Multiple sequence alignment - TraesCS3A01G017600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G017600 chr3A 100.000 3005 0 0 1 3005 11126030 11129034 0.000000e+00 5550.0
1 TraesCS3A01G017600 chr3A 100.000 3005 0 0 1 3005 11134681 11137685 0.000000e+00 5550.0
2 TraesCS3A01G017600 chr3A 100.000 2153 0 0 1 2153 11141553 11143705 0.000000e+00 3976.0
3 TraesCS3A01G017600 chr3A 81.421 1717 267 29 729 2415 10940540 10942234 0.000000e+00 1356.0
4 TraesCS3A01G017600 chr3A 86.777 242 26 6 2 241 10940015 10940252 6.390000e-67 265.0
5 TraesCS3A01G017600 chrUn 100.000 2153 0 0 1 2153 299357663 299359815 0.000000e+00 3976.0
6 TraesCS3A01G017600 chrUn 87.695 2056 196 29 398 2410 208776572 208774531 0.000000e+00 2342.0
7 TraesCS3A01G017600 chrUn 85.443 2267 231 37 374 2601 257137336 257135130 0.000000e+00 2266.0
8 TraesCS3A01G017600 chrUn 85.443 2267 231 37 374 2601 279876663 279878869 0.000000e+00 2266.0
9 TraesCS3A01G017600 chrUn 84.236 2049 218 56 84 2077 309800866 309802864 0.000000e+00 1897.0
10 TraesCS3A01G017600 chrUn 84.236 2049 218 56 84 2077 315209613 315211611 0.000000e+00 1897.0
11 TraesCS3A01G017600 chrUn 84.848 1716 207 31 583 2259 225561804 225560103 0.000000e+00 1679.0
12 TraesCS3A01G017600 chrUn 84.457 1705 215 33 583 2259 32290517 32288835 0.000000e+00 1635.0
13 TraesCS3A01G017600 chrUn 84.207 1317 161 26 1119 2416 285727861 285726573 0.000000e+00 1236.0
14 TraesCS3A01G017600 chrUn 78.708 836 135 20 417 1233 257142240 257141429 4.440000e-143 518.0
15 TraesCS3A01G017600 chrUn 92.364 275 21 0 2731 3005 240816144 240816418 2.810000e-105 392.0
16 TraesCS3A01G017600 chrUn 79.787 376 60 11 2569 2931 314990519 314990147 2.970000e-65 259.0
17 TraesCS3A01G017600 chrUn 96.078 102 4 0 2592 2693 240816043 240816144 1.850000e-37 167.0
18 TraesCS3A01G017600 chr3D 82.906 1796 241 43 309 2065 4994973 4996741 0.000000e+00 1555.0
19 TraesCS3A01G017600 chr3D 87.917 240 26 1 1 237 4993973 4994212 2.280000e-71 279.0
20 TraesCS3A01G017600 chr3D 85.714 210 23 7 2801 3005 9677653 9677446 6.520000e-52 215.0
21 TraesCS3A01G017600 chr3D 97.619 42 1 0 268 309 4994389 4994430 4.160000e-09 73.1
22 TraesCS3A01G017600 chr3D 97.561 41 1 0 2650 2690 9677695 9677655 1.490000e-08 71.3
23 TraesCS3A01G017600 chr3B 79.633 1581 264 41 675 2230 13971933 13970386 0.000000e+00 1083.0
24 TraesCS3A01G017600 chr3B 81.063 903 133 22 407 1290 13822070 13821187 0.000000e+00 686.0
25 TraesCS3A01G017600 chr3B 80.784 255 41 6 2631 2879 46307799 46308051 3.060000e-45 193.0
26 TraesCS3A01G017600 chr3B 89.362 47 0 3 268 309 13822208 13822162 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G017600 chr3A 11126030 11129034 3004 False 5550.00 5550 100.000000 1 3005 1 chr3A.!!$F1 3004
1 TraesCS3A01G017600 chr3A 11134681 11143705 9024 False 4763.00 5550 100.000000 1 3005 2 chr3A.!!$F3 3004
2 TraesCS3A01G017600 chr3A 10940015 10942234 2219 False 810.50 1356 84.099000 2 2415 2 chr3A.!!$F2 2413
3 TraesCS3A01G017600 chrUn 299357663 299359815 2152 False 3976.00 3976 100.000000 1 2153 1 chrUn.!!$F2 2152
4 TraesCS3A01G017600 chrUn 208774531 208776572 2041 True 2342.00 2342 87.695000 398 2410 1 chrUn.!!$R2 2012
5 TraesCS3A01G017600 chrUn 257135130 257137336 2206 True 2266.00 2266 85.443000 374 2601 1 chrUn.!!$R4 2227
6 TraesCS3A01G017600 chrUn 279876663 279878869 2206 False 2266.00 2266 85.443000 374 2601 1 chrUn.!!$F1 2227
7 TraesCS3A01G017600 chrUn 309800866 309802864 1998 False 1897.00 1897 84.236000 84 2077 1 chrUn.!!$F3 1993
8 TraesCS3A01G017600 chrUn 315209613 315211611 1998 False 1897.00 1897 84.236000 84 2077 1 chrUn.!!$F4 1993
9 TraesCS3A01G017600 chrUn 225560103 225561804 1701 True 1679.00 1679 84.848000 583 2259 1 chrUn.!!$R3 1676
10 TraesCS3A01G017600 chrUn 32288835 32290517 1682 True 1635.00 1635 84.457000 583 2259 1 chrUn.!!$R1 1676
11 TraesCS3A01G017600 chrUn 285726573 285727861 1288 True 1236.00 1236 84.207000 1119 2416 1 chrUn.!!$R6 1297
12 TraesCS3A01G017600 chrUn 257141429 257142240 811 True 518.00 518 78.708000 417 1233 1 chrUn.!!$R5 816
13 TraesCS3A01G017600 chr3D 4993973 4996741 2768 False 635.70 1555 89.480667 1 2065 3 chr3D.!!$F1 2064
14 TraesCS3A01G017600 chr3B 13970386 13971933 1547 True 1083.00 1083 79.633000 675 2230 1 chr3B.!!$R1 1555
15 TraesCS3A01G017600 chr3B 13821187 13822208 1021 True 370.35 686 85.212500 268 1290 2 chr3B.!!$R2 1022

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 9885 6.012658 TGGTTAACTCATTCAGCATGTTTC 57.987 37.5 5.42 0.0 37.4 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2973 10740 8.337532 GGCTGATGTTTGAAATAATAAAATGGC 58.662 33.333 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2155 9885 6.012658 TGGTTAACTCATTCAGCATGTTTC 57.987 37.500 5.42 0.00 37.40 2.78
2226 9957 8.451748 GCTATTTTTCTGAACTCCGTAAAAGAT 58.548 33.333 0.00 0.00 0.00 2.40
2249 9981 8.207545 AGATCTTCTGTTGAAACTGTAACTTCT 58.792 33.333 0.00 0.00 0.00 2.85
2250 9982 8.738645 ATCTTCTGTTGAAACTGTAACTTCTT 57.261 30.769 0.00 0.00 0.00 2.52
2305 10049 3.497332 TGTCCTGCAAGTGACTAGTACT 58.503 45.455 0.00 0.00 35.84 2.73
2345 10092 6.335471 TCCACGTTTGTTATCTCTAGTCAA 57.665 37.500 0.00 0.00 0.00 3.18
2426 10189 9.787532 TTATTTTATTTTCTTCTTCGCATGAGG 57.212 29.630 0.00 0.00 0.00 3.86
2427 10190 5.818136 TTATTTTCTTCTTCGCATGAGGG 57.182 39.130 0.00 0.00 0.00 4.30
2428 10191 1.453155 TTTCTTCTTCGCATGAGGGC 58.547 50.000 0.00 0.00 0.00 5.19
2429 10192 0.615331 TTCTTCTTCGCATGAGGGCT 59.385 50.000 0.00 0.00 0.00 5.19
2430 10193 0.107993 TCTTCTTCGCATGAGGGCTG 60.108 55.000 0.00 0.00 0.00 4.85
2431 10194 0.107993 CTTCTTCGCATGAGGGCTGA 60.108 55.000 0.00 0.00 0.00 4.26
2432 10195 0.107993 TTCTTCGCATGAGGGCTGAG 60.108 55.000 0.00 0.00 0.00 3.35
2433 10196 1.220206 CTTCGCATGAGGGCTGAGT 59.780 57.895 0.00 0.00 0.00 3.41
2434 10197 0.392193 CTTCGCATGAGGGCTGAGTT 60.392 55.000 0.00 0.00 0.00 3.01
