00 0.00 2.73
769 772 5.813080 AAAAGCAAAGGACGATGGTATAC 57.187 39.130 0.00 0.00 0.00 1.47
770 773 4.755266 AAGCAAAGGACGATGGTATACT 57.245 40.909 2.25 0.00 0.00 2.12
771 774 5.864418 AAGCAAAGGACGATGGTATACTA 57.136 39.130 2.25 0.00 0.00 1.82
772 775 5.455056 AGCAAAGGACGATGGTATACTAG 57.545 43.478 2.25 0.00 0.00 2.57
775 778 5.770417 CAAAGGACGATGGTATACTAGTCC 58.230 45.833 21.01 21.01 46.06 3.85
777 780 2.746362 GGACGATGGTATACTAGTCCGG 59.254 54.545 17.10 0.00 38.72 5.14
778 781 2.746362 GACGATGGTATACTAGTCCGGG 59.254 54.545 0.00 0.00 0.00 5.73
779 782 2.107204 ACGATGGTATACTAGTCCGGGT 59.893 50.000 0.00 0.00 0.00 5.28
780 783 3.327757 ACGATGGTATACTAGTCCGGGTA 59.672 47.826 0.00 0.00 0.00 3.69
781 784 3.937706 CGATGGTATACTAGTCCGGGTAG 59.062 52.174 0.00 5.88 0.00 3.18
782 785 4.323028 CGATGGTATACTAGTCCGGGTAGA 60.323 50.000 16.18 0.00 0.00 2.59
783 786 5.564550 GATGGTATACTAGTCCGGGTAGAA 58.435 45.833 16.18 1.99 0.00 2.10
784 787 5.589367 TGGTATACTAGTCCGGGTAGAAT 57.411 43.478 16.18 1.08 0.00 2.40
785 788 6.702449 TGGTATACTAGTCCGGGTAGAATA 57.298 41.667 16.18 2.78 0.00 1.75
786 789 7.276088 TGGTATACTAGTCCGGGTAGAATAT 57.724 40.000 16.18 8.59 0.00 1.28
787 790 8.392631 TGGTATACTAGTCCGGGTAGAATATA 57.607 38.462 16.18 7.84 0.00 0.86
788 791 9.007494 TGGTATACTAGTCCGGGTAGAATATAT 57.993 37.037 16.18 7.79 0.00 0.86
789 792 9.859152 GGTATACTAGTCCGGGTAGAATATATT 57.141 37.037 16.18 0.00 0.00 1.28
794 797 9.240734 ACTAGTCCGGGTAGAATATATTTACAG 57.759 37.037 16.18 3.64 0.00 2.74
795 798 6.932947 AGTCCGGGTAGAATATATTTACAGC 58.067 40.000 0.00 0.00 0.00 4.40
796 799 5.803967 GTCCGGGTAGAATATATTTACAGCG 59.196 44.000 0.00 0.00 0.00 5.18
797 800 5.477984 TCCGGGTAGAATATATTTACAGCGT 59.522 40.000 0.00 0.00 0.00 5.07
798 801 6.015180 TCCGGGTAGAATATATTTACAGCGTT 60.015 38.462 0.00 0.00 0.00 4.84
799 802 7.176515 TCCGGGTAGAATATATTTACAGCGTTA 59.823 37.037 0.00 0.00 0.00 3.18
800 803 7.814107 CCGGGTAGAATATATTTACAGCGTTAA 59.186 37.037 0.00 0.00 0.00 2.01
801 804 9.362539 CGGGTAGAATATATTTACAGCGTTAAT 57.637 33.333 0.00 0.30 0.00 1.40
811 814 9.769093 ATATTTACAGCGTTAATGTTTGAAGTC 57.231 29.630 7.90 0.00 32.02 3.01
812 815 4.483476 ACAGCGTTAATGTTTGAAGTCC 57.517 40.909 7.90 0.00 0.00 3.85
813 816 3.059188 ACAGCGTTAATGTTTGAAGTCCG 60.059 43.478 7.90 0.00 0.00 4.79
814 817 2.482721 AGCGTTAATGTTTGAAGTCCGG 59.517 45.455 0.00 0.00 0.00 5.14
815 818 2.846693 CGTTAATGTTTGAAGTCCGGC 58.153 47.619 0.00 0.00 0.00 6.13
816 819 2.482721 CGTTAATGTTTGAAGTCCGGCT 59.517 45.455 0.00 0.00 0.00 5.52
817 820 3.058501 CGTTAATGTTTGAAGTCCGGCTT 60.059 43.478 10.37 10.37 40.76 4.35
818 821 4.226761 GTTAATGTTTGAAGTCCGGCTTG 58.773 43.478 14.63 0.00 37.59 4.01
819 822 1.247567 ATGTTTGAAGTCCGGCTTGG 58.752 50.000 14.63 0.00 37.59 3.61
820 823 1.285950 GTTTGAAGTCCGGCTTGGC 59.714 57.895 14.63 3.78 37.59 4.52
821 824 2.258013 TTTGAAGTCCGGCTTGGCG 61.258 57.895 14.63 9.64 37.59 5.69
822 825 2.951475 TTTGAAGTCCGGCTTGGCGT 62.951 55.000 14.63 0.00 37.59 5.68
823 826 2.102109 TTGAAGTCCGGCTTGGCGTA 62.102 55.000 14.63 0.00 37.59 4.42
824 827 1.375013 GAAGTCCGGCTTGGCGTAA 60.375 57.895 14.63 0.76 37.59 3.18
825 828 0.952010 GAAGTCCGGCTTGGCGTAAA 60.952 55.000 14.63 0.00 37.59 2.01
