Multiple sequence alignment - TraesCS3A01G016100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G016100 chr3A 100.000 2372 0 0 1 2372 10498287 10495916 0.000000e+00 4381
1 TraesCS3A01G016100 chr3A 88.843 968 92 3 657 1608 10271525 10272492 0.000000e+00 1175
2 TraesCS3A01G016100 chr3A 84.845 871 112 11 657 1526 38259477 38258626 0.000000e+00 859
3 TraesCS3A01G016100 chr3A 77.244 624 96 28 4 599 10269635 10270240 8.180000e-85 324
4 TraesCS3A01G016100 chrUn 95.000 2100 64 11 1 2071 35542985 35545072 0.000000e+00 3258
5 TraesCS3A01G016100 chrUn 95.000 2100 64 11 1 2071 244205155 244203068 0.000000e+00 3258
6 TraesCS3A01G016100 chrUn 90.683 1449 92 12 657 2071 35685020 35683581 0.000000e+00 1888
7 TraesCS3A01G016100 chr3D 90.807 1153 98 5 657 1803 4468640 4469790 0.000000e+00 1535
8 TraesCS3A01G016100 chr3D 84.914 875 113 13 657 1530 28500205 28499349 0.000000e+00 867
9 TraesCS3A01G016100 chr3D 92.857 70 3 2 1797 1866 4469833 4469900 1.500000e-17 100
10 TraesCS3A01G016100 chr3B 87.302 756 96 0 657 1412 47459596 47458841 0.000000e+00 865
11 TraesCS3A01G016100 chr2D 85.006 807 116 5 657 1460 533857833 533858637 0.000000e+00 815


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G016100 chr3A 10495916 10498287 2371 True 4381.0 4381 100.0000 1 2372 1 chr3A.!!$R1 2371
1 TraesCS3A01G016100 chr3A 38258626 38259477 851 True 859.0 859 84.8450 657 1526 1 chr3A.!!$R2 869
2 TraesCS3A01G016100 chr3A 10269635 10272492 2857 False 749.5 1175 83.0435 4 1608 2 chr3A.!!$F1 1604
3 TraesCS3A01G016100 chrUn 35542985 35545072 2087 False 3258.0 3258 95.0000 1 2071 1 chrUn.!!$F1 2070
4 TraesCS3A01G016100 chrUn 244203068 244205155 2087 True 3258.0 3258 95.0000 1 2071 1 chrUn.!!$R2 2070
5 TraesCS3A01G016100 chrUn 35683581 35685020 1439 True 1888.0 1888 90.6830 657 2071 1 chrUn.!!$R1 1414
6 TraesCS3A01G016100 chr3D 28499349 28500205 856 True 867.0 867 84.9140 657 1530 1 chr3D.!!$R1 873
7 TraesCS3A01G016100 chr3D 4468640 4469900 1260 False 817.5 1535 91.8320 657 1866 2 chr3D.!!$F1 1209
8 TraesCS3A01G016100 chr3B 47458841 47459596 755 True 865.0 865 87.3020 657 1412 1 chr3B.!!$R1 755
9 TraesCS3A01G016100 chr2D 533857833 533858637 804 False 815.0 815 85.0060 657 1460 1 chr2D.!!$F1 803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 440 4.751767 AGAACTGGAGCTGATAAAGGAG 57.248 45.455 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2236 3604 0.027979 CACGCATTGTTATGAGCCGG 59.972 55.0 0.0 0.0 35.25 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 6.646240 GGACTTTACATACACTTCCGTAACAA 59.354 38.462 0.00 0.00 0.00 2.83
244 247 4.756084 ATACAGCTTTGAACTGCTCAAC 57.244 40.909 0.00 0.00 43.90 3.18
384 405 7.067494 ACCAAAATGAGCATATGAGAAGGTAAC 59.933 37.037 6.97 0.00 0.00 2.50
419 440 4.751767 AGAACTGGAGCTGATAAAGGAG 57.248 45.455 0.00 0.00 0.00 3.69
511 537 5.423015 AGAGAATGTACAACTATGCAGTGG 58.577 41.667 0.00 0.00 34.36 4.00
587 613 8.706035 GTTTTCTACTACTCAATTAGCGTTTGA 58.294 33.333 0.30 0.30 0.00 2.69
599 625 5.856126 TTAGCGTTTGAGTTGTAAGATGG 57.144 39.130 0.00 0.00 0.00 3.51
897 2150 5.713861 GCTCATTGATAGGGAAATAAGCCAT 59.286 40.000 0.00 0.00 0.00 4.40
1035 2288 3.002348 GTGGAAGAAAGAACCTTGACACG 59.998 47.826 0.00 0.00 0.00 4.49
1036 2289 2.031944 GGAAGAAAGAACCTTGACACGC 60.032 50.000 0.00 0.00 0.00 5.34
1040 2293 1.990160 AAGAACCTTGACACGCCCCA 61.990 55.000 0.00 0.00 0.00 4.96
1041 2294 1.527380 GAACCTTGACACGCCCCAA 60.527 57.895 0.00 0.00 0.00 4.12
1159 2412 6.623549 GCAAGCACAAGAGCAAGATGTAATTA 60.624 38.462 0.00 0.00 36.85 1.40
1200 2453 3.243805 TGTGGTGTTTGCAGATTGATTGG 60.244 43.478 0.00 0.00 0.00 3.16
1221 2474 4.217550 TGGAAAAGAAGGCCTAAAATGTCG 59.782 41.667 5.16 0.00 0.00 4.35
1340 2593 2.343758 GACCTCTTCGGCTGCACA 59.656 61.111 0.50 0.00 35.61 4.57