2435 10198 0.901827 TTCGCATGAGGGCTGAGTTA 59.098 50.000 0.00 0.00 0.00 2.24
2436 10199 1.123077 TCGCATGAGGGCTGAGTTAT 58.877 50.000 0.00 0.00 0.00 1.89
2470 10233 9.627123 CCTTTCCTGATTTCATGTTATAACCTA 57.373 33.333 13.01 0.00 0.00 3.08
2530 10294 6.090129 GGTGCTTTAGAAAATATTCGTTGCA 58.910 36.000 0.00 0.00 40.63 4.08
2571 10338 8.635765 TCTTTATCTATTGCCAAAAGTGAGTT 57.364 30.769 0.00 0.00 0.00 3.01
2626 10393 8.589335 TGTAATAGACTCACTGTTGTTTTCTC 57.411 34.615 0.00 0.00 32.46 2.87
2627 10394 8.201464 TGTAATAGACTCACTGTTGTTTTCTCA 58.799 33.333 0.00 0.00 32.46 3.27
2628 10395 9.209175 GTAATAGACTCACTGTTGTTTTCTCAT 57.791 33.333 0.00 0.00 32.46 2.90
2630 10397 8.764524 ATAGACTCACTGTTGTTTTCTCATAC 57.235 34.615 0.00 0.00 0.00 2.39
2631 10398 6.821388 AGACTCACTGTTGTTTTCTCATACT 58.179 36.000 0.00 0.00 0.00 2.12
2632 10399 7.275920 AGACTCACTGTTGTTTTCTCATACTT 58.724 34.615 0.00 0.00 0.00 2.24
2633 10400 7.225538 AGACTCACTGTTGTTTTCTCATACTTG 59.774 37.037 0.00 0.00 0.00 3.16
2634 10401 6.823689 ACTCACTGTTGTTTTCTCATACTTGT 59.176 34.615 0.00 0.00 0.00 3.16
2635 10402 7.015226 TCACTGTTGTTTTCTCATACTTGTG 57.985 36.000 0.00 0.00 0.00 3.33
2636 10403 5.682862 CACTGTTGTTTTCTCATACTTGTGC 59.317 40.000 0.00 0.00 0.00 4.57
2637 10404 5.590259 ACTGTTGTTTTCTCATACTTGTGCT 59.410 36.000 0.00 0.00 0.00 4.40
2638 10405 6.095440 ACTGTTGTTTTCTCATACTTGTGCTT 59.905 34.615 0.00 0.00 0.00 3.91
2639 10406 7.282224 ACTGTTGTTTTCTCATACTTGTGCTTA 59.718 33.333 0.00 0.00 0.00 3.09
2640 10407 8.165239 TGTTGTTTTCTCATACTTGTGCTTAT 57.835 30.769 0.00 0.00 0.00 1.73
2641 10408 9.278978 TGTTGTTTTCTCATACTTGTGCTTATA 57.721 29.630 0.00 0.00 0.00 0.98
2651 10418 9.674068 TCATACTTGTGCTTATAAATACAACCA 57.326 29.630 9.10 3.18 0.00 3.67
2655 10422 7.759433 ACTTGTGCTTATAAATACAACCATTGC 59.241 33.333 9.10 0.00 0.00 3.56
2656 10423 7.403312 TGTGCTTATAAATACAACCATTGCT 57.597 32.000 0.35 0.00 0.00 3.91
2657 10424 7.479980 TGTGCTTATAAATACAACCATTGCTC 58.520 34.615 0.35 0.00 0.00 4.26
2658 10425 6.632834 GTGCTTATAAATACAACCATTGCTCG 59.367 38.462 0.00 0.00 0.00 5.03
2659 10426 6.317642 TGCTTATAAATACAACCATTGCTCGT 59.682 34.615 0.00 0.00 0.00 4.18
2660 10427 6.632834 GCTTATAAATACAACCATTGCTCGTG 59.367 38.462 0.00 0.00 0.00 4.35
2661 10428 3.848272 AAATACAACCATTGCTCGTGG 57.152 42.857 1.76 1.76 42.55 4.94
2662 10429 2.779755 ATACAACCATTGCTCGTGGA 57.220 45.000 9.14 0.00 39.12 4.02
2663 10430 2.779755 TACAACCATTGCTCGTGGAT 57.220 45.000 9.14 0.00 39.12 3.41
2664 10431 1.167851 ACAACCATTGCTCGTGGATG 58.832 50.000 9.14 9.57 43.04 3.51
2665 10432 1.167851 CAACCATTGCTCGTGGATGT 58.832 50.000 9.14 0.00 39.12 3.06
2666 10433 1.135603 CAACCATTGCTCGTGGATGTG 60.136 52.381 9.14 2.09 39.12 3.21
2667 10434 0.324614 ACCATTGCTCGTGGATGTGA 59.675 50.000 9.14 0.00 39.12 3.58
2668 10435 1.065199 ACCATTGCTCGTGGATGTGAT 60.065 47.619 9.14 0.00 39.12 3.06
2669 10436 1.332686 CCATTGCTCGTGGATGTGATG 59.667 52.381 0.00 0.00 39.12 3.07
2670 10437 1.332686 CATTGCTCGTGGATGTGATGG 59.667 52.381 0.00 0.00 0.00 3.51
2671 10438 0.612744 TTGCTCGTGGATGTGATGGA 59.387 50.000 0.00 0.00 0.00 3.41
2672 10439 0.176449 TGCTCGTGGATGTGATGGAG 59.824 55.000 0.00 0.00 0.00 3.86
2673 10440 1.156645 GCTCGTGGATGTGATGGAGC 61.157 60.000 0.00 0.00 39.91 4.70
2674 10441 0.463204 CTCGTGGATGTGATGGAGCT 59.537 55.000 0.00 0.00 0.00 4.09
2675 10442 0.176449 TCGTGGATGTGATGGAGCTG 59.824 55.000 0.00 0.00 0.00 4.24
2676 10443 0.176449 CGTGGATGTGATGGAGCTGA 59.824 55.000 0.00 0.00 0.00 4.26
2677 10444 1.405933 CGTGGATGTGATGGAGCTGAA 60.406 52.381 0.00 0.00 0.00 3.02
2678 10445 2.715046 GTGGATGTGATGGAGCTGAAA 58.285 47.619 0.00 0.00 0.00 2.69
2679 10446 3.285484 GTGGATGTGATGGAGCTGAAAT 58.715 45.455 0.00 0.00 0.00 2.17
2680 10447 3.066342 GTGGATGTGATGGAGCTGAAATG 59.934 47.826 0.00 0.00 0.00 2.32
2681 10448 3.285484 GGATGTGATGGAGCTGAAATGT 58.715 45.455 0.00 0.00 0.00 2.71
2682 10449 3.698040 GGATGTGATGGAGCTGAAATGTT 59.302 43.478 0.00 0.00 0.00 2.71
2683 10450 4.439700 GGATGTGATGGAGCTGAAATGTTG 60.440 45.833 0.00 0.00 0.00 3.33
2684 10451 2.229543 TGTGATGGAGCTGAAATGTTGC 59.770 45.455 0.00 0.00 0.00 4.17
2685 10452 2.229543 GTGATGGAGCTGAAATGTTGCA 59.770 45.455 0.00 0.00 0.00 4.08
2686 10453 2.892215 TGATGGAGCTGAAATGTTGCAA 59.108 40.909 0.00 0.00 0.00 4.08
2687 10454 3.057104 TGATGGAGCTGAAATGTTGCAAG 60.057 43.478 0.00 0.00 0.00 4.01
2688 10455 2.585330 TGGAGCTGAAATGTTGCAAGA 58.415 42.857 0.00 0.00 0.00 3.02
2689 10456 2.555325 TGGAGCTGAAATGTTGCAAGAG 59.445 45.455 0.00 0.00 0.00 2.85
2690 10457 2.816087 GGAGCTGAAATGTTGCAAGAGA 59.184 45.455 0.00 0.00 0.00 3.10
2691 10458 3.365767 GGAGCTGAAATGTTGCAAGAGAC 60.366 47.826 0.00 0.00 0.00 3.36
2692 10459 3.216800 AGCTGAAATGTTGCAAGAGACA 58.783 40.909 0.00 0.00 0.00 3.41
2693 10460 3.004106 AGCTGAAATGTTGCAAGAGACAC 59.996 43.478 0.00 0.00 0.00 3.67
2694 10461 3.243168 GCTGAAATGTTGCAAGAGACACA 60.243 43.478 0.00 0.00 0.00 3.72
2695 10462 4.534168 CTGAAATGTTGCAAGAGACACAG 58.466 43.478 0.00 4.09 0.00 3.66
2696 10463 3.316029 TGAAATGTTGCAAGAGACACAGG 59.684 43.478 0.00 0.00 0.00 4.00
2697 10464 2.936919 ATGTTGCAAGAGACACAGGA 57.063 45.000 0.00 0.00 0.00 3.86
2698 10465 2.936919 TGTTGCAAGAGACACAGGAT 57.063 45.000 0.00 0.00 0.00 3.24
2699 10466 2.497138 TGTTGCAAGAGACACAGGATG 58.503 47.619 0.00 0.00 46.00 3.51
2700 10467 2.104622 TGTTGCAAGAGACACAGGATGA 59.895 45.455 0.00 0.00 39.69 2.92
2701 10468 2.462456 TGCAAGAGACACAGGATGAC 57.538 50.000 0.00 0.00 39.69 3.06
2702 10469 1.973515 TGCAAGAGACACAGGATGACT 59.026 47.619 0.00 0.00 39.69 3.41
2712 10479 1.442769 CAGGATGACTGTTGGGTTCG 58.557 55.000 0.00 0.00 42.42 3.95
2713 10480 0.324943 AGGATGACTGTTGGGTTCGG 59.675 55.000 0.00 0.00 0.00 4.30
2714 10481 0.036306 GGATGACTGTTGGGTTCGGT 59.964 55.000 0.00 0.00 0.00 4.69
2715 10482 1.156736 GATGACTGTTGGGTTCGGTG 58.843 55.000 0.00 0.00 0.00 4.94
2716 10483 0.472471 ATGACTGTTGGGTTCGGTGT 59.528 50.000 0.00 0.00 0.00 4.16