826 829 0.535553 AAGTCCGGCTTGGCGTAAAA 60.536 50.000 15.00 0.00 35.80 1.52
827 830 0.535553 AGTCCGGCTTGGCGTAAAAA 60.536 50.000 15.00 0.00 37.80 1.94
903 908 6.324042 CGTGTAGGTTTAGGTTTTGTGTTTT 58.676 36.000 0.00 0.00 0.00 2.43
1023 1032 4.394729 TGGAAACGTCTCTTTTAATGCCT 58.605 39.130 0.00 0.00 0.00 4.75
1104 1113 2.446435 CTCGGTCCCCAAATCAACATT 58.554 47.619 0.00 0.00 0.00 2.71
1125 1134 3.224324 GAGGATGGCGCCGGAGTA 61.224 66.667 23.90 3.26 0.00 2.59
1197 1206 4.722700 GCACGGACCCATGCCAGT 62.723 66.667 4.32 0.00 35.73 4.00
1258 1267 0.946221 GCCGGACAGCGAAGATATGG 60.946 60.000 5.05 0.00 0.00 2.74
1427 1439 0.958382 TTCCATTACGGCAGCACACC 60.958 55.000 0.00 0.00 33.14 4.16
1439 1451 0.944311 AGCACACCGATCACGTTCAC 60.944 55.000 0.00 0.00 37.88 3.18
1504 1519 0.108615 CTCCCTTGGACACTACAGCG 60.109 60.000 0.00 0.00 0.00 5.18
1530 1545 0.846015 TCCTGATTGATTCCCGCCAT 59.154 50.000 0.00 0.00 0.00 4.40
1549 1564 2.263540 GCCGCGTCCTGGTCTTAA 59.736 61.111 4.92 0.00 0.00 1.85
1823 1838 6.813649 TCAACAGTAGCTTCAGATGATACAAC 59.186 38.462 12.77 0.00 0.00 3.32
1960 1975 2.619074 GGGCCTCCAGGTATGAATATGC 60.619 54.545 0.84 0.00 37.57 3.14
2406 2421 3.902261 TTCTCGCGTACAGTTCTTGTA 57.098 42.857 5.77 0.00 41.29 2.41
2416 2431 9.910511 CGCGTACAGTTCTTGTAATTATTAAAT 57.089 29.630 0.00 0.00 43.61 1.40
2439 2455 6.642683 TGTTCGCTTATAGCTTGAACTTAC 57.357 37.500 15.48 0.00 40.15 2.34
2602 2727 1.340308 TGGCTGGTTGACATGATGAGG 60.340 52.381 0.00 0.00 0.00 3.86
2632 2760 5.290493 TCGCATGAGGAAATGTATAGGTT 57.710 39.130 0.00 0.00 0.00 3.50
2638 2766 7.864379 GCATGAGGAAATGTATAGGTTCATTTG 59.136 37.037 0.00 0.00 42.05 2.32
2643 2771 9.533831 AGGAAATGTATAGGTTCATTTGTCTTT 57.466 29.630 7.66 0.00 42.05 2.52
2745 2873 9.783256 GGTTTTGTTTTACCTATTGCTAGTATG 57.217 33.333 0.00 0.00 0.00 2.39
2752 2880 9.650714 TTTTACCTATTGCTAGTATGGAGACTA 57.349 33.333 0.00 0.00 0.00 2.59
2885 3015 9.123902 TCTCATATCCATTTGTCTTTATTGTGG 57.876 33.333 0.00 0.00 0.00 4.17
2902 3032 9.838339 TTTATTGTGGGATTGTTGTTAATTGTT 57.162 25.926 0.00 0.00 0.00 2.83
2922 3052 6.605471 TGTTGGAGTTCTTATGCTTCTAGA 57.395 37.500 0.00 0.00 0.00 2.43
2993 3196 2.095314 TGTGGTTTGATGCTAATGTGCG 60.095 45.455 0.00 0.00 35.36 5.34
3083 3296 4.338012 TGGATAATATTCATGGCTGCCAG 58.662 43.478 27.20 17.96 36.75 4.85
3233 3447 7.776933 TGTATCATAAGTGAATTCTGCAGAC 57.223 36.000 18.03 5.82 38.01 3.51
3238 3452 2.693069 AGTGAATTCTGCAGACCTTCG 58.307 47.619 18.03 0.00 0.00 3.79
3251 3465 4.245660 CAGACCTTCGACATGTTGTATGT 58.754 43.478 12.90 6.66 34.52 2.29
3289 3503 5.812652 TGTTTTGGACGTTTCACATTCTAC 58.187 37.500 0.00 0.00 0.00 2.59
3314 3599 9.150348 ACAAGTTCAAAGAAATGTAAAAGGTTG 57.850 29.630 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.679680 TCACCGGCCGAGACTATTAAG 59.320 52.381 30.73 8.09 0.00 1.85
1 2 1.766494 TCACCGGCCGAGACTATTAA 58.234 50.000 30.73 0.00 0.00 1.40
56 57 8.784043 AGAAAGTTATTAGATGAACACAACCAC 58.216 33.333 0.00 0.00 0.00 4.16
99 100 5.990408 AGACAAATCATGTGAAACGTCTTC 58.010 37.500 0.00 0.00 44.12 2.87
265 268 5.238432 CAGTCATGTACAAGCCTTGTGTTTA 59.762 40.000 20.12 4.13 45.03 2.01
274 277 3.433615 GTCAGAACAGTCATGTACAAGCC 59.566 47.826 0.00 0.00 39.29 4.35
