AutoCloner

Multiple sequence alignment - TraesCS3A01G016700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G016700	chr3A	100.000	5167	0	0	1	5167	10826338	10831504	0.000000e+00	9542.0
1	TraesCS3A01G016700	chr3A	85.170	2205	204	46	2836	5007	11471634	11473748	0.000000e+00	2146.0
2	TraesCS3A01G016700	chr3A	88.069	1626	159	13	3031	4643	11382578	11384181	0.000000e+00	1895.0
3	TraesCS3A01G016700	chr3A	82.086	1122	172	22	831	1937	11411947	11413054	0.000000e+00	931.0
4	TraesCS3A01G016700	chr3A	82.900	1000	143	15	926	1919	11470208	11471185	0.000000e+00	874.0
5	TraesCS3A01G016700	chr3A	82.891	678	82	16	3987	4649	17187831	17188489	3.470000e-161	579.0
6	TraesCS3A01G016700	chrUn	96.905	2585	57	6	1721	4286	197248489	197245909	0.000000e+00	4309.0
7	TraesCS3A01G016700	chrUn	98.587	2194	22	4	1	2187	34655604	34653413	0.000000e+00	3871.0
8	TraesCS3A01G016700	chrUn	89.037	1423	133	17	2833	4250	267789714	267791118	0.000000e+00	1742.0
9	TraesCS3A01G016700	chrUn	89.085	1420	132	17	2836	4250	268797980	268796579	0.000000e+00	1742.0
10	TraesCS3A01G016700	chrUn	89.240	1394	133	9	3082	4475	214316730	214318106	0.000000e+00	1727.0
11	TraesCS3A01G016700	chrUn	87.767	1496	153	22	2765	4250	35312252	35310777	0.000000e+00	1722.0
12	TraesCS3A01G016700	chrUn	90.207	1307	114	8	2836	4134	35330502	35329202	0.000000e+00	1692.0
13	TraesCS3A01G016700	chrUn	83.081	1123	168	17	831	1937	267788002	267789118	0.000000e+00	1002.0
14	TraesCS3A01G016700	chrUn	83.081	1123	168	17	831	1937	268799695	268798579	0.000000e+00	1002.0
15	TraesCS3A01G016700	chrUn	81.944	1080	161	19	866	1931	35314211	35313152	0.000000e+00	883.0
16	TraesCS3A01G016700	chrUn	82.353	952	137	15	968	1909	35331891	35330961	0.000000e+00	798.0
17	TraesCS3A01G016700	chrUn	79.835	848	146	17	951	1784	36341891	36341055	3.440000e-166	595.0
18	TraesCS3A01G016700	chrUn	89.925	268	13	8	4536	4799	214320980	214321237	2.980000e-87	333.0
19	TraesCS3A01G016700	chrUn	81.375	349	50	8	395	735	35314813	35314472	2.370000e-68	270.0
20	TraesCS3A01G016700	chrUn	91.026	156	11	3	5013	5167	35306056	35305903	1.890000e-49	207.0
21	TraesCS3A01G016700	chrUn	91.026	156	11	3	5013	5167	229355896	229355743	1.890000e-49	207.0
22	TraesCS3A01G016700	chrUn	88.608	158	5	3	4865	5020	214321239	214321385	4.110000e-41	180.0
23	TraesCS3A01G016700	chrUn	84.762	105	13	3	5063	5166	35306158	35306056	9.150000e-18	102.0
24	TraesCS3A01G016700	chrUn	95.385	65	2	1	4957	5020	35307019	35306955	9.150000e-18	102.0
25	TraesCS3A01G016700	chrUn	84.762	105	13	3	5063	5166	229355998	229355896	9.150000e-18	102.0
26	TraesCS3A01G016700	chrUn	95.385	65	2	1	4957	5020	229356859	229356795	9.150000e-18	102.0