2717 10484 0.462937 TGACTGTTGGGTTCGGTGTG 60.463 55.000 0.00 0.00 0.00 3.82
2718 10485 1.782028 GACTGTTGGGTTCGGTGTGC 61.782 60.000 0.00 0.00 0.00 4.57
2719 10486 1.525995 CTGTTGGGTTCGGTGTGCT 60.526 57.895 0.00 0.00 0.00 4.40
2720 10487 0.250124 CTGTTGGGTTCGGTGTGCTA 60.250 55.000 0.00 0.00 0.00 3.49
2721 10488 0.180642 TGTTGGGTTCGGTGTGCTAA 59.819 50.000 0.00 0.00 0.00 3.09
2722 10489 1.202830 TGTTGGGTTCGGTGTGCTAAT 60.203 47.619 0.00 0.00 0.00 1.73
2723 10490 1.199097 GTTGGGTTCGGTGTGCTAATG 59.801 52.381 0.00 0.00 0.00 1.90
2724 10491 0.398696 TGGGTTCGGTGTGCTAATGT 59.601 50.000 0.00 0.00 0.00 2.71
2725 10492 1.624312 TGGGTTCGGTGTGCTAATGTA 59.376 47.619 0.00 0.00 0.00 2.29
2726 10493 2.004733 GGGTTCGGTGTGCTAATGTAC 58.995 52.381 0.00 0.00 0.00 2.90
2727 10494 2.004733 GGTTCGGTGTGCTAATGTACC 58.995 52.381 0.00 0.00 0.00 3.34
2728 10495 2.613474 GGTTCGGTGTGCTAATGTACCA 60.613 50.000 0.00 0.00 32.75 3.25
2729 10496 3.068560 GTTCGGTGTGCTAATGTACCAA 58.931 45.455 0.00 0.00 32.75 3.67
2730 10497 3.404224 TCGGTGTGCTAATGTACCAAA 57.596 42.857 0.00 0.00 32.75 3.28
2731 10498 3.331150 TCGGTGTGCTAATGTACCAAAG 58.669 45.455 0.00 0.00 32.75 2.77
2732 10499 2.159572 CGGTGTGCTAATGTACCAAAGC 60.160 50.000 4.06 4.06 32.75 3.51
2733 10500 2.159572 GGTGTGCTAATGTACCAAAGCG 60.160 50.000 6.10 0.00 37.80 4.68
2734 10501 2.739913 GTGTGCTAATGTACCAAAGCGA 59.260 45.455 0.00 0.00 37.80 4.93
2735 10502 3.374058 GTGTGCTAATGTACCAAAGCGAT 59.626 43.478 0.00 0.00 37.80 4.58
2736 10503 4.006989 TGTGCTAATGTACCAAAGCGATT 58.993 39.130 0.00 0.00 37.80 3.34
2737 10504 4.094294 TGTGCTAATGTACCAAAGCGATTC 59.906 41.667 0.00 0.00 37.80 2.52
2738 10505 4.094294 GTGCTAATGTACCAAAGCGATTCA 59.906 41.667 0.00 0.00 37.80 2.57
2739 10506 4.697828 TGCTAATGTACCAAAGCGATTCAA 59.302 37.500 0.00 0.00 37.80 2.69
2740 10507 5.028375 GCTAATGTACCAAAGCGATTCAAC 58.972 41.667 0.00 0.00 0.00 3.18
2741 10508 5.391523 GCTAATGTACCAAAGCGATTCAACA 60.392 40.000 0.00 0.00 0.00 3.33
2742 10509 4.685169 ATGTACCAAAGCGATTCAACAG 57.315 40.909 0.00 0.00 0.00 3.16
2743 10510 2.811431 TGTACCAAAGCGATTCAACAGG 59.189 45.455 0.00 0.00 0.00 4.00
2744 10511 1.981256 ACCAAAGCGATTCAACAGGT 58.019 45.000 0.00 0.00 0.00 4.00
2745 10512 3.134574 ACCAAAGCGATTCAACAGGTA 57.865 42.857 0.00 0.00 0.00 3.08
2746 10513 3.482436 ACCAAAGCGATTCAACAGGTAA 58.518 40.909 0.00 0.00 0.00 2.85
2747 10514 3.502211 ACCAAAGCGATTCAACAGGTAAG 59.498 43.478 0.00 0.00 0.00 2.34
2748 10515 3.119849 CCAAAGCGATTCAACAGGTAAGG 60.120 47.826 0.00 0.00 0.00 2.69
2749 10516 3.418684 AAGCGATTCAACAGGTAAGGT 57.581 42.857 0.00 0.00 0.00 3.50
2750 10517 2.973945 AGCGATTCAACAGGTAAGGTC 58.026 47.619 0.00 0.00 0.00 3.85
2751 10518 2.567615 AGCGATTCAACAGGTAAGGTCT 59.432 45.455 0.00 0.00 0.00 3.85
2752 10519 3.008049 AGCGATTCAACAGGTAAGGTCTT 59.992 43.478 0.00 0.00 0.00 3.01
2753 10520 3.125316 GCGATTCAACAGGTAAGGTCTTG 59.875 47.826 0.00 0.00 0.00 3.02
2754 10521 4.315803 CGATTCAACAGGTAAGGTCTTGT 58.684 43.478 0.00 0.00 0.00 3.16
2755 10522 4.152402 CGATTCAACAGGTAAGGTCTTGTG 59.848 45.833 0.00 0.00 0.00 3.33
2756 10523 4.764050 TTCAACAGGTAAGGTCTTGTGA 57.236 40.909 0.00 0.00 0.00 3.58
2757 10524 4.764050 TCAACAGGTAAGGTCTTGTGAA 57.236 40.909 0.00 0.00 0.00 3.18
2758 10525 5.304686 TCAACAGGTAAGGTCTTGTGAAT 57.695 39.130 0.00 0.00 0.00 2.57
2759 10526 6.428083 TCAACAGGTAAGGTCTTGTGAATA 57.572 37.500 0.00 0.00 0.00 1.75
2760 10527 7.016153 TCAACAGGTAAGGTCTTGTGAATAT 57.984 36.000 0.00 0.00 0.00 1.28
2761 10528 8.141298 TCAACAGGTAAGGTCTTGTGAATATA 57.859 34.615 0.00 0.00 0.00 0.86
2762 10529 8.258007 TCAACAGGTAAGGTCTTGTGAATATAG 58.742 37.037 0.00 0.00 0.00 1.31
2763 10530 7.735326 ACAGGTAAGGTCTTGTGAATATAGT 57.265 36.000 0.00 0.00 0.00 2.12
2764 10531 8.147244 ACAGGTAAGGTCTTGTGAATATAGTT 57.853 34.615 0.00 0.00 0.00 2.24
2765 10532 8.603304 ACAGGTAAGGTCTTGTGAATATAGTTT 58.397 33.333 0.00 0.00 0.00 2.66
2766 10533 8.883731 CAGGTAAGGTCTTGTGAATATAGTTTG 58.116 37.037 0.00 0.00 0.00 2.93
2767 10534 8.603304 AGGTAAGGTCTTGTGAATATAGTTTGT 58.397 33.333 0.00 0.00 0.00 2.83
2768 10535 8.665685 GGTAAGGTCTTGTGAATATAGTTTGTG 58.334 37.037 0.00 0.00 0.00 3.33
2769 10536 9.431887 GTAAGGTCTTGTGAATATAGTTTGTGA 57.568 33.333 0.00 0.00 0.00 3.58
2770 10537 8.553459 AAGGTCTTGTGAATATAGTTTGTGAG 57.447 34.615 0.00 0.00 0.00 3.51
2771 10538 7.907389 AGGTCTTGTGAATATAGTTTGTGAGA 58.093 34.615 0.00 0.00 0.00 3.27
2772 10539 8.543774 AGGTCTTGTGAATATAGTTTGTGAGAT 58.456 33.333 0.00 0.00 0.00 2.75
2773 10540 9.817809 GGTCTTGTGAATATAGTTTGTGAGATA 57.182 33.333 0.00 0.00 0.00 1.98
2812 10579 6.199937 TCTCTTTGAAAAATATCTGGCAGC 57.800 37.500 10.34 0.00 0.00 5.25
2813 10580 5.126061 TCTCTTTGAAAAATATCTGGCAGCC 59.874 40.000 10.34 3.66 0.00 4.85
2814 10581 4.771577 TCTTTGAAAAATATCTGGCAGCCA 59.228 37.500 15.23 15.23 0.00 4.75
2815 10582 5.245751 TCTTTGAAAAATATCTGGCAGCCAA 59.754 36.000 17.03 7.19 30.80 4.52
2816 10583 5.680594 TTGAAAAATATCTGGCAGCCAAT 57.319 34.783 17.03 14.02 30.80 3.16
2817 10584 5.013568 TGAAAAATATCTGGCAGCCAATG 57.986 39.130 17.03 4.76 30.80 2.82
2818 10585 4.467082 TGAAAAATATCTGGCAGCCAATGT 59.533 37.500 17.03 7.71 30.80 2.71
2819 10586 4.395959 AAAATATCTGGCAGCCAATGTG 57.604 40.909 17.03 3.50 30.80 3.21
2820 10587 3.301794 AATATCTGGCAGCCAATGTGA 57.698 42.857 17.03 9.74 30.80 3.58
2821 10588 2.336945 TATCTGGCAGCCAATGTGAG 57.663 50.000 17.03 2.23 30.80 3.51
2822 10589 0.330604 ATCTGGCAGCCAATGTGAGT 59.669 50.000 17.03 0.00 30.80 3.41
2823 10590 0.983467 TCTGGCAGCCAATGTGAGTA 59.017 50.000 17.03 0.00 30.80 2.59
2824 10591 1.350684 TCTGGCAGCCAATGTGAGTAA 59.649 47.619 17.03 0.00 30.80 2.24
2825 10592 1.470098 CTGGCAGCCAATGTGAGTAAC 59.530 52.381 17.03 0.00 30.80 2.50
2826 10593 1.202867 TGGCAGCCAATGTGAGTAACA 60.203 47.619 13.33 0.00 44.79 2.41
2835 10602 2.472695 TGTGAGTAACATGCACCCTC 57.527 50.000 0.00 0.00 32.36 4.30