287 290 9.376075 AGATACAAAACTATCATGTCAGAACAG 57.624 33.333 0.00 0.00 39.20 3.16
351 354 2.949030 GCATGTGCGCGTGTGTGTA 61.949 57.895 20.06 0.00 34.24 2.90
352 355 4.312231 GCATGTGCGCGTGTGTGT 62.312 61.111 20.06 0.00 34.24 3.72
375 378 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
376 379 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
377 380 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
378 381 0.451383 ATGTGTGTGTGTGTGTGTGC 59.549 50.000 0.00 0.00 0.00 4.57
379 382 1.736681 TGATGTGTGTGTGTGTGTGTG 59.263 47.619 0.00 0.00 0.00 3.82
380 383 1.737236 GTGATGTGTGTGTGTGTGTGT 59.263 47.619 0.00 0.00 0.00 3.72
381 384 1.063912 GGTGATGTGTGTGTGTGTGTG 59.936 52.381 0.00 0.00 0.00 3.82
382 385 1.378531 GGTGATGTGTGTGTGTGTGT 58.621 50.000 0.00 0.00 0.00 3.72
383 386 0.662619 GGGTGATGTGTGTGTGTGTG 59.337 55.000 0.00 0.00 0.00 3.82
384 387 0.546122 AGGGTGATGTGTGTGTGTGT 59.454 50.000 0.00 0.00 0.00 3.72
385 388 2.542020 TAGGGTGATGTGTGTGTGTG 57.458 50.000 0.00 0.00 0.00 3.82
386 389 4.286032 AGTTATAGGGTGATGTGTGTGTGT 59.714 41.667 0.00 0.00 0.00 3.72
387 390 4.832248 AGTTATAGGGTGATGTGTGTGTG 58.168 43.478 0.00 0.00 0.00 3.82
388 391 4.381612 CGAGTTATAGGGTGATGTGTGTGT 60.382 45.833 0.00 0.00 0.00 3.72
389 392 4.112634 CGAGTTATAGGGTGATGTGTGTG 58.887 47.826 0.00 0.00 0.00 3.82
390 393 3.132289 CCGAGTTATAGGGTGATGTGTGT 59.868 47.826 0.00 0.00 0.00 3.72
391 394 3.492656 CCCGAGTTATAGGGTGATGTGTG 60.493 52.174 0.00 0.00 42.67 3.82
392 395 2.698797 CCCGAGTTATAGGGTGATGTGT 59.301 50.000 0.00 0.00 42.67 3.72
393 396 3.386768 CCCGAGTTATAGGGTGATGTG 57.613 52.381 0.00 0.00 42.67 3.21
432 435 9.120538 GCTCATAGTCATAAGGGTTTGAATTAA 57.879 33.333 0.00 0.00 0.00 1.40
433 436 7.719633 GGCTCATAGTCATAAGGGTTTGAATTA 59.280 37.037 0.00 0.00 0.00 1.40
434 437 6.547510 GGCTCATAGTCATAAGGGTTTGAATT 59.452 38.462 0.00 0.00 0.00 2.17
435 438 6.064717 GGCTCATAGTCATAAGGGTTTGAAT 58.935 40.000 0.00 0.00 0.00 2.57
436 439 5.045213 TGGCTCATAGTCATAAGGGTTTGAA 60.045 40.000 0.00 0.00 0.00 2.69
437 440 4.473196 TGGCTCATAGTCATAAGGGTTTGA 59.527 41.667 0.00 0.00 0.00 2.69
438 441 4.780815 TGGCTCATAGTCATAAGGGTTTG 58.219 43.478 0.00 0.00 0.00 2.93
439 442 5.193679 GTTGGCTCATAGTCATAAGGGTTT 58.806 41.667 0.00 0.00 25.43 3.27
440 443 4.227300 TGTTGGCTCATAGTCATAAGGGTT 59.773 41.667 0.00 0.00 25.43 4.11
441 444 3.780294 TGTTGGCTCATAGTCATAAGGGT 59.220 43.478 0.00 0.00 25.43 4.34
442 445 4.422073 TGTTGGCTCATAGTCATAAGGG 57.578 45.455 0.00 0.00 25.43 3.95
443 446 7.220030 AGTATTGTTGGCTCATAGTCATAAGG 58.780 38.462 0.00 0.00 25.43 2.69
444 447 9.416794 CTAGTATTGTTGGCTCATAGTCATAAG 57.583 37.037 0.00 0.00 25.43 1.73
445 448 8.367911 CCTAGTATTGTTGGCTCATAGTCATAA 58.632 37.037 0.00 0.00 25.43 1.90
446 449 7.728532 TCCTAGTATTGTTGGCTCATAGTCATA 59.271 37.037 0.00 0.00 25.43 2.15
447 450 6.554982 TCCTAGTATTGTTGGCTCATAGTCAT 59.445 38.462 0.00 0.00 25.43 3.06
448 451 5.897250 TCCTAGTATTGTTGGCTCATAGTCA 59.103 40.000 0.00 0.00 0.00 3.41
449 452 6.406692 TCCTAGTATTGTTGGCTCATAGTC 57.593 41.667 0.00 0.00 0.00 2.59
450 453 6.808321 TTCCTAGTATTGTTGGCTCATAGT 57.192 37.500 0.00 0.00 0.00 2.12
451 454 7.012421 GGTTTTCCTAGTATTGTTGGCTCATAG 59.988 40.741 0.00 0.00 36.94 2.23
