Multiple sequence alignment - TraesCS3A01G016800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G016800 chr3A 100.000 5387 0 0 1 5387 10886595 10881209 0.000000e+00 9949.0
1 TraesCS3A01G016800 chr3A 91.926 3951 281 22 878 4806 10689859 10685925 0.000000e+00 5494.0
2 TraesCS3A01G016800 chr3A 93.989 183 11 0 5073 5255 10685830 10685648 1.480000e-70 278.0
3 TraesCS3A01G016800 chr3D 91.236 4530 334 29 880 5387 9632203 9636691 0.000000e+00 6107.0
4 TraesCS3A01G016800 chr3D 91.127 3629 293 16 814 4425 4960569 4956953 0.000000e+00 4891.0
5 TraesCS3A01G016800 chr3D 90.867 427 23 7 814 1233 4999698 4999281 4.710000e-155 558.0
6 TraesCS3A01G016800 chr3D 94.000 100 6 0 613 712 4961446 4961347 9.350000e-33 152.0
7 TraesCS3A01G016800 chr3D 94.000 100 6 0 613 712 5000555 5000456 9.350000e-33 152.0
8 TraesCS3A01G016800 chr3D 82.171 129 16 3 413 541 9630942 9631063 2.650000e-18 104.0
9 TraesCS3A01G016800 chr3D 89.157 83 7 1 278 358 4961665 4961583 9.550000e-18 102.0
10 TraesCS3A01G016800 chr3D 89.157 83 7 1 278 358 5000774 5000692 9.550000e-18 102.0
11 TraesCS3A01G016800 chr3B 90.250 4523 361 21 878 5387 13813957 13818412 0.000000e+00 5836.0
12 TraesCS3A01G016800 chrUn 89.246 4017 369 34 867 4861 35293982 35297957 0.000000e+00 4966.0
13 TraesCS3A01G016800 chrUn 89.246 4017 369 34 867 4861 229343822 229347797 0.000000e+00 4966.0
14 TraesCS3A01G016800 chrUn 91.935 3360 251 9 865 4217 257888375 257885029 0.000000e+00 4686.0
15 TraesCS3A01G016800 chrUn 90.682 3370 293 12 867 4217 284403951 284400584 0.000000e+00 4464.0
16 TraesCS3A01G016800 chrUn 90.682 3370 293 12 867 4217 284410485 284407118 0.000000e+00 4464.0
17 TraesCS3A01G016800 chrUn 90.682 3370 293 12 867 4217 302994110 302990743 0.000000e+00 4464.0
18 TraesCS3A01G016800 chrUn 88.902 1739 158 11 3602 5315 285722542 285724270 0.000000e+00 2109.0
19 TraesCS3A01G016800 chrUn 92.620 664 47 2 4725 5387 208765844 208766506 0.000000e+00 953.0
20 TraesCS3A01G016800 chrUn 93.443 61 4 0 497 557 225567464 225567524 2.070000e-14 91.6
21 TraesCS3A01G016800 chrUn 93.443 61 4 0 497 557 237456906 237456846 2.070000e-14 91.6
22 TraesCS3A01G016800 chrUn 93.443 61 4 0 497 557 257668622 257668562 2.070000e-14 91.6
23 TraesCS3A01G016800 chrUn 95.238 42 2 0 13 54 257890244 257890203 3.480000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G016800 chr3A 10881209 10886595 5386 True 9949.000000 9949 100.000000 1 5387 1 chr3A.!!$R1 5386
1 TraesCS3A01G016800 chr3A 10685648 10689859 4211 True 2886.000000 5494 92.957500 878 5255 2 chr3A.!!$R2 4377
2 TraesCS3A01G016800 chr3D 9630942 9636691 5749 False 3105.500000 6107 86.703500 413 5387 2 chr3D.!!$F1 4974
3 TraesCS3A01G016800 chr3D 4956953 4961665 4712 True 1715.000000 4891 91.428000 278 4425 3 chr3D.!!$R1 4147
4 TraesCS3A01G016800 chr3D 4999281 5000774 1493 True 270.666667 558 91.341333 278 1233 3 chr3D.!!$R2 955
5 TraesCS3A01G016800 chr3B 13813957 13818412 4455 False 5836.000000 5836 90.250000 878 5387 1 chr3B.!!$F1 4509
6 TraesCS3A01G016800 chrUn 35293982 35297957 3975 False 4966.000000 4966 89.246000 867 4861 1 chrUn.!!$F1 3994
7 TraesCS3A01G016800 chrUn 229343822 229347797 3975 False 4966.000000 4966 89.246000 867 4861 1 chrUn.!!$F4 3994
8 TraesCS3A01G016800 chrUn 284400584 284410485 9901 True 4464.000000 4464 90.682000 867 4217 2 chrUn.!!$R5 3350
9 TraesCS3A01G016800 chrUn 302990743 302994110 3367 True 4464.000000 4464 90.682000 867 4217 1 chrUn.!!$R3 3350
10 TraesCS3A01G016800 chrUn 257885029 257890244 5215 True 2376.800000 4686 93.586500 13 4217 2 chrUn.!!$R4 4204
11 TraesCS3A01G016800 chrUn 285722542 285724270 1728 False 2109.000000 2109 88.902000 3602 5315 1 chrUn.!!$F5 1713
12 TraesCS3A01G016800 chrUn 208765844 208766506 662 False 953.000000 953 92.620000 4725 5387 1 chrUn.!!$F2 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 270 0.036010 CACAGGATTGGAGCCGTTCT 60.036 55.000 0.00 0.0 0.00 3.01 F
210 308 0.178992 CCTGGCAGGAACCACTGAAA 60.179 55.000 29.96 0.0 40.97 2.69 F
837 2414 0.319728 CTATGATGCAGAGGTCGGGG 59.680 60.000 0.00 0.0 0.00 5.73 F
1476 3241 0.321996 GGCTTCGTGTTCTCTCCCTT 59.678 55.000 0.00 0.0 0.00 3.95 F
2058 3830 1.204941 ACTCAGCTGGGTTTACTAGCG 59.795 52.381 15.25 0.0 42.10 4.26 F
3477 5250 0.321298 TCAAGGGTCGGCTAAGCAAC 60.321 55.000 0.00 0.0 0.00 4.17 F
4169 5943 0.310854 GTTGTTGAGGCGTTTCCAGG 59.689 55.000 0.00 0.0 37.29 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 3635 0.039618 GCCCCAAAGGAATCTCACCA 59.960 55.000 0.00 0.00 38.24 4.17 R
1875 3647 0.693049 GACAAGAGGAGAGCCCCAAA 59.307 55.000 0.00 0.00 34.66 3.28 R
2403 4175 0.107312 AAATCTGCAGCTGGCTCGAT 60.107 50.000 17.12 10.71 45.15 3.59 R
2570 4342 0.516877 CAAGCGATTTTCGTGCAGGA 59.483 50.000 4.68 4.68 42.81 3.86 R
3778 5551 0.590195 GGCTTCAAGTCACAGTGCAG 59.410 55.000 0.00 0.00 0.00 4.41 R
4352 9406 0.107897 ATTCCGTGCAACCGCTATCA 60.108 50.000 0.00 0.00 39.64 2.15 R
4989 11005 1.079197 CACCTGCTGGTCATGCGTA 60.079 57.895 13.09 0.00 46.60 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 8.517056 GGAGAAATTCCAATTTTGAATGCAATT 58.483 29.630 0.00 0.00 46.01 2.32
48 49 9.902196 GAAATTCCAATTTTGAATGCAATTTCT 57.098 25.926 7.35 0.00 38.64 2.52
59 60 3.892200 CAATTTCTTGCCGTGCCTT 57.108 47.368 0.00 0.00 0.00 4.35
60 61 1.701704 CAATTTCTTGCCGTGCCTTC 58.298 50.000 0.00 0.00 0.00 3.46
61 62 0.240945 AATTTCTTGCCGTGCCTTCG 59.759 50.000 0.00 0.00 0.00 3.79
62 63 0.605319 ATTTCTTGCCGTGCCTTCGA 60.605 50.000 0.00 0.00 0.00 3.71
64 65 0.248012 TTCTTGCCGTGCCTTCGATA 59.752 50.000 0.00 0.00 0.00 2.92
65 66 0.464036 TCTTGCCGTGCCTTCGATAT 59.536 50.000 0.00 0.00 0.00 1.63
66 67 1.134521 TCTTGCCGTGCCTTCGATATT 60.135 47.619 0.00 0.00 0.00 1.28
67 68 1.261619 CTTGCCGTGCCTTCGATATTC 59.738 52.381 0.00 0.00 0.00 1.75
68 69 0.464036 TGCCGTGCCTTCGATATTCT 59.536 50.000 0.00 0.00 0.00 2.40
69 70 1.134521 TGCCGTGCCTTCGATATTCTT 60.135 47.619 0.00 0.00 0.00 2.52
70 71 2.101750 TGCCGTGCCTTCGATATTCTTA 59.898 45.455 0.00 0.00 0.00 2.10
71 72 3.244078 TGCCGTGCCTTCGATATTCTTAT 60.244 43.478 0.00 0.00 0.00 1.73
72 73 3.746492 GCCGTGCCTTCGATATTCTTATT 59.254 43.478 0.00 0.00 0.00 1.40
73 74 4.213482 GCCGTGCCTTCGATATTCTTATTT 59.787 41.667 0.00 0.00 0.00 1.40
74 75 5.277828 GCCGTGCCTTCGATATTCTTATTTT 60.278 40.000 0.00 0.00 0.00 1.82
75 76 6.725246 CCGTGCCTTCGATATTCTTATTTTT 58.275 36.000 0.00 0.00 0.00 1.94
76 77 6.632834 CCGTGCCTTCGATATTCTTATTTTTG 59.367 38.462 0.00 0.00 0.00 2.44
77 78 6.632834 CGTGCCTTCGATATTCTTATTTTTGG 59.367 38.462 0.00 0.00 0.00 3.28
78 79 7.480810 GTGCCTTCGATATTCTTATTTTTGGT 58.519 34.615 0.00 0.00 0.00 3.67