2836 10603 1.696884 TGTGAGTAACATGCACCCTCA 59.303 47.619 0.00 0.00 32.36 3.86
2837 10604 2.105649 TGTGAGTAACATGCACCCTCAA 59.894 45.455 0.00 0.00 34.24 3.02
2838 10605 3.146066 GTGAGTAACATGCACCCTCAAA 58.854 45.455 0.00 0.00 34.24 2.69
2839 10606 3.058224 GTGAGTAACATGCACCCTCAAAC 60.058 47.826 0.00 0.00 34.24 2.93
2840 10607 3.181445 TGAGTAACATGCACCCTCAAACT 60.181 43.478 0.00 0.00 0.00 2.66
2841 10608 4.041075 TGAGTAACATGCACCCTCAAACTA 59.959 41.667 0.00 0.00 0.00 2.24
2842 10609 4.324267 AGTAACATGCACCCTCAAACTAC 58.676 43.478 0.00 0.00 0.00 2.73
2843 10610 3.508845 AACATGCACCCTCAAACTACT 57.491 42.857 0.00 0.00 0.00 2.57
2844 10611 4.634012 AACATGCACCCTCAAACTACTA 57.366 40.909 0.00 0.00 0.00 1.82
2845 10612 4.634012 ACATGCACCCTCAAACTACTAA 57.366 40.909 0.00 0.00 0.00 2.24
2846 10613 4.324267 ACATGCACCCTCAAACTACTAAC 58.676 43.478 0.00 0.00 0.00 2.34
2847 10614 3.412237 TGCACCCTCAAACTACTAACC 57.588 47.619 0.00 0.00 0.00 2.85
2848 10615 2.706723 TGCACCCTCAAACTACTAACCA 59.293 45.455 0.00 0.00 0.00 3.67
2849 10616 3.244422 TGCACCCTCAAACTACTAACCAG 60.244 47.826 0.00 0.00 0.00 4.00
2850 10617 3.244457 GCACCCTCAAACTACTAACCAGT 60.244 47.826 0.00 0.00 38.91 4.00
2851 10618 4.566987 CACCCTCAAACTACTAACCAGTC 58.433 47.826 0.00 0.00 36.14 3.51
2852 10619 3.257624 ACCCTCAAACTACTAACCAGTCG 59.742 47.826 0.00 0.00 36.14 4.18
2853 10620 3.368116 CCCTCAAACTACTAACCAGTCGG 60.368 52.174 0.00 0.00 36.14 4.79
2854 10621 3.251571 CTCAAACTACTAACCAGTCGGC 58.748 50.000 0.00 0.00 36.14 5.54
2855 10622 2.895404 TCAAACTACTAACCAGTCGGCT 59.105 45.455 0.00 0.00 36.14 5.52
2856 10623 4.081406 TCAAACTACTAACCAGTCGGCTA 58.919 43.478 0.00 0.00 36.14 3.93
2857 10624 4.708421 TCAAACTACTAACCAGTCGGCTAT 59.292 41.667 0.00 0.00 36.14 2.97
2858 10625 5.186409 TCAAACTACTAACCAGTCGGCTATT 59.814 40.000 0.00 0.00 36.14 1.73
2859 10626 4.650754 ACTACTAACCAGTCGGCTATTG 57.349 45.455 0.00 0.00 36.14 1.90
2860 10627 4.275810 ACTACTAACCAGTCGGCTATTGA 58.724 43.478 0.00 0.00 36.14 2.57
2861 10628 3.802948 ACTAACCAGTCGGCTATTGAG 57.197 47.619 0.00 0.00 34.57 3.02
2862 10629 3.362706 ACTAACCAGTCGGCTATTGAGA 58.637 45.455 0.00 0.00 34.57 3.27
2863 10630 3.961408 ACTAACCAGTCGGCTATTGAGAT 59.039 43.478 0.00 0.00 34.57 2.75
2864 10631 3.914426 AACCAGTCGGCTATTGAGATT 57.086 42.857 0.00 0.00 34.57 2.40
2865 10632 3.460857 ACCAGTCGGCTATTGAGATTC 57.539 47.619 0.00 0.00 34.57 2.52
2866 10633 2.766263 ACCAGTCGGCTATTGAGATTCA 59.234 45.455 0.00 0.00 34.57 2.57
2867 10634 3.126831 CCAGTCGGCTATTGAGATTCAC 58.873 50.000 0.00 0.00 0.00 3.18
2868 10635 3.430790 CCAGTCGGCTATTGAGATTCACA 60.431 47.826 0.00 0.00 0.00 3.58
2869 10636 3.553511 CAGTCGGCTATTGAGATTCACAC 59.446 47.826 0.00 0.00 0.00 3.82
2870 10637 3.195610 AGTCGGCTATTGAGATTCACACA 59.804 43.478 0.00 0.00 0.00 3.72
2871 10638 4.122776 GTCGGCTATTGAGATTCACACAT 58.877 43.478 0.00 0.00 0.00 3.21
2872 10639 4.210120 GTCGGCTATTGAGATTCACACATC 59.790 45.833 0.00 0.00 0.00 3.06
2873 10640 4.100035 TCGGCTATTGAGATTCACACATCT 59.900 41.667 0.00 0.00 36.12 2.90
2874 10641 5.301805 TCGGCTATTGAGATTCACACATCTA 59.698 40.000 0.00 0.00 33.36 1.98
2875 10642 5.985530 CGGCTATTGAGATTCACACATCTAA 59.014 40.000 0.00 0.00 33.36 2.10
2876 10643 6.648310 CGGCTATTGAGATTCACACATCTAAT 59.352 38.462 0.00 0.00 33.36 1.73
2877 10644 7.814587 CGGCTATTGAGATTCACACATCTAATA 59.185 37.037 0.00 0.00 33.36 0.98
2878 10645 9.494271 GGCTATTGAGATTCACACATCTAATAA 57.506 33.333 0.00 0.00 33.36 1.40
2903 10670 9.762381 AACATAGAAAAACTAATACAATGGGGA 57.238 29.630 0.00 0.00 34.56 4.81
2904 10671 9.936329 ACATAGAAAAACTAATACAATGGGGAT 57.064 29.630 0.00 0.00 34.56 3.85
2908 10675 8.917088 AGAAAAACTAATACAATGGGGATGATG 58.083 33.333 0.00 0.00 0.00 3.07
2909 10676 6.655078 AAACTAATACAATGGGGATGATGC 57.345 37.500 0.00 0.00 0.00 3.91
2910 10677 4.666512 ACTAATACAATGGGGATGATGCC 58.333 43.478 0.00 0.00 0.00 4.40
2911 10678 3.616343 AATACAATGGGGATGATGCCA 57.384 42.857 5.07 0.00 0.00 4.92
2912 10679 3.616343 ATACAATGGGGATGATGCCAA 57.384 42.857 5.07 0.00 0.00 4.52
2913 10680 2.250921 ACAATGGGGATGATGCCAAA 57.749 45.000 5.07 0.00 0.00 3.28
2914 10681 2.766736 ACAATGGGGATGATGCCAAAT 58.233 42.857 5.07 0.00 0.00 2.32
2915 10682 3.926198 ACAATGGGGATGATGCCAAATA 58.074 40.909 5.07 0.00 0.00 1.40
2916 10683 4.296912 ACAATGGGGATGATGCCAAATAA 58.703 39.130 5.07 0.00 0.00 1.40
2917 10684 4.720773 ACAATGGGGATGATGCCAAATAAA 59.279 37.500 5.07 0.00 0.00 1.40
2918 10685 5.370289 ACAATGGGGATGATGCCAAATAAAT 59.630 36.000 5.07 0.00 0.00 1.40
2919 10686 6.558014 ACAATGGGGATGATGCCAAATAAATA 59.442 34.615 5.07 0.00 0.00 1.40
2920 10687 7.072202 ACAATGGGGATGATGCCAAATAAATAA 59.928 33.333 5.07 0.00 0.00 1.40
2921 10688 7.817910 ATGGGGATGATGCCAAATAAATAAT 57.182 32.000 5.07 0.00 0.00 1.28
2922 10689 7.006865 TGGGGATGATGCCAAATAAATAATG 57.993 36.000 5.07 0.00 0.00 1.90
2923 10690 6.786461 TGGGGATGATGCCAAATAAATAATGA 59.214 34.615 5.07 0.00 0.00 2.57
2924 10691 7.099120 GGGGATGATGCCAAATAAATAATGAC 58.901 38.462 5.07 0.00 0.00 3.06
2925 10692 7.038799 GGGGATGATGCCAAATAAATAATGACT 60.039 37.037 5.07 0.00 0.00 3.41
2926 10693 8.370182 GGGATGATGCCAAATAAATAATGACTT 58.630 33.333 0.00 0.00 0.00 3.01
2927 10694 9.415544 GGATGATGCCAAATAAATAATGACTTC 57.584 33.333 0.00 0.00 0.00 3.01
2933 10700 9.859427 TGCCAAATAAATAATGACTTCTTTCAG 57.141 29.630 0.00 0.00 0.00 3.02
2934 10701 8.811378 GCCAAATAAATAATGACTTCTTTCAGC 58.189 33.333 0.00 0.00 0.00 4.26
2941 10708 7.750229 ATAATGACTTCTTTCAGCTGTTTCA 57.250 32.000 14.67 7.25 0.00 2.69
2942 10709 6.645790 AATGACTTCTTTCAGCTGTTTCAT 57.354 33.333 14.67 9.08 0.00 2.57
2943 10710 5.428496 TGACTTCTTTCAGCTGTTTCATG 57.572 39.130 14.67 4.43 0.00 3.07
2944 10711 5.125356 TGACTTCTTTCAGCTGTTTCATGA 58.875 37.500 14.67 0.00 0.00 3.07
2945 10712 5.766670 TGACTTCTTTCAGCTGTTTCATGAT 59.233 36.000 14.67 0.00 0.00 2.45