452 455 6.826741 GGTTTTCCTAGTATTGTTGGCTCATA 59.173 38.462 0.00 0.00 36.94 2.15
453 456 5.652452 GGTTTTCCTAGTATTGTTGGCTCAT 59.348 40.000 0.00 0.00 36.94 2.90
454 457 5.007682 GGTTTTCCTAGTATTGTTGGCTCA 58.992 41.667 0.00 0.00 36.94 4.26
455 458 4.398358 GGGTTTTCCTAGTATTGTTGGCTC 59.602 45.833 0.00 0.00 40.46 4.70
456 459 4.341487 GGGTTTTCCTAGTATTGTTGGCT 58.659 43.478 0.00 0.00 40.46 4.75
457 460 3.446161 GGGGTTTTCCTAGTATTGTTGGC 59.554 47.826 0.00 0.00 40.46 4.52
458 461 4.930696 AGGGGTTTTCCTAGTATTGTTGG 58.069 43.478 0.00 0.00 40.46 3.77
459 462 7.937394 CCTATAGGGGTTTTCCTAGTATTGTTG 59.063 40.741 11.33 0.00 42.11 3.33
460 463 7.421030 GCCTATAGGGGTTTTCCTAGTATTGTT 60.421 40.741 20.58 0.00 42.11 2.83
461 464 6.044054 GCCTATAGGGGTTTTCCTAGTATTGT 59.956 42.308 20.58 0.00 42.11 2.71
462 465 6.043938 TGCCTATAGGGGTTTTCCTAGTATTG 59.956 42.308 20.58 0.00 42.11 1.90
463 466 6.155367 TGCCTATAGGGGTTTTCCTAGTATT 58.845 40.000 20.58 0.00 42.11 1.89
464 467 5.734078 TGCCTATAGGGGTTTTCCTAGTAT 58.266 41.667 20.58 0.00 42.11 2.12
465 468 5.160511 TGCCTATAGGGGTTTTCCTAGTA 57.839 43.478 20.58 0.00 42.11 1.82
466 469 4.016962 TGCCTATAGGGGTTTTCCTAGT 57.983 45.455 20.58 0.00 42.11 2.57
467 470 4.445879 GGTTGCCTATAGGGGTTTTCCTAG 60.446 50.000 20.58 0.00 42.11 3.02
468 471 3.460712 GGTTGCCTATAGGGGTTTTCCTA 59.539 47.826 20.58 0.00 42.91 2.94
469 472 2.243994 GGTTGCCTATAGGGGTTTTCCT 59.756 50.000 20.58 0.00 40.46 3.36
470 473 2.024751 TGGTTGCCTATAGGGGTTTTCC 60.025 50.000 20.58 2.26 39.75 3.13
471 474 3.021695 GTGGTTGCCTATAGGGGTTTTC 58.978 50.000 20.58 2.99 35.18 2.29
472 475 2.380590 TGTGGTTGCCTATAGGGGTTTT 59.619 45.455 20.58 0.00 35.18 2.43
473 476 1.997040 TGTGGTTGCCTATAGGGGTTT 59.003 47.619 20.58 0.00 35.18 3.27
474 477 1.676248 TGTGGTTGCCTATAGGGGTT 58.324 50.000 20.58 0.00 35.18 4.11
475 478 1.907240 ATGTGGTTGCCTATAGGGGT 58.093 50.000 20.58 0.00 35.18 4.95
476 479 4.657814 ATTATGTGGTTGCCTATAGGGG 57.342 45.455 20.58 0.00 35.18 4.79
477 480 6.173339 CACTATTATGTGGTTGCCTATAGGG 58.827 44.000 20.58 2.51 34.56 3.53
490 493 0.531974 ACCCGCGCCACTATTATGTG 60.532 55.000 0.00 0.00 37.66 3.21
491 494 0.179468 AACCCGCGCCACTATTATGT 59.821 50.000 0.00 0.00 0.00 2.29
492 495 1.796459 GTAACCCGCGCCACTATTATG 59.204 52.381 0.00 0.00 0.00 1.90
493 496 1.690352 AGTAACCCGCGCCACTATTAT 59.310 47.619 0.00 0.00 0.00 1.28
494 497 1.113788 AGTAACCCGCGCCACTATTA 58.886 50.000 0.00 0.00 0.00 0.98
495 498 1.068127 CTAGTAACCCGCGCCACTATT 59.932 52.381 0.00 0.00 0.00 1.73
496 499 0.672342 CTAGTAACCCGCGCCACTAT 59.328 55.000 0.00 0.00 0.00 2.12
497 500 1.386525 CCTAGTAACCCGCGCCACTA 61.387 60.000 0.00 3.94 0.00 2.74
498 501 2.718073 CCTAGTAACCCGCGCCACT 61.718 63.158 0.00 2.82 0.00 4.00
499 502 2.202837 CCTAGTAACCCGCGCCAC 60.203 66.667 0.00 0.00 0.00 5.01
500 503 3.463585 CCCTAGTAACCCGCGCCA 61.464 66.667 0.00 0.00 0.00 5.69
501 504 4.904900 GCCCTAGTAACCCGCGCC 62.905 72.222 0.00 0.00 0.00 6.53
502 505 4.904900 GGCCCTAGTAACCCGCGC 62.905 72.222 0.00 0.00 0.00 6.86
503 506 4.580551 CGGCCCTAGTAACCCGCG 62.581 72.222 0.00 0.00 33.77 6.46
504 507 3.464494 ACGGCCCTAGTAACCCGC 61.464 66.667 0.00 0.00 44.29 6.13