1343 2596 1.817099 CCTCTTCGGCTGCACATCC 60.817 63.158 0.50 0.00 0.00 3.51
1395 2648 4.897509 TGAGACAATCCTGACAAGACAT 57.102 40.909 0.00 0.00 0.00 3.06
1635 2917 8.057536 ACTAATGTAGGTCTGTTTCTAGTCAG 57.942 38.462 0.00 0.00 0.00 3.51
1681 2963 6.072508 TGTTCTAAAATGCTAGAAACAGCTGG 60.073 38.462 19.93 0.00 42.30 4.85
1843 3174 3.857157 TCAGTTAGGAACCACAAGCTT 57.143 42.857 0.00 0.00 0.00 3.74
1990 3358 2.246719 GGAGGTTTCCCGATGAGATG 57.753 55.000 0.00 0.00 37.53 2.90
2036 3404 1.281899 CAGCGGCAGTAGAAAGTAGC 58.718 55.000 1.45 0.00 0.00 3.58
2056 3424 2.961768 CTGTGGCGGCGGAAATTT 59.038 55.556 9.78 0.00 0.00 1.82
2057 3425 1.444212 CTGTGGCGGCGGAAATTTG 60.444 57.895 9.78 0.00 0.00 2.32
2058 3426 2.809174 GTGGCGGCGGAAATTTGC 60.809 61.111 9.78 0.00 0.00 3.68
2059 3427 3.298404 TGGCGGCGGAAATTTGCA 61.298 55.556 9.78 0.00 0.00 4.08
2060 3428 2.506881 GGCGGCGGAAATTTGCAG 60.507 61.111 9.78 3.62 0.00 4.41
2061 3429 2.566010 GCGGCGGAAATTTGCAGA 59.434 55.556 9.78 0.00 0.00 4.26
2063 3431 1.578926 CGGCGGAAATTTGCAGACA 59.421 52.632 10.49 0.00 0.00 3.41
2071 3439 0.242017 AATTTGCAGACAGGAAGCGC 59.758 50.000 0.00 0.00 0.00 5.92
2072 3440 0.890542 ATTTGCAGACAGGAAGCGCA 60.891 50.000 11.47 0.00 0.00 6.09
2073 3441 1.785041 TTTGCAGACAGGAAGCGCAC 61.785 55.000 11.47 2.54 31.10 5.34
2074 3442 3.782244 GCAGACAGGAAGCGCACG 61.782 66.667 11.47 0.00 0.00 5.34
2075 3443 3.114616 CAGACAGGAAGCGCACGG 61.115 66.667 11.47 2.41 0.00 4.94
2076 3444 4.379243 AGACAGGAAGCGCACGGG 62.379 66.667 11.47 0.00 0.00 5.28
2093 3461 3.190878 GCGAACTGGAGCCATTGG 58.809 61.111 0.00 0.00 0.00 3.16
2094 3462 2.409870 GCGAACTGGAGCCATTGGG 61.410 63.158 4.53 0.00 37.18 4.12
2095 3463 1.002134 CGAACTGGAGCCATTGGGT 60.002 57.895 7.21 7.21 36.17 4.51
2101 3469 4.645809 GAGCCATTGGGTCCAGTC 57.354 61.111 21.80 0.00 43.62 3.51
2102 3470 1.450312 GAGCCATTGGGTCCAGTCG 60.450 63.158 21.80 0.00 43.62 4.18
2103 3471 3.134127 GCCATTGGGTCCAGTCGC 61.134 66.667 4.53 0.00 36.17 5.19
2104 3472 2.438434 CCATTGGGTCCAGTCGCC 60.438 66.667 0.00 0.00 0.00 5.54
2105 3473 2.819595 CATTGGGTCCAGTCGCCG 60.820 66.667 0.00 0.00 0.00 6.46
2106 3474 4.096003 ATTGGGTCCAGTCGCCGG 62.096 66.667 0.00 0.00 0.00 6.13
2131 3499 3.403558 GCTGGGGAGTGAGGGGAC 61.404 72.222 0.00 0.00 0.00 4.46
2132 3500 3.077556 CTGGGGAGTGAGGGGACG 61.078 72.222 0.00 0.00 0.00 4.79
2133 3501 4.715130 TGGGGAGTGAGGGGACGG 62.715 72.222 0.00 0.00 0.00 4.79
2138 3506 4.371417 AGTGAGGGGACGGGCGTA 62.371 66.667 0.00 0.00 0.00 4.42
2139 3507 4.139234 GTGAGGGGACGGGCGTAC 62.139 72.222 0.00 0.00 0.00 3.67
2152 3520 4.814294 CGTACGGGCCCTGCTGAC 62.814 72.222 22.43 9.17 0.00 3.51
2153 3521 3.391382 GTACGGGCCCTGCTGACT 61.391 66.667 22.43 0.00 0.00 3.41
2154 3522 2.606519 TACGGGCCCTGCTGACTT 60.607 61.111 22.43 0.00 0.00 3.01
2155 3523 2.221299 TACGGGCCCTGCTGACTTT 61.221 57.895 22.43 0.00 0.00 2.66
2156 3524 2.180159 TACGGGCCCTGCTGACTTTC 62.180 60.000 22.43 0.00 0.00 2.62
2157 3525 2.759795 GGGCCCTGCTGACTTTCT 59.240 61.111 17.04 0.00 0.00 2.52
2158 3526 1.377856 GGGCCCTGCTGACTTTCTC 60.378 63.158 17.04 0.00 0.00 2.87
2159 3527 1.377856 GGCCCTGCTGACTTTCTCC 60.378 63.158 0.00 0.00 0.00 3.71
2160 3528 1.377856 GCCCTGCTGACTTTCTCCC 60.378 63.158 0.00 0.00 0.00 4.30
2161 3529 1.301293 CCCTGCTGACTTTCTCCCC 59.699 63.158 0.00 0.00 0.00 4.81
2162 3530 1.301293 CCTGCTGACTTTCTCCCCC 59.699 63.158 0.00 0.00 0.00 5.40
2163 3531 1.204113 CCTGCTGACTTTCTCCCCCT 61.204 60.000 0.00 0.00 0.00 4.79
2164 3532 0.035630 CTGCTGACTTTCTCCCCCTG 60.036 60.000 0.00 0.00 0.00 4.45
2165 3533 1.301293 GCTGACTTTCTCCCCCTGG 59.699 63.158 0.00 0.00 0.00 4.45
2166 3534 1.492993 GCTGACTTTCTCCCCCTGGT 61.493 60.000 0.00 0.00 0.00 4.00
2167 3535 0.615850 CTGACTTTCTCCCCCTGGTC 59.384 60.000 0.00 0.00 0.00 4.02
2168 3536 1.192146 TGACTTTCTCCCCCTGGTCG 61.192 60.000 0.00 0.00 0.00 4.79
