Multiple sequence alignment - TraesCS3A01G016600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G016600 chr3A 100.000 5039 0 0 1 5039 10827664 10822626 0.000000e+00 9306.0
1 TraesCS3A01G016600 chr3A 92.394 2222 128 19 1894 4093 11459161 11456959 0.000000e+00 3129.0
2 TraesCS3A01G016600 chr3A 80.482 2695 382 83 1043 3651 11411597 11408961 0.000000e+00 1930.0
3 TraesCS3A01G016600 chr3A 85.463 1252 172 8 2450 3693 11001149 10999900 0.000000e+00 1295.0
4 TraesCS3A01G016600 chr3A 87.379 515 20 24 4335 4833 11456757 11456272 2.650000e-152 549.0
5 TraesCS3A01G016600 chr3A 83.890 509 69 8 1 497 11412454 11411947 1.640000e-129 473.0
6 TraesCS3A01G016600 chr3A 83.051 472 74 4 1436 1901 11464858 11464387 1.680000e-114 424.0
7 TraesCS3A01G016600 chr3A 93.522 247 16 0 4047 4293 11457100 11456854 7.970000e-98 368.0
8 TraesCS3A01G016600 chr3A 83.582 335 48 7 2 331 11381957 11381625 1.760000e-79 307.0
9 TraesCS3A01G016600 chr3A 92.627 217 10 3 4824 5039 11430391 11430180 1.760000e-79 307.0
10 TraesCS3A01G016600 chr3A 85.425 247 32 3 3895 4141 10823719 10823477 2.330000e-63 254.0
11 TraesCS3A01G016600 chr3A 85.425 247 32 3 3946 4188 10823770 10823524 2.330000e-63 254.0
12 TraesCS3A01G016600 chr3A 87.940 199 20 3 3895 4093 10823671 10823477 1.090000e-56 231.0
13 TraesCS3A01G016600 chr3A 87.940 199 20 3 3994 4188 10823770 10823572 1.090000e-56 231.0
14 TraesCS3A01G016600 chr3A 88.406 138 15 1 4004 4141 11457095 11456959 1.120000e-36 165.0
15 TraesCS3A01G016600 chr3A 91.837 98 5 3 4094 4188 11457103 11457006 3.160000e-27 134.0
16 TraesCS3A01G016600 chr3A 86.408 103 10 3 3895 3997 10823575 10823477 5.330000e-20 110.0
17 TraesCS3A01G016600 chr3A 86.408 103 10 3 4090 4188 10823770 10823668 5.330000e-20 110.0
18 TraesCS3A01G016600 chr3A 88.136 59 6 1 3895 3953 10823527 10823470 9.050000e-08 69.4
19 TraesCS3A01G016600 chr3A 88.136 59 6 1 4138 4195 10823770 10823712 9.050000e-08 69.4
20 TraesCS3A01G016600 chrUn 90.682 3724 276 46 1 3695 34654273 34657954 0.000000e+00 4889.0
21 TraesCS3A01G016600 chrUn 84.253 1848 233 28 1890 3698 214330148 214328320 0.000000e+00 1748.0
22 TraesCS3A01G016600 chrUn 86.069 1249 158 10 2433 3676 35316301 35317538 0.000000e+00 1328.0
23 TraesCS3A01G016600 chrUn 84.634 1217 159 22 2447 3651 36344401 36345601 0.000000e+00 1186.0
24 TraesCS3A01G016600 chrUn 84.679 1214 158 22 2450 3651 214890601 214889404 0.000000e+00 1186.0
25 TraesCS3A01G016600 chrUn 82.268 1173 150 38 1042 2195 35314960 35316093 0.000000e+00 961.0
26 TraesCS3A01G016600 chrUn 84.123 907 120 13 1203 2101 222091251 222090361 0.000000e+00 856.0
27 TraesCS3A01G016600 chrUn 79.393 1087 151 38 1043 2087 36342988 36344043 0.000000e+00 699.0
28 TraesCS3A01G016600 chrUn 79.220 1102 156 38 1043 2102 214892017 214890947 0.000000e+00 699.0
29 TraesCS3A01G016600 chrUn 84.902 510 63 9 1 497 267788510 267788002 2.090000e-138 503.0
30 TraesCS3A01G016600 chrUn 84.902 510 63 9 1 497 268799187 268799695 2.090000e-138 503.0
31 TraesCS3A01G016600 chrUn 83.830 470 60 4 2 462 35313749 35314211 2.790000e-117 433.0
32 TraesCS3A01G016600 chrUn 81.375 349 50 8 593 933 35314472 35314813 2.310000e-68 270.0
33 TraesCS3A01G016600 chr3D 97.344 979 24 2 965 1943 5027705 5026729 0.000000e+00 1663.0
34 TraesCS3A01G016600 chr3D 85.665 1151 153 8 2530 3677 4985067 4983926 0.000000e+00 1201.0
35 TraesCS3A01G016600 chr3D 84.069 1224 172 16 2437 3651 5007165 5005956 0.000000e+00 1158.0
36 TraesCS3A01G016600 chr3D 86.207 406 52 3 1 403 28329011 28329415 2.150000e-118 436.0
37 TraesCS3A01G016600 chr3D 81.443 388 61 9 19 402 5013675 5013295 1.760000e-79 307.0
38 TraesCS3A01G016600 chr4B 82.014 139 24 1 4860 4997 172727163 172727301 3.190000e-22 117.0
39 TraesCS3A01G016600 chr7A 100.000 29 0 0 4688 4716 643858927 643858899 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G016600 chr3A 10822626 10827664 5038 True 9306.0 9306 100.0000 1 5039 1 chr3A.!!$R1 5038
1 TraesCS3A01G016600 chr3A 10999900 11001149 1249 True 1295.0 1295 85.4630 2450 3693 1 chr3A.!!$R2 1243
2 TraesCS3A01G016600 chr3A 11408961 11412454 3493 True 1201.5 1930 82.1860 1 3651 2 chr3A.!!$R7 3650
3 TraesCS3A01G016600 chr3A 11456272 11459161 2889 True 869.0 3129 90.7076 1894 4833 5 chr3A.!!$R8 2939
4 TraesCS3A01G016600 chrUn 34654273 34657954 3681 False 4889.0 4889 90.6820 1 3695 1 chrUn.!!$F1 3694
5 TraesCS3A01G016600 chrUn 214328320 214330148 1828 True 1748.0 1748 84.2530 1890 3698 1 chrUn.!!$R1 1808
6 TraesCS3A01G016600 chrUn 36342988 36345601 2613 False 942.5 1186 82.0135 1043 3651 2 chrUn.!!$F4 2608
7 TraesCS3A01G016600 chrUn 214889404 214892017 2613 True 942.5 1186 81.9495 1043 3651 2 chrUn.!!$R4 2608
8 TraesCS3A01G016600 chrUn 222090361 222091251 890 True 856.0 856 84.1230 1203 2101 1 chrUn.!!$R2 898
9 TraesCS3A01G016600 chrUn 35313749 35317538 3789 False 748.0 1328 83.3855 2 3676 4 chrUn.!!$F3 3674
10 TraesCS3A01G016600 chrUn 267788002 267788510 508 True 503.0 503 84.9020 1 497 1 chrUn.!!$R3 496
11 TraesCS3A01G016600 chrUn 268799187 268799695 508 False 503.0 503 84.9020 1 497 1 chrUn.!!$F2 496
12 TraesCS3A01G016600 chr3D 5026729 5027705 976 True 1663.0 1663 97.3440 965 1943 1 chr3D.!!$R4 978
13 TraesCS3A01G016600 chr3D 4983926 4985067 1141 True 1201.0 1201 85.6650 2530 3677 1 chr3D.!!$R1 1147
14 TraesCS3A01G016600 chr3D 5005956 5007165 1209 True 1158.0 1158 84.0690 2437 3651 1 chr3D.!!$R2 1214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 1020 2.084546 GGCGTGGTTTAAATGCTCTCT 58.915 47.619 0.00 0.0 0.0 3.10 F
1645 1900 1.138859 TGGGTGTGGCTATCGATCTTG 59.861 52.381 0.00 0.0 0.0 3.02 F
2796 3206 0.109781 GCAATGTTCATGTCGCGGTT 60.110 50.000 6.13 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 2487 1.087771 CACCGAATCCCACGCCTTAC 61.088 60.0 0.00 0.00 0.0 2.34 R
3192 3602 2.006805 ACCCTATAGTTCCCCGTAGC 57.993 55.0 0.00 0.00 0.0 3.58 R
4071 4522 0.174845 TAGTTCCAATGTCTCGGCCG 59.825 55.0 22.12 22.12 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
559 621 8.141298 TCACCACCTATATTTCTACTGTTTGA 57.859 34.615 0.00 0.00 0.00 2.69
845 1020 2.084546 GGCGTGGTTTAAATGCTCTCT 58.915 47.619 0.00 0.00 0.00 3.10
942 1157 7.274686 CGTGGTGTTAATGATATTTTGGGAAAC 59.725 37.037 0.00 0.00 0.00 2.78
1320 1570 4.708177 TGGCAGCAAATATCTAAGTCTCC 58.292 43.478 0.00 0.00 0.00 3.71
1451 1706 2.138320 CACGTCTGTGCTTCTGTGAAT 58.862 47.619 0.00 0.00 39.67 2.57
1645 1900 1.138859 TGGGTGTGGCTATCGATCTTG 59.861 52.381 0.00 0.00 0.00 3.02
1710 1965 4.740268 CGGTGCAACTTACTATGTGTCTA 58.260 43.478 0.00 0.00 36.74 2.59
1863 2145 2.380084 TACTCGGGCTTGCTTTGTAG 57.620 50.000 0.00 0.00 0.00 2.74
2102 2432 6.587608 GTGGATTTGCTGTTCTATTTCCTTTG 59.412 38.462 0.00 0.00 0.00 2.77
2106 2436 6.808008 TTGCTGTTCTATTTCCTTTGAGAG 57.192 37.500 0.00 0.00 0.00 3.20
2107 2437 4.697352 TGCTGTTCTATTTCCTTTGAGAGC 59.303 41.667 0.00 0.00 0.00 4.09
2160 2514 2.418197 CGTGGGATTCGGTGAGTTACAT 60.418 50.000 0.00 0.00 0.00 2.29
2244 2646 6.114767 TCGAAAACTGTTAGGGTACACTTTT 58.885 36.000 1.15 0.00 31.30 2.27
2366 2768 0.391661 GGGAGATTTCGCAGACTGCA 60.392 55.000 26.32 11.38 45.36 4.41
2444 2846 8.718102 ACTAATTACTATGTGGATTGTGACAC 57.282 34.615 0.00 0.00 38.08 3.67