505 508 2.497770 CACGGCCCTAGTAACCCG 59.502 66.667 0.00 0.00 45.80 5.28
506 509 1.044790 TAGCACGGCCCTAGTAACCC 61.045 60.000 0.00 0.00 0.00 4.11
507 510 0.103755 GTAGCACGGCCCTAGTAACC 59.896 60.000 0.00 0.00 0.00 2.85
508 511 1.109609 AGTAGCACGGCCCTAGTAAC 58.890 55.000 0.00 0.00 0.00 2.50
509 512 1.108776 CAGTAGCACGGCCCTAGTAA 58.891 55.000 0.00 0.00 0.00 2.24
510 513 1.389609 GCAGTAGCACGGCCCTAGTA 61.390 60.000 0.00 0.00 41.58 1.82
511 514 2.722201 GCAGTAGCACGGCCCTAGT 61.722 63.158 0.00 0.00 41.58 2.57
512 515 1.107538 TAGCAGTAGCACGGCCCTAG 61.108 60.000 0.00 0.00 45.49 3.02
513 516 1.076559 TAGCAGTAGCACGGCCCTA 60.077 57.895 0.00 0.00 45.49 3.53
514 517 2.363795 TAGCAGTAGCACGGCCCT 60.364 61.111 0.00 0.00 45.49 5.19
515 518 2.202892 GTAGCAGTAGCACGGCCC 60.203 66.667 0.00 0.00 45.49 5.80
516 519 1.389609 TAGGTAGCAGTAGCACGGCC 61.390 60.000 0.00 0.00 45.49 6.13
517 520 0.458669 TTAGGTAGCAGTAGCACGGC 59.541 55.000 0.00 3.90 45.49 5.68
518 521 3.568853 ACTATTAGGTAGCAGTAGCACGG 59.431 47.826 0.00 0.00 45.49 4.94
519 522 4.832590 ACTATTAGGTAGCAGTAGCACG 57.167 45.455 0.00 0.00 45.49 5.34
529 532 4.238761 TGCTTGCGCTACTATTAGGTAG 57.761 45.455 9.73 0.00 41.31 3.18
530 533 4.659111 TTGCTTGCGCTACTATTAGGTA 57.341 40.909 9.73 0.00 36.97 3.08
531 534 3.536956 TTGCTTGCGCTACTATTAGGT 57.463 42.857 9.73 0.00 36.97 3.08
532 535 3.621268 TGTTTGCTTGCGCTACTATTAGG 59.379 43.478 9.73 0.00 36.97 2.69
533 536 4.857871 TGTTTGCTTGCGCTACTATTAG 57.142 40.909 9.73 0.00 36.97 1.73
534 537 5.614923 TTTGTTTGCTTGCGCTACTATTA 57.385 34.783 9.73 0.00 36.97 0.98
535 538 4.497473 TTTGTTTGCTTGCGCTACTATT 57.503 36.364 9.73 0.00 36.97 1.73
536 539 4.497473 TTTTGTTTGCTTGCGCTACTAT 57.503 36.364 9.73 0.00 36.97 2.12
537 540 3.972950 TTTTGTTTGCTTGCGCTACTA 57.027 38.095 9.73 0.00 36.97 1.82
538 541 2.861462 TTTTGTTTGCTTGCGCTACT 57.139 40.000 9.73 0.00 36.97 2.57
539 542 2.155539 CCATTTTGTTTGCTTGCGCTAC 59.844 45.455 9.73 0.00 36.97 3.58
540 543 2.402305 CCATTTTGTTTGCTTGCGCTA 58.598 42.857 9.73 0.00 36.97 4.26
541 544 1.219646 CCATTTTGTTTGCTTGCGCT 58.780 45.000 9.73 0.00 36.97 5.92
542 545 0.235404 CCCATTTTGTTTGCTTGCGC 59.765 50.000 0.00 0.00 0.00 6.09
543 546 0.235404 GCCCATTTTGTTTGCTTGCG 59.765 50.000 0.00 0.00 0.00 4.85
544 547 1.596603 AGCCCATTTTGTTTGCTTGC 58.403 45.000 0.00 0.00 0.00 4.01
545 548 3.066380 GGTAGCCCATTTTGTTTGCTTG 58.934 45.455 0.00 0.00 33.63 4.01
546 549 2.288763 CGGTAGCCCATTTTGTTTGCTT 60.289 45.455 0.00 0.00 33.63 3.91
547 550 1.272212 CGGTAGCCCATTTTGTTTGCT 59.728 47.619 0.00 0.00 36.11 3.91
548 551 1.271102 TCGGTAGCCCATTTTGTTTGC 59.729 47.619 0.00 0.00 0.00 3.68
549 552 3.866883 ATCGGTAGCCCATTTTGTTTG 57.133 42.857 0.00 0.00 0.00 2.93
550 553 4.202111 GCATATCGGTAGCCCATTTTGTTT 60.202 41.667 0.00 0.00 0.00 2.83
551 554 3.317993 GCATATCGGTAGCCCATTTTGTT 59.682 43.478 0.00 0.00 0.00 2.83
552 555 2.884639 GCATATCGGTAGCCCATTTTGT 59.115 45.455 0.00 0.00 0.00 2.83
553 556 3.149196 AGCATATCGGTAGCCCATTTTG 58.851 45.455 0.00 0.00 0.00 2.44
554 557 3.508845 AGCATATCGGTAGCCCATTTT 57.491 42.857 0.00 0.00 0.00 1.82
555 558 3.508845 AAGCATATCGGTAGCCCATTT 57.491 42.857 0.00 0.00 0.00 2.32