27	TraesCS3A01G016700	chr3D	88.365	1358	140	12	3038	4381	4989329	4990682	0.000000e+00	1616.0
28	TraesCS3A01G016700	chr3D	83.826	1014	136	17	925	1930	28329415	28328422	0.000000e+00	939.0
29	TraesCS3A01G016700	chr3D	81.141	859	133	21	926	1771	5013295	5014137	0.000000e+00	662.0
30	TraesCS3A01G016700	chr3D	98.072	363	7	0	1	363	5027343	5027705	2.630000e-177	632.0
31	TraesCS3A01G016700	chr3D	87.234	94	11	1	5013	5106	83465382	83465474	7.080000e-19	106.0
32	TraesCS3A01G016700	chr2A	81.208	149	12	9	4356	4504	665958366	665958498	7.080000e-19	106.0
33	TraesCS3A01G016700	chr5D	86.957	92	10	2	5016	5107	497016708	497016619	9.150000e-18	102.0
34	TraesCS3A01G016700	chr5D	84.946	93	12	2	5014	5106	202848041	202848131	5.510000e-15	93.5
35	TraesCS3A01G016700	chr4B	86.458	96	10	3	5013	5107	124617079	124616986	9.150000e-18	102.0
36	TraesCS3A01G016700	chr4B	82.857	105	13	4	5013	5115	605824839	605824940	7.130000e-14	89.8
37	TraesCS3A01G016700	chr7B	80.537	149	13	8	4356	4504	130131263	130131395	3.290000e-17	100.0
38	TraesCS3A01G016700	chr7B	79.730	148	14	8	4356	4503	130179154	130179285	5.510000e-15	93.5
39	TraesCS3A01G016700	chr7B	78.146	151	24	7	4356	4504	130192643	130192786	2.560000e-13	87.9
40	TraesCS3A01G016700	chr2D	89.474	76	7	1	5026	5100	9671765	9671690	1.530000e-15	95.3
41	TraesCS3A01G016700	chr1D	83.838	99	13	2	5013	5109	476746814	476746717	1.980000e-14	91.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G016700	chr3A	10826338	10831504	5166	False	9542.000000	9542	100.000000	1	5167	1	chr3A.!!$F1	5166
1	TraesCS3A01G016700	chr3A	11382578	11384181	1603	False	1895.000000	1895	88.069000	3031	4643	1	chr3A.!!$F2	1612
2	TraesCS3A01G016700	chr3A	11470208	11473748	3540	False	1510.000000	2146	84.035000	926	5007	2	chr3A.!!$F5	4081
3	TraesCS3A01G016700	chr3A	11411947	11413054	1107	False	931.000000	931	82.086000	831	1937	1	chr3A.!!$F3	1106
4	TraesCS3A01G016700	chr3A	17187831	17188489	658	False	579.000000	579	82.891000	3987	4649	1	chr3A.!!$F4	662
5	TraesCS3A01G016700	chrUn	197245909	197248489	2580	True	4309.000000	4309	96.905000	1721	4286	1	chrUn.!!$R3	2565
6	TraesCS3A01G016700	chrUn	34653413	34655604	2191	True	3871.000000	3871	98.587000	1	2187	1	chrUn.!!$R1	2186
7	TraesCS3A01G016700	chrUn	267788002	267791118	3116	False	1372.000000	1742	86.059000	831	4250	2	chrUn.!!$F2	3419
8	TraesCS3A01G016700	chrUn	268796579	268799695	3116	True	1372.000000	1742	86.083000	831	4250	2	chrUn.!!$R7	3419
9	TraesCS3A01G016700	chrUn	35329202	35331891	2689	True	1245.000000	1692	86.280000	968	4134	2	chrUn.!!$R5	3166