79 80 7.644157 GTGCCTTCGATATTCTTATTTTTGGTC 59.356 37.037 0.00 0.00 0.00 4.02
80 81 6.851330 GCCTTCGATATTCTTATTTTTGGTCG 59.149 38.462 0.00 0.00 0.00 4.79
81 82 7.254658 GCCTTCGATATTCTTATTTTTGGTCGA 60.255 37.037 0.00 0.00 34.29 4.20
82 83 8.276325 CCTTCGATATTCTTATTTTTGGTCGAG 58.724 37.037 0.00 0.00 36.99 4.04
83 84 8.936070 TTCGATATTCTTATTTTTGGTCGAGA 57.064 30.769 0.00 0.00 36.99 4.04
84 85 9.542462 TTCGATATTCTTATTTTTGGTCGAGAT 57.458 29.630 0.00 0.00 36.99 2.75
85 86 9.542462 TCGATATTCTTATTTTTGGTCGAGATT 57.458 29.630 0.00 0.00 32.61 2.40
86 87 9.798885 CGATATTCTTATTTTTGGTCGAGATTC 57.201 33.333 0.00 0.00 0.00 2.52
89 90 7.979444 TTCTTATTTTTGGTCGAGATTCTGT 57.021 32.000 0.00 0.00 0.00 3.41
90 91 7.596749 TCTTATTTTTGGTCGAGATTCTGTC 57.403 36.000 0.00 0.00 0.00 3.51
91 92 6.594159 TCTTATTTTTGGTCGAGATTCTGTCC 59.406 38.462 0.00 0.00 0.00 4.02
92 93 4.351874 TTTTTGGTCGAGATTCTGTCCT 57.648 40.909 0.00 0.00 0.00 3.85
93 94 4.351874 TTTTGGTCGAGATTCTGTCCTT 57.648 40.909 0.00 0.00 0.00 3.36
94 95 5.477607 TTTTGGTCGAGATTCTGTCCTTA 57.522 39.130 0.00 0.00 0.00 2.69
95 96 5.677319 TTTGGTCGAGATTCTGTCCTTAT 57.323 39.130 0.00 0.00 0.00 1.73
115 116 8.063153 TCCTTATGTGGTCTAGTGGTAGAATAA 58.937 37.037 0.00 0.00 37.02 1.40
120 121 6.152323 TGTGGTCTAGTGGTAGAATAAGACAC 59.848 42.308 0.00 0.00 37.02 3.67
123 124 5.356470 GTCTAGTGGTAGAATAAGACACGGT 59.644 44.000 0.00 0.00 37.02 4.83
127 128 2.093869 GGTAGAATAAGACACGGTGGCA 60.094 50.000 17.70 0.00 0.00 4.92
128 129 2.386661 AGAATAAGACACGGTGGCAG 57.613 50.000 17.70 0.00 0.00 4.85
129 130 1.623811 AGAATAAGACACGGTGGCAGT 59.376 47.619 17.70 6.07 0.00 4.40
130 131 2.829720 AGAATAAGACACGGTGGCAGTA 59.170 45.455 17.70 8.29 0.00 2.74
131 132 2.667473 ATAAGACACGGTGGCAGTAC 57.333 50.000 17.70 0.00 0.00 2.73
145 243 1.204941 GCAGTACGTCCTTGGTGAGAT 59.795 52.381 0.00 0.00 0.00 2.75
147 245 3.254060 CAGTACGTCCTTGGTGAGATTG 58.746 50.000 0.00 0.00 0.00 2.67
148 246 2.897969 AGTACGTCCTTGGTGAGATTGT 59.102 45.455 0.00 0.00 0.00 2.71
149 247 4.082408 CAGTACGTCCTTGGTGAGATTGTA 60.082 45.833 0.00 0.00 0.00 2.41
151 249 2.897969 ACGTCCTTGGTGAGATTGTAGT 59.102 45.455 0.00 0.00 0.00 2.73
152 250 3.056749 ACGTCCTTGGTGAGATTGTAGTC 60.057 47.826 0.00 0.00 0.00 2.59
153 251 3.676324 CGTCCTTGGTGAGATTGTAGTCC 60.676 52.174 0.00 0.00 0.00 3.85
154 252 3.260884 GTCCTTGGTGAGATTGTAGTCCA 59.739 47.826 0.00 0.00 0.00 4.02
156 254 3.007940 CCTTGGTGAGATTGTAGTCCACA 59.992 47.826 0.00 0.00 34.51 4.17
157 255 3.961480 TGGTGAGATTGTAGTCCACAG 57.039 47.619 0.00 0.00 38.72 3.66
158 256 2.567169 TGGTGAGATTGTAGTCCACAGG 59.433 50.000 0.00 0.00 38.72 4.00
159 257 2.832129 GGTGAGATTGTAGTCCACAGGA 59.168 50.000 0.00 0.00 38.72 3.86
160 258 3.452627 GGTGAGATTGTAGTCCACAGGAT 59.547 47.826 0.00 0.00 38.72 3.24
161 259 4.080863 GGTGAGATTGTAGTCCACAGGATT 60.081 45.833 0.00 0.00 38.72 3.01
163 261 4.080919 TGAGATTGTAGTCCACAGGATTGG 60.081 45.833 0.00 0.00 38.72 3.16
164 262 4.104086 AGATTGTAGTCCACAGGATTGGA 58.896 43.478 0.00 0.00 43.83 3.53
165 263 3.981071 TTGTAGTCCACAGGATTGGAG 57.019 47.619 0.00 0.00 46.75 3.86
166 264 1.555075 TGTAGTCCACAGGATTGGAGC 59.445 52.381 0.00 0.00 46.75 4.70
167 265 1.134371 GTAGTCCACAGGATTGGAGCC 60.134 57.143 0.00 0.00 46.75 4.70
168 266 1.450312 GTCCACAGGATTGGAGCCG 60.450 63.158 0.00 0.00 46.75 5.52
169 267 1.918293 TCCACAGGATTGGAGCCGT 60.918 57.895 0.00 0.00 41.00 5.68
170 268 1.002134 CCACAGGATTGGAGCCGTT 60.002 57.895 0.00 0.00 39.24 4.44
171 269 1.026718 CCACAGGATTGGAGCCGTTC 61.027 60.000 0.00 0.00 39.24 3.95
172 270 0.036010 CACAGGATTGGAGCCGTTCT 60.036 55.000 0.00 0.00 0.00 3.01
173 271 0.693049 ACAGGATTGGAGCCGTTCTT 59.307 50.000 0.00 0.00 0.00 2.52
174 272 1.906574 ACAGGATTGGAGCCGTTCTTA 59.093 47.619 0.00 0.00 0.00 2.10
175 273 2.505819 ACAGGATTGGAGCCGTTCTTAT 59.494 45.455 0.00 0.00 0.00 1.73
176 274 3.134458 CAGGATTGGAGCCGTTCTTATC 58.866 50.000 0.00 0.00 0.00 1.75
177 275 2.104963 AGGATTGGAGCCGTTCTTATCC 59.895 50.000 0.00 0.00 36.66 2.59
178 276 2.104963 GGATTGGAGCCGTTCTTATCCT 59.895 50.000 0.00 0.00 35.08 3.24
179 277 3.433740 GGATTGGAGCCGTTCTTATCCTT 60.434 47.826 0.00 0.00 35.08 3.36
180 278 2.981859 TGGAGCCGTTCTTATCCTTC 57.018 50.000 0.00 0.00 32.79 3.46
181 279 2.467880 TGGAGCCGTTCTTATCCTTCT 58.532 47.619 0.00 0.00 32.79 2.85
182 280 3.638860 TGGAGCCGTTCTTATCCTTCTA 58.361 45.455 0.00 0.00 32.79 2.10
183 281 3.637229 TGGAGCCGTTCTTATCCTTCTAG 59.363 47.826 0.00 0.00 32.79 2.43
184 282 3.637694 GGAGCCGTTCTTATCCTTCTAGT 59.362 47.826 0.00 0.00 0.00 2.57
185 283 4.099727 GGAGCCGTTCTTATCCTTCTAGTT 59.900 45.833 0.00 0.00 0.00 2.24
186 284 5.012328 AGCCGTTCTTATCCTTCTAGTTG 57.988 43.478 0.00 0.00 0.00 3.16
187 285 3.556365 GCCGTTCTTATCCTTCTAGTTGC 59.444 47.826 0.00 0.00 0.00 4.17
188 286 3.797256 CCGTTCTTATCCTTCTAGTTGCG 59.203 47.826 0.00 0.00 0.00 4.85
189 287 3.797256 CGTTCTTATCCTTCTAGTTGCGG 59.203 47.826 0.00 0.00 0.00 5.69
190 288 4.120589 GTTCTTATCCTTCTAGTTGCGGG 58.879 47.826 0.00 0.00 0.00 6.13
191 289 2.102588 TCTTATCCTTCTAGTTGCGGGC 59.897 50.000 0.00 0.00 0.00 6.13
192 290 0.756903 TATCCTTCTAGTTGCGGGCC 59.243 55.000 0.00 0.00 0.00 5.80
193 291 0.983378 ATCCTTCTAGTTGCGGGCCT 60.983 55.000 0.84 0.00 0.00 5.19
194 292 1.450312 CCTTCTAGTTGCGGGCCTG 60.450 63.158 7.41 7.41 0.00 4.85
195 293 1.450312 CTTCTAGTTGCGGGCCTGG 60.450 63.158 15.02 1.19 0.00 4.45
196 294 3.622060 TTCTAGTTGCGGGCCTGGC 62.622 63.158 15.02 11.05 0.00 4.85
197 295 4.408821 CTAGTTGCGGGCCTGGCA 62.409 66.667 22.05 15.84 38.93 4.92
198 296 4.408821 TAGTTGCGGGCCTGGCAG 62.409 66.667 22.05 14.75 42.12 4.85
206 304 3.971702 GGCCTGGCAGGAACCACT 61.972 66.667 37.07 0.00 37.67 4.00
207 305 2.674380 GCCTGGCAGGAACCACTG 60.674 66.667 37.07 8.29 37.67 3.66
208 306 3.160585 CCTGGCAGGAACCACTGA 58.839 61.111 29.96 0.00 40.97 3.41
209 307 1.455849 CCTGGCAGGAACCACTGAA 59.544 57.895 29.96 0.00 40.97 3.02
210 308 0.178992 CCTGGCAGGAACCACTGAAA 60.179 55.000 29.96 0.00 40.97 2.69
211 309 0.954452 CTGGCAGGAACCACTGAAAC 59.046 55.000 6.61 0.00 40.97 2.78
212 310 0.550914 TGGCAGGAACCACTGAAACT 59.449 50.000 0.00 0.00 40.97 2.66
213 311 1.239347 GGCAGGAACCACTGAAACTC 58.761 55.000 0.00 0.00 40.97 3.01
214 312 1.202818 GGCAGGAACCACTGAAACTCT 60.203 52.381 0.00 0.00 40.97 3.24
215 313 2.038557 GGCAGGAACCACTGAAACTCTA 59.961 50.000 0.00 0.00 40.97 2.43
216 314 3.307762 GGCAGGAACCACTGAAACTCTAT 60.308 47.826 0.00 0.00 40.97 1.98
217 315 3.935828 GCAGGAACCACTGAAACTCTATC 59.064 47.826 0.00 0.00 40.97 2.08
218 316 4.323104 GCAGGAACCACTGAAACTCTATCT 60.323 45.833 0.00 0.00 40.97 1.98
219 317 5.799213 CAGGAACCACTGAAACTCTATCTT 58.201 41.667 0.00 0.00 40.97 2.40