556 559 3.508845 AAAGCATATCGGTAGCCCATT 57.491 42.857 0.00 0.00 0.00 3.16
557 560 3.583086 ACTAAAGCATATCGGTAGCCCAT 59.417 43.478 0.00 0.00 0.00 4.00
558 561 2.969950 ACTAAAGCATATCGGTAGCCCA 59.030 45.455 0.00 0.00 0.00 5.36
559 562 3.679824 ACTAAAGCATATCGGTAGCCC 57.320 47.619 0.00 0.00 0.00 5.19
573 576 1.067142 TCTGTGCCCGTGCTACTAAAG 60.067 52.381 0.00 0.00 38.71 1.85
574 577 0.970640 TCTGTGCCCGTGCTACTAAA 59.029 50.000 0.00 0.00 38.71 1.85
575 578 0.970640 TTCTGTGCCCGTGCTACTAA 59.029 50.000 0.00 0.00 38.71 2.24
576 579 0.970640 TTTCTGTGCCCGTGCTACTA 59.029 50.000 0.00 0.00 38.71 1.82
577 580 0.320771 CTTTCTGTGCCCGTGCTACT 60.321 55.000 0.00 0.00 38.71 2.57
578 581 1.912371 GCTTTCTGTGCCCGTGCTAC 61.912 60.000 0.00 0.00 38.71 3.58
579 582 1.671054 GCTTTCTGTGCCCGTGCTA 60.671 57.895 0.00 0.00 38.71 3.49
580 583 2.980233 GCTTTCTGTGCCCGTGCT 60.980 61.111 0.00 0.00 38.71 4.40
581 584 4.043200 GGCTTTCTGTGCCCGTGC 62.043 66.667 0.00 0.00 44.32 5.34
596 599 0.594284 CACTTAGTAGTAGCGCGGGC 60.594 60.000 17.92 17.92 33.48 6.13
597 600 0.030369 CCACTTAGTAGTAGCGCGGG 59.970 60.000 8.83 0.00 31.96 6.13
598 601 0.737219 ACCACTTAGTAGTAGCGCGG 59.263 55.000 8.83 0.00 31.96 6.46
599 602 1.268437 GGACCACTTAGTAGTAGCGCG 60.268 57.143 0.00 0.00 31.96 6.86
600 603 1.066757 GGGACCACTTAGTAGTAGCGC 59.933 57.143 0.00 0.00 31.96 5.92
616 619 0.748005 CGTTGGGACATGATGGGGAC 60.748 60.000 0.00 0.00 39.30 4.46
617 620 0.912006 TCGTTGGGACATGATGGGGA 60.912 55.000 0.00 0.00 39.30 4.81
618 621 0.034574 TTCGTTGGGACATGATGGGG 60.035 55.000 0.00 0.00 39.30 4.96
619 622 1.677576 CATTCGTTGGGACATGATGGG 59.322 52.381 0.00 0.00 39.30 4.00
620 623 1.677576 CCATTCGTTGGGACATGATGG 59.322 52.381 0.00 0.00 42.33 3.51
630 633 2.332063 ATCTAGTGCCCATTCGTTGG 57.668 50.000 0.82 0.82 46.00 3.77
631 634 3.270027 TCAATCTAGTGCCCATTCGTTG 58.730 45.455 0.00 0.00 0.00 4.10
632 635 3.197766 TCTCAATCTAGTGCCCATTCGTT 59.802 43.478 0.00 0.00 0.00 3.85
633 636 2.766263 TCTCAATCTAGTGCCCATTCGT 59.234 45.455 0.00 0.00 0.00 3.85
634 637 3.181471 ACTCTCAATCTAGTGCCCATTCG 60.181 47.826 0.00 0.00 0.00 3.34
635 638 4.125703 CACTCTCAATCTAGTGCCCATTC 58.874 47.826 0.00 0.00 36.96 2.67
636 639 4.148128 CACTCTCAATCTAGTGCCCATT 57.852 45.455 0.00 0.00 36.96 3.16
637 640 3.834489 CACTCTCAATCTAGTGCCCAT 57.166 47.619 0.00 0.00 36.96 4.00
642 645 6.442952 GGTAGTATGCACTCTCAATCTAGTG 58.557 44.000 0.00 0.00 44.79 2.74
643 646 5.536916 GGGTAGTATGCACTCTCAATCTAGT 59.463 44.000 0.00 0.00 36.14 2.57
644 647 5.335269 CGGGTAGTATGCACTCTCAATCTAG 60.335 48.000 0.00 0.00 36.14 2.43
645 648 4.519350 CGGGTAGTATGCACTCTCAATCTA 59.481 45.833 0.00 0.00 36.14 1.98
646 649 3.319405 CGGGTAGTATGCACTCTCAATCT 59.681 47.826 0.00 0.00 36.14 2.40
647 650 3.318275 TCGGGTAGTATGCACTCTCAATC 59.682 47.826 0.00 0.00 36.14 2.67
648 651 3.296854 TCGGGTAGTATGCACTCTCAAT 58.703 45.455 0.00 0.00 36.14 2.57
649 652 2.730382 TCGGGTAGTATGCACTCTCAA 58.270 47.619 0.00 0.00 36.14 3.02
650 653 2.430248 TCGGGTAGTATGCACTCTCA 57.570 50.000 0.00 0.00 36.14 3.27
651 654 4.202121 TGAATTCGGGTAGTATGCACTCTC 60.202 45.833 0.04 0.00 36.14 3.20
652 655 3.704566 TGAATTCGGGTAGTATGCACTCT 59.295 43.478 0.04 0.00 36.14 3.24