2796 3206 0.109781 GCAATGTTCATGTCGCGGTT 60.110 50.000 6.13 0.00 0.00 4.44
2809 3219 2.022195 TCGCGGTTAAGATGCTAGACT 58.978 47.619 6.13 0.00 0.00 3.24
2875 3285 1.145531 CCATTGGCAGGATCCACCATA 59.854 52.381 23.13 15.57 42.04 2.74
2958 3368 3.584848 AGTACATGCCTCAAGGTTCTCTT 59.415 43.478 0.00 0.00 37.57 2.85
3075 3485 2.821969 GGGTTGTGACATGCAGATTCTT 59.178 45.455 0.00 0.00 0.00 2.52
3192 3602 2.307309 TTTTGTGCCGTCGAGAGCG 61.307 57.895 0.00 0.00 39.35 5.03
3512 3927 3.559657 ATAGGCCGACGATGAGCGC 62.560 63.158 0.00 0.00 46.04 5.92
3716 4137 4.122046 AGCTGGTGCATTTTTCTTGAAAC 58.878 39.130 0.00 0.00 42.74 2.78
3722 4143 5.526846 GGTGCATTTTTCTTGAAACAATGGA 59.473 36.000 19.61 17.08 0.00 3.41
3744 4169 6.710295 TGGATGTACATATGGTTGTATCAAGC 59.290 38.462 8.71 4.97 34.76 4.01
3773 4198 2.672961 TCTGCTGTATTTCCGGAGTG 57.327 50.000 3.34 0.00 0.00 3.51
3793 4218 6.183360 GGAGTGGTGTGTACATGTAATAGCTA 60.183 42.308 7.25 0.00 0.00 3.32
3881 4315 1.297689 CTGCTCCTGGTGCTGCTTA 59.702 57.895 20.19 0.41 0.00 3.09
3882 4316 0.107312 CTGCTCCTGGTGCTGCTTAT 60.107 55.000 20.19 0.00 0.00 1.73
3884 4318 1.559219 TGCTCCTGGTGCTGCTTATTA 59.441 47.619 20.19 0.00 0.00 0.98
3885 4319 2.026356 TGCTCCTGGTGCTGCTTATTAA 60.026 45.455 20.19 0.00 0.00 1.40
3886 4320 2.615912 GCTCCTGGTGCTGCTTATTAAG 59.384 50.000 13.24 0.00 0.00 1.85
3888 4322 3.873910 TCCTGGTGCTGCTTATTAAGTC 58.126 45.455 0.00 0.00 0.00 3.01
3891 4325 4.265073 CTGGTGCTGCTTATTAAGTCCTT 58.735 43.478 0.00 0.00 0.00 3.36
3892 4326 5.428253 CTGGTGCTGCTTATTAAGTCCTTA 58.572 41.667 0.00 0.00 0.00 2.69
3893 4327 5.428253 TGGTGCTGCTTATTAAGTCCTTAG 58.572 41.667 0.00 0.00 0.00 2.18
3894 4328 5.045869 TGGTGCTGCTTATTAAGTCCTTAGT 60.046 40.000 0.00 0.00 0.00 2.24
3895 4329 6.155565 TGGTGCTGCTTATTAAGTCCTTAGTA 59.844 38.462 0.00 0.00 0.00 1.82
3896 4330 7.046033 GGTGCTGCTTATTAAGTCCTTAGTAA 58.954 38.462 0.00 3.11 0.00 2.24
3897 4331 7.715686 GGTGCTGCTTATTAAGTCCTTAGTAAT 59.284 37.037 0.00 0.00 30.44 1.89
3898 4332 8.766151 GTGCTGCTTATTAAGTCCTTAGTAATC 58.234 37.037 0.00 1.31 30.44 1.75
3899 4333 7.652105 TGCTGCTTATTAAGTCCTTAGTAATCG 59.348 37.037 0.00 0.00 30.44 3.34
3901 4335 9.182933 CTGCTTATTAAGTCCTTAGTAATCGAC 57.817 37.037 5.38 3.21 30.44 4.20
3908 4342 7.893124 AAGTCCTTAGTAATCGACATTAGGA 57.107 36.000 11.03 0.00 32.09 2.94
3909 4343 7.274603 AGTCCTTAGTAATCGACATTAGGAC 57.725 40.000 18.32 18.32 44.45 3.85
3910 4344 7.061688 AGTCCTTAGTAATCGACATTAGGACT 58.938 38.462 20.99 20.99 46.66 3.85
3923 4374 8.573885 TCGACATTAGGACTTAATAATCATCGT 58.426 33.333 0.00 0.00 33.21 3.73
3929 4380 4.304110 GACTTAATAATCATCGTCGGCCA 58.696 43.478 2.24 0.00 0.00 5.36
3931 4382 4.750098 ACTTAATAATCATCGTCGGCCAAG 59.250 41.667 2.24 0.00 0.00 3.61
3932 4383 3.469008 AATAATCATCGTCGGCCAAGA 57.531 42.857 2.24 0.00 0.00 3.02
3933 4384 2.218953 TAATCATCGTCGGCCAAGAC 57.781 50.000 2.24 1.44 37.76 3.01
3934 4385 0.249120 AATCATCGTCGGCCAAGACA 59.751 50.000 2.24 0.00 40.98 3.41
3935 4386 0.465705 ATCATCGTCGGCCAAGACAT 59.534 50.000 2.24 0.00 40.98 3.06
3936 4387 0.249120 TCATCGTCGGCCAAGACATT 59.751 50.000 2.24 0.00 40.98 2.71
3937 4388 0.374758 CATCGTCGGCCAAGACATTG 59.625 55.000 2.24 0.00 40.98 2.82
3938 4389 0.036388 ATCGTCGGCCAAGACATTGT 60.036 50.000 2.24 0.00 40.98 2.71
3939 4390 0.604073 TCGTCGGCCAAGACATTGTA 59.396 50.000 2.24 0.00 40.98 2.41
3940 4391 0.719465 CGTCGGCCAAGACATTGTAC 59.281 55.000 2.24 0.00 40.98 2.90
3941 4392 1.671850 CGTCGGCCAAGACATTGTACT 60.672 52.381 2.24 0.00 40.98 2.73
3942 4393 2.000447 GTCGGCCAAGACATTGTACTC 59.000 52.381 2.24 0.00 40.65 2.59
3943 4394 1.621317 TCGGCCAAGACATTGTACTCA 59.379 47.619 2.24 0.00 34.39 3.41
3944 4395 1.732259 CGGCCAAGACATTGTACTCAC 59.268 52.381 2.24 0.00 34.39 3.51
3945 4396 2.612972 CGGCCAAGACATTGTACTCACT 60.613 50.000 2.24 0.00 34.39 3.41
3946 4397 3.368013 CGGCCAAGACATTGTACTCACTA 60.368 47.826 2.24 0.00 34.39 2.74
3947 4398 4.575885 GGCCAAGACATTGTACTCACTAA 58.424 43.478 0.00 0.00 34.39 2.24
3948 4399 5.186198 GGCCAAGACATTGTACTCACTAAT 58.814 41.667 0.00 0.00 34.39 1.73
3949 4400 5.294552 GGCCAAGACATTGTACTCACTAATC 59.705 44.000 0.00 0.00 34.39 1.75
3958 4409 7.921214 ACATTGTACTCACTAATCGACATTAGG 59.079 37.037 9.89 1.14 44.22 2.69
3979 4430 9.939802 ATTAGGACTTAATAATCATAACCGACC 57.060 33.333 0.00 0.00 30.12 4.79
3982 4433 6.585322 GGACTTAATAATCATAACCGACCGAG 59.415 42.308 0.00 0.00 0.00 4.63
3983 4434 7.281040 ACTTAATAATCATAACCGACCGAGA 57.719 36.000 0.00 0.00 0.00 4.04
3984 4435 7.144000 ACTTAATAATCATAACCGACCGAGAC 58.856 38.462 0.00 0.00 0.00 3.36
3985 4436 5.524971 AATAATCATAACCGACCGAGACA 57.475 39.130 0.00 0.00 0.00 3.41
3986 4437 5.723672 ATAATCATAACCGACCGAGACAT 57.276 39.130 0.00 0.00 0.00 3.06
3987 4438 4.402056 AATCATAACCGACCGAGACATT 57.598 40.909 0.00 0.00 0.00 2.71
3988 4439 5.524971 AATCATAACCGACCGAGACATTA 57.475 39.130 0.00 0.00 0.00 1.90
3989 4440 4.563337 TCATAACCGACCGAGACATTAG 57.437 45.455 0.00 0.00 0.00 1.73
3990 4441 4.201657 TCATAACCGACCGAGACATTAGA 58.798 43.478 0.00 0.00 0.00 2.10
3991 4442 4.641541 TCATAACCGACCGAGACATTAGAA 59.358 41.667 0.00 0.00 0.00 2.10
3992 4443 2.935481 ACCGACCGAGACATTAGAAC 57.065 50.000 0.00 0.00 0.00 3.01
3993 4444 2.444421 ACCGACCGAGACATTAGAACT 58.556 47.619 0.00 0.00 0.00 3.01
3994 4445 3.614092 ACCGACCGAGACATTAGAACTA 58.386 45.455 0.00 0.00 0.00 2.24
3995 4446 4.012374 ACCGACCGAGACATTAGAACTAA 58.988 43.478 0.00 0.00 0.00 2.24
3996 4447 4.643784 ACCGACCGAGACATTAGAACTAAT 59.356 41.667 1.76 1.76 36.27 1.73
3997 4448 5.126707 ACCGACCGAGACATTAGAACTAATT 59.873 40.000 4.57 0.00 33.79 1.40
3998 4449 5.459107 CCGACCGAGACATTAGAACTAATTG 59.541 44.000 4.57 4.26 33.79 2.32
3999 4450 6.263344 CGACCGAGACATTAGAACTAATTGA 58.737 40.000 4.57 0.00 33.79 2.57
4000 4451 6.415280 CGACCGAGACATTAGAACTAATTGAG 59.585 42.308 4.57 0.00 33.79 3.02
4001 4452 7.406031 ACCGAGACATTAGAACTAATTGAGA 57.594 36.000 4.57 0.00 33.79 3.27
4002 4453 7.837863 ACCGAGACATTAGAACTAATTGAGAA 58.162 34.615 4.57 0.00 33.79 2.87
4003 4454 8.478877 ACCGAGACATTAGAACTAATTGAGAAT 58.521 33.333 4.57 0.00 33.79 2.40
4004 4455 9.967346 CCGAGACATTAGAACTAATTGAGAATA 57.033 33.333 4.57 0.00 33.79 1.75
4022 4473 9.477484 TTGAGAATAGGACTTAATAATCTTCGC 57.523 33.333 0.00 0.00 0.00 4.70
4023 4474 8.088981 TGAGAATAGGACTTAATAATCTTCGCC 58.911 37.037 0.00 0.00 0.00 5.54
4024 4475 7.091443 AGAATAGGACTTAATAATCTTCGCCG 58.909 38.462 0.00 0.00 0.00 6.46
4025 4476 3.991367 AGGACTTAATAATCTTCGCCGG 58.009 45.455 0.00 0.00 0.00 6.13
4026 4477 2.479275 GGACTTAATAATCTTCGCCGGC 59.521 50.000 19.07 19.07 0.00 6.13
4027 4478 2.479275 GACTTAATAATCTTCGCCGGCC 59.521 50.000 23.46 2.84 0.00 6.13
4028 4479 1.459592 CTTAATAATCTTCGCCGGCCG 59.540 52.381 23.46 21.04 38.61 6.13
4029 4480 0.320073 TAATAATCTTCGCCGGCCGG 60.320 55.000 40.26 40.26 37.59 6.13
4065 4516 9.978044 ACTAATCGACATTAGGACTTAATAACC 57.022 33.333 9.89 0.00 44.22 2.85
4066 4517 9.976511 CTAATCGACATTAGGACTTAATAACCA 57.023 33.333 0.00 0.00 38.50 3.67
4068 4519 9.490379 AATCGACATTAGGACTTAATAACCATC 57.510 33.333 0.00 0.00 30.75 3.51
4069 4520 7.143340 TCGACATTAGGACTTAATAACCATCG 58.857 38.462 0.00 0.00 30.75 3.84