220 318 5.641209 CAGGAACCACTGAAACTCTATCTTG 59.359 44.000 0.00 0.00 40.97 3.02
221 319 5.308237 AGGAACCACTGAAACTCTATCTTGT 59.692 40.000 0.00 0.00 0.00 3.16
222 320 5.998363 GGAACCACTGAAACTCTATCTTGTT 59.002 40.000 0.00 0.00 0.00 2.83
223 321 6.147985 GGAACCACTGAAACTCTATCTTGTTC 59.852 42.308 0.00 0.00 0.00 3.18
224 322 6.426646 ACCACTGAAACTCTATCTTGTTCT 57.573 37.500 0.00 0.00 0.00 3.01
225 323 7.540474 ACCACTGAAACTCTATCTTGTTCTA 57.460 36.000 0.00 0.00 0.00 2.10
226 324 7.379750 ACCACTGAAACTCTATCTTGTTCTAC 58.620 38.462 0.00 0.00 0.00 2.59
227 325 6.528423 CCACTGAAACTCTATCTTGTTCTACG 59.472 42.308 0.00 0.00 0.00 3.51
228 326 6.528423 CACTGAAACTCTATCTTGTTCTACGG 59.472 42.308 0.00 0.00 0.00 4.02
229 327 6.208994 ACTGAAACTCTATCTTGTTCTACGGT 59.791 38.462 0.00 0.00 0.00 4.83
230 328 6.618811 TGAAACTCTATCTTGTTCTACGGTC 58.381 40.000 0.00 0.00 0.00 4.79
231 329 6.433404 TGAAACTCTATCTTGTTCTACGGTCT 59.567 38.462 0.00 0.00 0.00 3.85
232 330 7.609146 TGAAACTCTATCTTGTTCTACGGTCTA 59.391 37.037 0.00 0.00 0.00 2.59
233 331 7.556733 AACTCTATCTTGTTCTACGGTCTAG 57.443 40.000 0.00 0.00 0.00 2.43
234 332 6.887013 ACTCTATCTTGTTCTACGGTCTAGA 58.113 40.000 0.00 0.00 0.00 2.43
235 333 7.337167 ACTCTATCTTGTTCTACGGTCTAGAA 58.663 38.462 0.00 0.00 0.00 2.10
236 334 7.828223 ACTCTATCTTGTTCTACGGTCTAGAAA 59.172 37.037 0.00 0.00 35.58 2.52
237 335 8.211116 TCTATCTTGTTCTACGGTCTAGAAAG 57.789 38.462 0.00 0.00 35.58 2.62
238 336 5.056894 TCTTGTTCTACGGTCTAGAAAGC 57.943 43.478 0.00 0.00 35.58 3.51
241 339 3.442977 TGTTCTACGGTCTAGAAAGCTCC 59.557 47.826 0.00 0.00 35.58 4.70
251 349 5.335976 GGTCTAGAAAGCTCCATGGTTTTTG 60.336 44.000 12.58 6.54 45.15 2.44
256 354 3.751479 AGCTCCATGGTTTTTGGAAAC 57.249 42.857 12.58 0.00 42.56 2.78
257 355 2.035832 AGCTCCATGGTTTTTGGAAACG 59.964 45.455 12.58 0.00 44.83 3.60
258 356 2.035321 GCTCCATGGTTTTTGGAAACGA 59.965 45.455 12.58 0.00 44.83 3.85
260 358 4.799255 GCTCCATGGTTTTTGGAAACGAAT 60.799 41.667 12.58 0.00 44.83 3.34
261 359 4.626042 TCCATGGTTTTTGGAAACGAATG 58.374 39.130 12.58 8.29 44.83 2.67
262 360 3.186205 CCATGGTTTTTGGAAACGAATGC 59.814 43.478 2.57 0.00 44.83 3.56
263 361 2.827652 TGGTTTTTGGAAACGAATGCC 58.172 42.857 0.00 0.00 44.83 4.40
266 364 2.697431 TTTTGGAAACGAATGCCGAG 57.303 45.000 0.00 0.00 41.76 4.63
267 365 1.600023 TTTGGAAACGAATGCCGAGT 58.400 45.000 0.00 0.00 41.76 4.18
268 366 2.459060 TTGGAAACGAATGCCGAGTA 57.541 45.000 0.00 0.00 41.76 2.59
270 368 2.276201 TGGAAACGAATGCCGAGTATG 58.724 47.619 0.00 0.00 41.76 2.39
271 369 1.597663 GGAAACGAATGCCGAGTATGG 59.402 52.381 0.00 0.00 41.76 2.74
272 370 2.277084 GAAACGAATGCCGAGTATGGT 58.723 47.619 0.00 0.00 41.76 3.55
284 384 5.221382 TGCCGAGTATGGTTTAGACTATTCC 60.221 44.000 0.00 0.00 29.22 3.01
290 390 4.216411 TGGTTTAGACTATTCCTGCCAC 57.784 45.455 5.46 0.00 0.00 5.01
292 392 5.027460 TGGTTTAGACTATTCCTGCCACTA 58.973 41.667 5.46 0.00 0.00 2.74
293 393 5.486063 TGGTTTAGACTATTCCTGCCACTAA 59.514 40.000 0.00 0.00 0.00 2.24
330 431 1.710013 ATGCAAGACAAGTACCGACG 58.290 50.000 0.00 0.00 0.00 5.12
354 457 8.985805 ACGACTCTTTAAAACGAAGTATGAAAT 58.014 29.630 0.00 0.00 45.00 2.17
386 498 5.023533 TGTAATAGCTTGAAGGGTAGCAG 57.976 43.478 0.00 0.00 39.85 4.24
404 516 2.983229 CAGAACTCCTGCTGCTATGTT 58.017 47.619 0.00 1.08 35.89 2.71
405 517 2.935201 CAGAACTCCTGCTGCTATGTTC 59.065 50.000 15.05 15.05 35.89 3.18
406 518 2.568956 AGAACTCCTGCTGCTATGTTCA 59.431 45.455 20.56 0.00 37.03 3.18
408 520 2.915349 ACTCCTGCTGCTATGTTCATG 58.085 47.619 0.00 0.00 0.00 3.07
409 521 1.602851 CTCCTGCTGCTATGTTCATGC 59.397 52.381 0.00 0.00 0.00 4.06
410 522 0.666913 CCTGCTGCTATGTTCATGCC 59.333 55.000 0.00 0.00 0.00 4.40
411 523 1.385528 CTGCTGCTATGTTCATGCCA 58.614 50.000 0.00 0.00 0.00 4.92
418 598 5.048224 GCTGCTATGTTCATGCCATCTTATT 60.048 40.000 1.52 0.00 0.00 1.40
433 613 8.644216 TGCCATCTTATTCATGATATTTTGCTT 58.356 29.630 0.00 0.00 0.00 3.91
471 654 5.575957 GCTGATGTGTGTTTTCTGATATGG 58.424 41.667 0.00 0.00 0.00 2.74
477 660 7.340122 TGTGTGTTTTCTGATATGGTCAAAA 57.660 32.000 0.00 0.00 36.14 2.44
490 673 2.828520 TGGTCAAAACTTTTGTGCTGGA 59.171 40.909 12.88 0.00 0.00 3.86
492 675 3.616821 GGTCAAAACTTTTGTGCTGGAAC 59.383 43.478 12.88 3.59 0.00 3.62
577 769 5.940470 CCTACAAATTCCTGAAGCTAACTGT 59.060 40.000 0.00 0.00 0.00 3.55
578 770 6.431234 CCTACAAATTCCTGAAGCTAACTGTT 59.569 38.462 0.00 0.00 0.00 3.16
579 771 6.076981 ACAAATTCCTGAAGCTAACTGTTG 57.923 37.500 2.69 0.00 0.00 3.33
580 772 5.594317 ACAAATTCCTGAAGCTAACTGTTGT 59.406 36.000 2.69 0.00 0.00 3.32
581 773 6.096846 ACAAATTCCTGAAGCTAACTGTTGTT 59.903 34.615 2.69 0.00 39.98 2.83
582 774 6.715347 AATTCCTGAAGCTAACTGTTGTTT 57.285 33.333 2.69 0.00 37.59 2.83
583 775 6.715347 ATTCCTGAAGCTAACTGTTGTTTT 57.285 33.333 2.69 0.00 37.59 2.43
584 776 5.751243 TCCTGAAGCTAACTGTTGTTTTC 57.249 39.130 2.69 4.84 37.59 2.29
585 777 5.437060 TCCTGAAGCTAACTGTTGTTTTCT 58.563 37.500 2.69 0.00 37.59 2.52
586 778 5.527582 TCCTGAAGCTAACTGTTGTTTTCTC 59.472 40.000 2.69 0.00 37.59 2.87
587 779 5.529060 CCTGAAGCTAACTGTTGTTTTCTCT 59.471 40.000 2.69 0.00 37.59 3.10
588 780 6.293135 CCTGAAGCTAACTGTTGTTTTCTCTC 60.293 42.308 2.69 0.00 37.59 3.20
589 781 6.349300 TGAAGCTAACTGTTGTTTTCTCTCT 58.651 36.000 2.69 0.00 37.59 3.10
590 782 6.480320 TGAAGCTAACTGTTGTTTTCTCTCTC 59.520 38.462 2.69 0.00 37.59 3.20
591 783 6.168270 AGCTAACTGTTGTTTTCTCTCTCT 57.832 37.500 2.69 0.00 37.59 3.10
592 784 6.220201 AGCTAACTGTTGTTTTCTCTCTCTC 58.780 40.000 2.69 0.00 37.59 3.20
593 785 6.041523 AGCTAACTGTTGTTTTCTCTCTCTCT 59.958 38.462 2.69 0.00 37.59 3.10
594 786 6.364976 GCTAACTGTTGTTTTCTCTCTCTCTC 59.635 42.308 2.69 0.00 37.59 3.20
595 787 6.478512 AACTGTTGTTTTCTCTCTCTCTCT 57.521 37.500 0.00 0.00 31.37 3.10
596 788 6.084326 ACTGTTGTTTTCTCTCTCTCTCTC 57.916 41.667 0.00 0.00 0.00 3.20
597 789 5.596361 ACTGTTGTTTTCTCTCTCTCTCTCA 59.404 40.000 0.00 0.00 0.00 3.27
598 790 6.097554 ACTGTTGTTTTCTCTCTCTCTCTCAA 59.902 38.462 0.00 0.00 0.00 3.02
599 791 6.276847 TGTTGTTTTCTCTCTCTCTCTCAAC 58.723 40.000 0.00 0.00 34.19 3.18
600 792 6.127338 TGTTGTTTTCTCTCTCTCTCTCAACA 60.127 38.462 0.00 0.00 38.90 3.33
601 793 6.083098 TGTTTTCTCTCTCTCTCTCAACAG 57.917 41.667 0.00 0.00 0.00 3.16
602 794 5.010516 TGTTTTCTCTCTCTCTCTCAACAGG 59.989 44.000 0.00 0.00 0.00 4.00
603 795 2.722094 TCTCTCTCTCTCTCAACAGGC 58.278 52.381 0.00 0.00 0.00 4.85
604 796 2.308570 TCTCTCTCTCTCTCAACAGGCT 59.691 50.000 0.00 0.00 0.00 4.58
605 797 3.091545 CTCTCTCTCTCTCAACAGGCTT 58.908 50.000 0.00 0.00 0.00 4.35
606 798 3.505386 TCTCTCTCTCTCAACAGGCTTT 58.495 45.455 0.00 0.00 0.00 3.51
607 799 3.509575 TCTCTCTCTCTCAACAGGCTTTC 59.490 47.826 0.00 0.00 0.00 2.62