2169 3537 0.903454 GACTTTCTCCCCCTGGTCGA 60.903 60.000 0.00 0.00 0.00 4.20
2170 3538 0.252742 ACTTTCTCCCCCTGGTCGAT 60.253 55.000 0.00 0.00 0.00 3.59
2171 3539 0.466124 CTTTCTCCCCCTGGTCGATC 59.534 60.000 0.00 0.00 0.00 3.69
2172 3540 0.042731 TTTCTCCCCCTGGTCGATCT 59.957 55.000 0.00 0.00 0.00 2.75
2173 3541 0.687757 TTCTCCCCCTGGTCGATCTG 60.688 60.000 0.00 0.00 0.00 2.90
2174 3542 2.041922 TCCCCCTGGTCGATCTGG 60.042 66.667 14.38 14.38 0.00 3.86
2175 3543 3.164269 CCCCCTGGTCGATCTGGG 61.164 72.222 29.05 29.05 43.18 4.45
2176 3544 3.866582 CCCCTGGTCGATCTGGGC 61.867 72.222 30.24 0.00 42.49 5.36
2177 3545 3.866582 CCCTGGTCGATCTGGGCC 61.867 72.222 25.79 4.02 38.72 5.80
2178 3546 3.083349 CCTGGTCGATCTGGGCCA 61.083 66.667 13.57 5.85 0.00 5.36
2179 3547 2.187946 CTGGTCGATCTGGGCCAC 59.812 66.667 0.00 0.00 0.00 5.01
2180 3548 3.723235 CTGGTCGATCTGGGCCACG 62.723 68.421 0.00 5.17 0.00 4.94
2181 3549 3.458163 GGTCGATCTGGGCCACGA 61.458 66.667 13.05 13.05 0.00 4.35
2182 3550 2.577059 GTCGATCTGGGCCACGAA 59.423 61.111 17.87 0.14 36.57 3.85
2183 3551 1.519455 GTCGATCTGGGCCACGAAG 60.519 63.158 17.87 10.91 36.57 3.79
2184 3552 2.892425 CGATCTGGGCCACGAAGC 60.892 66.667 0.00 1.09 0.00 3.86
2185 3553 2.586792 GATCTGGGCCACGAAGCT 59.413 61.111 0.00 0.00 0.00 3.74
2186 3554 1.078143 GATCTGGGCCACGAAGCTT 60.078 57.895 0.00 0.00 0.00 3.74
2187 3555 0.678048 GATCTGGGCCACGAAGCTTT 60.678 55.000 0.00 0.00 0.00 3.51
2188 3556 0.678048 ATCTGGGCCACGAAGCTTTC 60.678 55.000 0.00 0.00 0.00 2.62
2201 3569 3.999769 GAAGCTTTCGAATTAACGGACC 58.000 45.455 0.00 0.00 0.00 4.46
2202 3570 2.353323 AGCTTTCGAATTAACGGACCC 58.647 47.619 0.00 0.00 0.00 4.46
2203 3571 2.078392 GCTTTCGAATTAACGGACCCA 58.922 47.619 0.00 0.00 0.00 4.51
2204 3572 2.681344 GCTTTCGAATTAACGGACCCAT 59.319 45.455 0.00 0.00 0.00 4.00
2205 3573 3.242641 GCTTTCGAATTAACGGACCCATC 60.243 47.826 0.00 0.00 0.00 3.51
2206 3574 3.899052 TTCGAATTAACGGACCCATCT 57.101 42.857 0.00 0.00 0.00 2.90
2207 3575 3.899052 TCGAATTAACGGACCCATCTT 57.101 42.857 0.00 0.00 0.00 2.40
2208 3576 3.788937 TCGAATTAACGGACCCATCTTC 58.211 45.455 0.00 0.00 0.00 2.87
2209 3577 2.870411 CGAATTAACGGACCCATCTTCC 59.130 50.000 0.00 0.00 0.00 3.46
2210 3578 3.431766 CGAATTAACGGACCCATCTTCCT 60.432 47.826 0.00 0.00 0.00 3.36
2211 3579 4.202182 CGAATTAACGGACCCATCTTCCTA 60.202 45.833 0.00 0.00 0.00 2.94
2212 3580 5.510861 CGAATTAACGGACCCATCTTCCTAT 60.511 44.000 0.00 0.00 0.00 2.57
2213 3581 4.682778 TTAACGGACCCATCTTCCTATG 57.317 45.455 0.00 0.00 0.00 2.23
2214 3582 2.176247 ACGGACCCATCTTCCTATGT 57.824 50.000 0.00 0.00 0.00 2.29
2215 3583 1.762957 ACGGACCCATCTTCCTATGTG 59.237 52.381 0.00 0.00 0.00 3.21
2216 3584 1.070758 CGGACCCATCTTCCTATGTGG 59.929 57.143 0.00 0.00 37.10 4.17
2218 3586 3.733709 CCCATCTTCCTATGTGGGC 57.266 57.895 0.00 0.00 44.32 5.36
2219 3587 0.111253 CCCATCTTCCTATGTGGGCC 59.889 60.000 0.00 0.00 44.32 5.80
2220 3588 0.111253 CCATCTTCCTATGTGGGCCC 59.889 60.000 17.59 17.59 36.20 5.80
2221 3589 0.250467 CATCTTCCTATGTGGGCCCG 60.250 60.000 19.37 1.06 36.20 6.13
2222 3590 2.056906 ATCTTCCTATGTGGGCCCGC 62.057 60.000 29.34 29.34 36.20 6.13
2223 3591 4.169696 TTCCTATGTGGGCCCGCG 62.170 66.667 29.78 15.90 36.20 6.46
2225 3593 4.609018 CCTATGTGGGCCCGCGAG 62.609 72.222 29.78 26.53 0.00 5.03
2226 3594 3.536917 CTATGTGGGCCCGCGAGA 61.537 66.667 29.78 13.85 0.00 4.04
2227 3595 3.506059 CTATGTGGGCCCGCGAGAG 62.506 68.421 29.78 21.41 0.00 3.20
2239 3607 4.933064 CGAGAGCTTAGCGGCCGG 62.933 72.222 29.38 11.47 0.00 6.13
2249 3617 2.822255 GCGGCCGGCTCATAACAA 60.822 61.111 29.38 0.00 39.11 2.83
2250 3618 2.186826 GCGGCCGGCTCATAACAAT 61.187 57.895 29.38 0.00 39.11 2.71
2251 3619 1.648720 CGGCCGGCTCATAACAATG 59.351 57.895 28.56 0.00 0.00 2.82
2252 3620 1.360192 GGCCGGCTCATAACAATGC 59.640 57.895 28.56 0.00 0.00 3.56