4070 4521 6.128902 CGACATTAGGACTTAATAACCATCGC 60.129 42.308 0.00 0.00 30.75 4.58
4071 4522 5.995897 ACATTAGGACTTAATAACCATCGCC 59.004 40.000 0.00 0.00 30.75 5.54
4072 4523 3.107642 AGGACTTAATAACCATCGCCG 57.892 47.619 0.00 0.00 0.00 6.46
4073 4524 2.140717 GGACTTAATAACCATCGCCGG 58.859 52.381 0.00 0.00 0.00 6.13
4074 4525 1.529865 GACTTAATAACCATCGCCGGC 59.470 52.381 19.07 19.07 0.00 6.13
4075 4526 0.872388 CTTAATAACCATCGCCGGCC 59.128 55.000 23.46 2.84 0.00 6.13
4076 4527 0.881159 TTAATAACCATCGCCGGCCG 60.881 55.000 23.46 21.04 38.61 6.13
4084 4535 4.812476 TCGCCGGCCGAGACATTG 62.812 66.667 30.73 9.14 41.89 2.82
4086 4537 4.467084 GCCGGCCGAGACATTGGA 62.467 66.667 30.73 0.00 30.33 3.53
4087 4538 2.267642 CCGGCCGAGACATTGGAA 59.732 61.111 30.73 0.00 30.33 3.53
4088 4539 2.106683 CCGGCCGAGACATTGGAAC 61.107 63.158 30.73 0.00 30.33 3.62
4089 4540 1.079127 CGGCCGAGACATTGGAACT 60.079 57.895 24.07 0.00 30.33 3.01
4090 4541 0.174845 CGGCCGAGACATTGGAACTA 59.825 55.000 24.07 0.00 30.33 2.24
4091 4542 1.404986 CGGCCGAGACATTGGAACTAA 60.405 52.381 24.07 0.00 30.33 2.24
4092 4543 2.741878 CGGCCGAGACATTGGAACTAAT 60.742 50.000 24.07 0.00 30.33 1.73
4093 4544 2.872858 GGCCGAGACATTGGAACTAATC 59.127 50.000 0.00 0.00 30.33 1.75
4094 4545 2.540101 GCCGAGACATTGGAACTAATCG 59.460 50.000 0.00 0.00 30.33 3.34
4095 4546 3.737047 GCCGAGACATTGGAACTAATCGA 60.737 47.826 0.00 0.00 30.33 3.59
4096 4547 4.045104 CCGAGACATTGGAACTAATCGAG 58.955 47.826 0.00 0.00 30.33 4.04
4097 4548 4.202020 CCGAGACATTGGAACTAATCGAGA 60.202 45.833 0.00 0.00 30.33 4.04
4098 4549 5.340803 CGAGACATTGGAACTAATCGAGAA 58.659 41.667 0.00 0.00 0.00 2.87
4099 4550 5.980116 CGAGACATTGGAACTAATCGAGAAT 59.020 40.000 0.00 0.00 0.00 2.40
4100 4551 7.139392 CGAGACATTGGAACTAATCGAGAATA 58.861 38.462 0.00 0.00 0.00 1.75
4101 4552 7.324856 CGAGACATTGGAACTAATCGAGAATAG 59.675 40.741 0.00 0.00 0.00 1.73
4102 4553 7.437748 AGACATTGGAACTAATCGAGAATAGG 58.562 38.462 0.00 0.00 0.00 2.57
4103 4554 7.287927 AGACATTGGAACTAATCGAGAATAGGA 59.712 37.037 0.00 0.00 0.00 2.94
4104 4555 7.210873 ACATTGGAACTAATCGAGAATAGGAC 58.789 38.462 0.00 0.00 0.00 3.85
4105 4556 7.070074 ACATTGGAACTAATCGAGAATAGGACT 59.930 37.037 0.00 0.00 0.00 3.85
4106 4557 7.419711 TTGGAACTAATCGAGAATAGGACTT 57.580 36.000 0.00 0.00 0.00 3.01
4107 4558 8.529424 TTGGAACTAATCGAGAATAGGACTTA 57.471 34.615 0.00 0.00 0.00 2.24
4108 4559 8.529424 TGGAACTAATCGAGAATAGGACTTAA 57.471 34.615 0.00 0.00 0.00 1.85
4109 4560 9.144298 TGGAACTAATCGAGAATAGGACTTAAT 57.856 33.333 0.00 0.00 0.00 1.40
4198 4649 9.350357 GAGATATTAAACTAATAATCGACCGCA 57.650 33.333 0.00 0.00 34.59 5.69
4247 4698 7.880059 TCAGTATAAATCTTCATGATCAGCG 57.120 36.000 0.09 0.00 33.57 5.18
4257 4708 1.134401 CATGATCAGCGGGTAACAGGT 60.134 52.381 0.09 0.00 45.69 4.00
4260 4711 1.755380 GATCAGCGGGTAACAGGTAGT 59.245 52.381 0.00 0.00 41.80 2.73
4293 4744 2.288273 GCGATTCCTACCTGCTATCGTT 60.288 50.000 0.00 0.00 40.00 3.85
4294 4745 3.309388 CGATTCCTACCTGCTATCGTTG 58.691 50.000 0.00 0.00 34.86 4.10
4295 4746 3.654414 GATTCCTACCTGCTATCGTTGG 58.346 50.000 0.00 0.00 0.00 3.77
4296 4747 2.154567 TCCTACCTGCTATCGTTGGT 57.845 50.000 0.00 0.00 36.66 3.67
4297 4748 2.029623 TCCTACCTGCTATCGTTGGTC 58.970 52.381 0.00 0.00 34.33 4.02
4298 4749 1.068741 CCTACCTGCTATCGTTGGTCC 59.931 57.143 0.00 0.00 34.33 4.46
4299 4750 1.754803 CTACCTGCTATCGTTGGTCCA 59.245 52.381 0.00 0.00 34.33 4.02
4300 4751 1.204146 ACCTGCTATCGTTGGTCCAT 58.796 50.000 0.00 0.00 0.00 3.41
4301 4752 1.134401 ACCTGCTATCGTTGGTCCATG 60.134 52.381 0.00 0.00 0.00 3.66
4302 4753 1.134401 CCTGCTATCGTTGGTCCATGT 60.134 52.381 0.00 0.00 0.00 3.21
4303 4754 1.935873 CTGCTATCGTTGGTCCATGTG 59.064 52.381 0.00 0.00 0.00 3.21
4304 4755 0.657840 GCTATCGTTGGTCCATGTGC 59.342 55.000 0.00 0.00 0.00 4.57
4305 4756 2.011548 GCTATCGTTGGTCCATGTGCA 61.012 52.381 0.00 0.00 0.00 4.57
4306 4757 2.355197 CTATCGTTGGTCCATGTGCAA 58.645 47.619 0.00 0.00 0.00 4.08
4307 4758 1.838112 ATCGTTGGTCCATGTGCAAT 58.162 45.000 0.00 0.00 0.00 3.56
4308 4759 1.164411 TCGTTGGTCCATGTGCAATC 58.836 50.000 0.00 0.00 0.00 2.67
4309 4760 0.179192 CGTTGGTCCATGTGCAATCG 60.179 55.000 0.00 0.00 0.00 3.34
4310 4761 0.171007 GTTGGTCCATGTGCAATCGG 59.829 55.000 0.00 0.00 0.00 4.18
4311 4762 1.594194 TTGGTCCATGTGCAATCGGC 61.594 55.000 0.00 0.00 45.13 5.54
4331 4782 3.488090 GCGCGGTAGGTGACTTGC 61.488 66.667 8.83 0.00 43.67 4.01
4332 4783 2.813908 CGCGGTAGGTGACTTGCC 60.814 66.667 0.00 0.00 43.67 4.52
4384 4905 8.567948 ACAGTCTTGTCTTACACAAATTATTGG 58.432 33.333 0.00 0.00 44.71 3.16
4385 4906 7.538678 CAGTCTTGTCTTACACAAATTATTGGC 59.461 37.037 0.00 0.00 44.71 4.52
4420 4941 1.841277 ACTTGGTGGGTTACTGTCACA 59.159 47.619 0.00 0.00 33.45 3.58
4423 4944 3.367646 TGGTGGGTTACTGTCACAAAA 57.632 42.857 0.00 0.00 33.45 2.44
4425 4946 3.697045 TGGTGGGTTACTGTCACAAAAAG 59.303 43.478 0.00 0.00 33.45 2.27
4544 5065 2.159382 CGGCCGGCCAATAGATTAAAT 58.841 47.619 42.78 0.00 35.37 1.40
4575 5096 2.777094 TGCCTCACATCAACGAATCAA 58.223 42.857 0.00 0.00 0.00 2.57
4602 5123 6.961042 TCCATATGCATATCCTAATCAAGCA 58.039 36.000 16.46 0.00 34.78 3.91
4606 5127 4.321718 TGCATATCCTAATCAAGCAGAGC 58.678 43.478 0.00 0.00 0.00 4.09
4675 5209 7.831690 TCAATGCCTAACATCTTAAATGTGGTA 59.168 33.333 4.68 3.68 38.34 3.25
4676 5210 8.632679 CAATGCCTAACATCTTAAATGTGGTAT 58.367 33.333 4.68 5.23 38.34 2.73
4695 5230 5.785423 TGGTATTAATGGGACCTCCTATCTG 59.215 44.000 7.28 0.00 36.07 2.90
4696 5231 4.917906 ATTAATGGGACCTCCTATCTGC 57.082 45.455 0.00 0.00 36.07 4.26
4697 5232 1.439543 AATGGGACCTCCTATCTGCC 58.560 55.000 0.00 0.00 36.07 4.85
4698 5233 0.833834 ATGGGACCTCCTATCTGCCG 60.834 60.000 0.00 0.00 30.79 5.69
4699 5234 2.737830 GGACCTCCTATCTGCCGC 59.262 66.667 0.00 0.00 0.00 6.53
4700 5235 2.134287 GGACCTCCTATCTGCCGCA 61.134 63.158 0.00 0.00 0.00 5.69
4701 5236 1.476007 GGACCTCCTATCTGCCGCAT 61.476 60.000 0.00 0.00 0.00 4.73
4702 5237 0.394565 GACCTCCTATCTGCCGCATT 59.605 55.000 0.00 0.00 0.00 3.56
4703 5238 1.618837 GACCTCCTATCTGCCGCATTA 59.381 52.381 0.00 0.00 0.00 1.90
4704 5239 2.234908 GACCTCCTATCTGCCGCATTAT 59.765 50.000 0.00 0.00 0.00 1.28
4705 5240 2.027745 ACCTCCTATCTGCCGCATTATG 60.028 50.000 0.00 0.00 0.00 1.90
4706 5241 2.005451 CTCCTATCTGCCGCATTATGC 58.995 52.381 7.19 7.19 40.69 3.14
4716 5251 1.650912 GCATTATGCGGCAGACTGG 59.349 57.895 15.29 1.73 31.71 4.00
4717 5252 1.650912 CATTATGCGGCAGACTGGC 59.349 57.895 18.72 18.72 39.85 4.85
4807 5343 1.079875 TAAAACGATCGCGCTGGGTC 61.080 55.000 16.60 0.00 42.48 4.46
4825 5361 3.524759 CGAACTCGCGACGCTGAC 61.525 66.667 19.02 9.19 0.00 3.51
4833 5369 1.142185 CGCGACGCTGACTCATCAAT 61.142 55.000 19.02 0.00 33.30 2.57
4834 5370 1.002366 GCGACGCTGACTCATCAATT 58.998 50.000 13.73 0.00 33.30 2.32
4835 5371 1.005557 GCGACGCTGACTCATCAATTC 60.006 52.381 13.73 0.00 33.30 2.17
4836 5372 2.262211 CGACGCTGACTCATCAATTCA 58.738 47.619 0.00 0.00 33.30 2.57
4837 5373 2.862536 CGACGCTGACTCATCAATTCAT 59.137 45.455 0.00 0.00 33.30 2.57
4838 5374 3.302286 CGACGCTGACTCATCAATTCATG 60.302 47.826 0.00 0.00 33.30 3.07
4839 5375 3.865446 ACGCTGACTCATCAATTCATGA 58.135 40.909 0.00 0.00 43.67 3.07