608 800 2.230025 TCTCTCTCTCAACAGGCTTTCG 59.770 50.000 0.00 0.00 0.00 3.46
609 801 1.074752 CTCTCTCAACAGGCTTTCGC 58.925 55.000 0.00 0.00 0.00 4.70
619 811 2.256461 GCTTTCGCCCAACTGCTG 59.744 61.111 0.00 0.00 0.00 4.41
633 825 5.221224 CCCAACTGCTGTTTTCTTATGAACA 60.221 40.000 6.20 0.00 33.52 3.18
712 904 6.043938 AGTTTCAGGTACAAGTTGGGAAGATA 59.956 38.462 7.96 0.00 0.00 1.98
713 905 6.636454 TTCAGGTACAAGTTGGGAAGATAT 57.364 37.500 7.96 0.00 0.00 1.63
715 907 7.743116 TCAGGTACAAGTTGGGAAGATATAA 57.257 36.000 7.96 0.00 0.00 0.98
716 908 7.792032 TCAGGTACAAGTTGGGAAGATATAAG 58.208 38.462 7.96 0.00 0.00 1.73
722 926 8.336801 ACAAGTTGGGAAGATATAAGAAACAC 57.663 34.615 7.96 0.00 0.00 3.32
725 929 9.533831 AAGTTGGGAAGATATAAGAAACACATT 57.466 29.630 0.00 0.00 0.00 2.71
741 945 8.637986 AGAAACACATTTATTTAAACCTGCTGA 58.362 29.630 0.00 0.00 0.00 4.26
743 947 9.606631 AAACACATTTATTTAAACCTGCTGAAA 57.393 25.926 0.00 0.00 0.00 2.69
744 948 8.587952 ACACATTTATTTAAACCTGCTGAAAC 57.412 30.769 0.00 0.00 0.00 2.78
745 949 8.200792 ACACATTTATTTAAACCTGCTGAAACA 58.799 29.630 0.00 0.00 0.00 2.83
750 954 9.606631 TTTATTTAAACCTGCTGAAACACATTT 57.393 25.926 0.00 0.00 0.00 2.32
760 964 7.872483 CCTGCTGAAACACATTTATTTAAACCT 59.128 33.333 0.00 0.00 0.00 3.50
761 965 8.586570 TGCTGAAACACATTTATTTAAACCTG 57.413 30.769 0.00 0.00 0.00 4.00
763 967 7.384932 GCTGAAACACATTTATTTAAACCTGCT 59.615 33.333 0.00 0.00 0.00 4.24
805 2382 2.031012 TCTGTCTGGCACCGCTTG 59.969 61.111 0.00 0.00 0.00 4.01
806 2383 2.281070 CTGTCTGGCACCGCTTGT 60.281 61.111 0.00 0.00 0.00 3.16
808 2385 3.357079 GTCTGGCACCGCTTGTGG 61.357 66.667 5.53 0.00 45.55 4.17
809 2386 4.641645 TCTGGCACCGCTTGTGGG 62.642 66.667 5.16 0.00 45.55 4.61
817 2394 1.378514 CCGCTTGTGGGGTAGCATT 60.379 57.895 0.00 0.00 40.91 3.56
818 2395 1.376609 CCGCTTGTGGGGTAGCATTC 61.377 60.000 0.00 0.00 40.91 2.67
819 2396 0.392998 CGCTTGTGGGGTAGCATTCT 60.393 55.000 0.00 0.00 37.23 2.40
821 2398 2.485479 CGCTTGTGGGGTAGCATTCTAT 60.485 50.000 0.00 0.00 37.23 1.98
823 2400 3.433598 GCTTGTGGGGTAGCATTCTATGA 60.434 47.826 0.00 0.00 37.35 2.15
825 2402 4.356405 TGTGGGGTAGCATTCTATGATG 57.644 45.455 0.00 0.00 0.00 3.07
836 2413 1.332195 TCTATGATGCAGAGGTCGGG 58.668 55.000 0.00 0.00 0.00 5.14
837 2414 0.319728 CTATGATGCAGAGGTCGGGG 59.680 60.000 0.00 0.00 0.00 5.73
838 2415 0.398522 TATGATGCAGAGGTCGGGGT 60.399 55.000 0.00 0.00 0.00 4.95
839 2416 0.398522 ATGATGCAGAGGTCGGGGTA 60.399 55.000 0.00 0.00 0.00 3.69
882 2622 2.426522 TGAAGGTCTTTGATGCCGAAG 58.573 47.619 0.00 0.00 35.53 3.79
945 2689 4.159693 TCCCACCATATAAAGATCGATCGG 59.840 45.833 19.33 14.47 0.00 4.18
959 2714 3.687125 TCGATCGGTAAGATATCAGCCT 58.313 45.455 16.41 0.00 40.26 4.58
1152 2917 2.551938 GGCTTTCAAAGGACAGCTCTCT 60.552 50.000 0.00 0.00 44.45 3.10
1334 3099 2.894126 TCCTCTCTGTTCTCAACCTCAC 59.106 50.000 0.00 0.00 0.00 3.51
1343 3108 5.063204 TGTTCTCAACCTCACCAATACAAG 58.937 41.667 0.00 0.00 0.00 3.16
1349 3114 5.013079 TCAACCTCACCAATACAAGTCTCAT 59.987 40.000 0.00 0.00 0.00 2.90
1470 3235 1.795286 CTCACAAGGCTTCGTGTTCTC 59.205 52.381 21.09 0.00 34.66 2.87
1476 3241 0.321996 GGCTTCGTGTTCTCTCCCTT 59.678 55.000 0.00 0.00 0.00 3.95
1506 3278 4.712051 CCATCTATCTGGTTCAATCCCA 57.288 45.455 0.00 0.00 0.00 4.37
1551 3323 2.092429 TCTTGGCCACTTCAGTGTCTTT 60.092 45.455 3.88 0.00 44.21 2.52
1563 3335 8.311836 CACTTCAGTGTCTTTAGGAATTACCTA 58.688 37.037 0.00 0.00 43.08 3.08
1769 3541 5.573337 AGATTAACTGAAATCTGGCTTGC 57.427 39.130 8.50 0.00 43.09 4.01
1772 3544 3.587797 AACTGAAATCTGGCTTGCATG 57.412 42.857 0.00 0.00 0.00 4.06
1778 3550 1.471119 ATCTGGCTTGCATGGAACTG 58.529 50.000 0.00 0.00 0.00 3.16
1863 3635 2.026822 CCTGGGTAGCAACAGATTCACT 60.027 50.000 0.00 0.00 36.86 3.41
1875 3647 4.288105 AACAGATTCACTGGTGAGATTCCT 59.712 41.667 3.62 0.00 45.73 3.36
2000 3772 1.818674 CCTTTCCTTGGGTTGGAATCG 59.181 52.381 0.00 0.00 42.41 3.34
2006 3778 1.531739 TTGGGTTGGAATCGCCTTGC 61.532 55.000 0.00 0.00 37.63 4.01
2014 3786 1.372087 GAATCGCCTTGCTGGTCCAG 61.372 60.000 15.15 15.15 38.35 3.86
2046 3818 2.289320 ACTTAGCAACCTCACTCAGCTG 60.289 50.000 7.63 7.63 36.80 4.24
2058 3830 1.204941 ACTCAGCTGGGTTTACTAGCG 59.795 52.381 15.25 0.00 42.10 4.26
2115 3887 3.490348 AGAATTTGGACAGTTGGACCAG 58.510 45.455 0.00 0.00 35.08 4.00
2151 3923 6.438741 TGGATCTCTCAGACAATCAACTAGTT 59.561 38.462 1.12 1.12 0.00 2.24
2155 3927 6.438741 TCTCTCAGACAATCAACTAGTTGGAT 59.561 38.462 30.35 20.45 40.78 3.41
2220 3992 4.771903 TGCGCTTACCCAGAAATATGTTA 58.228 39.130 9.73 0.00 0.00 2.41
2233 4005 9.784531 CCAGAAATATGTTACTTGGATCAGTAT 57.215 33.333 0.00 0.00 0.00 2.12
2313 4085 2.507471 AGTGGGGGATCTTAGCTTCTTG 59.493 50.000 0.00 0.00 0.00 3.02
2438 4210 3.309138 CAGATTTTCGGTGCATCTGAGAG 59.691 47.826 5.47 0.00 44.64 3.20
2532 4304 3.797039 TCAGTTGGATAGCAAGATTCCG 58.203 45.455 0.00 0.00 31.90 4.30
2570 4342 2.777832 GAGAATCTCCAGGTGCTTGT 57.222 50.000 0.00 0.00 0.00 3.16
2638 4410 7.452562 TGCAATGCTCAAGAATATAGGTCATA 58.547 34.615 6.82 0.00 0.00 2.15
2730 4502 4.972591 GCATTGTCTGCCAACCAC 57.027 55.556 0.00 0.00 45.66 4.16
2775 4547 9.342308 TCAAGTTTATTTCATCTTGACAGTCTT 57.658 29.630 1.31 0.00 40.46 3.01
2780 4552 3.857549 TCATCTTGACAGTCTTCTCCG 57.142 47.619 1.31 0.00 0.00 4.63
2821 4593 1.702401 TCTTGACTGGCACATTACCCA 59.298 47.619 0.00 0.00 38.20 4.51
2925 4697 2.038557 ACAACTCCAAACGACAGCCTAT 59.961 45.455 0.00 0.00 0.00 2.57
2950 4722 6.770303 TCTGAACCTGTCACACAATTCATTTA 59.230 34.615 4.35 0.00 34.65 1.40
3284 5057 7.792374 TCATATCAATTGGACTTGTAGCTTC 57.208 36.000 5.42 0.00 0.00 3.86
3367 5140 0.998928 TATGGTTGACATGCCCACCT 59.001 50.000 3.92 0.00 40.82 4.00
3465 5238 6.121776 AGTTTTGGAAAAGTTTTCAAGGGT 57.878 33.333 25.59 6.60 37.01 4.34
3467 5240 4.379339 TTGGAAAAGTTTTCAAGGGTCG 57.621 40.909 25.59 0.00 30.94 4.79
3477 5250 0.321298 TCAAGGGTCGGCTAAGCAAC 60.321 55.000 0.00 0.00 0.00 4.17
3480 5253 3.497031 GGTCGGCTAAGCAACGGC 61.497 66.667 0.00 0.00 41.61 5.68
3501 5274 5.229423 GGCTTGATTGTTGCAATCAAAGTA 58.771 37.500 26.77 13.13 43.55 2.24
3514 5287 5.220739 GCAATCAAAGTACTAGACATGCAGG 60.221 44.000 20.96 0.00 31.52 4.85
3630 5403 3.769300 ACTTGGAATTTAGGGCATTGGTC 59.231 43.478 0.00 0.00 0.00 4.02
3705 5478 3.524095 ACAACACCATTGGGATTCAGA 57.476 42.857 7.78 0.00 38.05 3.27
3707 5480 3.181429 ACAACACCATTGGGATTCAGAGT 60.181 43.478 7.78 0.00 38.05 3.24
3753 5526 3.449377 TGTCGTTGGCAATGGAGTATCTA 59.551 43.478 18.77 0.00 33.73 1.98
3778 5551 3.808583 GAACACTACGAGGTGGTCC 57.191 57.895 15.70 3.21 45.21 4.46
3829 5602 3.676291 TGTTCGATGAGGACATGACAA 57.324 42.857 0.00 0.00 36.82 3.18