2946 10713 6.072838 TGACTTCTTTCAGCTGTTTCATGATC 60.073 38.462 14.67 5.06 0.00 2.92
2947 10714 6.002704 ACTTCTTTCAGCTGTTTCATGATCT 58.997 36.000 14.67 0.00 0.00 2.75
2948 10715 7.164122 ACTTCTTTCAGCTGTTTCATGATCTA 58.836 34.615 14.67 0.00 0.00 1.98
2949 10716 7.828223 ACTTCTTTCAGCTGTTTCATGATCTAT 59.172 33.333 14.67 0.00 0.00 1.98
2950 10717 9.322773 CTTCTTTCAGCTGTTTCATGATCTATA 57.677 33.333 14.67 0.00 0.00 1.31
2951 10718 9.671279 TTCTTTCAGCTGTTTCATGATCTATAA 57.329 29.630 14.67 0.00 0.00 0.98
2952 10719 9.322773 TCTTTCAGCTGTTTCATGATCTATAAG 57.677 33.333 14.67 0.00 0.00 1.73
2953 10720 7.488187 TTCAGCTGTTTCATGATCTATAAGC 57.512 36.000 14.67 0.91 0.00 3.09
2954 10721 6.824553 TCAGCTGTTTCATGATCTATAAGCT 58.175 36.000 14.67 3.30 38.95 3.74
2955 10722 6.889494 CAGCTGTTTCATGATCTATAAGCTG 58.111 40.000 19.72 19.72 46.20 4.24
2956 10723 6.824553 AGCTGTTTCATGATCTATAAGCTGA 58.175 36.000 12.32 0.00 37.12 4.26
2957 10724 7.278135 AGCTGTTTCATGATCTATAAGCTGAA 58.722 34.615 12.32 0.00 37.12 3.02
2958 10725 7.772292 AGCTGTTTCATGATCTATAAGCTGAAA 59.228 33.333 12.32 0.00 37.12 2.69
2959 10726 8.068977 GCTGTTTCATGATCTATAAGCTGAAAG 58.931 37.037 0.00 0.00 34.38 2.62
2960 10727 9.107177 CTGTTTCATGATCTATAAGCTGAAAGT 57.893 33.333 0.00 0.00 34.38 2.66
2998 10765 9.101655 AGCCATTTTATTATTTCAAACATCAGC 57.898 29.630 0.00 0.00 0.00 4.26
2999 10766 8.337532 GCCATTTTATTATTTCAAACATCAGCC 58.662 33.333 0.00 0.00 0.00 4.85
3000 10767 9.381033 CCATTTTATTATTTCAAACATCAGCCA 57.619 29.630 0.00 0.00 0.00 4.75
3002 10769 9.941325 ATTTTATTATTTCAAACATCAGCCACA 57.059 25.926 0.00 0.00 0.00 4.17
3003 10770 9.941325 TTTTATTATTTCAAACATCAGCCACAT 57.059 25.926 0.00 0.00 0.00 3.21
3004 10771 9.585099 TTTATTATTTCAAACATCAGCCACATC 57.415 29.630 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2155 9885 5.637006 AGAATATAGCTAGCTGAGGTTCG 57.363 43.478 27.68 0.00 37.09 3.95
2226 9957 7.822334 TCAAGAAGTTACAGTTTCAACAGAAGA 59.178 33.333 0.00 0.00 0.00 2.87
2250 9982 9.308000 ACAACTGACAAGGGAAATTATTATTCA 57.692 29.630 0.00 0.00 0.00 2.57
2305 10049 4.696402 ACGTGGAAAAAGACTGTGTTACAA 59.304 37.500 0.00 0.00 0.00 2.41
2345 10092 6.567602 AGTGATCTGGGTATTTAAGAAGCT 57.432 37.500 0.00 0.00 0.00 3.74
2407 10170 2.424956 GCCCTCATGCGAAGAAGAAAAT 59.575 45.455 0.00 0.00 0.00 1.82
2416 10179 0.901827 TAACTCAGCCCTCATGCGAA 59.098 50.000 0.00 0.00 36.02 4.70
2417 10180 1.123077 ATAACTCAGCCCTCATGCGA 58.877 50.000 0.00 0.00 36.02 5.10
2418 10181 1.959042 AATAACTCAGCCCTCATGCG 58.041 50.000 0.00 0.00 36.02 4.73
2419 10182 6.042638 TCTATAATAACTCAGCCCTCATGC 57.957 41.667 0.00 0.00 0.00 4.06
2420 10183 7.125507 AGGATCTATAATAACTCAGCCCTCATG 59.874 40.741 0.00 0.00 0.00 3.07
2421 10184 7.195474 AGGATCTATAATAACTCAGCCCTCAT 58.805 38.462 0.00 0.00 0.00 2.90
2422 10185 6.565974 AGGATCTATAATAACTCAGCCCTCA 58.434 40.000 0.00 0.00 0.00 3.86
2423 10186 7.489239 AAGGATCTATAATAACTCAGCCCTC 57.511 40.000 0.00 0.00 0.00 4.30
2424 10187 7.037945 GGAAAGGATCTATAATAACTCAGCCCT 60.038 40.741 0.00 0.00 0.00 5.19
2425 10188 7.037945 AGGAAAGGATCTATAATAACTCAGCCC 60.038 40.741 0.00 0.00 0.00 5.19
2426 10189 7.821846 CAGGAAAGGATCTATAATAACTCAGCC 59.178 40.741 0.00 0.00 0.00 4.85
2427 10190 8.589338 TCAGGAAAGGATCTATAATAACTCAGC 58.411 37.037 0.00 0.00 0.00 4.26
2467 10230 8.133024 AGCTACCTCATAATGAAGAATCTAGG 57.867 38.462 0.00 0.00 0.00 3.02
2486 10249 9.449719 AAGCACCATAATGTATAAATAGCTACC 57.550 33.333 0.00 0.00 0.00 3.18
2507 10270 7.561237 TTGCAACGAATATTTTCTAAAGCAC 57.439 32.000 0.00 0.00 0.00 4.40
2524 10288 7.908193 AGAAAACTACATACTTTTTGCAACG 57.092 32.000 0.00 0.00 0.00 4.10
2553 10317 6.200854 GGAAAACAACTCACTTTTGGCAATAG 59.799 38.462 14.94 14.94 0.00 1.73
2554 10318 6.045955 GGAAAACAACTCACTTTTGGCAATA 58.954 36.000 0.00 0.00 0.00 1.90
2555 10319 4.875536 GGAAAACAACTCACTTTTGGCAAT 59.124 37.500 0.00 0.00 0.00 3.56
2560 10327 6.202516 TGTAGGGAAAACAACTCACTTTTG 57.797 37.500 0.00 0.00 0.00 2.44
2590 10357 7.805542 CAGTGAGTCTATTACATAGATGAACCG 59.194 40.741 0.00 0.00 43.25 4.44
2591 10358 8.634444 ACAGTGAGTCTATTACATAGATGAACC 58.366 37.037 0.00 0.00 43.25 3.62
2600 10367 9.209175 GAGAAAACAACAGTGAGTCTATTACAT 57.791 33.333 0.00 0.00 0.00 2.29
2601 10368 8.201464 TGAGAAAACAACAGTGAGTCTATTACA 58.799 33.333 0.00 0.00 0.00 2.41
2602 10369 8.589335 TGAGAAAACAACAGTGAGTCTATTAC 57.411 34.615 0.00 0.00 0.00 1.89
2604 10371 9.209175 GTATGAGAAAACAACAGTGAGTCTATT 57.791 33.333 0.00 0.00 0.00 1.73
2605 10372 8.589338 AGTATGAGAAAACAACAGTGAGTCTAT 58.411 33.333 0.00 0.00 0.00 1.98
2606 10373 7.952671 AGTATGAGAAAACAACAGTGAGTCTA 58.047 34.615 0.00 0.00 0.00 2.59
2607 10374 6.821388 AGTATGAGAAAACAACAGTGAGTCT 58.179 36.000 0.00 0.00 0.00 3.24
2608 10375 7.011482 ACAAGTATGAGAAAACAACAGTGAGTC 59.989 37.037 0.00 0.00 0.00 3.36
2609 10376 6.823689 ACAAGTATGAGAAAACAACAGTGAGT 59.176 34.615 0.00 0.00 0.00 3.41
2610 10377 7.128331 CACAAGTATGAGAAAACAACAGTGAG 58.872 38.462 0.00 0.00 0.00 3.51
2611 10378 6.458206 GCACAAGTATGAGAAAACAACAGTGA 60.458 38.462 0.00 0.00 0.00 3.41
2612 10379 5.682862 GCACAAGTATGAGAAAACAACAGTG 59.317 40.000 0.00 0.00 0.00 3.66
2613 10380 5.590259 AGCACAAGTATGAGAAAACAACAGT 59.410 36.000 0.00 0.00 0.00 3.55
2614 10381 6.064846 AGCACAAGTATGAGAAAACAACAG 57.935 37.500 0.00 0.00 0.00 3.16
2615 10382 6.449635 AAGCACAAGTATGAGAAAACAACA 57.550 33.333 0.00 0.00 0.00 3.33
2625 10392 9.674068 TGGTTGTATTTATAAGCACAAGTATGA 57.326 29.630 11.95 0.00 31.46 2.15
2629 10396 7.759433 GCAATGGTTGTATTTATAAGCACAAGT 59.241 33.333 11.95 2.96 37.56 3.16
2630 10397 7.975616 AGCAATGGTTGTATTTATAAGCACAAG 59.024 33.333 11.95 4.66 37.56 3.16
2631 10398 7.835822 AGCAATGGTTGTATTTATAAGCACAA 58.164 30.769 8.93 8.93 37.56 3.33
2632 10399 7.403312 AGCAATGGTTGTATTTATAAGCACA 57.597 32.000 1.81 0.00 37.56 4.57
2633 10400 6.632834 CGAGCAATGGTTGTATTTATAAGCAC 59.367 38.462 1.81 0.00 37.56 4.40
2634 10401 6.317642 ACGAGCAATGGTTGTATTTATAAGCA 59.682 34.615 3.11 2.21 38.72 3.91