2253 3621 1.009675 GCCGGCTCATAACAATGCG 60.010 57.895 22.15 0.00 0.00 4.73
2254 3622 1.714899 GCCGGCTCATAACAATGCGT 61.715 55.000 22.15 0.00 0.00 5.24
2255 3623 0.027979 CCGGCTCATAACAATGCGTG 59.972 55.000 0.00 0.00 0.00 5.34
2256 3624 1.006086 CGGCTCATAACAATGCGTGA 58.994 50.000 0.00 0.00 0.00 4.35
2257 3625 1.004610 CGGCTCATAACAATGCGTGAG 60.005 52.381 5.97 5.97 40.71 3.51
2270 3638 2.166270 CGTGAGCTTTTGAGAGGGC 58.834 57.895 0.00 0.00 0.00 5.19
2271 3639 1.630244 CGTGAGCTTTTGAGAGGGCG 61.630 60.000 0.00 0.00 0.00 6.13
2272 3640 0.603975 GTGAGCTTTTGAGAGGGCGT 60.604 55.000 0.00 0.00 0.00 5.68
2273 3641 0.108585 TGAGCTTTTGAGAGGGCGTT 59.891 50.000 0.00 0.00 0.00 4.84
2274 3642 1.239347 GAGCTTTTGAGAGGGCGTTT 58.761 50.000 0.00 0.00 0.00 3.60
2275 3643 1.609072 GAGCTTTTGAGAGGGCGTTTT 59.391 47.619 0.00 0.00 0.00 2.43
2276 3644 2.031870 AGCTTTTGAGAGGGCGTTTTT 58.968 42.857 0.00 0.00 0.00 1.94
2299 3667 5.662211 TTTAGTTGACCAGTTTACGAAGC 57.338 39.130 0.00 0.00 0.00 3.86
2300 3668 3.470645 AGTTGACCAGTTTACGAAGCT 57.529 42.857 0.00 0.00 0.00 3.74
2301 3669 3.131396 AGTTGACCAGTTTACGAAGCTG 58.869 45.455 0.00 0.00 0.00 4.24
2302 3670 3.128349 GTTGACCAGTTTACGAAGCTGA 58.872 45.455 11.14 0.00 32.39 4.26
2303 3671 2.750948 TGACCAGTTTACGAAGCTGAC 58.249 47.619 11.14 7.07 32.39 3.51
2304 3672 2.101750 TGACCAGTTTACGAAGCTGACA 59.898 45.455 11.14 8.77 32.39 3.58
2305 3673 2.731976 GACCAGTTTACGAAGCTGACAG 59.268 50.000 11.14 0.00 32.39 3.51
2306 3674 2.102588 ACCAGTTTACGAAGCTGACAGT 59.897 45.455 3.99 0.00 32.39 3.55
2307 3675 3.131396 CCAGTTTACGAAGCTGACAGTT 58.869 45.455 3.99 0.00 32.39 3.16
2308 3676 3.184581 CCAGTTTACGAAGCTGACAGTTC 59.815 47.826 3.99 6.10 32.39 3.01
2309 3677 4.051922 CAGTTTACGAAGCTGACAGTTCT 58.948 43.478 3.99 0.00 32.39 3.01
2310 3678 5.220381 CAGTTTACGAAGCTGACAGTTCTA 58.780 41.667 3.99 0.52 32.39 2.10
2311 3679 5.864474 CAGTTTACGAAGCTGACAGTTCTAT 59.136 40.000 3.99 1.80 32.39 1.98
2312 3680 6.366332 CAGTTTACGAAGCTGACAGTTCTATT 59.634 38.462 3.99 0.00 32.39 1.73
2313 3681 6.929606 AGTTTACGAAGCTGACAGTTCTATTT 59.070 34.615 3.99 0.00 0.00 1.40
2314 3682 6.946229 TTACGAAGCTGACAGTTCTATTTC 57.054 37.500 3.99 0.00 0.00 2.17
2315 3683 4.246458 ACGAAGCTGACAGTTCTATTTCC 58.754 43.478 3.99 0.00 0.00 3.13
2316 3684 4.021016 ACGAAGCTGACAGTTCTATTTCCT 60.021 41.667 3.99 0.00 0.00 3.36
2317 3685 4.328440 CGAAGCTGACAGTTCTATTTCCTG 59.672 45.833 3.99 0.00 0.00 3.86
2318 3686 4.899352 AGCTGACAGTTCTATTTCCTGT 57.101 40.909 3.99 0.00 41.90 4.00
2319 3687 4.573900 AGCTGACAGTTCTATTTCCTGTG 58.426 43.478 3.99 0.00 39.43 3.66
2320 3688 4.040952 AGCTGACAGTTCTATTTCCTGTGT 59.959 41.667 3.99 0.00 39.43 3.72
2321 3689 4.153117 GCTGACAGTTCTATTTCCTGTGTG 59.847 45.833 3.99 0.00 39.43 3.82
2322 3690 5.290493 TGACAGTTCTATTTCCTGTGTGT 57.710 39.130 0.00 0.00 39.43 3.72
2323 3691 5.680619 TGACAGTTCTATTTCCTGTGTGTT 58.319 37.500 0.00 0.00 39.43 3.32
2324 3692 6.119536 TGACAGTTCTATTTCCTGTGTGTTT 58.880 36.000 0.00 0.00 39.43 2.83
2325 3693 6.260050 TGACAGTTCTATTTCCTGTGTGTTTC 59.740 38.462 0.00 0.00 39.43 2.78
2326 3694 6.357367 ACAGTTCTATTTCCTGTGTGTTTCT 58.643 36.000 0.00 0.00 38.00 2.52
2327 3695 7.506114 ACAGTTCTATTTCCTGTGTGTTTCTA 58.494 34.615 0.00 0.00 38.00 2.10
2328 3696 8.157476 ACAGTTCTATTTCCTGTGTGTTTCTAT 58.843 33.333 0.00 0.00 38.00 1.98
2329 3697 9.653287 CAGTTCTATTTCCTGTGTGTTTCTATA 57.347 33.333 0.00 0.00 0.00 1.31
2332 3700 9.529325 TTCTATTTCCTGTGTGTTTCTATATCG 57.471 33.333 0.00 0.00 0.00 2.92
2333 3701 8.909923 TCTATTTCCTGTGTGTTTCTATATCGA 58.090 33.333 0.00 0.00 0.00 3.59
2334 3702 9.698309 CTATTTCCTGTGTGTTTCTATATCGAT 57.302 33.333 2.16 2.16 0.00 3.59
2335 3703 8.964476 ATTTCCTGTGTGTTTCTATATCGATT 57.036 30.769 1.71 0.00 0.00 3.34