3840 5613 3.388059 CATGACAACACATGTGGCG 57.612 52.632 28.64 20.56 44.12 5.69
4030 5804 4.530875 CTTGATTTCAGAGTATGGGGCTT 58.469 43.478 0.00 0.00 0.00 4.35
4096 5870 4.753610 TCATGCTCTTTGAAGTCTTCACTG 59.246 41.667 14.98 10.54 39.87 3.66
4167 5941 1.104577 GGGTTGTTGAGGCGTTTCCA 61.105 55.000 0.00 0.00 37.29 3.53
4169 5943 0.310854 GTTGTTGAGGCGTTTCCAGG 59.689 55.000 0.00 0.00 37.29 4.45
4194 5968 1.531149 CTTGTCCGTGTTGTGGATGAC 59.469 52.381 0.00 0.00 37.93 3.06
4217 5991 5.308759 ACCAGCTACTACAAGGGTCTTTTAA 59.691 40.000 0.00 0.00 0.00 1.52
4244 6018 1.891150 CATGGAAGGCTTTCTTGTGCT 59.109 47.619 12.17 0.00 35.50 4.40
4352 9406 6.435164 AGATCCAAGTGGCCTACAATAAATT 58.565 36.000 3.32 0.00 34.44 1.82
4361 9415 4.760204 GGCCTACAATAAATTGATAGCGGT 59.240 41.667 9.60 0.00 40.14 5.68
4362 9416 5.240844 GGCCTACAATAAATTGATAGCGGTT 59.759 40.000 9.60 0.00 40.14 4.44
4451 9737 3.003171 GCGAAAACCATGCAACCAAATTT 59.997 39.130 0.00 0.00 0.00 1.82
4627 10598 5.742562 ATAACCCCTGGATGTAATTTCCA 57.257 39.130 0.00 0.00 40.96 3.53
4637 10608 6.186957 TGGATGTAATTTCCAGCTTGTATGT 58.813 36.000 0.00 0.00 38.35 2.29
4646 10617 7.987750 TTTCCAGCTTGTATGTTATTACACA 57.012 32.000 0.00 0.00 37.03 3.72
4679 10650 6.568601 CCGCAATATAAATACATTATACGCGC 59.431 38.462 5.73 0.00 46.99 6.86
4689 10660 0.747852 TTATACGCGCCATCCTGTGA 59.252 50.000 5.73 0.00 0.00 3.58
4815 10786 4.489771 CACCGGGGCTGCCCTAAG 62.490 72.222 34.99 25.04 44.66 2.18
4841 10826 2.171003 CACCCTTGGAGAAATTGACCC 58.829 52.381 0.00 0.00 0.00 4.46
4893 10909 4.410400 GCCACTAACCGGCCTGCT 62.410 66.667 0.00 0.00 44.22 4.24
4894 10910 2.125106 CCACTAACCGGCCTGCTC 60.125 66.667 0.00 0.00 0.00 4.26
4895 10911 2.509336 CACTAACCGGCCTGCTCG 60.509 66.667 0.00 0.00 0.00 5.03
4896 10912 2.678934 ACTAACCGGCCTGCTCGA 60.679 61.111 0.00 0.00 0.00 4.04
4897 10913 2.280552 ACTAACCGGCCTGCTCGAA 61.281 57.895 0.00 0.00 0.00 3.71
4898 10914 1.519455 CTAACCGGCCTGCTCGAAG 60.519 63.158 0.00 0.00 0.00 3.79
4899 10915 2.907897 CTAACCGGCCTGCTCGAAGG 62.908 65.000 0.00 0.00 40.63 3.46
4923 10939 4.514577 CGCCGAGTCGCCCAAGAT 62.515 66.667 7.12 0.00 0.00 2.40
4978 10994 1.198759 GGCACCCAACCTCCTCTACA 61.199 60.000 0.00 0.00 0.00 2.74
4989 11005 1.824230 CTCCTCTACACTGCTCAGCTT 59.176 52.381 0.00 0.00 0.00 3.74
5305 11891 5.640732 CGGTGTTTTTCTATTGGATGGAAG 58.359 41.667 0.00 0.00 31.22 3.46
5362 11948 2.824936 TGCAAACTCATTGTATGGGTGG 59.175 45.455 0.00 0.00 44.91 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.370437 ACTGTGAGTGAGGCTGCAG 59.630 57.895 10.11 10.11 34.78 4.41
1 2 3.554716 ACTGTGAGTGAGGCTGCA 58.445 55.556 0.50 0.00 0.00 4.41
45 46 0.248012 TATCGAAGGCACGGCAAGAA 59.752 50.000 0.00 0.00 0.00 2.52
48 49 1.134521 AGAATATCGAAGGCACGGCAA 60.135 47.619 0.00 0.00 0.00 4.52
54 55 7.466725 CGACCAAAAATAAGAATATCGAAGGCA 60.467 37.037 0.00 0.00 0.00 4.75
55 56 6.851330 CGACCAAAAATAAGAATATCGAAGGC 59.149 38.462 0.00 0.00 0.00 4.35
59 60 9.542462 AATCTCGACCAAAAATAAGAATATCGA 57.458 29.630 0.00 0.00 35.08 3.59
60 61 9.798885 GAATCTCGACCAAAAATAAGAATATCG 57.201 33.333 0.00 0.00 0.00 2.92
64 65 8.567285 ACAGAATCTCGACCAAAAATAAGAAT 57.433 30.769 0.00 0.00 0.00 2.40
65 66 7.119262 GGACAGAATCTCGACCAAAAATAAGAA 59.881 37.037 0.00 0.00 0.00 2.52
66 67 6.594159 GGACAGAATCTCGACCAAAAATAAGA 59.406 38.462 0.00 0.00 0.00 2.10
67 68 6.595716 AGGACAGAATCTCGACCAAAAATAAG 59.404 38.462 0.00 0.00 0.00 1.73
68 69 6.472887 AGGACAGAATCTCGACCAAAAATAA 58.527 36.000 0.00 0.00 0.00 1.40
69 70 6.049955 AGGACAGAATCTCGACCAAAAATA 57.950 37.500 0.00 0.00 0.00 1.40
70 71 4.911390 AGGACAGAATCTCGACCAAAAAT 58.089 39.130 0.00 0.00 0.00 1.82
71 72 4.351874 AGGACAGAATCTCGACCAAAAA 57.648 40.909 0.00 0.00 0.00 1.94
72 73 4.351874 AAGGACAGAATCTCGACCAAAA 57.648 40.909 0.00 0.00 0.00 2.44
73 74 5.046591 ACATAAGGACAGAATCTCGACCAAA 60.047 40.000 0.00 0.00 0.00 3.28
74 75 4.466370 ACATAAGGACAGAATCTCGACCAA 59.534 41.667 0.00 0.00 0.00 3.67
75 76 4.023980 ACATAAGGACAGAATCTCGACCA 58.976 43.478 0.00 0.00 0.00 4.02
76 77 4.363999 CACATAAGGACAGAATCTCGACC 58.636 47.826 0.00 0.00 0.00 4.79
77 78 4.142138 ACCACATAAGGACAGAATCTCGAC 60.142 45.833 0.00 0.00 0.00 4.20
78 79 4.023980 ACCACATAAGGACAGAATCTCGA 58.976 43.478 0.00 0.00 0.00 4.04
79 80 4.098654 AGACCACATAAGGACAGAATCTCG 59.901 45.833 0.00 0.00 0.00 4.04
80 81 5.606348 AGACCACATAAGGACAGAATCTC 57.394 43.478 0.00 0.00 0.00 2.75
81 82 6.097554 CACTAGACCACATAAGGACAGAATCT 59.902 42.308 0.00 0.00 0.00 2.40
82 83 6.276847 CACTAGACCACATAAGGACAGAATC 58.723 44.000 0.00 0.00 0.00 2.52
83 84 5.129485 CCACTAGACCACATAAGGACAGAAT 59.871 44.000 0.00 0.00 0.00 2.40
84 85 4.466370 CCACTAGACCACATAAGGACAGAA 59.534 45.833 0.00 0.00 0.00 3.02
85 86 4.023980 CCACTAGACCACATAAGGACAGA 58.976 47.826 0.00 0.00 0.00 3.41
86 87 3.769844 ACCACTAGACCACATAAGGACAG 59.230 47.826 0.00 0.00 0.00 3.51
87 88 3.786553 ACCACTAGACCACATAAGGACA 58.213 45.455 0.00 0.00 0.00 4.02
88 89 5.198965 TCTACCACTAGACCACATAAGGAC 58.801 45.833 0.00 0.00 0.00 3.85
89 90 5.461516 TCTACCACTAGACCACATAAGGA 57.538 43.478 0.00 0.00 0.00 3.36
90 91 6.732896 ATTCTACCACTAGACCACATAAGG 57.267 41.667 0.00 0.00 0.00 2.69
91 92 9.132923 TCTTATTCTACCACTAGACCACATAAG 57.867 37.037 0.00 0.51 32.77 1.73
92 93 8.910944 GTCTTATTCTACCACTAGACCACATAA 58.089 37.037 0.00 0.00 0.00 1.90
93 94 8.057011 TGTCTTATTCTACCACTAGACCACATA 58.943 37.037 0.00 0.00 32.96 2.29
94 95 6.895756 TGTCTTATTCTACCACTAGACCACAT 59.104 38.462 0.00 0.00 32.96 3.21
95 96 6.152323 GTGTCTTATTCTACCACTAGACCACA 59.848 42.308 0.00 0.00 32.96 4.17
115 116 2.138656 GACGTACTGCCACCGTGTCT 62.139 60.000 0.00 0.00 34.51 3.41
120 121 1.736645 CAAGGACGTACTGCCACCG 60.737 63.158 0.00 0.00 0.00 4.94
123 124 1.116536 TCACCAAGGACGTACTGCCA 61.117 55.000 0.00 0.00 0.00 4.92
127 128 2.897969 ACAATCTCACCAAGGACGTACT 59.102 45.455 0.00 0.00 0.00 2.73
128 129 3.314541 ACAATCTCACCAAGGACGTAC 57.685 47.619 0.00 0.00 0.00 3.67
129 130 4.084287 ACTACAATCTCACCAAGGACGTA 58.916 43.478 0.00 0.00 0.00 3.57
130 131 2.897969 ACTACAATCTCACCAAGGACGT 59.102 45.455 0.00 0.00 0.00 4.34
131 132 3.512680 GACTACAATCTCACCAAGGACG 58.487 50.000 0.00 0.00 0.00 4.79
145 243 2.027192 GCTCCAATCCTGTGGACTACAA 60.027 50.000 0.00 0.00 42.97 2.41
147 245 1.134371 GGCTCCAATCCTGTGGACTAC 60.134 57.143 0.00 0.00 42.97 2.73
148 246 1.204146 GGCTCCAATCCTGTGGACTA 58.796 55.000 0.00 0.00 42.97 2.59
149 247 1.903877 CGGCTCCAATCCTGTGGACT 61.904 60.000 0.00 0.00 42.97 3.85
151 249 1.488705 AACGGCTCCAATCCTGTGGA 61.489 55.000 0.00 0.00 45.72 4.02
152 250 1.002134 AACGGCTCCAATCCTGTGG 60.002 57.895 0.00 0.00 40.33 4.17
153 251 0.036010 AGAACGGCTCCAATCCTGTG 60.036 55.000 0.00 0.00 0.00 3.66