653 656 4.054780 TGAATTCGGGTAGTATGCACTC 57.945 45.455 0.04 0.00 36.14 3.51
654 657 4.481368 TTGAATTCGGGTAGTATGCACT 57.519 40.909 0.04 0.00 38.91 4.40
655 658 5.554822 TTTTGAATTCGGGTAGTATGCAC 57.445 39.130 0.04 0.00 0.00 4.57
680 683 4.424842 TCAGGCCAAATACTCCCATTTTT 58.575 39.130 5.01 0.00 0.00 1.94
681 684 4.059773 TCAGGCCAAATACTCCCATTTT 57.940 40.909 5.01 0.00 0.00 1.82
682 685 3.756082 TCAGGCCAAATACTCCCATTT 57.244 42.857 5.01 0.00 0.00 2.32
683 686 3.011708 AGTTCAGGCCAAATACTCCCATT 59.988 43.478 5.01 0.00 0.00 3.16
684 687 2.582636 AGTTCAGGCCAAATACTCCCAT 59.417 45.455 5.01 0.00 0.00 4.00
685 688 1.992557 AGTTCAGGCCAAATACTCCCA 59.007 47.619 5.01 0.00 0.00 4.37
686 689 2.026262 TGAGTTCAGGCCAAATACTCCC 60.026 50.000 18.65 3.29 35.51 4.30
687 690 3.010420 GTGAGTTCAGGCCAAATACTCC 58.990 50.000 18.65 10.34 35.51 3.85
688 691 3.686726 CAGTGAGTTCAGGCCAAATACTC 59.313 47.826 5.01 12.54 36.61 2.59
689 692 3.073062 ACAGTGAGTTCAGGCCAAATACT 59.927 43.478 5.01 2.02 0.00 2.12
690 693 3.412386 ACAGTGAGTTCAGGCCAAATAC 58.588 45.455 5.01 0.00 0.00 1.89
758 761 2.107204 ACCCGGACTAGTATACCATCGT 59.893 50.000 0.73 0.00 0.00 3.73
760 763 5.171339 TCTACCCGGACTAGTATACCATC 57.829 47.826 0.73 0.00 0.00 3.51
769 772 8.189460 GCTGTAAATATATTCTACCCGGACTAG 58.811 40.741 0.73 0.71 0.00 2.57
770 773 7.148188 CGCTGTAAATATATTCTACCCGGACTA 60.148 40.741 0.73 0.00 0.00 2.59
771 774 6.349944 CGCTGTAAATATATTCTACCCGGACT 60.350 42.308 0.73 0.00 0.00 3.85
772 775 5.803967 CGCTGTAAATATATTCTACCCGGAC 59.196 44.000 0.73 0.00 0.00 4.79
775 778 8.746922 TTAACGCTGTAAATATATTCTACCCG 57.253 34.615 0.00 10.52 0.00 5.28
785 788 9.769093 GACTTCAAACATTAACGCTGTAAATAT 57.231 29.630 0.00 0.00 0.00 1.28
786 789 8.231837 GGACTTCAAACATTAACGCTGTAAATA 58.768 33.333 0.00 0.00 0.00 1.40
787 790 7.081976 GGACTTCAAACATTAACGCTGTAAAT 58.918 34.615 0.00 0.00 0.00 1.40
788 791 6.432107 GGACTTCAAACATTAACGCTGTAAA 58.568 36.000 0.00 0.00 0.00 2.01
789 792 5.333492 CGGACTTCAAACATTAACGCTGTAA 60.333 40.000 0.00 0.00 0.00 2.41
790 793 4.150980 CGGACTTCAAACATTAACGCTGTA 59.849 41.667 0.00 0.00 0.00 2.74
791 794 3.059188 CGGACTTCAAACATTAACGCTGT 60.059 43.478 0.00 0.00 0.00 4.40
792 795 3.479006 CGGACTTCAAACATTAACGCTG 58.521 45.455 0.00 0.00 0.00 5.18
793 796 2.482721 CCGGACTTCAAACATTAACGCT 59.517 45.455 0.00 0.00 0.00 5.07
794 797 2.846693 CCGGACTTCAAACATTAACGC 58.153 47.619 0.00 0.00 0.00 4.84
795 798 2.482721 AGCCGGACTTCAAACATTAACG 59.517 45.455 5.05 0.00 0.00 3.18
796 799 4.226761 CAAGCCGGACTTCAAACATTAAC 58.773 43.478 5.05 0.00 36.04 2.01
797 800 3.254657 CCAAGCCGGACTTCAAACATTAA 59.745 43.478 5.05 0.00 36.04 1.40
798 801 2.817258 CCAAGCCGGACTTCAAACATTA 59.183 45.455 5.05 0.00 36.04 1.90
799 802 1.613437 CCAAGCCGGACTTCAAACATT 59.387 47.619 5.05 0.00 36.04 2.71
800 803 1.247567 CCAAGCCGGACTTCAAACAT 58.752 50.000 5.05 0.00 36.04 2.71
801 804 1.452145 GCCAAGCCGGACTTCAAACA 61.452 55.000 5.05 0.00 36.04 2.83
802 805 1.285950 GCCAAGCCGGACTTCAAAC 59.714 57.895 5.05 0.00 36.04 2.93
803 806 2.258013 CGCCAAGCCGGACTTCAAA 61.258 57.895 5.05 0.00 36.04 2.69
804 807 2.102109 TACGCCAAGCCGGACTTCAA 62.102 55.000 5.05 0.00 36.04 2.69
805 808 2.102109 TTACGCCAAGCCGGACTTCA 62.102 55.000 5.05 0.00 36.04 3.02