2336 3704 8.786826 TTTCCTGTGTGTTTCTATATCGATTT 57.213 30.769 1.71 0.00 0.00 2.17
2337 3705 8.786826 TTCCTGTGTGTTTCTATATCGATTTT 57.213 30.769 1.71 0.00 0.00 1.82
2338 3706 8.786826 TCCTGTGTGTTTCTATATCGATTTTT 57.213 30.769 1.71 0.00 0.00 1.94
2368 3736 8.514330 TTTTATTTTCCCAATATACGCTGACT 57.486 30.769 0.00 0.00 0.00 3.41
2369 3737 8.514330 TTTATTTTCCCAATATACGCTGACTT 57.486 30.769 0.00 0.00 0.00 3.01
2370 3738 5.811399 TTTTCCCAATATACGCTGACTTG 57.189 39.130 0.00 0.00 0.00 3.16
2371 3739 4.481368 TTCCCAATATACGCTGACTTGT 57.519 40.909 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.702270 AAAGTCCATTTCCTGCCCTT 57.298 45.000 0.00 0.00 0.00 3.95
384 405 0.037605 AGTTCTTTCACCCTACGCGG 60.038 55.000 12.47 0.00 0.00 6.46
419 440 5.703130 GGAGGTATCATTGGACTTATCAAGC 59.297 44.000 0.00 0.00 0.00 4.01
587 613 4.020573 TCGTTGATGGTCCATCTTACAACT 60.021 41.667 28.23 0.00 41.06 3.16
599 625 8.310406 TCATCACATTATATTCGTTGATGGTC 57.690 34.615 8.98 0.00 34.44 4.02
897 2150 4.081642 GTGCCTCTCATTCTAGTAACCACA 60.082 45.833 0.00 0.00 0.00 4.17
1035 2288 0.254178 TGCTCTCTTCAGATTGGGGC 59.746 55.000 0.00 0.00 0.00 5.80
1036 2289 2.486907 GGATGCTCTCTTCAGATTGGGG 60.487 54.545 0.00 0.00 0.00 4.96
1040 2293 5.633655 AAGATGGATGCTCTCTTCAGATT 57.366 39.130 0.00 0.00 0.00 2.40
1041 2294 6.938698 ATAAGATGGATGCTCTCTTCAGAT 57.061 37.500 6.03 0.00 31.89 2.90
1159 2412 4.579340 CCACATTGCTAGCTTCATCATCTT 59.421 41.667 17.23 0.00 0.00 2.40
1200 2453 4.457949 TCCGACATTTTAGGCCTTCTTTTC 59.542 41.667 12.58 0.00 0.00 2.29
1221 2474 2.537143 TCCAAGACCTTCACTACCTCC 58.463 52.381 0.00 0.00 0.00 4.30
1340 2593 2.905085 CCTGATAGATGTGAGGCTGGAT 59.095 50.000 0.00 0.00 0.00 3.41
1343 2596 2.166821 GCCTGATAGATGTGAGGCTG 57.833 55.000 0.00 0.00 46.40 4.85
1395 2648 6.707608 CCTGTACTGCTCATAATCTAATTGCA 59.292 38.462 0.00 0.00 0.00 4.08
1635 2917 8.454106 AGAACATGCTGTTAATTTCTATCACAC 58.546 33.333 0.00 0.00 41.28 3.82
1681 2963 8.559536 TGAACATTCTAGTGAACAAATTCAGTC 58.440 33.333 0.73 0.00 43.76 3.51
1843 3174 7.835181 TGGTCTGGGAGAACTTAAAACTAAAAA 59.165 33.333 0.00 0.00 31.84 1.94
1889 3220 3.554934 ACTTCTCATGTCAAACAGCCAA 58.445 40.909 0.00 0.00 0.00 4.52
1890 3221 3.213206 ACTTCTCATGTCAAACAGCCA 57.787 42.857 0.00 0.00 0.00 4.75
1891 3222 4.202050 ACAAACTTCTCATGTCAAACAGCC 60.202 41.667 0.00 0.00 0.00 4.85
1985 3353 4.899239 CTCCGCCACCGCCATCTC 62.899 72.222 0.00 0.00 0.00 2.75
2048 3416 2.669391 GCTTCCTGTCTGCAAATTTCCG 60.669 50.000 0.00 0.00 0.00 4.30
2053 3421 0.890542 TGCGCTTCCTGTCTGCAAAT 60.891 50.000 9.73 0.00 31.69 2.32
2056 3424 2.666190 GTGCGCTTCCTGTCTGCA 60.666 61.111 9.73 0.00 0.00 4.41
2057 3425 3.782244 CGTGCGCTTCCTGTCTGC 61.782 66.667 9.73 0.00 0.00 4.26
2058 3426 3.114616 CCGTGCGCTTCCTGTCTG 61.115 66.667 9.73 0.00 0.00 3.51
2059 3427 4.379243 CCCGTGCGCTTCCTGTCT 62.379 66.667 9.73 0.00 0.00 3.41
2073 3441 3.976701 AATGGCTCCAGTTCGCCCG 62.977 63.158 0.00 0.00 45.71 6.13
2074 3442 2.044946 AATGGCTCCAGTTCGCCC 60.045 61.111 0.00 0.00 45.71 6.13
2075 3443 2.409870 CCAATGGCTCCAGTTCGCC 61.410 63.158 0.00 0.00 46.46 5.54
2076 3444 2.409870 CCCAATGGCTCCAGTTCGC 61.410 63.158 0.00 0.00 0.00 4.70
2077 3445 1.002134 ACCCAATGGCTCCAGTTCG 60.002 57.895 0.00 0.00 33.59 3.95
2078 3446 0.681243 GGACCCAATGGCTCCAGTTC 60.681 60.000 8.72 0.00 34.07 3.01
2079 3447 1.384191 GGACCCAATGGCTCCAGTT 59.616 57.895 8.72 0.00 34.07 3.16
2080 3448 1.852157 TGGACCCAATGGCTCCAGT 60.852 57.895 12.15 0.00 37.10 4.00
2081 3449 1.077212 CTGGACCCAATGGCTCCAG 60.077 63.158 24.64 24.64 45.31 3.86
2082 3450 1.852157 ACTGGACCCAATGGCTCCA 60.852 57.895 15.10 15.10 38.63 3.86
2083 3451 1.077429 GACTGGACCCAATGGCTCC 60.077 63.158 6.68 6.68 34.33 4.70
2084 3452 1.450312 CGACTGGACCCAATGGCTC 60.450 63.158 0.00 0.00 33.59 4.70
2085 3453 2.671070 CGACTGGACCCAATGGCT 59.329 61.111 0.00 0.00 33.59 4.75