154 252 0.693049 AAGAACGGCTCCAATCCTGT 59.307 50.000 0.00 0.00 0.00 4.00
156 254 2.104963 GGATAAGAACGGCTCCAATCCT 59.895 50.000 9.19 0.00 32.03 3.24
157 255 2.104963 AGGATAAGAACGGCTCCAATCC 59.895 50.000 8.71 8.71 33.61 3.01
158 256 3.477210 AGGATAAGAACGGCTCCAATC 57.523 47.619 0.00 0.00 0.00 2.67
159 257 3.456277 AGAAGGATAAGAACGGCTCCAAT 59.544 43.478 0.00 0.00 0.00 3.16
160 258 2.838202 AGAAGGATAAGAACGGCTCCAA 59.162 45.455 0.00 0.00 0.00 3.53
161 259 2.467880 AGAAGGATAAGAACGGCTCCA 58.532 47.619 0.00 0.00 0.00 3.86
163 261 4.922471 ACTAGAAGGATAAGAACGGCTC 57.078 45.455 0.00 0.00 0.00 4.70
164 262 4.680975 GCAACTAGAAGGATAAGAACGGCT 60.681 45.833 0.00 0.00 0.00 5.52
165 263 3.556365 GCAACTAGAAGGATAAGAACGGC 59.444 47.826 0.00 0.00 0.00 5.68
166 264 3.797256 CGCAACTAGAAGGATAAGAACGG 59.203 47.826 0.00 0.00 0.00 4.44
167 265 3.797256 CCGCAACTAGAAGGATAAGAACG 59.203 47.826 0.00 0.00 0.00 3.95
168 266 4.120589 CCCGCAACTAGAAGGATAAGAAC 58.879 47.826 0.00 0.00 0.00 3.01
169 267 3.431766 GCCCGCAACTAGAAGGATAAGAA 60.432 47.826 0.00 0.00 0.00 2.52
170 268 2.102588 GCCCGCAACTAGAAGGATAAGA 59.897 50.000 0.00 0.00 0.00 2.10
171 269 2.484889 GCCCGCAACTAGAAGGATAAG 58.515 52.381 0.00 0.00 0.00 1.73
172 270 1.140252 GGCCCGCAACTAGAAGGATAA 59.860 52.381 0.00 0.00 0.00 1.75
173 271 0.756903 GGCCCGCAACTAGAAGGATA 59.243 55.000 0.00 0.00 0.00 2.59
174 272 0.983378 AGGCCCGCAACTAGAAGGAT 60.983 55.000 0.00 0.00 0.00 3.24
175 273 1.612442 AGGCCCGCAACTAGAAGGA 60.612 57.895 0.00 0.00 0.00 3.36
176 274 1.450312 CAGGCCCGCAACTAGAAGG 60.450 63.158 0.00 0.00 0.00 3.46
177 275 1.450312 CCAGGCCCGCAACTAGAAG 60.450 63.158 0.00 0.00 0.00 2.85
178 276 2.668632 CCAGGCCCGCAACTAGAA 59.331 61.111 0.00 0.00 0.00 2.10
179 277 4.096003 GCCAGGCCCGCAACTAGA 62.096 66.667 0.00 0.00 0.00 2.43
180 278 4.408821 TGCCAGGCCCGCAACTAG 62.409 66.667 12.56 0.00 32.05 2.57
181 279 4.408821 CTGCCAGGCCCGCAACTA 62.409 66.667 15.46 0.00 35.40 2.24
189 287 3.971702 AGTGGTTCCTGCCAGGCC 61.972 66.667 9.64 2.80 39.53 5.19
190 288 2.674380 CAGTGGTTCCTGCCAGGC 60.674 66.667 5.66 3.66 39.53 4.85
191 289 0.178992 TTTCAGTGGTTCCTGCCAGG 60.179 55.000 3.69 3.69 39.53 4.45
192 290 0.954452 GTTTCAGTGGTTCCTGCCAG 59.046 55.000 0.00 0.00 39.53 4.85
193 291 0.550914 AGTTTCAGTGGTTCCTGCCA 59.449 50.000 0.00 0.00 35.93 4.92
194 292 1.202818 AGAGTTTCAGTGGTTCCTGCC 60.203 52.381 0.00 0.00 32.32 4.85
195 293 2.262423 AGAGTTTCAGTGGTTCCTGC 57.738 50.000 0.00 0.00 32.32 4.85
196 294 5.413309 AGATAGAGTTTCAGTGGTTCCTG 57.587 43.478 0.00 0.00 0.00 3.86
197 295 5.308237 ACAAGATAGAGTTTCAGTGGTTCCT 59.692 40.000 0.00 0.00 0.00 3.36
198 296 5.552178 ACAAGATAGAGTTTCAGTGGTTCC 58.448 41.667 0.00 0.00 0.00 3.62
199 297 6.931840 AGAACAAGATAGAGTTTCAGTGGTTC 59.068 38.462 0.00 0.00 0.00 3.62
200 298 6.831976 AGAACAAGATAGAGTTTCAGTGGTT 58.168 36.000 0.00 0.00 0.00 3.67
201 299 6.426646 AGAACAAGATAGAGTTTCAGTGGT 57.573 37.500 0.00 0.00 0.00 4.16
202 300 6.528423 CGTAGAACAAGATAGAGTTTCAGTGG 59.472 42.308 0.00 0.00 0.00 4.00
203 301 6.528423 CCGTAGAACAAGATAGAGTTTCAGTG 59.472 42.308 0.00 0.00 0.00 3.66
204 302 6.208994 ACCGTAGAACAAGATAGAGTTTCAGT 59.791 38.462 0.00 0.00 0.00 3.41
205 303 6.622549 ACCGTAGAACAAGATAGAGTTTCAG 58.377 40.000 0.00 0.00 0.00 3.02
206 304 6.433404 AGACCGTAGAACAAGATAGAGTTTCA 59.567 38.462 0.00 0.00 0.00 2.69
207 305 6.854778 AGACCGTAGAACAAGATAGAGTTTC 58.145 40.000 0.00 0.00 0.00 2.78
208 306 6.837471 AGACCGTAGAACAAGATAGAGTTT 57.163 37.500 0.00 0.00 0.00 2.66
209 307 7.337167 TCTAGACCGTAGAACAAGATAGAGTT 58.663 38.462 0.00 0.00 0.00 3.01
210 308 6.887013 TCTAGACCGTAGAACAAGATAGAGT 58.113 40.000 0.00 0.00 0.00 3.24
211 309 7.789273 TTCTAGACCGTAGAACAAGATAGAG 57.211 40.000 0.00 0.00 0.00 2.43
212 310 7.201714 GCTTTCTAGACCGTAGAACAAGATAGA 60.202 40.741 0.00 0.00 33.73 1.98
213 311 6.913673 GCTTTCTAGACCGTAGAACAAGATAG 59.086 42.308 0.00 0.00 33.73 2.08
214 312 6.602406 AGCTTTCTAGACCGTAGAACAAGATA 59.398 38.462 0.00 0.00 33.73 1.98
215 313 5.419471 AGCTTTCTAGACCGTAGAACAAGAT 59.581 40.000 0.00 0.00 33.73 2.40
216 314 4.765856 AGCTTTCTAGACCGTAGAACAAGA 59.234 41.667 0.00 0.00 33.73 3.02
217 315 5.061920 AGCTTTCTAGACCGTAGAACAAG 57.938 43.478 0.00 0.00 33.73 3.16
218 316 4.082354 GGAGCTTTCTAGACCGTAGAACAA 60.082 45.833 0.00 0.00 33.73 2.83
219 317 3.442977 GGAGCTTTCTAGACCGTAGAACA 59.557 47.826 0.00 0.00 33.73 3.18
220 318 3.442977 TGGAGCTTTCTAGACCGTAGAAC 59.557 47.826 0.00 0.00 33.73 3.01
221 319 3.693807 TGGAGCTTTCTAGACCGTAGAA 58.306 45.455 0.00 0.00 0.00 2.10
222 320 3.361281 TGGAGCTTTCTAGACCGTAGA 57.639 47.619 0.00 0.00 0.00 2.59
223 321 3.243569 CCATGGAGCTTTCTAGACCGTAG 60.244 52.174 5.56 0.00 0.00 3.51
224 322 2.693591 CCATGGAGCTTTCTAGACCGTA 59.306 50.000 5.56 0.00 0.00 4.02
225 323 1.482593 CCATGGAGCTTTCTAGACCGT 59.517 52.381 5.56 0.00 0.00 4.83
226 324 1.482593 ACCATGGAGCTTTCTAGACCG 59.517 52.381 21.47 0.00 0.00 4.79
227 325 3.636153 AACCATGGAGCTTTCTAGACC 57.364 47.619 21.47 0.00 0.00 3.85
228 326 5.335976 CCAAAAACCATGGAGCTTTCTAGAC 60.336 44.000 21.47 0.00 40.56 2.59
229 327 4.766891 CCAAAAACCATGGAGCTTTCTAGA 59.233 41.667 21.47 0.00 40.56 2.43
230 328 4.766891 TCCAAAAACCATGGAGCTTTCTAG 59.233 41.667 21.47 8.30 41.98 2.43
231 329 4.735369 TCCAAAAACCATGGAGCTTTCTA 58.265 39.130 21.47 2.35 41.98 2.10
232 330 3.575805 TCCAAAAACCATGGAGCTTTCT 58.424 40.909 21.47 0.00 41.98 2.52
241 339 3.186205 GGCATTCGTTTCCAAAAACCATG 59.814 43.478 0.00 0.00 41.46 3.66
251 349 1.597663 CCATACTCGGCATTCGTTTCC 59.402 52.381 0.00 0.00 40.32 3.13
256 354 3.489785 GTCTAAACCATACTCGGCATTCG 59.510 47.826 0.00 0.00 40.90 3.34
257 355 4.694339 AGTCTAAACCATACTCGGCATTC 58.306 43.478 0.00 0.00 0.00 2.67
258 356 4.755266 AGTCTAAACCATACTCGGCATT 57.245 40.909 0.00 0.00 0.00 3.56
260 358 5.221382 GGAATAGTCTAAACCATACTCGGCA 60.221 44.000 0.00 0.00 0.00 5.69
261 359 5.010820 AGGAATAGTCTAAACCATACTCGGC 59.989 44.000 7.96 0.00 0.00 5.54
262 360 6.448006 CAGGAATAGTCTAAACCATACTCGG 58.552 44.000 7.96 0.00 0.00 4.63
263 361 5.921408 GCAGGAATAGTCTAAACCATACTCG 59.079 44.000 7.96 0.00 0.00 4.18
266 364 5.758784 GTGGCAGGAATAGTCTAAACCATAC 59.241 44.000 0.00 0.00 0.00 2.39
267 365 5.665812 AGTGGCAGGAATAGTCTAAACCATA 59.334 40.000 0.00 0.00 0.00 2.74
268 366 4.475016 AGTGGCAGGAATAGTCTAAACCAT 59.525 41.667 0.00 0.00 0.00 3.55
270 368 4.489306 AGTGGCAGGAATAGTCTAAACC 57.511 45.455 0.00 0.00 0.00 3.27
271 369 6.315642 GGTTTAGTGGCAGGAATAGTCTAAAC 59.684 42.308 17.76 17.76 41.76 2.01
272 370 6.013206 TGGTTTAGTGGCAGGAATAGTCTAAA 60.013 38.462 0.00 0.00 0.00 1.85
354 457 8.902806 CCCTTCAAGCTATTACATGTTTCATTA 58.097 33.333 2.30 0.00 0.00 1.90