10	TraesCS3A01G016700	chrUn	214316730	214321385	4655	False	746.666667	1727	89.257667	3082	5020	3	chrUn.!!$F1	1938
11	TraesCS3A01G016700	chrUn	36341055	36341891	836	True	595.000000	595	79.835000	951	1784	1	chrUn.!!$R2	833
12	TraesCS3A01G016700	chrUn	35305903	35314813	8910	True	547.666667	1722	87.043167	395	5167	6	chrUn.!!$R4	4772
13	TraesCS3A01G016700	chr3D	4989329	4990682	1353	False	1616.000000	1616	88.365000	3038	4381	1	chr3D.!!$F1	1343
14	TraesCS3A01G016700	chr3D	28328422	28329415	993	True	939.000000	939	83.826000	925	1930	1	chr3D.!!$R1	1005
15	TraesCS3A01G016700	chr3D	5013295	5014137	842	False	662.000000	662	81.141000	926	1771	1	chr3D.!!$F2	845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
502	509	0.802494	AGAGCATTTAAACCACGCCG	59.198	50.000	0.00	0.00	0.00	6.46	F
948	1101	3.138468	AGGTTAAAGAAGACAAGTGCCCT	59.862	43.478	0.00	0.00	0.00	5.19	F
1719	1891	1.067974	TGTGAACATGAAGGTCGACGT	59.932	47.619	9.92	7.31	36.45	4.34	F
3546	4229	1.275291	CTTCTCGACAACCCCTAGCAA	59.725	52.381	0.00	0.00	0.00	3.91	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1598	1767	0.395312	TTTGAAGGTGTCCGGGTCTC	59.605	55.000	0.00	0.0	0.00	3.36	R
2402	3029	4.249661	GGGATGAAAGAACTCTGAGTGAC	58.750	47.826	11.71	8.9	0.00	3.67	R
3707	4390	0.469705	TGCTTTGGTCCCTTGCACAT	60.470	50.000	0.00	0.0	0.00	3.21	R
5136	12662	0.318699	GAGGCACGGTTTTTGCTTCC	60.319	55.000	0.00	0.0	39.53	3.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
116	117	3.000727	CACTCCGGACCACTTGATTAAC	58.999	50.000	0.00	0.00	0.00	2.01
138	139	4.937620	ACGGAAGAGTCGTGTACTACAATA	59.062	41.667	0.00	0.00	39.07	1.90
305	306	3.394674	TTCTGTCAACGACTAATGCCA	57.605	42.857	0.00	0.00	33.15	4.92
347	348	4.390129	TGAACTAATTGCCTAAACCCCA	57.610	40.909	0.00	0.00	0.00	4.96
449	450	7.663081	GGGCAGATACATTTGATATTTCTCTCA	59.337	37.037	0.00	0.00	0.00	3.27
481	488	3.749088	CCTGCGGAATACAAGTTACAACA	59.251	43.478	0.00	0.00	0.00	3.33
502	509	0.802494	AGAGCATTTAAACCACGCCG	59.198	50.000	0.00	0.00	0.00	6.46
948	1101	3.138468	AGGTTAAAGAAGACAAGTGCCCT	59.862	43.478	0.00	0.00	0.00	5.19
1053	1210	6.151312	TGTTACTGATCTGTCTTCTCACCTAC	59.849	42.308	8.69	0.00	0.00	3.18
1598	1767	3.003394	TGATGAACATGGCCCTAACAG	57.997	47.619	0.00	0.00	0.00	3.16
1636	1808	4.160252	TCAAAGAAAAAGCAAAGGCAGTCT	59.840	37.500	0.00	0.00	44.61	3.24
1643	1815	3.492102	AGCAAAGGCAGTCTTCAACTA	57.508	42.857	0.00	0.00	44.61	2.24
1719	1891	1.067974	TGTGAACATGAAGGTCGACGT	59.932	47.619	9.92	7.31	36.45	4.34
2261	2873	9.770097	TGTAAATTATGAAGCCAATCAACAAAA	57.230	25.926	0.00	0.00	32.06	2.44
2402	3029	8.557864	CCTACTTTTGAGCAGAATTCTATCATG	58.442	37.037	18.36	14.63	0.00	3.07
2693	3361	3.594603	AATACCACAAGTCTGAGGTCG	57.405	47.619	0.00	0.00	42.25	4.79