4840 5376 4.256110 ACGCTGACTCATCAATTCATGAA 58.744 39.130 11.26 11.26 42.54 2.57
4841 5377 4.093998 ACGCTGACTCATCAATTCATGAAC 59.906 41.667 11.07 0.00 42.54 3.18
4842 5378 4.585364 GCTGACTCATCAATTCATGAACG 58.415 43.478 11.07 5.30 42.54 3.95
4843 5379 4.330894 GCTGACTCATCAATTCATGAACGA 59.669 41.667 11.07 10.94 42.54 3.85
4844 5380 5.163824 GCTGACTCATCAATTCATGAACGAA 60.164 40.000 11.07 0.00 42.54 3.85
4845 5381 6.413018 TGACTCATCAATTCATGAACGAAG 57.587 37.500 11.07 7.84 42.54 3.79
4846 5382 5.163824 TGACTCATCAATTCATGAACGAAGC 60.164 40.000 11.07 3.94 42.54 3.86
4847 5383 4.696877 ACTCATCAATTCATGAACGAAGCA 59.303 37.500 11.07 0.00 42.54 3.91
4848 5384 5.181811 ACTCATCAATTCATGAACGAAGCAA 59.818 36.000 11.07 0.00 42.54 3.91
4849 5385 5.393124 TCATCAATTCATGAACGAAGCAAC 58.607 37.500 11.07 0.00 42.54 4.17
4850 5386 5.181811 TCATCAATTCATGAACGAAGCAACT 59.818 36.000 11.07 0.00 42.54 3.16
4851 5387 5.034554 TCAATTCATGAACGAAGCAACTC 57.965 39.130 11.07 0.00 34.30 3.01
4852 5388 3.729526 ATTCATGAACGAAGCAACTCG 57.270 42.857 11.07 1.82 44.50 4.18
4853 5389 2.432206 TCATGAACGAAGCAACTCGA 57.568 45.000 9.48 0.00 41.44 4.04
4854 5390 2.328473 TCATGAACGAAGCAACTCGAG 58.672 47.619 11.84 11.84 41.44 4.04
4855 5391 1.391485 CATGAACGAAGCAACTCGAGG 59.609 52.381 18.41 0.17 41.44 4.63
4856 5392 0.387929 TGAACGAAGCAACTCGAGGT 59.612 50.000 18.41 7.47 41.44 3.85
4857 5393 0.784778 GAACGAAGCAACTCGAGGTG 59.215 55.000 26.35 26.35 41.44 4.00
4858 5394 0.387929 AACGAAGCAACTCGAGGTGA 59.612 50.000 34.09 0.00 41.44 4.02
4859 5395 0.387929 ACGAAGCAACTCGAGGTGAA 59.612 50.000 34.09 0.00 41.44 3.18
4860 5396 0.784778 CGAAGCAACTCGAGGTGAAC 59.215 55.000 34.09 20.51 41.44 3.18
4861 5397 1.865865 GAAGCAACTCGAGGTGAACA 58.134 50.000 34.09 0.00 0.00 3.18
4862 5398 2.210116 GAAGCAACTCGAGGTGAACAA 58.790 47.619 34.09 0.00 0.00 2.83
4863 5399 1.583054 AGCAACTCGAGGTGAACAAC 58.417 50.000 34.09 15.48 0.00 3.32
4864 5400 1.139058 AGCAACTCGAGGTGAACAACT 59.861 47.619 34.09 17.58 0.00 3.16
4865 5401 1.940613 GCAACTCGAGGTGAACAACTT 59.059 47.619 34.09 3.83 0.00 2.66
4866 5402 2.354821 GCAACTCGAGGTGAACAACTTT 59.645 45.455 34.09 3.02 0.00 2.66
4867 5403 3.181500 GCAACTCGAGGTGAACAACTTTT 60.181 43.478 34.09 2.45 0.00 2.27
4868 5404 4.342772 CAACTCGAGGTGAACAACTTTTG 58.657 43.478 26.59 7.10 0.00 2.44
4870 5406 3.374058 ACTCGAGGTGAACAACTTTTGTG 59.626 43.478 18.41 0.00 44.59 3.33
4871 5407 3.601435 TCGAGGTGAACAACTTTTGTGA 58.399 40.909 0.00 0.00 44.59 3.58
4872 5408 4.004314 TCGAGGTGAACAACTTTTGTGAA 58.996 39.130 0.00 0.00 44.59 3.18
4873 5409 4.456222 TCGAGGTGAACAACTTTTGTGAAA 59.544 37.500 0.00 0.00 44.59 2.69
4874 5410 4.793216 CGAGGTGAACAACTTTTGTGAAAG 59.207 41.667 0.00 0.00 44.59 2.62
4885 5421 3.708563 TTTGTGAAAGTAAGCAGCACC 57.291 42.857 0.00 0.00 0.00 5.01
4886 5422 2.340210 TGTGAAAGTAAGCAGCACCA 57.660 45.000 0.00 0.00 0.00 4.17
4887 5423 2.862541 TGTGAAAGTAAGCAGCACCAT 58.137 42.857 0.00 0.00 0.00 3.55
4888 5424 2.813754 TGTGAAAGTAAGCAGCACCATC 59.186 45.455 0.00 0.00 0.00 3.51
4889 5425 2.813754 GTGAAAGTAAGCAGCACCATCA 59.186 45.455 0.00 0.00 0.00 3.07
4890 5426 3.441572 GTGAAAGTAAGCAGCACCATCAT 59.558 43.478 0.00 0.00 0.00 2.45
4891 5427 4.081406 TGAAAGTAAGCAGCACCATCATT 58.919 39.130 0.00 0.00 0.00 2.57
4892 5428 4.523943 TGAAAGTAAGCAGCACCATCATTT 59.476 37.500 0.00 0.00 0.00 2.32
4893 5429 5.709631 TGAAAGTAAGCAGCACCATCATTTA 59.290 36.000 0.00 0.00 0.00 1.40
4894 5430 6.208402 TGAAAGTAAGCAGCACCATCATTTAA 59.792 34.615 0.00 0.00 0.00 1.52
4895 5431 5.824904 AGTAAGCAGCACCATCATTTAAG 57.175 39.130 0.00 0.00 0.00 1.85
4896 5432 5.256474 AGTAAGCAGCACCATCATTTAAGT 58.744 37.500 0.00 0.00 0.00 2.24
4897 5433 6.414732 AGTAAGCAGCACCATCATTTAAGTA 58.585 36.000 0.00 0.00 0.00 2.24
4898 5434 5.824904 AAGCAGCACCATCATTTAAGTAG 57.175 39.130 0.00 0.00 0.00 2.57
4899 5435 4.848357 AGCAGCACCATCATTTAAGTAGT 58.152 39.130 0.00 0.00 0.00 2.73
4900 5436 5.256474 AGCAGCACCATCATTTAAGTAGTT 58.744 37.500 0.00 0.00 0.00 2.24
4901 5437 6.414732 AGCAGCACCATCATTTAAGTAGTTA 58.585 36.000 0.00 0.00 0.00 2.24
4902 5438 6.316390 AGCAGCACCATCATTTAAGTAGTTAC 59.684 38.462 0.00 0.00 0.00 2.50
4903 5439 6.093495 GCAGCACCATCATTTAAGTAGTTACA 59.907 38.462 0.00 0.00 0.00 2.41
4904 5440 7.464358 CAGCACCATCATTTAAGTAGTTACAC 58.536 38.462 0.00 0.00 0.00 2.90
4905 5441 7.334421 CAGCACCATCATTTAAGTAGTTACACT 59.666 37.037 0.00 0.00 0.00 3.55
4906 5442 7.549488 AGCACCATCATTTAAGTAGTTACACTC 59.451 37.037 0.00 0.00 0.00 3.51
4907 5443 7.464178 GCACCATCATTTAAGTAGTTACACTCG 60.464 40.741 0.00 0.00 0.00 4.18
4908 5444 6.534079 ACCATCATTTAAGTAGTTACACTCGC 59.466 38.462 0.00 0.00 0.00 5.03
4909 5445 6.533723 CCATCATTTAAGTAGTTACACTCGCA 59.466 38.462 0.00 0.00 0.00 5.10
4910 5446 7.224753 CCATCATTTAAGTAGTTACACTCGCAT 59.775 37.037 0.00 0.00 0.00 4.73
4911 5447 9.244799 CATCATTTAAGTAGTTACACTCGCATA 57.755 33.333 0.00 0.00 0.00 3.14
4912 5448 9.811995 ATCATTTAAGTAGTTACACTCGCATAA 57.188 29.630 0.00 0.00 0.00 1.90
4913 5449 9.642327 TCATTTAAGTAGTTACACTCGCATAAA 57.358 29.630 0.00 0.00 0.00 1.40
4918 5454 7.535489 AGTAGTTACACTCGCATAAAATTCC 57.465 36.000 0.00 0.00 0.00 3.01
4919 5455 7.101054 AGTAGTTACACTCGCATAAAATTCCA 58.899 34.615 0.00 0.00 0.00 3.53
4920 5456 6.811253 AGTTACACTCGCATAAAATTCCAA 57.189 33.333 0.00 0.00 0.00 3.53
4921 5457 6.608610 AGTTACACTCGCATAAAATTCCAAC 58.391 36.000 0.00 0.00 0.00 3.77
4922 5458 6.205853 AGTTACACTCGCATAAAATTCCAACA 59.794 34.615 0.00 0.00 0.00 3.33
4923 5459 5.446143 ACACTCGCATAAAATTCCAACAA 57.554 34.783 0.00 0.00 0.00 2.83
4924 5460 5.837437 ACACTCGCATAAAATTCCAACAAA 58.163 33.333 0.00 0.00 0.00 2.83
4925 5461 6.276847 ACACTCGCATAAAATTCCAACAAAA 58.723 32.000 0.00 0.00 0.00 2.44
4926 5462 6.420604 ACACTCGCATAAAATTCCAACAAAAG 59.579 34.615 0.00 0.00 0.00 2.27
4927 5463 6.640499 CACTCGCATAAAATTCCAACAAAAGA 59.360 34.615 0.00 0.00 0.00 2.52
4928 5464 7.329226 CACTCGCATAAAATTCCAACAAAAGAT 59.671 33.333 0.00 0.00 0.00 2.40
4929 5465 7.329226 ACTCGCATAAAATTCCAACAAAAGATG 59.671 33.333 0.00 0.00 0.00 2.90
4930 5466 6.589523 TCGCATAAAATTCCAACAAAAGATGG 59.410 34.615 0.00 0.00 38.09 3.51
4931 5467 6.589523 CGCATAAAATTCCAACAAAAGATGGA 59.410 34.615 0.00 0.00 43.84 3.41
4932 5468 7.411804 CGCATAAAATTCCAACAAAAGATGGAC 60.412 37.037 0.00 0.00 45.14 4.02
4933 5469 7.603784 GCATAAAATTCCAACAAAAGATGGACT 59.396 33.333 0.00 0.00 45.14 3.85
4934 5470 9.143631 CATAAAATTCCAACAAAAGATGGACTC 57.856 33.333 0.00 0.00 45.14 3.36
4935 5471 5.376854 AATTCCAACAAAAGATGGACTCG 57.623 39.130 0.00 0.00 45.14 4.18
4936 5472 2.151202 TCCAACAAAAGATGGACTCGC 58.849 47.619 0.00 0.00 40.74 5.03
4937 5473 1.879380 CCAACAAAAGATGGACTCGCA 59.121 47.619 0.00 0.00 39.12 5.10
4938 5474 2.293122 CCAACAAAAGATGGACTCGCAA 59.707 45.455 0.00 0.00 39.12 4.85
4939 5475 3.558505 CAACAAAAGATGGACTCGCAAG 58.441 45.455 0.00 0.00 0.00 4.01
4940 5476 2.154462 ACAAAAGATGGACTCGCAAGG 58.846 47.619 0.00 0.00 38.47 3.61
4941 5477 2.224523 ACAAAAGATGGACTCGCAAGGA 60.225 45.455 0.00 0.00 38.47 3.36
4942 5478 3.012518 CAAAAGATGGACTCGCAAGGAT 58.987 45.455 0.00 0.00 38.47 3.24
4943 5479 3.356529 AAAGATGGACTCGCAAGGATT 57.643 42.857 0.00 0.00 38.47 3.01
4944 5480 2.611225 AGATGGACTCGCAAGGATTC 57.389 50.000 0.00 0.00 38.47 2.52
