Multiple sequence alignment - TraesCS3A01G015800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G015800 chr3A 100.000 3460 0 0 1 3460 10442590 10439131 0.000000e+00 6390.0
1 TraesCS3A01G015800 chr3A 98.951 2098 19 3 1125 3222 10474668 10472574 0.000000e+00 3749.0
2 TraesCS3A01G015800 chr3A 90.135 223 19 2 1 221 7714644 7714423 1.570000e-73 287.0
3 TraesCS3A01G015800 chr3A 86.400 250 22 8 1036 1285 10474584 10474347 2.650000e-66 263.0
4 TraesCS3A01G015800 chr3A 86.000 250 23 8 1036 1285 10441381 10441144 1.230000e-64 257.0
5 TraesCS3A01G015800 chr3A 86.000 250 23 8 1210 1447 10441555 10441306 1.230000e-64 257.0
6 TraesCS3A01G015800 chr3A 81.988 161 16 7 1299 1447 10474668 10474509 1.300000e-24 124.0
7 TraesCS3A01G015800 chr3D 93.324 2202 87 21 1036 3223 4819396 4817241 0.000000e+00 3197.0
8 TraesCS3A01G015800 chr3D 86.294 715 56 23 218 916 4820325 4819637 0.000000e+00 739.0
9 TraesCS3A01G015800 chr3D 94.614 427 21 2 2797 3223 4674525 4674101 0.000000e+00 660.0
10 TraesCS3A01G015800 chr3D 91.864 381 28 3 2953 3331 4817172 4816793 2.360000e-146 529.0
11 TraesCS3A01G015800 chr3D 85.714 476 38 14 449 916 4677281 4676828 3.120000e-130 475.0
12 TraesCS3A01G015800 chr3D 89.458 332 22 6 1125 1447 4819477 4819150 1.160000e-109 407.0
13 TraesCS3A01G015800 chr3D 89.200 250 24 1 1036 1285 4819225 4818979 3.350000e-80 309.0
14 TraesCS3A01G015800 chr3D 92.188 128 7 1 3333 3460 42999254 42999378 9.870000e-41 178.0
15 TraesCS3A01G015800 chr3D 93.333 90 5 1 2927 3015 9761604 9761693 7.790000e-27 132.0
16 TraesCS3A01G015800 chr3D 88.889 63 5 1 931 993 4676844 4676784 3.700000e-10 76.8
17 TraesCS3A01G015800 chrUn 91.304 1518 89 11 1036 2514 236970232 236971745 0.000000e+00 2032.0
18 TraesCS3A01G015800 chrUn 93.264 772 27 14 1902 2651 35392178 35391410 0.000000e+00 1114.0
19 TraesCS3A01G015800 chrUn 85.354 1031 105 28 2330 3333 35391339 35390328 0.000000e+00 1026.0
20 TraesCS3A01G015800 chrUn 84.688 960 85 30 2330 3262 35985889 35984965 0.000000e+00 902.0
21 TraesCS3A01G015800 chrUn 89.683 630 51 10 2566 3191 35389033 35388414 0.000000e+00 791.0
22 TraesCS3A01G015800 chrUn 92.126 381 27 3 2953 3331 35588807 35589186 5.080000e-148 534.0
23 TraesCS3A01G015800 chrUn 88.554 332 25 4 1125 1447 236970151 236970478 1.160000e-104 390.0
24 TraesCS3A01G015800 chrUn 92.377 223 15 1 1 221 257176353 257176575 2.000000e-82 316.0
25 TraesCS3A01G015800 chrUn 87.200 250 29 1 1036 1285 236970403 236970649 7.310000e-72 281.0
26 TraesCS3A01G015800 chrUn 95.946 148 6 0 2455 2602 236971993 236972140 1.240000e-59 241.0