3546	4229	1.275291	CTTCTCGACAACCCCTAGCAA	59.725	52.381	0.00	0.00	0.00	3.91
3707	4390	1.613437	GACTTTGGCCTTGCAAAGCTA	59.387	47.619	19.01	11.06	44.44	3.32
4013	4696	0.393537	GGCAGCTGACTATTGTGGCT	60.394	55.000	20.43	0.00	34.02	4.75
4177	4860	1.769733	AACACATGAACACGCATTGC	58.230	45.000	0.00	0.00	0.00	3.56
4184	4867	3.632855	TGAACACGCATTGCATGTTTA	57.367	38.095	22.28	16.42	44.84	2.01
4185	4868	3.304257	TGAACACGCATTGCATGTTTAC	58.696	40.909	22.28	12.28	44.84	2.01
4186	4869	1.962412	ACACGCATTGCATGTTTACG	58.038	45.000	4.21	0.00	27.84	3.18
4286	8007	6.715464	CCAATGTTCGATTACATACTGAACC	58.285	40.000	3.24	0.00	37.76	3.62
4332	8066	7.043986	CGTTAACACTGCATCTGTATCTTACTC	60.044	40.741	6.39	0.00	0.00	2.59
4406	8143	2.042686	TCCTGGCAATGCTGTGATAC	57.957	50.000	4.82	0.00	0.00	2.24
4408	8145	2.771372	TCCTGGCAATGCTGTGATACTA	59.229	45.455	4.82	0.00	0.00	1.82
4409	8146	2.874701	CCTGGCAATGCTGTGATACTAC	59.125	50.000	4.82	0.00	0.00	2.73
4411	8148	3.797039	TGGCAATGCTGTGATACTACTC	58.203	45.455	4.82	0.00	0.00	2.59
4412	8149	3.134458	GGCAATGCTGTGATACTACTCC	58.866	50.000	4.82	0.00	0.00	3.85
4413	8150	2.797156	GCAATGCTGTGATACTACTCCG	59.203	50.000	0.00	0.00	0.00	4.63
4475	8214	7.238933	CCCTTTCCCCCATAAATGATAGTACTA	59.761	40.741	4.77	4.77	0.00	1.82
4478	9175	9.901651	TTTCCCCCATAAATGATAGTACTACTA	57.098	33.333	4.31	0.00	34.82	1.82
4505	9202	5.068460	AGCTCTTTCTAATACAGAGATGCGT	59.932	40.000	0.00	0.00	36.88	5.24
4553	11106	3.000727	GGTAACTAATCACGCAACTGCT	58.999	45.455	0.00	0.00	39.32	4.24
4568	11121	4.271291	GCAACTGCTAGGATTACTTGCTAC	59.729	45.833	3.98	0.00	46.23	3.58
4569	11122	5.665459	CAACTGCTAGGATTACTTGCTACT	58.335	41.667	3.98	0.00	46.23	2.57
4570	11123	6.683110	GCAACTGCTAGGATTACTTGCTACTA	60.683	42.308	3.98	0.00	46.23	1.82
4571	11124	6.642707	ACTGCTAGGATTACTTGCTACTAG	57.357	41.667	3.98	0.00	46.23	2.57
4573	11132	6.834451	ACTGCTAGGATTACTTGCTACTAGAA	59.166	38.462	3.98	0.00	46.23	2.10
4600	11159	0.036010	ACTCAGCATTCCTGTTCGGG	60.036	55.000	0.00	0.00	42.38	5.14
4643	11206	2.040278	GGGATTACCATGGCAGATAGCA	59.960	50.000	13.04	0.00	42.11	3.49
4823	11399	0.743345	CCGCCTAGGGTACAAACTGC	60.743	60.000	11.72	0.00	35.97	4.40
4832	11408	1.026584	GTACAAACTGCCACCCGTTT	58.973	50.000	0.00	0.00	33.92	3.60
4836	11412	3.802852	AACTGCCACCCGTTTCCCC	62.803	63.158	0.00	0.00	0.00	4.81
4889	11469	6.533730	TGAGAAAAGGATAAGCAAGAGTTGA	58.466	36.000	0.00	0.00	0.00	3.18
4928	11509	1.216178	CGGCCTCCCTGCAAAAATG	59.784	57.895	0.00	0.00	0.00	2.32
4933	11514	0.883833	CTCCCTGCAAAAATGAGCGT	59.116	50.000	0.00	0.00	0.00	5.07
4966	11581	4.083696	ACAAACAATACGACGAATTGGTCC	60.084	41.667	14.13	0.00	38.41	4.46