4945 5481 1.202463 AGATGGACTCGCAAGGATTCG 60.202 52.381 0.00 0.00 38.47 3.34
4946 5482 0.824109 ATGGACTCGCAAGGATTCGA 59.176 50.000 0.00 0.00 38.47 3.71
4947 5483 0.606096 TGGACTCGCAAGGATTCGAA 59.394 50.000 0.00 0.00 34.07 3.71
4948 5484 1.000145 GGACTCGCAAGGATTCGAAC 59.000 55.000 0.00 0.00 34.07 3.95
4949 5485 1.404315 GGACTCGCAAGGATTCGAACT 60.404 52.381 0.00 0.00 34.07 3.01
4950 5486 1.921230 GACTCGCAAGGATTCGAACTC 59.079 52.381 0.00 0.00 34.07 3.01
4951 5487 1.272490 ACTCGCAAGGATTCGAACTCA 59.728 47.619 0.00 0.00 34.07 3.41
4952 5488 2.288825 ACTCGCAAGGATTCGAACTCAA 60.289 45.455 0.00 0.00 34.07 3.02
4953 5489 2.066262 TCGCAAGGATTCGAACTCAAC 58.934 47.619 0.00 0.00 38.47 3.18
4954 5490 1.798223 CGCAAGGATTCGAACTCAACA 59.202 47.619 0.00 0.00 0.00 3.33
4955 5491 2.411547 CGCAAGGATTCGAACTCAACAC 60.412 50.000 0.00 0.00 0.00 3.32
4956 5492 2.095718 GCAAGGATTCGAACTCAACACC 60.096 50.000 0.00 0.00 0.00 4.16
4957 5493 3.403038 CAAGGATTCGAACTCAACACCT 58.597 45.455 0.00 0.00 0.00 4.00
4958 5494 3.320673 AGGATTCGAACTCAACACCTC 57.679 47.619 0.00 0.00 0.00 3.85
4959 5495 2.028020 AGGATTCGAACTCAACACCTCC 60.028 50.000 0.00 0.00 0.00 4.30
4960 5496 2.028020 GGATTCGAACTCAACACCTCCT 60.028 50.000 0.00 0.00 0.00 3.69
4961 5497 2.526304 TTCGAACTCAACACCTCCTG 57.474 50.000 0.00 0.00 0.00 3.86
4962 5498 0.679505 TCGAACTCAACACCTCCTGG 59.320 55.000 0.00 0.00 39.83 4.45
4964 5500 1.616865 CGAACTCAACACCTCCTGGTA 59.383 52.381 0.00 0.00 46.60 3.25
4965 5501 2.352814 CGAACTCAACACCTCCTGGTAG 60.353 54.545 0.00 0.00 46.60 3.18
4966 5502 2.400467 ACTCAACACCTCCTGGTAGT 57.600 50.000 0.00 0.00 46.60 2.73
4967 5503 3.537795 ACTCAACACCTCCTGGTAGTA 57.462 47.619 0.00 0.00 46.60 1.82
4968 5504 3.163467 ACTCAACACCTCCTGGTAGTAC 58.837 50.000 0.00 0.00 46.60 2.73
4969 5505 2.163815 CTCAACACCTCCTGGTAGTACG 59.836 54.545 0.00 0.00 46.60 3.67
4970 5506 0.893447 AACACCTCCTGGTAGTACGC 59.107 55.000 0.00 0.00 46.60 4.42
4971 5507 0.251474 ACACCTCCTGGTAGTACGCA 60.251 55.000 0.00 0.00 46.60 5.24
4972 5508 0.456221 CACCTCCTGGTAGTACGCAG 59.544 60.000 10.28 10.28 46.60 5.18
4973 5509 1.321074 ACCTCCTGGTAGTACGCAGC 61.321 60.000 11.31 0.00 46.43 5.25
4974 5510 1.064296 CTCCTGGTAGTACGCAGCG 59.936 63.158 14.82 14.82 0.00 5.18
4975 5511 2.104331 CCTGGTAGTACGCAGCGG 59.896 66.667 21.15 0.70 0.00 5.52
4976 5512 2.707849 CCTGGTAGTACGCAGCGGT 61.708 63.158 21.15 7.44 0.00 5.68
4977 5513 1.378882 CCTGGTAGTACGCAGCGGTA 61.379 60.000 21.15 6.38 0.00 4.02
4978 5514 0.248377 CTGGTAGTACGCAGCGGTAC 60.248 60.000 21.15 17.71 42.41 3.34
4979 5515 0.959867 TGGTAGTACGCAGCGGTACA 60.960 55.000 21.15 6.28 44.08 2.90
4980 5516 0.383231 GGTAGTACGCAGCGGTACAT 59.617 55.000 21.15 10.85 44.08 2.29
4981 5517 1.603802 GGTAGTACGCAGCGGTACATA 59.396 52.381 21.15 10.03 44.08 2.29
4982 5518 2.033299 GGTAGTACGCAGCGGTACATAA 59.967 50.000 21.15 6.49 44.08 1.90
4983 5519 2.199291 AGTACGCAGCGGTACATAAC 57.801 50.000 21.15 5.37 44.08 1.89
4984 5520 1.202336 AGTACGCAGCGGTACATAACC 60.202 52.381 21.15 0.00 44.08 2.85
5007 5543 9.921637 AACCAATTGAATACATAATTTTGACGT 57.078 25.926 7.12 0.00 0.00 4.34
5008 5544 9.567848 ACCAATTGAATACATAATTTTGACGTC 57.432 29.630 9.11 9.11 0.00 4.34
5009 5545 9.019764 CCAATTGAATACATAATTTTGACGTCC 57.980 33.333 14.12 0.00 0.00 4.79
5010 5546 9.566530 CAATTGAATACATAATTTTGACGTCCA 57.433 29.630 14.12 0.00 0.00 4.02
5013 5549 9.619316 TTGAATACATAATTTTGACGTCCAAAG 57.381 29.630 18.30 8.71 44.67 2.77
5014 5550 7.753132 TGAATACATAATTTTGACGTCCAAAGC 59.247 33.333 18.30 0.00 44.67 3.51
5015 5551 5.446143 ACATAATTTTGACGTCCAAAGCA 57.554 34.783 18.30 10.00 44.67 3.91
5016 5552 6.024552 ACATAATTTTGACGTCCAAAGCAT 57.975 33.333 18.30 11.55 44.67 3.79
5017 5553 5.863397 ACATAATTTTGACGTCCAAAGCATG 59.137 36.000 23.26 23.26 44.67 4.06
5018 5554 2.132740 TTTTGACGTCCAAAGCATGC 57.867 45.000 14.12 10.51 44.67 4.06
5019 5555 1.028130 TTTGACGTCCAAAGCATGCA 58.972 45.000 21.98 0.00 39.65 3.96
5020 5556 0.592637 TTGACGTCCAAAGCATGCAG 59.407 50.000 21.98 9.16 0.00 4.41
5021 5557 1.154150 GACGTCCAAAGCATGCAGC 60.154 57.895 21.98 1.96 46.19 5.25
5033 5569 3.637998 GCATGCAGCACAGCTTATAAT 57.362 42.857 14.21 0.00 44.79 1.28
5034 5570 4.754372 GCATGCAGCACAGCTTATAATA 57.246 40.909 14.21 0.00 44.79 0.98
5035 5571 5.112220 GCATGCAGCACAGCTTATAATAA 57.888 39.130 14.21 0.00 44.79 1.40
5036 5572 4.913924 GCATGCAGCACAGCTTATAATAAC 59.086 41.667 14.21 0.00 44.79 1.89
5037 5573 5.278169 GCATGCAGCACAGCTTATAATAACT 60.278 40.000 14.21 0.00 44.79 2.24
5038 5574 5.739752 TGCAGCACAGCTTATAATAACTG 57.260 39.130 0.00 8.13 36.40 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
273 274 6.151312 TGTTACTGATCTGTCTTCTCACCTAC 59.849 42.308 8.69 0.00 0.00 3.18
378 380 3.138468 AGGTTAAAGAAGACAAGTGCCCT 59.862 43.478 0.00 0.00 0.00 5.19
845 1020 3.749088 CCTGCGGAATACAAGTTACAACA 59.251 43.478 0.00 0.00 0.00 3.33
877 1052 7.663081 GGGCAGATACATTTGATATTTCTCTCA 59.337 37.037 0.00 0.00 0.00 3.27
979 1194 4.390129 TGAACTAATTGCCTAAACCCCA 57.610 40.909 0.00 0.00 0.00 4.96
1021 1247 3.394674 TTCTGTCAACGACTAATGCCA 57.605 42.857 0.00 0.00 33.15 4.92
1320 1570 2.693762 CCGTGATGTTGCTGGCTGG 61.694 63.158 0.00 0.00 0.00 4.85
1451 1706 1.153309 CATCGCCATGGCAGACTGA 60.153 57.895 34.93 23.60 42.06 3.41
1645 1900 1.580845 ATCACTGCAAACCAGCTCGC 61.581 55.000 0.00 0.00 45.78 5.03
1710 1965 6.951971 AGGAAGAATTACTGTAGTTGATGCT 58.048 36.000 0.00 0.00 38.34 3.79
1863 2145 4.195416 CCCTTTACTTCCTGAGAGCATTC 58.805 47.826 0.00 0.00 0.00 2.67
2102 2432 2.016905 TGCCCTCCCTATAAGCTCTC 57.983 55.000 0.00 0.00 0.00 3.20
2106 2436 2.639839 TCTTGATGCCCTCCCTATAAGC 59.360 50.000 0.00 0.00 0.00 3.09
2107 2437 4.163427 TCTCTTGATGCCCTCCCTATAAG 58.837 47.826 0.00 0.00 0.00 1.73
2133 2487 1.087771 CACCGAATCCCACGCCTTAC 61.088 60.000 0.00 0.00 0.00 2.34
2143 2497 6.421202 GTCAAGATATGTAACTCACCGAATCC 59.579 42.308 0.00 0.00 0.00 3.01
2160 2514 6.172630 ACAACAGTGTGCATATGTCAAGATA 58.827 36.000 4.29 0.00 36.31 1.98
2366 2768 9.872684 ATAAGGAAATCCAGTCACATCAAATAT 57.127 29.630 1.67 0.00 38.89 1.28
2444 2846 3.667497 TTCTGAAGTACCTGCAGTCAG 57.333 47.619 19.99 19.99 38.27 3.51
2635 3045 2.945890 GCATTTGGAGGAACTTCCCGAT 60.946 50.000 4.01 0.00 41.55 4.18
2796 3206 6.663953 AGTTGGAGTTACAGTCTAGCATCTTA 59.336 38.462 0.00 0.00 0.00 2.10
2875 3285 3.442273 CCCACTAAACGCACCACATTAAT 59.558 43.478 0.00 0.00 0.00 1.40
2958 3368 2.094182 GGCCGAGAAGATGTACTTGTCA 60.094 50.000 0.00 0.00 45.43 3.58
3075 3485 2.618241 GTGTGGCTTGATGTCAAAGTGA 59.382 45.455 0.00 0.00 35.15 3.41
3192 3602 2.006805 ACCCTATAGTTCCCCGTAGC 57.993 55.000 0.00 0.00 0.00 3.58
3412 3824 2.426024 GCATCTCAGCATCAACATGGTT 59.574 45.455 0.00 0.00 38.76 3.67
3413 3825 2.022195 GCATCTCAGCATCAACATGGT 58.978 47.619 0.00 0.00 41.64 3.55
3414 3826 2.021457 TGCATCTCAGCATCAACATGG 58.979 47.619 0.00 0.00 40.11 3.66
3512 3927 2.141517 CTTCCAGCATCTCTATTGCCG 58.858 52.381 0.00 0.00 41.06 5.69
3540 3955 2.225467 GAAGGCATCTGCAAGGTATCC 58.775 52.381 4.33 0.00 44.36 2.59
3716 4137 8.620116 TGATACAACCATATGTACATCCATTG 57.380 34.615 12.68 14.39 38.53 2.82
3722 4143 7.938490 TCATGCTTGATACAACCATATGTACAT 59.062 33.333 13.93 13.93 38.53 2.29