27 TraesCS3A01G015800 chrUn 91.549 71 6 0 2578 2648 236971758 236971828 7.900000e-17 99.0
28 TraesCS3A01G015800 chr5D 92.377 223 15 1 1 221 559656806 559657028 2.000000e-82 316.0
29 TraesCS3A01G015800 chr7A 91.928 223 16 2 1 221 286155864 286156086 9.320000e-81 311.0
30 TraesCS3A01G015800 chr7A 95.385 130 5 1 3331 3460 708348799 708348927 4.530000e-49 206.0
31 TraesCS3A01G015800 chr7A 73.188 276 54 11 497 753 38130454 38130728 7.960000e-12 82.4
32 TraesCS3A01G015800 chr7A 79.612 103 17 2 230 330 6622197 6622097 1.720000e-08 71.3
33 TraesCS3A01G015800 chr1D 93.701 127 6 1 3334 3460 368332376 368332252 4.560000e-44 189.0
34 TraesCS3A01G015800 chr4A 76.338 355 65 12 494 831 73523316 73522964 4.590000e-39 172.0
35 TraesCS3A01G015800 chr2D 80.583 103 16 3 266 368 27655564 27655466 3.700000e-10 76.8
36 TraesCS3A01G015800 chr7B 77.228 101 23 0 230 330 550653357 550653457 3.730000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G015800 chr3A 10439131 10442590 3459 True 2301.333333 6390 90.666667 1 3460 3 chr3A.!!$R2 3459
1 TraesCS3A01G015800 chr3A 10472574 10474668 2094 True 1378.666667 3749 89.113000 1036 3222 3 chr3A.!!$R3 2186
2 TraesCS3A01G015800 chr3D 4816793 4820325 3532 True 1036.200000 3197 90.028000 218 3331 5 chr3D.!!$R2 3113
3 TraesCS3A01G015800 chr3D 4674101 4677281 3180 True 403.933333 660 89.739000 449 3223 3 chr3D.!!$R1 2774
4 TraesCS3A01G015800 chrUn 35388414 35392178 3764 True 977.000000 1114 89.433667 1902 3333 3 chrUn.!!$R2 1431
5 TraesCS3A01G015800 chrUn 35984965 35985889 924 True 902.000000 902 84.688000 2330 3262 1 chrUn.!!$R1 932
6 TraesCS3A01G015800 chrUn 236970151 236972140 1989 False 608.600000 2032 90.910600 1036 2648 5 chrUn.!!$F3 1612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.034670 GCTTCATTCTCTGCTGGGGT 60.035 55.0 0.00 0.0 0.00 4.95 F
690 698 0.035739 GCCGGACAACCTCCACTTAA 59.964 55.0 5.05 0.0 39.39 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1011 1027 0.034186 ATTGGAATGCGCTTGGAGGA 60.034 50.000 9.73 0.0 0.0 3.71 R
3168 7401 6.884836 ACTAAAAAGGAGCGGAGTGATTATTT 59.115 34.615 0.00 0.0 0.0 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.867857 CTTCTTCCTAAGAGAAGGGTGC 58.132 50.000 6.07 0.00 44.00 5.01
46 47 3.191888 TCTTCCTAAGAGAAGGGTGCT 57.808 47.619 1.74 0.00 42.94 4.40
47 48 3.521727 TCTTCCTAAGAGAAGGGTGCTT 58.478 45.455 1.74 0.00 42.94 3.91
48 49 3.515901 TCTTCCTAAGAGAAGGGTGCTTC 59.484 47.826 1.74 0.00 42.94 3.86
49 50 2.902608 TCCTAAGAGAAGGGTGCTTCA 58.097 47.619 0.00 0.00 37.24 3.02