358 461 6.759497 ACCCTTCAAGCTATTACATGTTTC 57.241 37.500 2.30 0.00 0.00 2.78
359 462 6.318900 GCTACCCTTCAAGCTATTACATGTTT 59.681 38.462 2.30 0.00 35.80 2.83
360 463 5.823045 GCTACCCTTCAAGCTATTACATGTT 59.177 40.000 2.30 0.00 35.80 2.71
361 464 5.104527 TGCTACCCTTCAAGCTATTACATGT 60.105 40.000 2.69 2.69 39.53 3.21
362 465 5.368145 TGCTACCCTTCAAGCTATTACATG 58.632 41.667 0.00 0.00 39.53 3.21
363 466 5.366768 TCTGCTACCCTTCAAGCTATTACAT 59.633 40.000 0.00 0.00 39.53 2.29
364 467 4.714802 TCTGCTACCCTTCAAGCTATTACA 59.285 41.667 0.00 0.00 39.53 2.41
374 486 1.902508 CAGGAGTTCTGCTACCCTTCA 59.097 52.381 0.00 0.00 36.60 3.02
386 498 2.977914 TGAACATAGCAGCAGGAGTTC 58.022 47.619 11.08 11.08 36.73 3.01
395 507 6.206048 TGAATAAGATGGCATGAACATAGCAG 59.794 38.462 3.81 0.00 0.00 4.24
396 508 6.063404 TGAATAAGATGGCATGAACATAGCA 58.937 36.000 3.81 0.00 0.00 3.49
405 517 8.869897 GCAAAATATCATGAATAAGATGGCATG 58.130 33.333 3.81 0.00 39.47 4.06
406 518 8.812972 AGCAAAATATCATGAATAAGATGGCAT 58.187 29.630 0.00 0.00 0.00 4.40
408 520 9.136952 GAAGCAAAATATCATGAATAAGATGGC 57.863 33.333 0.00 0.00 0.00 4.40
411 523 9.909644 GCTGAAGCAAAATATCATGAATAAGAT 57.090 29.630 0.00 0.00 41.59 2.40
418 598 6.679638 GCTGAAGCTGAAGCAAAATATCATGA 60.680 38.462 14.42 0.00 45.16 3.07
454 637 7.425606 AGTTTTGACCATATCAGAAAACACAC 58.574 34.615 0.00 0.00 39.20 3.82
471 654 3.616821 GGTTCCAGCACAAAAGTTTTGAC 59.383 43.478 30.20 21.51 0.00 3.18
477 660 1.064017 TGGAGGTTCCAGCACAAAAGT 60.064 47.619 0.00 0.00 42.67 2.66
490 673 7.690256 AGTTCATATAACTGAAACTGGAGGTT 58.310 34.615 0.00 0.00 36.92 3.50
492 675 7.560368 AGAGTTCATATAACTGAAACTGGAGG 58.440 38.462 0.00 0.00 36.92 4.30
503 686 6.252599 TCCATGGCAAGAGTTCATATAACT 57.747 37.500 6.96 0.00 0.00 2.24
577 769 6.462207 CCTGTTGAGAGAGAGAGAGAAAACAA 60.462 42.308 0.00 0.00 0.00 2.83
578 770 5.010516 CCTGTTGAGAGAGAGAGAGAAAACA 59.989 44.000 0.00 0.00 0.00 2.83
579 771 5.469479 CCTGTTGAGAGAGAGAGAGAAAAC 58.531 45.833 0.00 0.00 0.00 2.43
580 772 4.021544 GCCTGTTGAGAGAGAGAGAGAAAA 60.022 45.833 0.00 0.00 0.00 2.29
581 773 3.509575 GCCTGTTGAGAGAGAGAGAGAAA 59.490 47.826 0.00 0.00 0.00 2.52
582 774 3.088532 GCCTGTTGAGAGAGAGAGAGAA 58.911 50.000 0.00 0.00 0.00 2.87
583 775 2.308570 AGCCTGTTGAGAGAGAGAGAGA 59.691 50.000 0.00 0.00 0.00 3.10
584 776 2.726821 AGCCTGTTGAGAGAGAGAGAG 58.273 52.381 0.00 0.00 0.00 3.20
585 777 2.897271 AGCCTGTTGAGAGAGAGAGA 57.103 50.000 0.00 0.00 0.00 3.10
586 778 3.673052 CGAAAGCCTGTTGAGAGAGAGAG 60.673 52.174 0.00 0.00 0.00 3.20
587 779 2.230025 CGAAAGCCTGTTGAGAGAGAGA 59.770 50.000 0.00 0.00 0.00 3.10
588 780 2.605030 CGAAAGCCTGTTGAGAGAGAG 58.395 52.381 0.00 0.00 0.00 3.20
589 781 2.732412 CGAAAGCCTGTTGAGAGAGA 57.268 50.000 0.00 0.00 0.00 3.10
603 795 0.385390 AAACAGCAGTTGGGCGAAAG 59.615 50.000 0.00 0.00 38.17 2.62
604 796 0.820871 AAAACAGCAGTTGGGCGAAA 59.179 45.000 0.00 0.00 38.17 3.46
605 797 0.383949 GAAAACAGCAGTTGGGCGAA 59.616 50.000 0.00 0.00 38.17 4.70
606 798 0.465460 AGAAAACAGCAGTTGGGCGA 60.465 50.000 0.00 0.00 38.17 5.54
607 799 0.385390 AAGAAAACAGCAGTTGGGCG 59.615 50.000 0.00 0.00 38.17 6.13
608 800 3.255642 TCATAAGAAAACAGCAGTTGGGC 59.744 43.478 0.00 0.00 38.17 5.36
609 801 5.221224 TGTTCATAAGAAAACAGCAGTTGGG 60.221 40.000 0.00 0.00 38.17 4.12
610 802 5.687285 GTGTTCATAAGAAAACAGCAGTTGG 59.313 40.000 0.00 0.00 40.92 3.77
611 803 6.264832 TGTGTTCATAAGAAAACAGCAGTTG 58.735 36.000 0.00 0.00 44.92 3.16
612 804 6.449635 TGTGTTCATAAGAAAACAGCAGTT 57.550 33.333 0.00 0.00 44.92 3.16
644 836 8.891671 AATGTGTTTCAGCAAAAACAGATATT 57.108 26.923 19.80 15.12 46.43 1.28
715 907 8.637986 TCAGCAGGTTTAAATAAATGTGTTTCT 58.362 29.630 0.00 0.00 0.00 2.52
716 908 8.810652 TCAGCAGGTTTAAATAAATGTGTTTC 57.189 30.769 0.00 0.00 0.00 2.78
722 926 8.586570 TGTGTTTCAGCAGGTTTAAATAAATG 57.413 30.769 0.00 0.00 0.00 2.32
727 931 9.777297 AATAAATGTGTTTCAGCAGGTTTAAAT 57.223 25.926 0.00 0.00 0.00 1.40
731 935 9.606631 TTTAAATAAATGTGTTTCAGCAGGTTT 57.393 25.926 0.00 0.00 0.00 3.27
732 936 9.040939 GTTTAAATAAATGTGTTTCAGCAGGTT 57.959 29.630 0.00 0.00 0.00 3.50
734 938 7.872483 AGGTTTAAATAAATGTGTTTCAGCAGG 59.128 33.333 0.00 0.00 0.00 4.85
735 939 8.702438 CAGGTTTAAATAAATGTGTTTCAGCAG 58.298 33.333 0.00 0.00 0.00 4.24
771 1732 8.726988 GCCAGACAGACAGTAATACAAATAAAA 58.273 33.333 0.00 0.00 0.00 1.52
778 2016 3.056107 GGTGCCAGACAGACAGTAATACA 60.056 47.826 0.00 0.00 0.00 2.29
779 2017 3.522553 GGTGCCAGACAGACAGTAATAC 58.477 50.000 0.00 0.00 0.00 1.89
781 2019 1.066858 CGGTGCCAGACAGACAGTAAT 60.067 52.381 0.00 0.00 0.00 1.89
783 2021 1.964448 CGGTGCCAGACAGACAGTA 59.036 57.895 0.00 0.00 0.00 2.74
786 2024 2.807107 AAGCGGTGCCAGACAGACA 61.807 57.895 0.00 0.00 0.00 3.41
788 2026 2.031012 CAAGCGGTGCCAGACAGA 59.969 61.111 0.00 0.00 0.00 3.41
789 2027 2.281070 ACAAGCGGTGCCAGACAG 60.281 61.111 0.00 0.00 0.00 3.51
790 2028 2.591429 CACAAGCGGTGCCAGACA 60.591 61.111 0.00 0.00 41.36 3.41
792 2030 4.641645 CCCACAAGCGGTGCCAGA 62.642 66.667 6.09 0.00 46.50 3.86
805 2382 3.077359 GCATCATAGAATGCTACCCCAC 58.923 50.000 1.74 0.00 46.81 4.61
806 2383 3.423539 GCATCATAGAATGCTACCCCA 57.576 47.619 1.74 0.00 46.81 4.96
814 2391 3.324117 CCGACCTCTGCATCATAGAATG 58.676 50.000 0.00 0.00 0.00 2.67
817 2394 1.332195 CCCGACCTCTGCATCATAGA 58.668 55.000 0.00 0.00 0.00 1.98
818 2395 0.319728 CCCCGACCTCTGCATCATAG 59.680 60.000 0.00 0.00 0.00 2.23
819 2396 0.398522 ACCCCGACCTCTGCATCATA 60.399 55.000 0.00 0.00 0.00 2.15
821 2398 1.001120 TACCCCGACCTCTGCATCA 59.999 57.895 0.00 0.00 0.00 3.07
823 2400 1.001760 AGTACCCCGACCTCTGCAT 59.998 57.895 0.00 0.00 0.00 3.96
825 2402 2.424733 GGAGTACCCCGACCTCTGC 61.425 68.421 0.00 0.00 0.00 4.26
826 2403 3.936535 GGAGTACCCCGACCTCTG 58.063 66.667 0.00 0.00 0.00 3.35
836 2413 3.782656 TTTTCTGACAAGGGGAGTACC 57.217 47.619 0.00 0.00 39.11 3.34
859 2446 3.009723 TCGGCATCAAAGACCTTCATTC 58.990 45.455 0.00 0.00 0.00 2.67
863 2450 1.740025 CCTTCGGCATCAAAGACCTTC 59.260 52.381 0.00 0.00 0.00 3.46
882 2622 0.823356 TCCAGCTTCCAAGTTGTGCC 60.823 55.000 1.45 0.00 35.74 5.01
887 2627 1.362224 TAGGCTCCAGCTTCCAAGTT 58.638 50.000 0.00 0.00 41.70 2.66
915 2655 7.623677 TCGATCTTTATATGGTGGGAAGGATAT 59.376 37.037 0.00 0.00 0.00 1.63
945 2689 6.293680 GCTTTGGCTTTAGGCTGATATCTTAC 60.294 42.308 3.98 0.00 41.69 2.34
959 2714 2.867251 GCAAGTGCATGCTTTGGCTTTA 60.867 45.455 26.00 1.73 43.06 1.85
1334 3099 4.101585 TGGAGCCTATGAGACTTGTATTGG 59.898 45.833 0.00 0.00 0.00 3.16
1343 3108 0.980423 GGGGATGGAGCCTATGAGAC 59.020 60.000 0.00 0.00 0.00 3.36
1349 3114 0.117140 ATCATCGGGGATGGAGCCTA 59.883 55.000 5.83 0.00 40.15 3.93