3744 4169 6.293081 CCGGAAATACAGCAGATAGTTTCATG 60.293 42.308 0.00 0.00 0.00 3.07
3773 4198 4.680110 CGCTAGCTATTACATGTACACACC 59.320 45.833 13.93 0.00 0.00 4.16
3816 4241 9.662947 TGAATAAGATGACATGGACATATCATC 57.337 33.333 20.41 20.41 46.67 2.92
3882 4316 9.412460 TCCTAATGTCGATTACTAAGGACTTAA 57.588 33.333 0.00 0.00 30.69 1.85
3884 4318 7.714703 GTCCTAATGTCGATTACTAAGGACTT 58.285 38.462 19.18 0.00 42.51 3.01
3885 4319 7.061688 AGTCCTAATGTCGATTACTAAGGACT 58.938 38.462 21.59 21.59 46.31 3.85
3886 4320 7.274603 AGTCCTAATGTCGATTACTAAGGAC 57.725 40.000 18.98 18.98 44.16 3.85
3896 4330 9.574458 CGATGATTATTAAGTCCTAATGTCGAT 57.426 33.333 0.00 0.00 32.28 3.59
3897 4331 8.573885 ACGATGATTATTAAGTCCTAATGTCGA 58.426 33.333 12.86 0.00 32.31 4.20
3898 4332 8.744008 ACGATGATTATTAAGTCCTAATGTCG 57.256 34.615 0.00 0.00 33.17 4.35
3899 4333 8.851416 CGACGATGATTATTAAGTCCTAATGTC 58.149 37.037 0.00 0.00 32.28 3.06
3901 4335 7.201444 GCCGACGATGATTATTAAGTCCTAATG 60.201 40.741 0.00 0.00 32.28 1.90
3904 4338 5.336213 GGCCGACGATGATTATTAAGTCCTA 60.336 44.000 0.00 0.00 0.00 2.94
3905 4339 4.557205 GCCGACGATGATTATTAAGTCCT 58.443 43.478 0.00 0.00 0.00 3.85
3906 4340 3.678548 GGCCGACGATGATTATTAAGTCC 59.321 47.826 0.00 0.00 0.00 3.85
3907 4341 4.304110 TGGCCGACGATGATTATTAAGTC 58.696 43.478 0.00 0.00 0.00 3.01
3908 4342 4.330944 TGGCCGACGATGATTATTAAGT 57.669 40.909 0.00 0.00 0.00 2.24
3909 4343 4.988540 TCTTGGCCGACGATGATTATTAAG 59.011 41.667 0.00 0.00 0.00 1.85
3910 4344 4.748102 GTCTTGGCCGACGATGATTATTAA 59.252 41.667 0.00 0.00 0.00 1.40
3914 4365 1.478916 TGTCTTGGCCGACGATGATTA 59.521 47.619 0.00 0.00 36.71 1.75
3923 4374 1.621317 TGAGTACAATGTCTTGGCCGA 59.379 47.619 0.00 0.00 36.64 5.54
3929 4380 6.920817 TGTCGATTAGTGAGTACAATGTCTT 58.079 36.000 0.00 0.00 0.00 3.01
3931 4382 7.757097 AATGTCGATTAGTGAGTACAATGTC 57.243 36.000 0.00 0.00 0.00 3.06
3932 4383 7.921214 CCTAATGTCGATTAGTGAGTACAATGT 59.079 37.037 0.00 0.00 39.63 2.71
3933 4384 8.135529 TCCTAATGTCGATTAGTGAGTACAATG 58.864 37.037 0.00 0.00 39.63 2.82
3934 4385 8.136165 GTCCTAATGTCGATTAGTGAGTACAAT 58.864 37.037 0.00 0.00 39.63 2.71
3935 4386 7.338703 AGTCCTAATGTCGATTAGTGAGTACAA 59.661 37.037 0.00 0.00 39.63 2.41
3936 4387 6.827251 AGTCCTAATGTCGATTAGTGAGTACA 59.173 38.462 0.00 0.00 39.63 2.90
3937 4388 7.261829 AGTCCTAATGTCGATTAGTGAGTAC 57.738 40.000 5.35 0.00 39.63 2.73
3938 4389 7.876936 AAGTCCTAATGTCGATTAGTGAGTA 57.123 36.000 5.35 0.00 39.63 2.59
3939 4390 6.777213 AAGTCCTAATGTCGATTAGTGAGT 57.223 37.500 5.35 3.31 39.63 3.41
3958 4409 7.325579 GTCTCGGTCGGTTATGATTATTAAGTC 59.674 40.741 0.00 0.00 0.00 3.01
3972 4423 2.824341 AGTTCTAATGTCTCGGTCGGTT 59.176 45.455 0.00 0.00 0.00 4.44
3977 4428 7.406031 TCTCAATTAGTTCTAATGTCTCGGT 57.594 36.000 5.93 0.00 0.00 4.69
3996 4447 9.477484 GCGAAGATTATTAAGTCCTATTCTCAA 57.523 33.333 0.00 0.00 0.00 3.02
3997 4448 8.088981 GGCGAAGATTATTAAGTCCTATTCTCA 58.911 37.037 0.00 0.00 0.00 3.27
3998 4449 7.273815 CGGCGAAGATTATTAAGTCCTATTCTC 59.726 40.741 0.00 0.00 0.00 2.87
3999 4450 7.091443 CGGCGAAGATTATTAAGTCCTATTCT 58.909 38.462 0.00 0.00 0.00 2.40
4000 4451 6.310711 CCGGCGAAGATTATTAAGTCCTATTC 59.689 42.308 9.30 0.00 0.00 1.75
4001 4452 6.164176 CCGGCGAAGATTATTAAGTCCTATT 58.836 40.000 9.30 0.00 0.00 1.73
4002 4453 5.721232 CCGGCGAAGATTATTAAGTCCTAT 58.279 41.667 9.30 0.00 0.00 2.57
4003 4454 4.560108 GCCGGCGAAGATTATTAAGTCCTA 60.560 45.833 12.58 0.00 0.00 2.94
4004 4455 3.802675 GCCGGCGAAGATTATTAAGTCCT 60.803 47.826 12.58 0.00 0.00 3.85
4005 4456 2.479275 GCCGGCGAAGATTATTAAGTCC 59.521 50.000 12.58 0.00 0.00 3.85
4006 4457 2.479275 GGCCGGCGAAGATTATTAAGTC 59.521 50.000 22.54 0.00 0.00 3.01
4007 4458 2.490991 GGCCGGCGAAGATTATTAAGT 58.509 47.619 22.54 0.00 0.00 2.24
4008 4459 1.459592 CGGCCGGCGAAGATTATTAAG 59.540 52.381 22.54 0.00 0.00 1.85
4009 4460 1.504359 CGGCCGGCGAAGATTATTAA 58.496 50.000 22.54 0.00 0.00 1.40
4010 4461 0.320073 CCGGCCGGCGAAGATTATTA 60.320 55.000 34.96 0.00 0.00 0.98
4011 4462 1.597027 CCGGCCGGCGAAGATTATT 60.597 57.895 34.96 0.00 0.00 1.40
4012 4463 2.030562 CCGGCCGGCGAAGATTAT 59.969 61.111 34.96 0.00 0.00 1.28
4013 4464 4.230002 CCCGGCCGGCGAAGATTA 62.230 66.667 39.46 0.00 0.00 1.75
4020 4471 4.841861 TTAATGTCCCGGCCGGCG 62.842 66.667 39.46 29.93 0.00 6.46
4021 4472 2.047443 TTTTAATGTCCCGGCCGGC 61.047 57.895 39.46 26.31 0.00 6.13
4022 4473 0.678684 AGTTTTAATGTCCCGGCCGG 60.679 55.000 37.99 37.99 0.00 6.13
4023 4474 2.027003 TAGTTTTAATGTCCCGGCCG 57.973 50.000 21.04 21.04 0.00 6.13
4024 4475 3.002965 CGATTAGTTTTAATGTCCCGGCC 59.997 47.826 0.00 0.00 29.67 6.13
4025 4476 3.872771 TCGATTAGTTTTAATGTCCCGGC 59.127 43.478 0.00 0.00 29.67 6.13
4026 4477 4.871557 TGTCGATTAGTTTTAATGTCCCGG 59.128 41.667 0.00 0.00 29.67 5.73
4027 4478 6.598753 ATGTCGATTAGTTTTAATGTCCCG 57.401 37.500 0.00 0.00 29.67 5.14
4028 4479 8.557029 CCTAATGTCGATTAGTTTTAATGTCCC 58.443 37.037 5.35 0.00 39.63 4.46
4029 4480 9.321562 TCCTAATGTCGATTAGTTTTAATGTCC 57.678 33.333 5.35 0.00 39.63 4.02
4065 4516 4.592192 ATGTCTCGGCCGGCGATG 62.592 66.667 27.83 13.27 0.00 3.84
4066 4517 3.849951 AATGTCTCGGCCGGCGAT 61.850 61.111 27.83 9.69 0.00 4.58
4067 4518 4.812476 CAATGTCTCGGCCGGCGA 62.812 66.667 27.83 19.40 0.00 5.54
4069 4520 3.969250 TTCCAATGTCTCGGCCGGC 62.969 63.158 27.83 21.18 0.00 6.13
4070 4521 2.106683 GTTCCAATGTCTCGGCCGG 61.107 63.158 27.83 16.54 0.00 6.13
4071 4522 0.174845 TAGTTCCAATGTCTCGGCCG 59.825 55.000 22.12 22.12 0.00 6.13
4072 4523 2.396590 TTAGTTCCAATGTCTCGGCC 57.603 50.000 0.00 0.00 0.00 6.13
4073 4524 2.540101 CGATTAGTTCCAATGTCTCGGC 59.460 50.000 0.00 0.00 0.00 5.54
4074 4525 4.041740 TCGATTAGTTCCAATGTCTCGG 57.958 45.455 0.00 0.00 0.00 4.63
4075 4526 4.921547 TCTCGATTAGTTCCAATGTCTCG 58.078 43.478 0.00 0.00 0.00 4.04
4076 4527 7.596995 CCTATTCTCGATTAGTTCCAATGTCTC 59.403 40.741 0.00 0.00 0.00 3.36
4077 4528 7.287927 TCCTATTCTCGATTAGTTCCAATGTCT 59.712 37.037 0.00 0.00 0.00 3.41
4078 4529 7.382759 GTCCTATTCTCGATTAGTTCCAATGTC 59.617 40.741 0.00 0.00 0.00 3.06
4079 4530 7.070074 AGTCCTATTCTCGATTAGTTCCAATGT 59.930 37.037 0.00 0.00 0.00 2.71
4080 4531 7.437748 AGTCCTATTCTCGATTAGTTCCAATG 58.562 38.462 0.00 0.00 0.00 2.82
4081 4532 7.604657 AGTCCTATTCTCGATTAGTTCCAAT 57.395 36.000 0.00 0.00 0.00 3.16
4082 4533 7.419711 AAGTCCTATTCTCGATTAGTTCCAA 57.580 36.000 0.00 0.00 0.00 3.53
4083 4534 8.529424 TTAAGTCCTATTCTCGATTAGTTCCA 57.471 34.615 0.00 0.00 0.00 3.53
4092 4543 7.968956 GCGATGATTATTAAGTCCTATTCTCGA 59.031 37.037 0.00 0.00 0.00 4.04
4093 4544 7.221067 GGCGATGATTATTAAGTCCTATTCTCG 59.779 40.741 0.00 0.00 0.00 4.04
4094 4545 7.221067 CGGCGATGATTATTAAGTCCTATTCTC 59.779 40.741 0.00 0.00 0.00 2.87
4095 4546 7.036220 CGGCGATGATTATTAAGTCCTATTCT 58.964 38.462 0.00 0.00 0.00 2.40
4096 4547 6.255887 CCGGCGATGATTATTAAGTCCTATTC 59.744 42.308 9.30 0.00 0.00 1.75
4097 4548 6.106673 CCGGCGATGATTATTAAGTCCTATT 58.893 40.000 9.30 0.00 0.00 1.73
4098 4549 5.661458 CCGGCGATGATTATTAAGTCCTAT 58.339 41.667 9.30 0.00 0.00 2.57
4099 4550 4.619863 GCCGGCGATGATTATTAAGTCCTA 60.620 45.833 12.58 0.00 0.00 2.94
4100 4551 3.864921 GCCGGCGATGATTATTAAGTCCT 60.865 47.826 12.58 0.00 0.00 3.85