5084	12610	1.946768	CCTCTCACGAAAGCAAAACCA	59.053	47.619	0.00	0.00	0.00	3.67
5106	12632	2.174639	TGCTTCTCACAGGAGGGAAAAA	59.825	45.455	0.00	0.00	41.69	1.94
5107	12633	3.181429	TGCTTCTCACAGGAGGGAAAAAT	60.181	43.478	0.00	0.00	41.69	1.82
5108	12634	3.192212	GCTTCTCACAGGAGGGAAAAATG	59.808	47.826	0.00	0.00	41.69	2.32
5109	12635	2.795329	TCTCACAGGAGGGAAAAATGC	58.205	47.619	0.00	0.00	41.69	3.56
5111	12637	3.094572	CTCACAGGAGGGAAAAATGCAT	58.905	45.455	0.00	0.00	37.51	3.96
5114	12640	4.347583	TCACAGGAGGGAAAAATGCATTTT	59.652	37.500	27.73	27.73	43.85	1.82
5115	12641	7.287661	CTCACAGGAGGGAAAAATGCATTTTC	61.288	42.308	31.78	24.14	42.62	2.29

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
5	6	4.068599	GGCAGCAAATATCTAAGTCTCCC	58.931	47.826	0.00	0.00	0.00	4.30
116	117	3.818961	TTGTAGTACACGACTCTTCCG	57.181	47.619	1.43	0.00	39.81	4.30
138	139	2.619074	GCTTGGACCACTAAAGGATGCT	60.619	50.000	0.00	0.00	0.00	3.79
270	271	6.145534	CGTTGACAGAATTGCTAACTGAGTAA	59.854	38.462	11.13	0.00	35.85	2.24
384	385	7.274686	CGTGGTGTTAATGATATTTTGGGAAAC	59.725	37.037	0.00	0.00	0.00	2.78
481	488	2.084546	GGCGTGGTTTAAATGCTCTCT	58.915	47.619	0.00	0.00	0.00	3.10
767	865	8.141298	TCACCACCTATATTTCTACTGTTTGA	57.859	34.615	0.00	0.00	0.00	2.69
1598	1767	0.395312	TTTGAAGGTGTCCGGGTCTC	59.605	55.000	0.00	0.00	0.00	3.36
1636	1808	4.974645	AGGTTGTCTCACCATAGTTGAA	57.025	40.909	0.00	0.00	39.62	2.69
1643	1815	3.480470	CAAGTGAAGGTTGTCTCACCAT	58.520	45.455	0.00	0.00	39.62	3.55
1719	1891	3.243704	GCCTTTGTGTGCTAAATCCACAA	60.244	43.478	0.00	0.00	44.01	3.33
2261	2873	9.817809	TCATTCAGCGACTAGTAAGAAAAATAT	57.182	29.630	0.00	0.00	0.00	1.28
2402	3029	4.249661	GGGATGAAAGAACTCTGAGTGAC	58.750	47.826	11.71	8.90	0.00	3.67
2693	3361	5.812652	TGACACGTGGTTTCAAGTATTTTC	58.187	37.500	21.57	3.30	33.98	2.29
3546	4229	6.780457	AGCAATATCTAGCATTTTGTTGGT	57.220	33.333	0.00	0.00	0.00	3.67
3707	4390	0.469705	TGCTTTGGTCCCTTGCACAT	60.470	50.000	0.00	0.00	0.00	3.21
4138	4821	2.760634	TGTCGTGTTCTGTGGCATAT	57.239	45.000	0.00	0.00	0.00	1.78
4238	4929	4.265073	CAAGCTAGTGCCAAGGAATTACT	58.735	43.478	0.00	0.00	40.80	2.24
4286	8007	2.159393	CGGTACTGCAAAATCCCATGTG	60.159	50.000	0.00	0.00	0.00	3.21
4352	8088	3.450578	TCCAGTGTCGTGTGTTTCTAAC	58.549	45.455	0.00	0.00	0.00	2.34
4409	8146	5.902681	TGACTGGTTAAGATTCATACGGAG	58.097	41.667	0.00	0.00	0.00	4.63
4411	8148	6.761242	TCAATGACTGGTTAAGATTCATACGG	59.239	38.462	0.00	0.00	0.00	4.02
4412	8149	7.770801	TCAATGACTGGTTAAGATTCATACG	57.229	36.000	0.00	0.00	0.00	3.06
4413	8150	9.113838	ACATCAATGACTGGTTAAGATTCATAC	57.886	33.333	0.00	0.00	0.00	2.39
4478	9175	7.812191	CGCATCTCTGTATTAGAAAGAGCTTAT	59.188	37.037	0.00	0.00	37.86	1.73