50 51 3.248024 TCCTAAGAGAAGGGTGCTTCAA 58.752 45.455 0.00 0.00 37.24 2.69
51 52 3.261897 TCCTAAGAGAAGGGTGCTTCAAG 59.738 47.826 0.00 0.00 37.24 3.02
52 53 3.261897 CCTAAGAGAAGGGTGCTTCAAGA 59.738 47.826 0.00 0.00 35.91 3.02
53 54 3.415457 AAGAGAAGGGTGCTTCAAGAG 57.585 47.619 0.00 0.00 35.91 2.85
66 67 4.603231 CTTCAAGAGCTTCATTCTCTGC 57.397 45.455 0.00 0.00 40.51 4.26
67 68 3.977134 TCAAGAGCTTCATTCTCTGCT 57.023 42.857 0.00 0.00 40.51 4.24
68 69 3.597255 TCAAGAGCTTCATTCTCTGCTG 58.403 45.455 0.00 0.00 40.51 4.41
69 70 2.678836 CAAGAGCTTCATTCTCTGCTGG 59.321 50.000 0.00 0.00 40.51 4.85
70 71 1.209990 AGAGCTTCATTCTCTGCTGGG 59.790 52.381 0.00 0.00 39.29 4.45
71 72 0.255318 AGCTTCATTCTCTGCTGGGG 59.745 55.000 0.00 0.00 34.19 4.96
72 73 0.034670 GCTTCATTCTCTGCTGGGGT 60.035 55.000 0.00 0.00 0.00 4.95
73 74 1.747709 CTTCATTCTCTGCTGGGGTG 58.252 55.000 0.00 0.00 0.00 4.61
74 75 1.280133 CTTCATTCTCTGCTGGGGTGA 59.720 52.381 0.00 0.00 0.00 4.02
75 76 0.615331 TCATTCTCTGCTGGGGTGAC 59.385 55.000 0.00 0.00 0.00 3.67
76 77 0.617413 CATTCTCTGCTGGGGTGACT 59.383 55.000 0.00 0.00 0.00 3.41
77 78 1.004044 CATTCTCTGCTGGGGTGACTT 59.996 52.381 0.00 0.00 0.00 3.01
78 79 1.140312 TTCTCTGCTGGGGTGACTTT 58.860 50.000 0.00 0.00 0.00 2.66
79 80 1.140312 TCTCTGCTGGGGTGACTTTT 58.860 50.000 0.00 0.00 0.00 2.27
80 81 1.494721 TCTCTGCTGGGGTGACTTTTT 59.505 47.619 0.00 0.00 0.00 1.94
81 82 1.882623 CTCTGCTGGGGTGACTTTTTC 59.117 52.381 0.00 0.00 0.00 2.29
82 83 0.961753 CTGCTGGGGTGACTTTTTCC 59.038 55.000 0.00 0.00 0.00 3.13
83 84 0.555769 TGCTGGGGTGACTTTTTCCT 59.444 50.000 0.00 0.00 0.00 3.36
84 85 1.248486 GCTGGGGTGACTTTTTCCTC 58.752 55.000 0.00 0.00 0.00 3.71
85 86 1.478654 GCTGGGGTGACTTTTTCCTCA 60.479 52.381 0.00 0.00 0.00 3.86
86 87 2.508526 CTGGGGTGACTTTTTCCTCAG 58.491 52.381 0.00 0.00 42.33 3.35
87 88 1.248486 GGGGTGACTTTTTCCTCAGC 58.752 55.000 0.00 0.00 34.73 4.26
88 89 1.248486 GGGTGACTTTTTCCTCAGCC 58.752 55.000 0.42 0.42 45.29 4.85
89 90 0.875059 GGTGACTTTTTCCTCAGCCG 59.125 55.000 0.00 0.00 0.00 5.52
90 91 1.542547 GGTGACTTTTTCCTCAGCCGA 60.543 52.381 0.00 0.00 0.00 5.54
91 92 1.801178 GTGACTTTTTCCTCAGCCGAG 59.199 52.381 0.00 0.00 39.16 4.63
92 93 1.691976 TGACTTTTTCCTCAGCCGAGA 59.308 47.619 0.00 0.00 42.34 4.04
93 94 2.104111 TGACTTTTTCCTCAGCCGAGAA 59.896 45.455 0.00 0.00 42.34 2.87
94 95 2.739379 GACTTTTTCCTCAGCCGAGAAG 59.261 50.000 0.00 0.00 42.34 2.85
95 96 2.368875 ACTTTTTCCTCAGCCGAGAAGA 59.631 45.455 0.00 0.00 42.34 2.87
96 97 3.181454 ACTTTTTCCTCAGCCGAGAAGAA 60.181 43.478 0.00 0.00 42.34 2.52
97 98 2.751166 TTTCCTCAGCCGAGAAGAAG 57.249 50.000 0.00 0.00 42.34 2.85