4101 4552 2.415512 GCCGGCGATGATTATTAAGTCC 59.584 50.000 12.58 0.00 0.00 3.85
4102 4553 2.415512 GGCCGGCGATGATTATTAAGTC 59.584 50.000 22.54 0.00 0.00 3.01
4103 4554 2.423577 GGCCGGCGATGATTATTAAGT 58.576 47.619 22.54 0.00 0.00 2.24
4104 4555 1.393539 CGGCCGGCGATGATTATTAAG 59.606 52.381 22.54 0.00 0.00 1.85
4105 4556 1.001068 TCGGCCGGCGATGATTATTAA 59.999 47.619 27.83 0.00 0.00 1.40
4106 4557 0.604073 TCGGCCGGCGATGATTATTA 59.396 50.000 27.83 0.00 0.00 0.98
4107 4558 0.670546 CTCGGCCGGCGATGATTATT 60.671 55.000 27.83 0.00 0.00 1.40
4108 4559 1.079819 CTCGGCCGGCGATGATTAT 60.080 57.895 27.83 0.00 0.00 1.28
4109 4560 2.197605 TCTCGGCCGGCGATGATTA 61.198 57.895 27.83 0.26 0.00 1.75
4110 4561 3.536917 TCTCGGCCGGCGATGATT 61.537 61.111 27.83 0.00 0.00 2.57
4111 4562 4.286320 GTCTCGGCCGGCGATGAT 62.286 66.667 27.83 0.00 0.00 2.45
4149 4600 2.415512 GCCGGCGATGATTATTAAGTCC 59.584 50.000 12.58 0.00 0.00 3.85
4150 4601 2.415512 GGCCGGCGATGATTATTAAGTC 59.584 50.000 22.54 0.00 0.00 3.01
4155 4606 0.670546 CTCGGCCGGCGATGATTATT 60.671 55.000 27.83 0.00 0.00 1.40
4198 4649 4.020218 TCAAGTCAAGGCATTAGCTGTACT 60.020 41.667 0.00 0.00 41.70 2.73
4247 4698 4.322273 GGTGTAGACAACTACCTGTTACCC 60.322 50.000 0.00 0.00 45.81 3.69
4257 4708 3.119245 GGAATCGCTGGTGTAGACAACTA 60.119 47.826 0.00 0.00 33.92 2.24
4260 4711 1.899814 AGGAATCGCTGGTGTAGACAA 59.100 47.619 0.00 0.00 0.00 3.18
4293 4744 2.045708 GCCGATTGCACATGGACCA 61.046 57.895 0.00 0.00 40.77 4.02
4294 4745 2.774799 GGCCGATTGCACATGGACC 61.775 63.158 0.00 0.00 43.89 4.46
4295 4746 2.800736 GGCCGATTGCACATGGAC 59.199 61.111 0.00 0.00 43.89 4.02
4296 4747 2.823593 CGGCCGATTGCACATGGA 60.824 61.111 24.07 0.00 43.89 3.41
4297 4748 3.891400 CCGGCCGATTGCACATGG 61.891 66.667 30.73 0.44 43.89 3.66
4298 4749 4.557605 GCCGGCCGATTGCACATG 62.558 66.667 30.73 7.40 43.89 3.21
4331 4782 2.500509 TGGCGTTGTTAAGCAAAAGG 57.499 45.000 0.00 0.00 39.03 3.11
4332 4783 3.701241 TCTTGGCGTTGTTAAGCAAAAG 58.299 40.909 0.00 0.00 39.03 2.27
4384 4905 3.949113 ACCAAGTCTAGCTAGTCTACAGC 59.051 47.826 18.93 4.29 39.41 4.40
4385 4906 4.336993 CCACCAAGTCTAGCTAGTCTACAG 59.663 50.000 18.93 13.27 0.00 2.74
4423 4944 7.041098 CCGATAATGGCTAAGCTAATTGTTCTT 60.041 37.037 0.00 0.00 0.00 2.52
4425 4946 6.426937 TCCGATAATGGCTAAGCTAATTGTTC 59.573 38.462 0.00 0.00 0.00 3.18
4529 5050 6.410942 AGCCTTCAATTTAATCTATTGGCC 57.589 37.500 0.00 0.00 34.51 5.36
4530 5051 9.415544 CATTAGCCTTCAATTTAATCTATTGGC 57.584 33.333 0.00 0.00 34.51 4.52
4531 5052 9.415544 GCATTAGCCTTCAATTTAATCTATTGG 57.584 33.333 0.00 0.00 32.92 3.16
4575 5096 7.501559 GCTTGATTAGGATATGCATATGGATGT 59.498 37.037 23.76 12.90 35.30 3.06
4675 5209 3.589288 GGCAGATAGGAGGTCCCATTAAT 59.411 47.826 0.00 0.00 37.41 1.40
4676 5210 2.979678 GGCAGATAGGAGGTCCCATTAA 59.020 50.000 0.00 0.00 37.41 1.40
4698 5233 1.650912 CCAGTCTGCCGCATAATGC 59.349 57.895 0.98 0.00 40.69 3.56
4699 5234 1.650912 GCCAGTCTGCCGCATAATG 59.349 57.895 0.00 0.00 0.00 1.90
4700 5235 1.889105 CGCCAGTCTGCCGCATAAT 60.889 57.895 0.00 0.00 0.00 1.28
4701 5236 2.511373 CGCCAGTCTGCCGCATAA 60.511 61.111 0.00 0.00 0.00 1.90
4702 5237 4.529219 CCGCCAGTCTGCCGCATA 62.529 66.667 0.00 0.00 0.00 3.14
4708 5243 4.554036 GATCCCCCGCCAGTCTGC 62.554 72.222 0.00 0.00 0.00 4.26
4709 5244 4.227134 CGATCCCCCGCCAGTCTG 62.227 72.222 0.00 0.00 0.00 3.51
4737 5272 3.378602 GGGCCGGCCAATTCGTTT 61.379 61.111 44.46 0.00 37.98 3.60
4741 5276 3.352990 TACCTGGGCCGGCCAATTC 62.353 63.158 44.46 28.47 37.98 2.17
4794 5329 4.508128 TTCGGACCCAGCGCGATC 62.508 66.667 12.10 0.00 0.00 3.69
4807 5343 4.753877 TCAGCGTCGCGAGTTCGG 62.754 66.667 10.24 2.24 40.23 4.30
4809 5345 2.126812 AGTCAGCGTCGCGAGTTC 60.127 61.111 10.24 0.76 0.00 3.01
4817 5353 3.867493 TCATGAATTGATGAGTCAGCGTC 59.133 43.478 3.21 2.02 35.57 5.19
4825 5361 5.225899 TGCTTCGTTCATGAATTGATGAG 57.774 39.130 12.12 9.14 33.86 2.90
4833 5369 2.731451 CTCGAGTTGCTTCGTTCATGAA 59.269 45.455 3.38 3.38 41.22 2.57
4834 5370 2.328473 CTCGAGTTGCTTCGTTCATGA 58.672 47.619 3.62 0.00 41.22 3.07
4835 5371 1.391485 CCTCGAGTTGCTTCGTTCATG 59.609 52.381 12.31 0.00 41.22 3.07
4836 5372 1.000955 ACCTCGAGTTGCTTCGTTCAT 59.999 47.619 12.31 0.00 41.22 2.57
4837 5373 0.387929 ACCTCGAGTTGCTTCGTTCA 59.612 50.000 12.31 0.00 41.22 3.18
4838 5374 0.784778 CACCTCGAGTTGCTTCGTTC 59.215 55.000 12.31 0.00 41.22 3.95
4839 5375 0.387929 TCACCTCGAGTTGCTTCGTT 59.612 50.000 12.31 0.00 41.22 3.85
4840 5376 0.387929 TTCACCTCGAGTTGCTTCGT 59.612 50.000 12.31 0.00 41.22 3.85
4841 5377 0.784778 GTTCACCTCGAGTTGCTTCG 59.215 55.000 12.31 0.00 41.79 3.79
4842 5378 1.865865 TGTTCACCTCGAGTTGCTTC 58.134 50.000 12.31 2.21 0.00 3.86
4843 5379 1.940613 GTTGTTCACCTCGAGTTGCTT 59.059 47.619 12.31 0.00 0.00 3.91
4844 5380 1.139058 AGTTGTTCACCTCGAGTTGCT 59.861 47.619 12.31 0.00 0.00 3.91
4845 5381 1.583054 AGTTGTTCACCTCGAGTTGC 58.417 50.000 12.31 0.00 0.00 4.17
4846 5382 4.142687 ACAAAAGTTGTTCACCTCGAGTTG 60.143 41.667 12.31 7.81 42.22 3.16
4847 5383 4.007659 ACAAAAGTTGTTCACCTCGAGTT 58.992 39.130 12.31 0.00 42.22 3.01
4848 5384 3.374058 CACAAAAGTTGTTCACCTCGAGT 59.626 43.478 12.31 0.00 43.23 4.18
4849 5385 3.621268 TCACAAAAGTTGTTCACCTCGAG 59.379 43.478 5.13 5.13 43.23 4.04
4850 5386 3.601435 TCACAAAAGTTGTTCACCTCGA 58.399 40.909 0.00 0.00 43.23 4.04
4851 5387 4.349663 TTCACAAAAGTTGTTCACCTCG 57.650 40.909 0.00 0.00 43.23 4.63
4863 5399 4.044426 GGTGCTGCTTACTTTCACAAAAG 58.956 43.478 0.00 0.00 46.11 2.27
4864 5400 3.445450 TGGTGCTGCTTACTTTCACAAAA 59.555 39.130 0.00 0.00 0.00 2.44
4865 5401 3.020274 TGGTGCTGCTTACTTTCACAAA 58.980 40.909 0.00 0.00 0.00 2.83
4866 5402 2.649190 TGGTGCTGCTTACTTTCACAA 58.351 42.857 0.00 0.00 0.00 3.33
4867 5403 2.340210 TGGTGCTGCTTACTTTCACA 57.660 45.000 0.00 0.00 0.00 3.58
4868 5404 2.813754 TGATGGTGCTGCTTACTTTCAC 59.186 45.455 0.00 0.00 0.00 3.18
4869 5405 3.138884 TGATGGTGCTGCTTACTTTCA 57.861 42.857 0.00 0.00 0.00 2.69
4870 5406 4.708726 AATGATGGTGCTGCTTACTTTC 57.291 40.909 0.00 0.00 0.00 2.62
4871 5407 6.209391 ACTTAAATGATGGTGCTGCTTACTTT 59.791 34.615 0.00 0.00 0.00 2.66
4872 5408 5.711976 ACTTAAATGATGGTGCTGCTTACTT 59.288 36.000 0.00 0.00 0.00 2.24
4873 5409 5.256474 ACTTAAATGATGGTGCTGCTTACT 58.744 37.500 0.00 0.00 0.00 2.24
4874 5410 5.567138 ACTTAAATGATGGTGCTGCTTAC 57.433 39.130 0.00 0.00 0.00 2.34
4875 5411 6.414732 ACTACTTAAATGATGGTGCTGCTTA 58.585 36.000 0.00 0.00 0.00 3.09
4876 5412 5.256474 ACTACTTAAATGATGGTGCTGCTT 58.744 37.500 0.00 0.00 0.00 3.91
4877 5413 4.848357 ACTACTTAAATGATGGTGCTGCT 58.152 39.130 0.00 0.00 0.00 4.24
4878 5414 5.567138 AACTACTTAAATGATGGTGCTGC 57.433 39.130 0.00 0.00 0.00 5.25
4879 5415 7.464358 GTGTAACTACTTAAATGATGGTGCTG 58.536 38.462 0.00 0.00 0.00 4.41
4880 5416 7.611213 GTGTAACTACTTAAATGATGGTGCT 57.389 36.000 0.00 0.00 0.00 4.40
4898 5434 6.375377 TGTTGGAATTTTATGCGAGTGTAAC 58.625 36.000 0.00 0.00 0.00 2.50
4899 5435 6.561737 TGTTGGAATTTTATGCGAGTGTAA 57.438 33.333 0.00 0.00 0.00 2.41
4900 5436 6.561737 TTGTTGGAATTTTATGCGAGTGTA 57.438 33.333 0.00 0.00 0.00 2.90
4901 5437 5.446143 TTGTTGGAATTTTATGCGAGTGT 57.554 34.783 0.00 0.00 0.00 3.55