2635 10402 6.632834 CACGAGCAATGGTTGTATTTATAAGC 59.367 38.462 4.87 0.00 0.00 3.09
2636 10403 7.011950 TCCACGAGCAATGGTTGTATTTATAAG 59.988 37.037 4.87 0.00 38.47 1.73
2637 10404 6.824196 TCCACGAGCAATGGTTGTATTTATAA 59.176 34.615 4.87 0.00 38.47 0.98
2638 10405 6.350103 TCCACGAGCAATGGTTGTATTTATA 58.650 36.000 4.87 0.00 38.47 0.98
2639 10406 5.189928 TCCACGAGCAATGGTTGTATTTAT 58.810 37.500 4.87 0.00 38.47 1.40
2640 10407 4.580868 TCCACGAGCAATGGTTGTATTTA 58.419 39.130 4.87 0.00 38.47 1.40
2641 10408 3.417101 TCCACGAGCAATGGTTGTATTT 58.583 40.909 4.87 0.00 38.47 1.40
2642 10409 3.066291 TCCACGAGCAATGGTTGTATT 57.934 42.857 4.87 0.00 38.47 1.89
2643 10410 2.779755 TCCACGAGCAATGGTTGTAT 57.220 45.000 4.87 0.00 38.47 2.29
2644 10411 2.290008 ACATCCACGAGCAATGGTTGTA 60.290 45.455 4.87 0.00 44.63 2.41
2645 10412 1.167851 CATCCACGAGCAATGGTTGT 58.832 50.000 0.00 0.00 38.47 3.32
2646 10413 1.135603 CACATCCACGAGCAATGGTTG 60.136 52.381 0.00 0.00 41.06 3.77
2647 10414 1.167851 CACATCCACGAGCAATGGTT 58.832 50.000 0.00 0.00 38.47 3.67
2648 10415 0.324614 TCACATCCACGAGCAATGGT 59.675 50.000 0.00 0.00 38.47 3.55
2649 10416 1.332686 CATCACATCCACGAGCAATGG 59.667 52.381 0.00 0.00 38.71 3.16
2650 10417 1.332686 CCATCACATCCACGAGCAATG 59.667 52.381 0.00 0.00 0.00 2.82
2651 10418 1.210234 TCCATCACATCCACGAGCAAT 59.790 47.619 0.00 0.00 0.00 3.56
2652 10419 0.612744 TCCATCACATCCACGAGCAA 59.387 50.000 0.00 0.00 0.00 3.91
2653 10420 0.176449 CTCCATCACATCCACGAGCA 59.824 55.000 0.00 0.00 0.00 4.26
2654 10421 1.156645 GCTCCATCACATCCACGAGC 61.157 60.000 0.00 0.00 36.33 5.03
2655 10422 0.463204 AGCTCCATCACATCCACGAG 59.537 55.000 0.00 0.00 0.00 4.18
2656 10423 0.176449 CAGCTCCATCACATCCACGA 59.824 55.000 0.00 0.00 0.00 4.35
2657 10424 0.176449 TCAGCTCCATCACATCCACG 59.824 55.000 0.00 0.00 0.00 4.94
2658 10425 2.408271 TTCAGCTCCATCACATCCAC 57.592 50.000 0.00 0.00 0.00 4.02
2659 10426 3.284617 CATTTCAGCTCCATCACATCCA 58.715 45.455 0.00 0.00 0.00 3.41
2660 10427 3.285484 ACATTTCAGCTCCATCACATCC 58.715 45.455 0.00 0.00 0.00 3.51
2661 10428 4.669318 CAACATTTCAGCTCCATCACATC 58.331 43.478 0.00 0.00 0.00 3.06
2662 10429 3.119245 GCAACATTTCAGCTCCATCACAT 60.119 43.478 0.00 0.00 0.00 3.21
2663 10430 2.229543 GCAACATTTCAGCTCCATCACA 59.770 45.455 0.00 0.00 0.00 3.58
2664 10431 2.229543 TGCAACATTTCAGCTCCATCAC 59.770 45.455 0.00 0.00 0.00 3.06
2665 10432 2.516906 TGCAACATTTCAGCTCCATCA 58.483 42.857 0.00 0.00 0.00 3.07
2666 10433 3.192001 TCTTGCAACATTTCAGCTCCATC 59.808 43.478 0.00 0.00 0.00 3.51
2667 10434 3.159472 TCTTGCAACATTTCAGCTCCAT 58.841 40.909 0.00 0.00 0.00 3.41
2668 10435 2.555325 CTCTTGCAACATTTCAGCTCCA 59.445 45.455 0.00 0.00 0.00 3.86
2669 10436 2.816087 TCTCTTGCAACATTTCAGCTCC 59.184 45.455 0.00 0.00 0.00 4.70
2670 10437 3.251729 TGTCTCTTGCAACATTTCAGCTC 59.748 43.478 0.00 0.00 0.00 4.09
2671 10438 3.004106 GTGTCTCTTGCAACATTTCAGCT 59.996 43.478 0.00 0.00 0.00 4.24
2672 10439 3.243168 TGTGTCTCTTGCAACATTTCAGC 60.243 43.478 0.00 0.00 0.00 4.26
2673 10440 4.534168 CTGTGTCTCTTGCAACATTTCAG 58.466 43.478 0.00 0.00 0.00 3.02
2674 10441 3.316029 CCTGTGTCTCTTGCAACATTTCA 59.684 43.478 0.00 0.00 0.00 2.69
2675 10442 3.565482 TCCTGTGTCTCTTGCAACATTTC 59.435 43.478 0.00 0.00 0.00 2.17
2676 10443 3.554934 TCCTGTGTCTCTTGCAACATTT 58.445 40.909 0.00 0.00 0.00 2.32
2677 10444 3.213206 TCCTGTGTCTCTTGCAACATT 57.787 42.857 0.00 0.00 0.00 2.71
2678 10445 2.936919 TCCTGTGTCTCTTGCAACAT 57.063 45.000 0.00 0.00 0.00 2.71
2679 10446 2.104622 TCATCCTGTGTCTCTTGCAACA 59.895 45.455 0.00 0.00 0.00 3.33
2680 10447 2.481952 GTCATCCTGTGTCTCTTGCAAC 59.518 50.000 0.00 0.00 0.00 4.17
2681 10448 2.369860 AGTCATCCTGTGTCTCTTGCAA 59.630 45.455 0.00 0.00 0.00 4.08
2682 10449 1.973515 AGTCATCCTGTGTCTCTTGCA 59.026 47.619 0.00 0.00 0.00 4.08
2683 10450 2.344950 CAGTCATCCTGTGTCTCTTGC 58.655 52.381 0.00 0.00 36.37 4.01
2694 10461 0.324943 CCGAACCCAACAGTCATCCT 59.675 55.000 0.00 0.00 0.00 3.24
2695 10462 0.036306 ACCGAACCCAACAGTCATCC 59.964 55.000 0.00 0.00 0.00 3.51
2696 10463 1.156736 CACCGAACCCAACAGTCATC 58.843 55.000 0.00 0.00 0.00 2.92
2697 10464 0.472471 ACACCGAACCCAACAGTCAT 59.528 50.000 0.00 0.00 0.00 3.06
2698 10465 0.462937 CACACCGAACCCAACAGTCA 60.463 55.000 0.00 0.00 0.00 3.41
2699 10466 1.782028 GCACACCGAACCCAACAGTC 61.782 60.000 0.00 0.00 0.00 3.51
2700 10467 1.822186 GCACACCGAACCCAACAGT 60.822 57.895 0.00 0.00 0.00 3.55
2701 10468 0.250124 TAGCACACCGAACCCAACAG 60.250 55.000 0.00 0.00 0.00 3.16
2702 10469 0.180642 TTAGCACACCGAACCCAACA 59.819 50.000 0.00 0.00 0.00 3.33
2703 10470 1.199097 CATTAGCACACCGAACCCAAC 59.801 52.381 0.00 0.00 0.00 3.77
2704 10471 1.202830 ACATTAGCACACCGAACCCAA 60.203 47.619 0.00 0.00 0.00 4.12
2705 10472 0.398696 ACATTAGCACACCGAACCCA 59.601 50.000 0.00 0.00 0.00 4.51
2706 10473 2.004733 GTACATTAGCACACCGAACCC 58.995 52.381 0.00 0.00 0.00 4.11
2707 10474 2.004733 GGTACATTAGCACACCGAACC 58.995 52.381 0.00 0.00 0.00 3.62
2708 10475 2.690786 TGGTACATTAGCACACCGAAC 58.309 47.619 0.00 0.00 33.55 3.95
2709 10476 3.404224 TTGGTACATTAGCACACCGAA 57.596 42.857 0.00 0.00 39.30 4.30
2710 10477 3.331150 CTTTGGTACATTAGCACACCGA 58.669 45.455 0.00 0.00 39.30 4.69
2711 10478 2.159572 GCTTTGGTACATTAGCACACCG 60.160 50.000 0.00 0.00 43.09 4.94
2712 10479 2.159572 CGCTTTGGTACATTAGCACACC 60.160 50.000 11.33 0.00 43.55 4.16
2713 10480 2.739913 TCGCTTTGGTACATTAGCACAC 59.260 45.455 11.33 0.00 43.55 3.82
2714 10481 3.046968 TCGCTTTGGTACATTAGCACA 57.953 42.857 11.33 0.00 43.55 4.57
2715 10482 4.094294 TGAATCGCTTTGGTACATTAGCAC 59.906 41.667 11.33 2.91 43.55 4.40
2716 10483 4.257731 TGAATCGCTTTGGTACATTAGCA 58.742 39.130 11.33 0.00 43.55 3.49
2717 10484 4.875544 TGAATCGCTTTGGTACATTAGC 57.124 40.909 0.00 0.00 41.14 3.09
2718 10485 6.176975 TGTTGAATCGCTTTGGTACATTAG 57.823 37.500 0.00 0.00 39.30 1.73