98 99 1.633774 TTCCTCAGCCGAGAAGAAGT 58.366 50.000 0.00 0.00 42.34 3.01
99 100 1.178276 TCCTCAGCCGAGAAGAAGTC 58.822 55.000 0.00 0.00 42.34 3.01
100 101 0.891373 CCTCAGCCGAGAAGAAGTCA 59.109 55.000 0.00 0.00 42.34 3.41
101 102 1.135141 CCTCAGCCGAGAAGAAGTCAG 60.135 57.143 0.00 0.00 42.34 3.51
102 103 1.543802 CTCAGCCGAGAAGAAGTCAGT 59.456 52.381 0.00 0.00 42.34 3.41
103 104 1.542030 TCAGCCGAGAAGAAGTCAGTC 59.458 52.381 0.00 0.00 0.00 3.51
104 105 1.543802 CAGCCGAGAAGAAGTCAGTCT 59.456 52.381 0.00 0.00 0.00 3.24
105 106 2.029470 CAGCCGAGAAGAAGTCAGTCTT 60.029 50.000 0.00 0.00 40.62 3.01
106 107 2.029470 AGCCGAGAAGAAGTCAGTCTTG 60.029 50.000 0.00 0.00 37.98 3.02
107 108 2.029828 GCCGAGAAGAAGTCAGTCTTGA 60.030 50.000 0.00 0.00 37.98 3.02
108 109 3.367910 GCCGAGAAGAAGTCAGTCTTGAT 60.368 47.826 0.00 0.00 37.98 2.57
109 110 4.815269 CCGAGAAGAAGTCAGTCTTGATT 58.185 43.478 0.00 0.00 37.98 2.57
110 111 5.233988 CCGAGAAGAAGTCAGTCTTGATTT 58.766 41.667 0.00 0.00 37.98 2.17
111 112 5.698545 CCGAGAAGAAGTCAGTCTTGATTTT 59.301 40.000 0.00 0.00 37.98 1.82
112 113 6.347240 CCGAGAAGAAGTCAGTCTTGATTTTG 60.347 42.308 0.00 0.00 37.98 2.44
113 114 6.422100 CGAGAAGAAGTCAGTCTTGATTTTGA 59.578 38.462 0.00 0.00 37.98 2.69
114 115 7.042456 CGAGAAGAAGTCAGTCTTGATTTTGAA 60.042 37.037 0.00 0.00 37.98 2.69
115 116 7.924940 AGAAGAAGTCAGTCTTGATTTTGAAC 58.075 34.615 0.00 0.00 37.98 3.18
116 117 6.625873 AGAAGTCAGTCTTGATTTTGAACC 57.374 37.500 0.00 0.00 33.90 3.62
117 118 5.532779 AGAAGTCAGTCTTGATTTTGAACCC 59.467 40.000 0.00 0.00 33.90 4.11
118 119 4.792068 AGTCAGTCTTGATTTTGAACCCA 58.208 39.130 0.00 0.00 35.39 4.51
119 120 4.580580 AGTCAGTCTTGATTTTGAACCCAC 59.419 41.667 0.00 0.00 35.39 4.61
120 121 4.580580 GTCAGTCTTGATTTTGAACCCACT 59.419 41.667 0.00 0.00 35.39 4.00
121 122 5.763204 GTCAGTCTTGATTTTGAACCCACTA 59.237 40.000 0.00 0.00 35.39 2.74
122 123 5.763204 TCAGTCTTGATTTTGAACCCACTAC 59.237 40.000 0.00 0.00 0.00 2.73
123 124 5.765182 CAGTCTTGATTTTGAACCCACTACT 59.235 40.000 0.00 0.00 0.00 2.57
124 125 6.934645 CAGTCTTGATTTTGAACCCACTACTA 59.065 38.462 0.00 0.00 0.00 1.82
125 126 7.607991 CAGTCTTGATTTTGAACCCACTACTAT 59.392 37.037 0.00 0.00 0.00 2.12
126 127 7.824779 AGTCTTGATTTTGAACCCACTACTATC 59.175 37.037 0.00 0.00 0.00 2.08
127 128 7.065923 GTCTTGATTTTGAACCCACTACTATCC 59.934 40.741 0.00 0.00 0.00 2.59
128 129 6.636454 TGATTTTGAACCCACTACTATCCT 57.364 37.500 0.00 0.00 0.00 3.24
129 130 6.650120 TGATTTTGAACCCACTACTATCCTC 58.350 40.000 0.00 0.00 0.00 3.71
130 131 6.443849 TGATTTTGAACCCACTACTATCCTCT 59.556 38.462 0.00 0.00 0.00 3.69