2086 3454 3.134127 GCGACTGGACCCAATGGC 61.134 66.667 0.00 0.00 33.59 4.40
2087 3455 2.438434 GGCGACTGGACCCAATGG 60.438 66.667 0.00 0.00 37.80 3.16
2088 3456 2.819595 CGGCGACTGGACCCAATG 60.820 66.667 0.00 0.00 0.00 2.82
2089 3457 4.096003 CCGGCGACTGGACCCAAT 62.096 66.667 9.30 0.00 0.00 3.16
2114 3482 3.403558 GTCCCCTCACTCCCCAGC 61.404 72.222 0.00 0.00 0.00 4.85
2115 3483 3.077556 CGTCCCCTCACTCCCCAG 61.078 72.222 0.00 0.00 0.00 4.45
2116 3484 4.715130 CCGTCCCCTCACTCCCCA 62.715 72.222 0.00 0.00 0.00 4.96
2121 3489 4.371417 TACGCCCGTCCCCTCACT 62.371 66.667 0.00 0.00 0.00 3.41
2122 3490 4.139234 GTACGCCCGTCCCCTCAC 62.139 72.222 0.00 0.00 0.00 3.51
2135 3503 4.814294 GTCAGCAGGGCCCGTACG 62.814 72.222 18.44 8.69 0.00 3.67
2136 3504 2.465055 AAAGTCAGCAGGGCCCGTAC 62.465 60.000 18.44 10.17 0.00 3.67
2137 3505 2.180159 GAAAGTCAGCAGGGCCCGTA 62.180 60.000 18.44 0.00 0.00 4.02
2138 3506 3.553095 GAAAGTCAGCAGGGCCCGT 62.553 63.158 18.44 1.41 0.00 5.28
2139 3507 2.747855 GAAAGTCAGCAGGGCCCG 60.748 66.667 18.44 13.02 0.00 6.13
2140 3508 1.377856 GAGAAAGTCAGCAGGGCCC 60.378 63.158 16.46 16.46 0.00 5.80
2141 3509 1.377856 GGAGAAAGTCAGCAGGGCC 60.378 63.158 0.00 0.00 0.00 5.80
2142 3510 1.377856 GGGAGAAAGTCAGCAGGGC 60.378 63.158 0.00 0.00 0.00 5.19
2143 3511 1.301293 GGGGAGAAAGTCAGCAGGG 59.699 63.158 0.00 0.00 0.00 4.45
2144 3512 1.204113 AGGGGGAGAAAGTCAGCAGG 61.204 60.000 0.00 0.00 0.00 4.85
2145 3513 0.035630 CAGGGGGAGAAAGTCAGCAG 60.036 60.000 0.00 0.00 0.00 4.24
2146 3514 1.492133 CCAGGGGGAGAAAGTCAGCA 61.492 60.000 0.00 0.00 35.59 4.41
2147 3515 1.301293 CCAGGGGGAGAAAGTCAGC 59.699 63.158 0.00 0.00 35.59 4.26
2148 3516 0.615850 GACCAGGGGGAGAAAGTCAG 59.384 60.000 0.00 0.00 38.05 3.51
2149 3517 1.192146 CGACCAGGGGGAGAAAGTCA 61.192 60.000 0.00 0.00 38.05 3.41
2150 3518 0.903454 TCGACCAGGGGGAGAAAGTC 60.903 60.000 0.00 0.00 38.05 3.01
2151 3519 0.252742 ATCGACCAGGGGGAGAAAGT 60.253 55.000 0.00 0.00 38.05 2.66
2152 3520 0.466124 GATCGACCAGGGGGAGAAAG 59.534 60.000 0.00 0.00 38.05 2.62
2153 3521 0.042731 AGATCGACCAGGGGGAGAAA 59.957 55.000 0.00 0.00 38.05 2.52
2154 3522 0.687757 CAGATCGACCAGGGGGAGAA 60.688 60.000 0.00 0.00 38.05 2.87
2155 3523 1.075970 CAGATCGACCAGGGGGAGA 60.076 63.158 0.00 0.00 38.05 3.71
2156 3524 2.136878 CCAGATCGACCAGGGGGAG 61.137 68.421 0.00 0.00 38.05 4.30
2157 3525 2.041922 CCAGATCGACCAGGGGGA 60.042 66.667 0.00 0.00 38.05 4.81
2158 3526 3.164269 CCCAGATCGACCAGGGGG 61.164 72.222 0.00 0.00 37.66 5.40
2159 3527 3.866582 GCCCAGATCGACCAGGGG 61.867 72.222 9.73 5.73 41.75 4.79
2160 3528 3.866582 GGCCCAGATCGACCAGGG 61.867 72.222 1.93 1.93 44.37 4.45
2161 3529 3.083349 TGGCCCAGATCGACCAGG 61.083 66.667 0.00 0.00 0.00 4.45
2162 3530 2.187946 GTGGCCCAGATCGACCAG 59.812 66.667 0.00 0.00 31.46 4.00
2163 3531 3.770040 CGTGGCCCAGATCGACCA 61.770 66.667 0.00 0.00 0.00 4.02
2164 3532 2.907897 CTTCGTGGCCCAGATCGACC 62.908 65.000 0.00 0.00 32.14 4.79
2165 3533 1.519455 CTTCGTGGCCCAGATCGAC 60.519 63.158 0.00 0.00 32.14 4.20
2166 3534 2.892640 CTTCGTGGCCCAGATCGA 59.107 61.111 0.00 0.00 0.00 3.59
2167 3535 2.859273 AAGCTTCGTGGCCCAGATCG 62.859 60.000 0.00 0.00 0.00 3.69
2168 3536 0.678048 AAAGCTTCGTGGCCCAGATC 60.678 55.000 0.00 0.00 0.00 2.75
2169 3537 0.678048 GAAAGCTTCGTGGCCCAGAT 60.678 55.000 0.00 0.00 0.00 2.90
2170 3538 1.302511 GAAAGCTTCGTGGCCCAGA 60.303 57.895 0.00 0.00 0.00 3.86
2171 3539 3.267974 GAAAGCTTCGTGGCCCAG 58.732 61.111 0.00 0.00 0.00 4.45
2180 3548 3.181513 GGGTCCGTTAATTCGAAAGCTTC 60.182 47.826 0.00 0.00 0.00 3.86
2181 3549 2.745821 GGGTCCGTTAATTCGAAAGCTT 59.254 45.455 0.00 0.00 0.00 3.74
2182 3550 2.289819 TGGGTCCGTTAATTCGAAAGCT 60.290 45.455 0.00 0.00 0.00 3.74
2183 3551 2.078392 TGGGTCCGTTAATTCGAAAGC 58.922 47.619 0.00 0.00 0.00 3.51