4530	11074	4.178540	GCAGTTGCGTGATTAGTTACCTA	58.821	43.478	0.00	0.00	0.00	3.08
4532	11076	3.385079	GCAGTTGCGTGATTAGTTACC	57.615	47.619	0.00	0.00	0.00	2.85
4568	11121	7.277539	CAGGAATGCTGAGTTTCTACTTTCTAG	59.722	40.741	0.00	0.00	33.84	2.43
4569	11122	7.099764	CAGGAATGCTGAGTTTCTACTTTCTA	58.900	38.462	0.00	0.00	33.84	2.10
4570	11123	5.936956	CAGGAATGCTGAGTTTCTACTTTCT	59.063	40.000	0.00	0.00	33.84	2.52
4571	11124	5.703130	ACAGGAATGCTGAGTTTCTACTTTC	59.297	40.000	9.20	0.00	33.84	2.62
4573	11132	5.234466	ACAGGAATGCTGAGTTTCTACTT	57.766	39.130	9.20	0.00	33.84	2.24
4609	11168	2.359249	GGTAATCCCATTTGCTCCCCTT	60.359	50.000	0.00	0.00	0.00	3.95
4610	11169	1.217942	GGTAATCCCATTTGCTCCCCT	59.782	52.381	0.00	0.00	0.00	4.79
4621	11180	2.040278	GCTATCTGCCATGGTAATCCCA	59.960	50.000	14.67	0.00	41.29	4.37
4643	11206	2.039624	ACCTGGACTCCGGCAGAT	59.960	61.111	8.24	0.00	0.00	2.90
4691	11267	3.997064	CTGGGCTTGCTCCTCGTCG	62.997	68.421	0.00	0.00	0.00	5.12
4802	11378	1.812507	GTTTGTACCCTAGGCGGCG	60.813	63.158	2.05	0.51	0.00	6.46
4823	11399	1.906333	CCAAAGGGGAAACGGGTGG	60.906	63.158	0.00	0.00	40.01	4.61
4832	11408	8.637699	AAAAGCTCTGGTTTATCCAAAGGGGA	62.638	42.308	0.00	0.00	46.59	4.81
4863	11439	6.365970	ACTCTTGCTTATCCTTTTCTCAGA	57.634	37.500	0.00	0.00	0.00	3.27
4864	11440	6.652481	TCAACTCTTGCTTATCCTTTTCTCAG	59.348	38.462	0.00	0.00	0.00	3.35
4872	11452	2.843113	AGGCTCAACTCTTGCTTATCCT	59.157	45.455	0.00	0.00	0.00	3.24
4889	11469	0.962356	CCCATCTCACGCAAAAGGCT	60.962	55.000	0.00	0.00	41.67	4.58
4966	11581	1.368641	TCCCAGTGCGATCAATTTCG	58.631	50.000	0.00	0.00	41.99	3.46
5039	12565	1.470979	GCCGTGCCTCTCGAAAATAGA	60.471	52.381	0.00	0.00	0.00	1.98
5041	12567	0.461339	GGCCGTGCCTCTCGAAAATA	60.461	55.000	7.58	0.00	46.69	1.40
5067	12593	2.053627	GCATGGTTTTGCTTTCGTGAG	58.946	47.619	0.00	0.00	39.57	3.51
5084	12610	1.661463	TTCCCTCCTGTGAGAAGCAT	58.339	50.000	0.00	0.00	41.42	3.79
5106	12632	6.690530	TCTCGGAAATGAAAAGAAAATGCAT	58.309	32.000	0.00	0.00	0.00	3.96
5107	12633	6.083098	TCTCGGAAATGAAAAGAAAATGCA	57.917	33.333	0.00	0.00	0.00	3.96
5108	12634	5.574443	CCTCTCGGAAATGAAAAGAAAATGC	59.426	40.000	0.00	0.00	0.00	3.56
5109	12635	5.574443	GCCTCTCGGAAATGAAAAGAAAATG	59.426	40.000	0.00	0.00	0.00	2.32
5111	12637	4.582656	TGCCTCTCGGAAATGAAAAGAAAA	59.417	37.500	0.00	0.00	0.00	2.29
5114	12640	3.074412	GTGCCTCTCGGAAATGAAAAGA	58.926	45.455	0.00	0.00	0.00	2.52
5115	12641	2.159653	CGTGCCTCTCGGAAATGAAAAG	60.160	50.000	0.00	0.00	0.00	2.27
5136	12662	0.318699	GAGGCACGGTTTTTGCTTCC	60.319	55.000	0.00	0.00	39.53	3.46

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.