2719 10486 5.123186 CCTGTTGAATCGCTTTGGTACATTA 59.877 40.000 0.00 0.00 39.30 1.90
2720 10487 4.082787 CCTGTTGAATCGCTTTGGTACATT 60.083 41.667 0.00 0.00 39.30 2.71
2721 10488 3.440173 CCTGTTGAATCGCTTTGGTACAT 59.560 43.478 0.00 0.00 39.30 2.29
2722 10489 2.811431 CCTGTTGAATCGCTTTGGTACA 59.189 45.455 0.00 0.00 0.00 2.90
2723 10490 2.812011 ACCTGTTGAATCGCTTTGGTAC 59.188 45.455 0.00 0.00 0.00 3.34
2724 10491 3.134574 ACCTGTTGAATCGCTTTGGTA 57.865 42.857 0.00 0.00 0.00 3.25
2725 10492 1.981256 ACCTGTTGAATCGCTTTGGT 58.019 45.000 0.00 0.00 0.00 3.67
2726 10493 3.119849 CCTTACCTGTTGAATCGCTTTGG 60.120 47.826 0.00 0.00 0.00 3.28
2727 10494 3.502211 ACCTTACCTGTTGAATCGCTTTG 59.498 43.478 0.00 0.00 0.00 2.77
2728 10495 3.751518 ACCTTACCTGTTGAATCGCTTT 58.248 40.909 0.00 0.00 0.00 3.51
2729 10496 3.008049 AGACCTTACCTGTTGAATCGCTT 59.992 43.478 0.00 0.00 0.00 4.68
2730 10497 2.567615 AGACCTTACCTGTTGAATCGCT 59.432 45.455 0.00 0.00 0.00 4.93
2731 10498 2.973945 AGACCTTACCTGTTGAATCGC 58.026 47.619 0.00 0.00 0.00 4.58
2732 10499 4.152402 CACAAGACCTTACCTGTTGAATCG 59.848 45.833 0.00 0.00 0.00 3.34
2733 10500 5.305585 TCACAAGACCTTACCTGTTGAATC 58.694 41.667 0.00 0.00 0.00 2.52
2734 10501 5.304686 TCACAAGACCTTACCTGTTGAAT 57.695 39.130 0.00 0.00 0.00 2.57
2735 10502 4.764050 TCACAAGACCTTACCTGTTGAA 57.236 40.909 0.00 0.00 0.00 2.69
2736 10503 4.764050 TTCACAAGACCTTACCTGTTGA 57.236 40.909 0.00 0.00 0.00 3.18
2737 10504 8.041323 ACTATATTCACAAGACCTTACCTGTTG 58.959 37.037 0.00 0.00 0.00 3.33
2738 10505 8.147244 ACTATATTCACAAGACCTTACCTGTT 57.853 34.615 0.00 0.00 0.00 3.16
2739 10506 7.735326 ACTATATTCACAAGACCTTACCTGT 57.265 36.000 0.00 0.00 0.00 4.00
2740 10507 8.883731 CAAACTATATTCACAAGACCTTACCTG 58.116 37.037 0.00 0.00 0.00 4.00
2741 10508 8.603304 ACAAACTATATTCACAAGACCTTACCT 58.397 33.333 0.00 0.00 0.00 3.08
2742 10509 8.665685 CACAAACTATATTCACAAGACCTTACC 58.334 37.037 0.00 0.00 0.00 2.85
2743 10510 9.431887 TCACAAACTATATTCACAAGACCTTAC 57.568 33.333 0.00 0.00 0.00 2.34
2744 10511 9.653287 CTCACAAACTATATTCACAAGACCTTA 57.347 33.333 0.00 0.00 0.00 2.69
2745 10512 8.375506 TCTCACAAACTATATTCACAAGACCTT 58.624 33.333 0.00 0.00 0.00 3.50
2746 10513 7.907389 TCTCACAAACTATATTCACAAGACCT 58.093 34.615 0.00 0.00 0.00 3.85
2747 10514 8.723942 ATCTCACAAACTATATTCACAAGACC 57.276 34.615 0.00 0.00 0.00 3.85
2787 10554 7.092716 GCTGCCAGATATTTTTCAAAGAGAAA 58.907 34.615 0.00 0.00 44.21 2.52
2788 10555 6.350445 GGCTGCCAGATATTTTTCAAAGAGAA 60.350 38.462 15.17 0.00 0.00 2.87
2789 10556 5.126061 GGCTGCCAGATATTTTTCAAAGAGA 59.874 40.000 15.17 0.00 0.00 3.10
2790 10557 5.105635 TGGCTGCCAGATATTTTTCAAAGAG 60.106 40.000 19.30 0.00 0.00 2.85
2791 10558 4.771577 TGGCTGCCAGATATTTTTCAAAGA 59.228 37.500 19.30 0.00 0.00 2.52
2792 10559 5.075858 TGGCTGCCAGATATTTTTCAAAG 57.924 39.130 19.30 0.00 0.00 2.77
2793 10560 5.480642 TTGGCTGCCAGATATTTTTCAAA 57.519 34.783 22.17 0.00 33.81 2.69
2794 10561 5.046448 ACATTGGCTGCCAGATATTTTTCAA 60.046 36.000 22.17 2.33 33.81 2.69
2795 10562 4.467082 ACATTGGCTGCCAGATATTTTTCA 59.533 37.500 22.17 2.90 33.81 2.69
2796 10563 4.807304 CACATTGGCTGCCAGATATTTTTC 59.193 41.667 22.17 0.00 33.81 2.29
2797 10564 4.467082 TCACATTGGCTGCCAGATATTTTT 59.533 37.500 22.17 0.00 33.81 1.94
2798 10565 4.025360 TCACATTGGCTGCCAGATATTTT 58.975 39.130 22.17 0.00 33.81 1.82
2799 10566 3.634504 TCACATTGGCTGCCAGATATTT 58.365 40.909 22.17 2.97 33.81 1.40
2800 10567 3.220110 CTCACATTGGCTGCCAGATATT 58.780 45.455 22.17 3.07 33.81 1.28
2801 10568 2.174210 ACTCACATTGGCTGCCAGATAT 59.826 45.455 22.17 10.09 33.81 1.63
2802 10569 1.561076 ACTCACATTGGCTGCCAGATA 59.439 47.619 22.17 7.84 33.81 1.98
2803 10570 0.330604 ACTCACATTGGCTGCCAGAT 59.669 50.000 22.17 14.86 33.81 2.90
2804 10571 0.983467 TACTCACATTGGCTGCCAGA 59.017 50.000 22.17 14.31 33.81 3.86
2805 10572 1.470098 GTTACTCACATTGGCTGCCAG 59.530 52.381 22.17 13.83 33.81 4.85
2806 10573 1.202867 TGTTACTCACATTGGCTGCCA 60.203 47.619 19.30 19.30 0.00 4.92
2807 10574 1.533625 TGTTACTCACATTGGCTGCC 58.466 50.000 12.87 12.87 0.00 4.85
2808 10575 2.733227 GCATGTTACTCACATTGGCTGC 60.733 50.000 0.00 0.00 44.40 5.25
2809 10576 2.488937 TGCATGTTACTCACATTGGCTG 59.511 45.455 0.00 0.00 44.40 4.85
2810 10577 2.489329 GTGCATGTTACTCACATTGGCT 59.511 45.455 0.00 0.00 44.40 4.75
2811 10578 2.415893 GGTGCATGTTACTCACATTGGC 60.416 50.000 0.00 0.00 44.40 4.52
2812 10579 2.164219 GGGTGCATGTTACTCACATTGG 59.836 50.000 0.00 0.00 44.40 3.16
2813 10580 3.084039 AGGGTGCATGTTACTCACATTG 58.916 45.455 0.00 0.00 44.40 2.82
2814 10581 3.244875 TGAGGGTGCATGTTACTCACATT 60.245 43.478 0.00 0.00 44.40 2.71
2816 10583 1.696884 TGAGGGTGCATGTTACTCACA 59.303 47.619 0.00 2.42 40.71 3.58
2817 10584 2.472695 TGAGGGTGCATGTTACTCAC 57.527 50.000 0.00 0.00 33.62 3.51
2818 10585 3.146066 GTTTGAGGGTGCATGTTACTCA 58.854 45.455 0.00 6.26 36.49 3.41
2819 10586 3.412386 AGTTTGAGGGTGCATGTTACTC 58.588 45.455 0.00 0.00 0.00 2.59
2820 10587 3.508845 AGTTTGAGGGTGCATGTTACT 57.491 42.857 0.00 0.00 0.00 2.24
2821 10588 4.324267 AGTAGTTTGAGGGTGCATGTTAC 58.676 43.478 0.00 0.00 0.00 2.50
2822 10589 4.634012 AGTAGTTTGAGGGTGCATGTTA 57.366 40.909 0.00 0.00 0.00 2.41
2823 10590 3.508845 AGTAGTTTGAGGGTGCATGTT 57.491 42.857 0.00 0.00 0.00 2.71
2824 10591 4.324267 GTTAGTAGTTTGAGGGTGCATGT 58.676 43.478 0.00 0.00 0.00 3.21
2825 10592 3.689649 GGTTAGTAGTTTGAGGGTGCATG 59.310 47.826 0.00 0.00 0.00 4.06
2826 10593 3.329520 TGGTTAGTAGTTTGAGGGTGCAT 59.670 43.478 0.00 0.00 0.00 3.96
2827 10594 2.706723 TGGTTAGTAGTTTGAGGGTGCA 59.293 45.455 0.00 0.00 0.00 4.57
2828 10595 3.244457 ACTGGTTAGTAGTTTGAGGGTGC 60.244 47.826 0.00 0.00 34.74 5.01
2829 10596 4.566987 GACTGGTTAGTAGTTTGAGGGTG 58.433 47.826 0.00 0.00 37.25 4.61
2830 10597 3.257624 CGACTGGTTAGTAGTTTGAGGGT 59.742 47.826 0.00 0.00 37.25 4.34
2831 10598 3.368116 CCGACTGGTTAGTAGTTTGAGGG 60.368 52.174 0.00 0.00 37.25 4.30