806 809 0.952010 TTTACGCCAAGCCGGACTTC 60.952 55.000 5.05 0.00 36.04 3.01
807 810 0.535553 TTTTACGCCAAGCCGGACTT 60.536 50.000 5.05 5.30 40.05 3.01
808 811 0.535553 TTTTTACGCCAAGCCGGACT 60.536 50.000 5.05 0.00 36.56 3.85
809 812 1.950758 TTTTTACGCCAAGCCGGAC 59.049 52.632 5.05 0.00 36.56 4.79
810 813 4.477413 TTTTTACGCCAAGCCGGA 57.523 50.000 5.05 0.00 36.56 5.14
827 830 2.370849 TCCTAGCCGGACTCAACTTTTT 59.629 45.455 5.05 0.00 36.69 1.94
828 831 1.975680 TCCTAGCCGGACTCAACTTTT 59.024 47.619 5.05 0.00 36.69 2.27
829 832 1.550976 CTCCTAGCCGGACTCAACTTT 59.449 52.381 5.05 0.00 36.69 2.66
830 833 1.187087 CTCCTAGCCGGACTCAACTT 58.813 55.000 5.05 0.00 36.69 2.66
831 834 0.039911 ACTCCTAGCCGGACTCAACT 59.960 55.000 5.05 0.00 36.69 3.16
848 851 1.447317 CGGACACAGGCAAGCAAACT 61.447 55.000 0.00 0.00 0.00 2.66
903 908 3.998672 GGCCGACCTGACCGAACA 61.999 66.667 0.00 0.00 0.00 3.18
1087 1096 2.094752 CGTCAATGTTGATTTGGGGACC 60.095 50.000 0.00 0.00 44.92 4.46
1392 1401 1.501654 GGAAGAAGCCAAGGAGGGGT 61.502 60.000 0.00 0.00 41.27 4.95
1427 1439 3.541831 CGGGCGTGAACGTGATCG 61.542 66.667 4.59 0.00 42.22 3.69
1504 1519 1.876156 GGAATCAATCAGGATGCGGTC 59.124 52.381 0.00 0.00 34.76 4.79
1549 1564 2.157738 GACCTCTTCATGCTGCAAGTT 58.842 47.619 6.36 0.00 35.30 2.66
1621 1636 1.779569 AAGAAGCGTCCGTTGTACTG 58.220 50.000 0.00 0.00 0.00 2.74
1823 1838 3.900941 GTGCTACAACAAGGACCAAATG 58.099 45.455 0.00 0.00 32.12 2.32
1960 1975 9.726232 AATGATATGAAAGTTGTCGAAATCATG 57.274 29.630 0.52 0.00 0.00 3.07
2483 2579 6.430925 AGGCAAGAAAGGGAATTTATTTTTGC 59.569 34.615 0.00 0.00 29.95 3.68
2557 2682 4.109050 ACTATGCCAAAACAACAAACACG 58.891 39.130 0.00 0.00 0.00 4.49
2602 2727 5.585390 ACATTTCCTCATGCGAATTCAATC 58.415 37.500 6.22 0.00 0.00 2.67
2700 2828 1.665735 CCACGTTTGTTGTAGCATGCC 60.666 52.381 15.66 0.00 0.00 4.40
2745 2873 6.394025 AGACGAATGGATAAGTTAGTCTCC 57.606 41.667 0.00 0.00 36.11 3.71
2752 2880 8.919145 AGATAAGAGAAGACGAATGGATAAGTT 58.081 33.333 0.00 0.00 0.00 2.66
2885 3015 7.433680 AGAACTCCAACAATTAACAACAATCC 58.566 34.615 0.00 0.00 0.00 3.01
2902 3032 5.480422 TGTGTCTAGAAGCATAAGAACTCCA 59.520 40.000 0.00 0.00 0.00 3.86
2922 3052 0.106268 TCCACTGGCAATGGTTGTGT 60.106 50.000 15.49 0.00 38.47 3.72
2993 3196 8.669243 CAAGATCTTACCACTTGAACTATTTCC 58.331 37.037 7.86 0.00 42.12 3.13
3041 3254 9.739276 TTATCCAAAGTCAAGATCAAACAGTAT 57.261 29.630 0.00 0.00 0.00 2.12
3072 3285 3.054139 ACCCATATATACTGGCAGCCATG 60.054 47.826 16.64 11.88 30.82 3.66
3083 3296 8.521170 TGAGAGTGCATACTACCCATATATAC 57.479 38.462 0.00 0.00 37.25 1.47
3130 3343 1.514087 CATGTGCAGTGCAATCCCC 59.486 57.895 21.67 7.61 41.47 4.81
3211 3425 7.129457 AGGTCTGCAGAATTCACTTATGATA 57.871 36.000 20.19 0.00 33.85 2.15
3226 3440 1.462283 CAACATGTCGAAGGTCTGCAG 59.538 52.381 7.63 7.63 0.00 4.41
3233 3447 3.595173 TGGACATACAACATGTCGAAGG 58.405 45.455 0.00 0.00 46.85 3.46
3238 3452 6.480320 GGAGAACTATGGACATACAACATGTC 59.520 42.308 0.00 8.54 45.59 3.06
3251 3465 5.886609 TCCAAAACAATGGAGAACTATGGA 58.113 37.500 0.00 0.00 44.52 3.41
3289 3503 9.364989 TCAACCTTTTACATTTCTTTGAACTTG 57.635 29.630 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.