2184 3552 4.189231 AGATGGGTCCGTTAATTCGAAAG 58.811 43.478 0.00 0.00 0.00 2.62
2185 3553 4.210724 AGATGGGTCCGTTAATTCGAAA 57.789 40.909 0.00 0.00 0.00 3.46
2186 3554 3.899052 AGATGGGTCCGTTAATTCGAA 57.101 42.857 0.00 0.00 0.00 3.71
2187 3555 3.431207 GGAAGATGGGTCCGTTAATTCGA 60.431 47.826 0.00 0.00 0.00 3.71
2188 3556 2.870411 GGAAGATGGGTCCGTTAATTCG 59.130 50.000 0.00 0.00 0.00 3.34
2189 3557 4.152284 AGGAAGATGGGTCCGTTAATTC 57.848 45.455 0.00 0.00 40.36 2.17
2190 3558 5.132144 ACATAGGAAGATGGGTCCGTTAATT 59.868 40.000 0.00 0.00 40.36 1.40
2191 3559 4.658901 ACATAGGAAGATGGGTCCGTTAAT 59.341 41.667 0.00 0.00 40.36 1.40
2192 3560 4.035112 ACATAGGAAGATGGGTCCGTTAA 58.965 43.478 0.00 0.00 40.36 2.01
2193 3561 3.386726 CACATAGGAAGATGGGTCCGTTA 59.613 47.826 0.00 0.00 40.36 3.18
2194 3562 2.170607 CACATAGGAAGATGGGTCCGTT 59.829 50.000 0.00 0.00 40.36 4.44
2195 3563 1.762957 CACATAGGAAGATGGGTCCGT 59.237 52.381 0.00 0.00 40.36 4.69
2196 3564 1.070758 CCACATAGGAAGATGGGTCCG 59.929 57.143 0.00 0.00 40.36 4.79
2197 3565 1.421646 CCCACATAGGAAGATGGGTCC 59.578 57.143 0.00 0.00 45.89 4.46
2198 3566 2.938956 CCCACATAGGAAGATGGGTC 57.061 55.000 0.00 0.00 45.89 4.46
2201 3569 0.111253 GGGCCCACATAGGAAGATGG 59.889 60.000 19.95 0.00 41.22 3.51
2202 3570 0.250467 CGGGCCCACATAGGAAGATG 60.250 60.000 24.92 0.00 41.22 2.90
2203 3571 2.056906 GCGGGCCCACATAGGAAGAT 62.057 60.000 24.92 0.00 41.22 2.40
2204 3572 2.742116 GCGGGCCCACATAGGAAGA 61.742 63.158 24.92 0.00 41.22 2.87
2205 3573 2.203209 GCGGGCCCACATAGGAAG 60.203 66.667 24.92 2.32 41.22 3.46
2206 3574 4.169696 CGCGGGCCCACATAGGAA 62.170 66.667 24.92 0.00 41.22 3.36
2208 3576 4.609018 CTCGCGGGCCCACATAGG 62.609 72.222 24.92 4.93 37.03 2.57
2209 3577 3.506059 CTCTCGCGGGCCCACATAG 62.506 68.421 24.92 12.73 0.00 2.23
2210 3578 3.536917 CTCTCGCGGGCCCACATA 61.537 66.667 24.92 1.54 0.00 2.29
2215 3583 4.593864 CTAAGCTCTCGCGGGCCC 62.594 72.222 13.57 13.57 42.32 5.80
2222 3590 4.933064 CCGGCCGCTAAGCTCTCG 62.933 72.222 22.85 0.00 0.00 4.04
2232 3600 2.186826 ATTGTTATGAGCCGGCCGC 61.187 57.895 26.15 17.04 37.98 6.53
2233 3601 1.648720 CATTGTTATGAGCCGGCCG 59.351 57.895 26.15 21.04 33.37 6.13
2234 3602 1.360192 GCATTGTTATGAGCCGGCC 59.640 57.895 26.15 15.80 33.37 6.13
2235 3603 1.009675 CGCATTGTTATGAGCCGGC 60.010 57.895 21.89 21.89 33.37 6.13
2236 3604 0.027979 CACGCATTGTTATGAGCCGG 59.972 55.000 0.00 0.00 35.25 6.13
2237 3605 1.004610 CTCACGCATTGTTATGAGCCG 60.005 52.381 0.00 0.00 35.25 5.52
2238 3606 2.744787 CTCACGCATTGTTATGAGCC 57.255 50.000 0.00 0.00 35.25 4.70
2240 3608 4.346734 AAAGCTCACGCATTGTTATGAG 57.653 40.909 0.00 8.66 41.29 2.90
2241 3609 4.215185 TCAAAAGCTCACGCATTGTTATGA 59.785 37.500 0.00 0.00 39.10 2.15
2242 3610 4.475028 TCAAAAGCTCACGCATTGTTATG 58.525 39.130 0.00 0.00 39.10 1.90
2243 3611 4.455533 TCTCAAAAGCTCACGCATTGTTAT 59.544 37.500 0.00 0.00 39.10 1.89
2244 3612 3.812609 TCTCAAAAGCTCACGCATTGTTA 59.187 39.130 0.00 0.00 39.10 2.41
2245 3613 2.618241 TCTCAAAAGCTCACGCATTGTT 59.382 40.909 0.00 0.00 39.10 2.83
2246 3614 2.221169 TCTCAAAAGCTCACGCATTGT 58.779 42.857 0.00 0.00 39.10 2.71
2247 3615 2.413765 CCTCTCAAAAGCTCACGCATTG 60.414 50.000 0.00 0.00 39.10 2.82
2248 3616 1.808945 CCTCTCAAAAGCTCACGCATT 59.191 47.619 0.00 0.00 39.10 3.56
2249 3617 1.446907 CCTCTCAAAAGCTCACGCAT 58.553 50.000 0.00 0.00 39.10 4.73
2250 3618 0.603707 CCCTCTCAAAAGCTCACGCA 60.604 55.000 0.00 0.00 39.10 5.24
2251 3619 1.916697 GCCCTCTCAAAAGCTCACGC 61.917 60.000 0.00 0.00 0.00 5.34
2252 3620 1.630244 CGCCCTCTCAAAAGCTCACG 61.630 60.000 0.00 0.00 0.00 4.35
2253 3621 0.603975 ACGCCCTCTCAAAAGCTCAC 60.604 55.000 0.00 0.00 0.00 3.51
2254 3622 0.108585 AACGCCCTCTCAAAAGCTCA 59.891 50.000 0.00 0.00 0.00 4.26
2255 3623 1.239347 AAACGCCCTCTCAAAAGCTC 58.761 50.000 0.00 0.00 0.00 4.09