2832 10599 3.846360 CCGACTGGTTAGTAGTTTGAGG 58.154 50.000 0.00 0.00 37.25 3.86
2833 10600 3.056749 AGCCGACTGGTTAGTAGTTTGAG 60.057 47.826 0.00 0.00 37.25 3.02
2834 10601 2.895404 AGCCGACTGGTTAGTAGTTTGA 59.105 45.455 0.00 0.00 37.25 2.69
2835 10602 3.314541 AGCCGACTGGTTAGTAGTTTG 57.685 47.619 0.00 0.00 37.25 2.93
2836 10603 5.186409 TCAATAGCCGACTGGTTAGTAGTTT 59.814 40.000 0.00 0.00 37.25 2.66
2837 10604 4.708421 TCAATAGCCGACTGGTTAGTAGTT 59.292 41.667 0.00 0.00 37.25 2.24
2838 10605 4.275810 TCAATAGCCGACTGGTTAGTAGT 58.724 43.478 0.00 0.00 37.25 2.73
2839 10606 4.579340 TCTCAATAGCCGACTGGTTAGTAG 59.421 45.833 0.00 0.00 37.25 2.57
2840 10607 4.529897 TCTCAATAGCCGACTGGTTAGTA 58.470 43.478 0.00 0.00 37.25 1.82
2841 10608 3.362706 TCTCAATAGCCGACTGGTTAGT 58.637 45.455 0.00 0.00 40.66 2.24
2842 10609 4.592485 ATCTCAATAGCCGACTGGTTAG 57.408 45.455 0.00 0.00 34.12 2.34
2843 10610 4.404394 TGAATCTCAATAGCCGACTGGTTA 59.596 41.667 0.00 0.00 37.67 2.85
2844 10611 3.197766 TGAATCTCAATAGCCGACTGGTT 59.802 43.478 0.00 0.00 37.67 3.67
2845 10612 2.766263 TGAATCTCAATAGCCGACTGGT 59.234 45.455 0.00 0.00 37.67 4.00
2846 10613 3.126831 GTGAATCTCAATAGCCGACTGG 58.873 50.000 0.00 0.00 38.77 4.00
2847 10614 3.553511 GTGTGAATCTCAATAGCCGACTG 59.446 47.826 0.00 0.00 0.00 3.51
2848 10615 3.195610 TGTGTGAATCTCAATAGCCGACT 59.804 43.478 0.00 0.00 0.00 4.18
2849 10616 3.521560 TGTGTGAATCTCAATAGCCGAC 58.478 45.455 0.00 0.00 0.00 4.79
2850 10617 3.885724 TGTGTGAATCTCAATAGCCGA 57.114 42.857 0.00 0.00 0.00 5.54
2851 10618 4.375272 AGATGTGTGAATCTCAATAGCCG 58.625 43.478 0.00 0.00 30.91 5.52
2852 10619 7.976135 ATTAGATGTGTGAATCTCAATAGCC 57.024 36.000 0.00 0.00 37.98 3.93
2877 10644 9.762381 TCCCCATTGTATTAGTTTTTCTATGTT 57.238 29.630 0.00 0.00 0.00 2.71
2878 10645 9.936329 ATCCCCATTGTATTAGTTTTTCTATGT 57.064 29.630 0.00 0.00 0.00 2.29
2882 10649 8.917088 CATCATCCCCATTGTATTAGTTTTTCT 58.083 33.333 0.00 0.00 0.00 2.52
2883 10650 7.653311 GCATCATCCCCATTGTATTAGTTTTTC 59.347 37.037 0.00 0.00 0.00 2.29
2884 10651 7.418942 GGCATCATCCCCATTGTATTAGTTTTT 60.419 37.037 0.00 0.00 0.00 1.94
2885 10652 6.041979 GGCATCATCCCCATTGTATTAGTTTT 59.958 38.462 0.00 0.00 0.00 2.43
2886 10653 5.539955 GGCATCATCCCCATTGTATTAGTTT 59.460 40.000 0.00 0.00 0.00 2.66
2887 10654 5.079643 GGCATCATCCCCATTGTATTAGTT 58.920 41.667 0.00 0.00 0.00 2.24
2888 10655 4.106179 TGGCATCATCCCCATTGTATTAGT 59.894 41.667 0.00 0.00 0.00 2.24
2889 10656 4.665451 TGGCATCATCCCCATTGTATTAG 58.335 43.478 0.00 0.00 0.00 1.73
2890 10657 4.738381 TGGCATCATCCCCATTGTATTA 57.262 40.909 0.00 0.00 0.00 0.98
2891 10658 3.616343 TGGCATCATCCCCATTGTATT 57.384 42.857 0.00 0.00 0.00 1.89
2892 10659 3.616343 TTGGCATCATCCCCATTGTAT 57.384 42.857 0.00 0.00 0.00 2.29
2893 10660 3.395054 TTTGGCATCATCCCCATTGTA 57.605 42.857 0.00 0.00 0.00 2.41
2894 10661 2.250921 TTTGGCATCATCCCCATTGT 57.749 45.000 0.00 0.00 0.00 2.71
2895 10662 4.959560 TTATTTGGCATCATCCCCATTG 57.040 40.909 0.00 0.00 0.00 2.82
2896 10663 7.630005 TTATTTATTTGGCATCATCCCCATT 57.370 32.000 0.00 0.00 0.00 3.16
2897 10664 7.458488 TCATTATTTATTTGGCATCATCCCCAT 59.542 33.333 0.00 0.00 0.00 4.00
2898 10665 6.786461 TCATTATTTATTTGGCATCATCCCCA 59.214 34.615 0.00 0.00 0.00 4.96
2899 10666 7.038799 AGTCATTATTTATTTGGCATCATCCCC 60.039 37.037 0.00 0.00 0.00 4.81
2900 10667 7.899973 AGTCATTATTTATTTGGCATCATCCC 58.100 34.615 0.00 0.00 0.00 3.85
2901 10668 9.415544 GAAGTCATTATTTATTTGGCATCATCC 57.584 33.333 0.00 0.00 0.00 3.51
2907 10674 9.859427 CTGAAAGAAGTCATTATTTATTTGGCA 57.141 29.630 0.00 0.00 34.07 4.92
2908 10675 8.811378 GCTGAAAGAAGTCATTATTTATTTGGC 58.189 33.333 0.00 0.00 34.07 4.52
2915 10682 8.632679 TGAAACAGCTGAAAGAAGTCATTATTT 58.367 29.630 23.35 4.73 34.07 1.40
2916 10683 8.169977 TGAAACAGCTGAAAGAAGTCATTATT 57.830 30.769 23.35 0.00 34.07 1.40
2917 10684 7.750229 TGAAACAGCTGAAAGAAGTCATTAT 57.250 32.000 23.35 0.00 34.07 1.28
2918 10685 7.445096 TCATGAAACAGCTGAAAGAAGTCATTA 59.555 33.333 23.35 6.72 34.07 1.90
2919 10686 6.263842 TCATGAAACAGCTGAAAGAAGTCATT 59.736 34.615 23.35 0.00 34.07 2.57
2920 10687 5.766670 TCATGAAACAGCTGAAAGAAGTCAT 59.233 36.000 23.35 13.68 34.07 3.06
2921 10688 5.125356 TCATGAAACAGCTGAAAGAAGTCA 58.875 37.500 23.35 12.08 34.07 3.41
2922 10689 5.679734 TCATGAAACAGCTGAAAGAAGTC 57.320 39.130 23.35 6.86 34.07 3.01
2923 10690 6.002704 AGATCATGAAACAGCTGAAAGAAGT 58.997 36.000 23.35 0.00 34.07 3.01
2924 10691 6.497785 AGATCATGAAACAGCTGAAAGAAG 57.502 37.500 23.35 6.16 34.07 2.85
2925 10692 9.671279 TTATAGATCATGAAACAGCTGAAAGAA 57.329 29.630 23.35 1.79 34.07 2.52
2926 10693 9.322773 CTTATAGATCATGAAACAGCTGAAAGA 57.677 33.333 23.35 9.40 34.07 2.52
2927 10694 8.068977 GCTTATAGATCATGAAACAGCTGAAAG 58.931 37.037 23.35 3.93 0.00 2.62
2928 10695 7.772292 AGCTTATAGATCATGAAACAGCTGAAA 59.228 33.333 23.35 2.58 33.83 2.69
2929 10696 7.278135 AGCTTATAGATCATGAAACAGCTGAA 58.722 34.615 23.35 2.98 33.83 3.02
2930 10697 6.824553 AGCTTATAGATCATGAAACAGCTGA 58.175 36.000 23.35 0.00 33.83 4.26
2931 10698 6.889494 CAGCTTATAGATCATGAAACAGCTG 58.111 40.000 13.48 13.48 44.09 4.24
2932 10699 6.824553 TCAGCTTATAGATCATGAAACAGCT 58.175 36.000 0.00 4.53 35.45 4.24
2933 10700 7.488187 TTCAGCTTATAGATCATGAAACAGC 57.512 36.000 0.00 2.15 0.00 4.40
2934 10701 9.107177 ACTTTCAGCTTATAGATCATGAAACAG 57.893 33.333 0.00 0.00 0.00 3.16
2972 10739 9.101655 GCTGATGTTTGAAATAATAAAATGGCT 57.898 29.630 0.00 0.00 0.00 4.75
2973 10740 8.337532 GGCTGATGTTTGAAATAATAAAATGGC 58.662 33.333 0.00 0.00 0.00 4.40
2974 10741 9.381033 TGGCTGATGTTTGAAATAATAAAATGG 57.619 29.630 0.00 0.00 0.00 3.16
2976 10743 9.941325 TGTGGCTGATGTTTGAAATAATAAAAT 57.059 25.926 0.00 0.00 0.00 1.82
2977 10744 9.941325 ATGTGGCTGATGTTTGAAATAATAAAA 57.059 25.926 0.00 0.00 0.00 1.52
2978 10745 9.585099 GATGTGGCTGATGTTTGAAATAATAAA 57.415 29.630 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.