4902 5438 6.640499 TCTTTTGTTGGAATTTTATGCGAGTG 59.360 34.615 0.00 0.00 0.00 3.51
4903 5439 6.744112 TCTTTTGTTGGAATTTTATGCGAGT 58.256 32.000 0.00 0.00 0.00 4.18
4904 5440 7.201461 CCATCTTTTGTTGGAATTTTATGCGAG 60.201 37.037 0.00 0.00 40.79 5.03
4905 5441 6.589523 CCATCTTTTGTTGGAATTTTATGCGA 59.410 34.615 0.00 0.00 40.79 5.10
4906 5442 6.589523 TCCATCTTTTGTTGGAATTTTATGCG 59.410 34.615 0.00 0.00 43.24 4.73
4907 5443 7.603784 AGTCCATCTTTTGTTGGAATTTTATGC 59.396 33.333 0.00 0.00 46.41 3.14
4908 5444 9.143631 GAGTCCATCTTTTGTTGGAATTTTATG 57.856 33.333 0.00 0.00 46.41 1.90
4909 5445 8.028938 CGAGTCCATCTTTTGTTGGAATTTTAT 58.971 33.333 0.00 0.00 46.41 1.40
4910 5446 7.367285 CGAGTCCATCTTTTGTTGGAATTTTA 58.633 34.615 0.00 0.00 46.41 1.52
4911 5447 6.215845 CGAGTCCATCTTTTGTTGGAATTTT 58.784 36.000 0.00 0.00 46.41 1.82
4912 5448 5.772521 CGAGTCCATCTTTTGTTGGAATTT 58.227 37.500 0.00 0.00 46.41 1.82
4913 5449 4.321230 GCGAGTCCATCTTTTGTTGGAATT 60.321 41.667 0.00 0.00 46.41 2.17
4914 5450 3.191371 GCGAGTCCATCTTTTGTTGGAAT 59.809 43.478 0.00 0.00 46.41 3.01
4915 5451 2.552315 GCGAGTCCATCTTTTGTTGGAA 59.448 45.455 0.00 0.00 46.41 3.53
4916 5452 2.151202 GCGAGTCCATCTTTTGTTGGA 58.849 47.619 0.00 0.00 43.79 3.53
4917 5453 1.879380 TGCGAGTCCATCTTTTGTTGG 59.121 47.619 0.00 0.00 39.93 3.77
4918 5454 3.558505 CTTGCGAGTCCATCTTTTGTTG 58.441 45.455 0.00 0.00 0.00 3.33
4919 5455 2.554032 CCTTGCGAGTCCATCTTTTGTT 59.446 45.455 0.00 0.00 0.00 2.83
4920 5456 2.154462 CCTTGCGAGTCCATCTTTTGT 58.846 47.619 0.00 0.00 0.00 2.83
4921 5457 2.426522 TCCTTGCGAGTCCATCTTTTG 58.573 47.619 0.00 0.00 0.00 2.44
4922 5458 2.859165 TCCTTGCGAGTCCATCTTTT 57.141 45.000 0.00 0.00 0.00 2.27
4923 5459 3.274288 GAATCCTTGCGAGTCCATCTTT 58.726 45.455 0.00 0.00 28.99 2.52
4924 5460 2.739932 CGAATCCTTGCGAGTCCATCTT 60.740 50.000 0.00 0.00 31.71 2.40
4925 5461 1.202463 CGAATCCTTGCGAGTCCATCT 60.202 52.381 0.00 0.00 31.71 2.90
4926 5462 1.202417 TCGAATCCTTGCGAGTCCATC 60.202 52.381 0.00 0.00 31.71 3.51
4927 5463 0.824109 TCGAATCCTTGCGAGTCCAT 59.176 50.000 0.00 0.00 31.71 3.41
4928 5464 0.606096 TTCGAATCCTTGCGAGTCCA 59.394 50.000 0.00 0.00 37.85 4.02
4929 5465 1.000145 GTTCGAATCCTTGCGAGTCC 59.000 55.000 0.00 0.00 37.85 3.85
4930 5466 1.921230 GAGTTCGAATCCTTGCGAGTC 59.079 52.381 0.00 0.00 37.85 3.36
4931 5467 1.272490 TGAGTTCGAATCCTTGCGAGT 59.728 47.619 0.00 0.00 37.85 4.18
4932 5468 1.996292 TGAGTTCGAATCCTTGCGAG 58.004 50.000 0.00 0.00 37.85 5.03
4933 5469 2.066262 GTTGAGTTCGAATCCTTGCGA 58.934 47.619 0.00 0.00 34.32 5.10
4934 5470 1.798223 TGTTGAGTTCGAATCCTTGCG 59.202 47.619 0.00 0.00 0.00 4.85
4935 5471 2.095718 GGTGTTGAGTTCGAATCCTTGC 60.096 50.000 0.00 0.00 0.00 4.01
4936 5472 3.403038 AGGTGTTGAGTTCGAATCCTTG 58.597 45.455 0.00 0.00 0.00 3.61
4937 5473 3.557264 GGAGGTGTTGAGTTCGAATCCTT 60.557 47.826 0.00 0.00 0.00 3.36
4938 5474 2.028020 GGAGGTGTTGAGTTCGAATCCT 60.028 50.000 0.00 0.00 0.00 3.24
4939 5475 2.028020 AGGAGGTGTTGAGTTCGAATCC 60.028 50.000 0.00 0.33 0.00 3.01
4940 5476 2.996621 CAGGAGGTGTTGAGTTCGAATC 59.003 50.000 0.00 0.84 0.00 2.52
4941 5477 2.289694 CCAGGAGGTGTTGAGTTCGAAT 60.290 50.000 0.00 0.00 0.00 3.34
4942 5478 1.070134 CCAGGAGGTGTTGAGTTCGAA 59.930 52.381 0.00 0.00 0.00 3.71
4943 5479 0.679505 CCAGGAGGTGTTGAGTTCGA 59.320 55.000 0.00 0.00 0.00 3.71
4944 5480 3.217242 CCAGGAGGTGTTGAGTTCG 57.783 57.895 0.00 0.00 0.00 3.95
4955 5491 1.437986 GCTGCGTACTACCAGGAGG 59.562 63.158 0.00 0.00 42.21 4.30
4956 5492 1.064296 CGCTGCGTACTACCAGGAG 59.936 63.158 14.93 0.00 0.00 3.69
4957 5493 2.412323 CCGCTGCGTACTACCAGGA 61.412 63.158 21.59 0.00 0.00 3.86
4958 5494 1.378882 TACCGCTGCGTACTACCAGG 61.379 60.000 21.59 4.46 0.00 4.45
4959 5495 0.248377 GTACCGCTGCGTACTACCAG 60.248 60.000 21.59 5.21 36.48 4.00
4960 5496 0.959867 TGTACCGCTGCGTACTACCA 60.960 55.000 21.59 5.72 39.51 3.25
4961 5497 0.383231 ATGTACCGCTGCGTACTACC 59.617 55.000 21.59 3.13 39.51 3.18
4962 5498 3.038710 GTTATGTACCGCTGCGTACTAC 58.961 50.000 21.59 16.03 39.51 2.73
4963 5499 2.033299 GGTTATGTACCGCTGCGTACTA 59.967 50.000 21.59 12.98 39.51 1.82
4964 5500 1.202336 GGTTATGTACCGCTGCGTACT 60.202 52.381 21.59 13.69 39.51 2.73
4965 5501 1.203065 GGTTATGTACCGCTGCGTAC 58.797 55.000 21.59 20.72 37.12 3.67
4966 5502 3.646650 GGTTATGTACCGCTGCGTA 57.353 52.632 21.59 10.44 37.12 4.42
4967 5503 4.507879 GGTTATGTACCGCTGCGT 57.492 55.556 21.59 11.45 37.12 5.24
4981 5517 9.921637 ACGTCAAAATTATGTATTCAATTGGTT 57.078 25.926 5.42 0.00 0.00 3.67
4982 5518 9.567848 GACGTCAAAATTATGTATTCAATTGGT 57.432 29.630 11.55 0.00 0.00 3.67
4983 5519 9.019764 GGACGTCAAAATTATGTATTCAATTGG 57.980 33.333 18.91 0.00 0.00 3.16
4984 5520 9.566530 TGGACGTCAAAATTATGTATTCAATTG 57.433 29.630 18.91 0.00 0.00 2.32
4987 5523 9.619316 CTTTGGACGTCAAAATTATGTATTCAA 57.381 29.630 18.23 4.48 43.88 2.69
4988 5524 7.753132 GCTTTGGACGTCAAAATTATGTATTCA 59.247 33.333 18.23 0.00 43.88 2.57
4989 5525 7.753132 TGCTTTGGACGTCAAAATTATGTATTC 59.247 33.333 18.23 0.00 43.88 1.75
4990 5526 7.598278 TGCTTTGGACGTCAAAATTATGTATT 58.402 30.769 18.23 0.00 43.88 1.89
4991 5527 7.151999 TGCTTTGGACGTCAAAATTATGTAT 57.848 32.000 18.23 0.00 43.88 2.29
4992 5528 6.561737 TGCTTTGGACGTCAAAATTATGTA 57.438 33.333 18.23 4.03 43.88 2.29
4993 5529 5.446143 TGCTTTGGACGTCAAAATTATGT 57.554 34.783 18.23 0.00 43.88 2.29
4994 5530 5.220265 GCATGCTTTGGACGTCAAAATTATG 60.220 40.000 24.10 24.10 43.88 1.90
4995 5531 4.864247 GCATGCTTTGGACGTCAAAATTAT 59.136 37.500 18.23 12.40 43.88 1.28
4996 5532 4.233789 GCATGCTTTGGACGTCAAAATTA 58.766 39.130 18.23 10.74 43.88 1.40
4997 5533 3.059166 GCATGCTTTGGACGTCAAAATT 58.941 40.909 18.23 4.45 43.88 1.82
4998 5534 2.035704 TGCATGCTTTGGACGTCAAAAT 59.964 40.909 18.23 1.32 43.88 1.82
4999 5535 1.406898 TGCATGCTTTGGACGTCAAAA 59.593 42.857 20.33 17.04 43.88 2.44
5000 5536 1.001487 CTGCATGCTTTGGACGTCAAA 60.001 47.619 20.33 10.11 42.50 2.69
5001 5537 0.592637 CTGCATGCTTTGGACGTCAA 59.407 50.000 20.33 2.10 0.00 3.18
5002 5538 1.855213 GCTGCATGCTTTGGACGTCA 61.855 55.000 20.33 0.27 38.95 4.35
5003 5539 1.154150 GCTGCATGCTTTGGACGTC 60.154 57.895 20.33 7.13 38.95 4.34
5004 5540 1.898094 TGCTGCATGCTTTGGACGT 60.898 52.632 20.33 0.00 43.37 4.34
5005 5541 1.443194 GTGCTGCATGCTTTGGACG 60.443 57.895 20.33 0.00 43.37 4.79
5006 5542 0.388134 CTGTGCTGCATGCTTTGGAC 60.388 55.000 20.33 18.83 43.37 4.02
5007 5543 1.961378 CTGTGCTGCATGCTTTGGA 59.039 52.632 20.33 7.61 43.37 3.53
5008 5544 1.736645 GCTGTGCTGCATGCTTTGG 60.737 57.895 20.33 7.63 43.37 3.28
5009 5545 0.319555 AAGCTGTGCTGCATGCTTTG 60.320 50.000 27.76 10.18 39.62 2.77
5010 5546 1.250328 TAAGCTGTGCTGCATGCTTT 58.750 45.000 33.43 23.22 39.62 3.51
5011 5547 1.471119 ATAAGCTGTGCTGCATGCTT 58.529 45.000 32.03 32.03 39.62 3.91
5012 5548 2.336945 TATAAGCTGTGCTGCATGCT 57.663 45.000 20.33 21.53 39.62 3.79
5013 5549 3.637998 ATTATAAGCTGTGCTGCATGC 57.362 42.857 11.82 11.82 39.62 4.06
5014 5550 6.140786 CAGTTATTATAAGCTGTGCTGCATG 58.859 40.000 5.27 3.28 39.62 4.06
5015 5551 6.309712 CAGTTATTATAAGCTGTGCTGCAT 57.690 37.500 5.27 0.00 39.62 3.96
5016 5552 5.739752 CAGTTATTATAAGCTGTGCTGCA 57.260 39.130 0.00 0.00 39.62 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.