2256 3624 1.692411 AAAACGCCCTCTCAAAAGCT 58.308 45.000 0.00 0.00 0.00 3.74
2257 3625 2.509052 AAAAACGCCCTCTCAAAAGC 57.491 45.000 0.00 0.00 0.00 3.51
2275 3643 6.316890 AGCTTCGTAAACTGGTCAACTAAAAA 59.683 34.615 0.00 0.00 0.00 1.94
2276 3644 5.818857 AGCTTCGTAAACTGGTCAACTAAAA 59.181 36.000 0.00 0.00 0.00 1.52
2277 3645 5.235616 CAGCTTCGTAAACTGGTCAACTAAA 59.764 40.000 0.00 0.00 0.00 1.85
2278 3646 4.748102 CAGCTTCGTAAACTGGTCAACTAA 59.252 41.667 0.00 0.00 0.00 2.24
2279 3647 4.038282 TCAGCTTCGTAAACTGGTCAACTA 59.962 41.667 0.00 0.00 32.19 2.24
2280 3648 3.131396 CAGCTTCGTAAACTGGTCAACT 58.869 45.455 0.00 0.00 0.00 3.16
2281 3649 3.059800 GTCAGCTTCGTAAACTGGTCAAC 60.060 47.826 0.00 0.00 32.19 3.18
2282 3650 3.128349 GTCAGCTTCGTAAACTGGTCAA 58.872 45.455 0.00 0.00 32.19 3.18
2283 3651 2.101750 TGTCAGCTTCGTAAACTGGTCA 59.898 45.455 0.00 0.00 32.19 4.02
2284 3652 2.731976 CTGTCAGCTTCGTAAACTGGTC 59.268 50.000 0.00 0.00 32.19 4.02
2285 3653 2.102588 ACTGTCAGCTTCGTAAACTGGT 59.897 45.455 0.00 0.00 32.19 4.00
2286 3654 2.755650 ACTGTCAGCTTCGTAAACTGG 58.244 47.619 0.00 0.00 32.19 4.00
2287 3655 4.051922 AGAACTGTCAGCTTCGTAAACTG 58.948 43.478 0.00 0.00 0.00 3.16
2288 3656 4.323553 AGAACTGTCAGCTTCGTAAACT 57.676 40.909 0.00 0.00 0.00 2.66
2289 3657 6.707599 AATAGAACTGTCAGCTTCGTAAAC 57.292 37.500 0.00 0.00 0.00 2.01
2290 3658 6.367969 GGAAATAGAACTGTCAGCTTCGTAAA 59.632 38.462 0.00 0.00 0.00 2.01
2291 3659 5.867716 GGAAATAGAACTGTCAGCTTCGTAA 59.132 40.000 0.00 0.00 0.00 3.18
2292 3660 5.185249 AGGAAATAGAACTGTCAGCTTCGTA 59.815 40.000 0.00 0.17 0.00 3.43
2293 3661 4.021016 AGGAAATAGAACTGTCAGCTTCGT 60.021 41.667 0.00 0.00 0.00 3.85
2294 3662 4.328440 CAGGAAATAGAACTGTCAGCTTCG 59.672 45.833 0.00 0.00 0.00 3.79
2295 3663 5.121454 CACAGGAAATAGAACTGTCAGCTTC 59.879 44.000 0.00 3.68 43.09 3.86
2296 3664 4.999950 CACAGGAAATAGAACTGTCAGCTT 59.000 41.667 0.00 0.00 43.09 3.74
2297 3665 4.040952 ACACAGGAAATAGAACTGTCAGCT 59.959 41.667 0.00 0.00 43.09 4.24
2298 3666 4.153117 CACACAGGAAATAGAACTGTCAGC 59.847 45.833 0.00 0.00 43.09 4.26
2299 3667 5.300752 ACACACAGGAAATAGAACTGTCAG 58.699 41.667 0.00 0.00 43.09 3.51
2300 3668 5.290493 ACACACAGGAAATAGAACTGTCA 57.710 39.130 0.00 0.00 43.09 3.58
2301 3669 6.483640 AGAAACACACAGGAAATAGAACTGTC 59.516 38.462 0.00 0.00 43.09 3.51
2302 3670 6.357367 AGAAACACACAGGAAATAGAACTGT 58.643 36.000 0.00 0.00 45.62 3.55
2303 3671 6.867662 AGAAACACACAGGAAATAGAACTG 57.132 37.500 0.00 0.00 38.19 3.16
2306 3674 9.529325 CGATATAGAAACACACAGGAAATAGAA 57.471 33.333 0.00 0.00 0.00 2.10
2307 3675 8.909923 TCGATATAGAAACACACAGGAAATAGA 58.090 33.333 0.00 0.00 0.00 1.98
2308 3676 9.698309 ATCGATATAGAAACACACAGGAAATAG 57.302 33.333 0.00 0.00 0.00 1.73
2310 3678 8.964476 AATCGATATAGAAACACACAGGAAAT 57.036 30.769 0.00 0.00 0.00 2.17
2311 3679 8.786826 AAATCGATATAGAAACACACAGGAAA 57.213 30.769 0.00 0.00 0.00 3.13
2312 3680 8.786826 AAAATCGATATAGAAACACACAGGAA 57.213 30.769 0.00 0.00 0.00 3.36
2313 3681 8.786826 AAAAATCGATATAGAAACACACAGGA 57.213 30.769 0.00 0.00 0.00 3.86
2342 3710 8.962679 AGTCAGCGTATATTGGGAAAATAAAAA 58.037 29.630 0.00 0.00 0.00 1.94
2343 3711 8.514330 AGTCAGCGTATATTGGGAAAATAAAA 57.486 30.769 0.00 0.00 0.00 1.52
2344 3712 8.402472 CAAGTCAGCGTATATTGGGAAAATAAA 58.598 33.333 0.00 0.00 0.00 1.40
2345 3713 7.554835 ACAAGTCAGCGTATATTGGGAAAATAA 59.445 33.333 0.00 0.00 0.00 1.40
2346 3714 7.051623 ACAAGTCAGCGTATATTGGGAAAATA 58.948 34.615 0.00 0.00 0.00 1.40
2347 3715 5.885912 ACAAGTCAGCGTATATTGGGAAAAT 59.114 36.000 0.00 0.00 0.00 1.82
2348 3716 5.250200 ACAAGTCAGCGTATATTGGGAAAA 58.750 37.500 0.00 0.00 0.00 2.29
2349 3717 4.839121 ACAAGTCAGCGTATATTGGGAAA 58.161 39.130 0.00 0.00 0.00 3.13
2350 3718 4.481368 ACAAGTCAGCGTATATTGGGAA 57.519 40.909 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.