1551 3323 3.302161 TGAGCCGCTTAGGTAATTCCTA 58.698 45.455 0.00 0.97 46.10 2.94
1612 3384 3.945285 CTGTTGTTACCAGTGTCCAGTTT 59.055 43.478 0.00 0.00 0.00 2.66
1614 3386 2.745152 GCTGTTGTTACCAGTGTCCAGT 60.745 50.000 0.00 0.00 32.41 4.00
1676 3448 2.972713 TGAAGGTCAAGGTACTCAAGCT 59.027 45.455 0.00 0.00 38.49 3.74
1769 3541 3.569701 ACCAGTTAAGTTGCAGTTCCATG 59.430 43.478 0.00 0.00 0.00 3.66
1772 3544 2.552743 GGACCAGTTAAGTTGCAGTTCC 59.447 50.000 0.00 0.00 0.00 3.62
1778 3550 2.492088 GGGATTGGACCAGTTAAGTTGC 59.508 50.000 0.00 0.00 0.00 4.17
1863 3635 0.039618 GCCCCAAAGGAATCTCACCA 59.960 55.000 0.00 0.00 38.24 4.17
1875 3647 0.693049 GACAAGAGGAGAGCCCCAAA 59.307 55.000 0.00 0.00 34.66 3.28
1929 3701 2.499214 TGGCACAACACCCTCAAAC 58.501 52.632 0.00 0.00 31.92 2.93
2000 3772 1.973812 GGAACTGGACCAGCAAGGC 60.974 63.158 21.95 6.29 43.14 4.35
2046 3818 2.547826 CCTTGTAGCGCTAGTAAACCC 58.452 52.381 19.48 4.57 0.00 4.11
2058 3830 2.003301 GACAGCTTACAGCCTTGTAGC 58.997 52.381 0.00 0.00 43.77 3.58
2115 3887 2.495270 TGAGAGATCCAACTCAGTGAGC 59.505 50.000 20.31 2.58 38.08 4.26
2123 3895 5.248020 AGTTGATTGTCTGAGAGATCCAACT 59.752 40.000 15.97 15.97 0.00 3.16
2131 3903 6.030548 TCCAACTAGTTGATTGTCTGAGAG 57.969 41.667 32.50 13.86 42.93 3.20
2155 3927 1.988107 ACCAAGAGAAGCAGGAATGGA 59.012 47.619 0.00 0.00 0.00 3.41
2207 3979 9.784531 ATACTGATCCAAGTAACATATTTCTGG 57.215 33.333 0.00 0.00 36.28 3.86
2220 3992 4.801330 TGTTCGTGATACTGATCCAAGT 57.199 40.909 0.00 0.00 0.00 3.16
2233 4005 2.819019 TGGTACTACCGATTGTTCGTGA 59.181 45.455 0.62 0.00 42.58 4.35
2282 4054 3.793888 CCCCCACTAGGCGGTTCC 61.794 72.222 0.00 0.00 0.00 3.62
2350 4122 8.244113 ACCGGTGAAATTATTTGAAGAGATTTC 58.756 33.333 6.12 0.00 37.28 2.17
2403 4175 0.107312 AAATCTGCAGCTGGCTCGAT 60.107 50.000 17.12 10.71 45.15 3.59
2438 4210 5.158494 CCGGAAGTTTACCAACTAAATTGC 58.842 41.667 0.00 0.00 42.89 3.56
2452 4224 3.048337 TGAAATCGTAGCCGGAAGTTT 57.952 42.857 5.05 0.00 33.95 2.66
2488 4260 9.504710 CTGATTCTCTGAAAAATCTAGCAATTG 57.495 33.333 0.00 0.00 33.86 2.32
2564 4336 1.266718 GATTTTCGTGCAGGACAAGCA 59.733 47.619 16.21 0.00 40.19 3.91
2570 4342 0.516877 CAAGCGATTTTCGTGCAGGA 59.483 50.000 4.68 4.68 42.81 3.86
2579 4351 2.035632 TGGACCCAAACAAGCGATTTT 58.964 42.857 0.00 0.00 0.00 1.82
2671 4443 1.139654 GTTACCAATCCCCTCCGGTAC 59.860 57.143 0.00 0.00 33.78 3.34
2775 4547 1.064685 TGAGACACATCTAGCCGGAGA 60.065 52.381 5.05 0.00 34.34 3.71
2780 4552 5.241662 AGAAGTTTTGAGACACATCTAGCC 58.758 41.667 0.00 0.00 34.34 3.93
2832 4604 8.259411 TCCATGCTGTAAATTTGCTTCAAATAT 58.741 29.630 7.80 0.00 42.32 1.28
2918 4690 2.234661 TGTGACAGGTTCAGATAGGCTG 59.765 50.000 0.00 0.00 46.31 4.85
2925 4697 4.149511 TGAATTGTGTGACAGGTTCAGA 57.850 40.909 3.91 0.00 33.03 3.27
3115 4887 8.579850 TGTTGGCTAATATTTGAGAAGACAAT 57.420 30.769 6.71 0.00 37.51 2.71
3116 4888 7.994425 TGTTGGCTAATATTTGAGAAGACAA 57.006 32.000 0.77 0.44 32.87 3.18
3477 5250 2.350899 TGATTGCAACAATCAAGCCG 57.649 45.000 18.09 0.00 34.07 5.52
3480 5253 8.506437 TCTAGTACTTTGATTGCAACAATCAAG 58.494 33.333 25.93 22.33 44.49 3.02
3501 5274 4.621747 GCTTGTTCTACCTGCATGTCTAGT 60.622 45.833 0.00 0.00 0.00 2.57
3514 5287 3.516615 AGCTTCTCATCGCTTGTTCTAC 58.483 45.455 0.00 0.00 31.17 2.59
3630 5403 3.738830 CCATTGGGCATGTATTGAAGG 57.261 47.619 0.00 0.00 0.00 3.46
3705 5478 2.364970 GAGCATGATGCCTAGTCTCACT 59.635 50.000 14.72 0.00 46.52 3.41
3707 5480 1.339291 CGAGCATGATGCCTAGTCTCA 59.661 52.381 14.72 0.00 46.52 3.27
3753 5526 1.968493 ACCTCGTAGTGTTCATGGTGT 59.032 47.619 0.00 0.00 0.00 4.16
3778 5551 0.590195 GGCTTCAAGTCACAGTGCAG 59.410 55.000 0.00 0.00 0.00 4.41
3829 5602 1.172180 CCAAAGTCCGCCACATGTGT 61.172 55.000 23.79 1.62 0.00 3.72
3840 5613 0.681175 ACCTTGCAATGCCAAAGTCC 59.319 50.000 1.53 0.00 0.00 3.85
4030 5804 4.885325 ACTTTTTCGTGAAGCTTTTCCCTA 59.115 37.500 0.00 0.00 0.00 3.53
4096 5870 1.743996 GCATCTGTGGGTCTCTTTCC 58.256 55.000 0.00 0.00 0.00 3.13
4167 5941 1.485066 ACAACACGGACAAGTTCTCCT 59.515 47.619 0.00 0.00 0.00 3.69
4169 5943 1.597663 CCACAACACGGACAAGTTCTC 59.402 52.381 0.00 0.00 0.00 2.87
4194 5968 3.983044 AAAGACCCTTGTAGTAGCTGG 57.017 47.619 0.00 0.00 0.00 4.85
4217 5991 0.541296 AAAGCCTTCCATGCTGCAGT 60.541 50.000 16.64 0.00 39.48 4.40
4244 6018 4.155709 TGCCAAACCCAACTCAAATATCA 58.844 39.130 0.00 0.00 0.00 2.15
4352 9406 0.107897 ATTCCGTGCAACCGCTATCA 60.108 50.000 0.00 0.00 39.64 2.15
4361 9415 0.537143 ACTGGCTTCATTCCGTGCAA 60.537 50.000 0.00 0.00 0.00 4.08
4362 9416 0.955428 GACTGGCTTCATTCCGTGCA 60.955 55.000 0.00 0.00 0.00 4.57
4627 10598 9.173021 TGCTTATTGTGTAATAACATACAAGCT 57.827 29.630 15.44 0.00 41.15 3.74
4637 10608 5.881777 TTGCGGTGCTTATTGTGTAATAA 57.118 34.783 0.00 0.00 36.63 1.40
4645 10616 9.624697 AATGTATTTATATTGCGGTGCTTATTG 57.375 29.630 0.00 0.00 0.00 1.90
4672 10643 1.068083 CTCACAGGATGGCGCGTAT 59.932 57.895 8.43 2.25 43.62 3.06
4679 10650 1.153489 CTCACGCCTCACAGGATGG 60.153 63.158 0.00 0.00 43.62 3.51
4812 10783 2.033448 CCAAGGGTGGCGTGCTTA 59.967 61.111 0.00 0.00 38.35 3.09
4813 10784 3.850098 CTCCAAGGGTGGCGTGCTT 62.850 63.158 0.00 0.00 45.54 3.91
4814 10785 4.335647 CTCCAAGGGTGGCGTGCT 62.336 66.667 0.00 0.00 45.54 4.40
4815 10786 3.842925 TTCTCCAAGGGTGGCGTGC 62.843 63.158 0.00 0.00 45.54 5.34
4816 10787 0.609131 ATTTCTCCAAGGGTGGCGTG 60.609 55.000 0.00 0.00 45.54 5.34
4817 10788 0.112412 AATTTCTCCAAGGGTGGCGT 59.888 50.000 0.00 0.00 45.54 5.68
4818 10789 0.527565 CAATTTCTCCAAGGGTGGCG 59.472 55.000 0.00 0.00 45.54 5.69
4819 10790 1.546029 GTCAATTTCTCCAAGGGTGGC 59.454 52.381 0.00 0.00 45.54 5.01
4821 10792 2.171003 GGGTCAATTTCTCCAAGGGTG 58.829 52.381 0.00 0.00 0.00 4.61
4822 10793 1.271926 CGGGTCAATTTCTCCAAGGGT 60.272 52.381 0.00 0.00 0.00 4.34
4823 10794 1.004277 TCGGGTCAATTTCTCCAAGGG 59.996 52.381 0.00 0.00 0.00 3.95
4889 10905 2.091112 CGTCAGTGCCTTCGAGCAG 61.091 63.158 0.00 0.00 45.14 4.24
4890 10906 2.049156 CGTCAGTGCCTTCGAGCA 60.049 61.111 0.00 0.00 41.46 4.26
4891 10907 3.482783 GCGTCAGTGCCTTCGAGC 61.483 66.667 0.00 0.00 0.00 5.03
4911 10927 1.134401 CATACACCATCTTGGGCGACT 60.134 52.381 0.00 0.00 43.37 4.18
4939 10955 1.740025 CTGGCCCGTCATCTTCTTTTC 59.260 52.381 0.00 0.00 0.00 2.29
4989 11005 1.079197 CACCTGCTGGTCATGCGTA 60.079 57.895 13.09 0.00 46.60 4.42
5217 11801 4.880164 TCTAATACACTAGAGGCTGGGTT 58.120 43.478 0.00 0.00 0.00 4.11
5275 11861 4.500716 CCAATAGAAAAACACCGCTTGGTT 60.501 41.667 0.00 0.00 46.51 3.67
5295 11881 2.092753 GGTGAGCTCATCTTCCATCCAA 60.093 50.000 21.47 0.00 0.00 3.53
5305 11891 2.295885 CCTCCATTTGGTGAGCTCATC 58.704 52.381 21.47 20.98 36.34 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.