131 132 6.697641 TTTTGAACCCACTACTATCCTCTT 57.302 37.500 0.00 0.00 0.00 2.85
132 133 6.697641 TTTGAACCCACTACTATCCTCTTT 57.302 37.500 0.00 0.00 0.00 2.52
133 134 6.697641 TTGAACCCACTACTATCCTCTTTT 57.302 37.500 0.00 0.00 0.00 2.27
134 135 6.697641 TGAACCCACTACTATCCTCTTTTT 57.302 37.500 0.00 0.00 0.00 1.94
170 171 9.928236 CTTTATAGAAATCACTAGCTTTTGAGC 57.072 33.333 0.00 0.00 0.00 4.26
171 172 9.448438 TTTATAGAAATCACTAGCTTTTGAGCA 57.552 29.630 0.00 0.00 37.25 4.26
172 173 9.618890 TTATAGAAATCACTAGCTTTTGAGCAT 57.381 29.630 0.00 0.00 37.25 3.79
173 174 6.192234 AGAAATCACTAGCTTTTGAGCATG 57.808 37.500 0.00 0.00 37.25 4.06
174 175 5.709164 AGAAATCACTAGCTTTTGAGCATGT 59.291 36.000 0.00 0.00 37.25 3.21
175 176 5.557891 AATCACTAGCTTTTGAGCATGTC 57.442 39.130 0.00 0.00 37.25 3.06
176 177 3.338249 TCACTAGCTTTTGAGCATGTCC 58.662 45.455 0.00 0.00 37.25 4.02
177 178 3.008375 TCACTAGCTTTTGAGCATGTCCT 59.992 43.478 0.00 0.00 37.25 3.85
178 179 3.755378 CACTAGCTTTTGAGCATGTCCTT 59.245 43.478 0.00 0.00 37.25 3.36
179 180 4.937620 CACTAGCTTTTGAGCATGTCCTTA 59.062 41.667 0.00 0.00 37.25 2.69
180 181 5.064452 CACTAGCTTTTGAGCATGTCCTTAG 59.936 44.000 0.00 0.00 37.25 2.18
181 182 4.026356 AGCTTTTGAGCATGTCCTTAGT 57.974 40.909 0.88 0.00 37.25 2.24
182 183 4.401925 AGCTTTTGAGCATGTCCTTAGTT 58.598 39.130 0.88 0.00 37.25 2.24
183 184 4.829492 AGCTTTTGAGCATGTCCTTAGTTT 59.171 37.500 0.88 0.00 37.25 2.66
184 185 4.919754 GCTTTTGAGCATGTCCTTAGTTTG 59.080 41.667 0.00 0.00 34.41 2.93
185 186 5.507985 GCTTTTGAGCATGTCCTTAGTTTGT 60.508 40.000 0.00 0.00 34.41 2.83
186 187 5.437289 TTTGAGCATGTCCTTAGTTTGTG 57.563 39.130 0.00 0.00 0.00 3.33
187 188 4.085357 TGAGCATGTCCTTAGTTTGTGT 57.915 40.909 0.00 0.00 0.00 3.72
188 189 3.814842 TGAGCATGTCCTTAGTTTGTGTG 59.185 43.478 0.00 0.00 0.00 3.82
189 190 4.065088 GAGCATGTCCTTAGTTTGTGTGA 58.935 43.478 0.00 0.00 0.00 3.58
190 191 3.815401 AGCATGTCCTTAGTTTGTGTGAC 59.185 43.478 0.00 0.00 0.00 3.67
191 192 3.563808 GCATGTCCTTAGTTTGTGTGACA 59.436 43.478 0.00 0.00 37.17 3.58
192 193 4.319766 GCATGTCCTTAGTTTGTGTGACAG 60.320 45.833 0.00 0.00 36.32 3.51
193 194 3.804036 TGTCCTTAGTTTGTGTGACAGG 58.196 45.455 0.00 0.00 0.00 4.00
194 195 3.452990 TGTCCTTAGTTTGTGTGACAGGA 59.547 43.478 0.00 0.00 0.00 3.86
195 196 3.808174 GTCCTTAGTTTGTGTGACAGGAC 59.192 47.826 0.00 0.00 36.88 3.85
196 197 3.139077 CCTTAGTTTGTGTGACAGGACC 58.861 50.000 0.00 0.00 0.00 4.46
197 198 3.433031 CCTTAGTTTGTGTGACAGGACCA 60.433 47.826 0.00 0.00 0.00 4.02
198 199 4.389374 CTTAGTTTGTGTGACAGGACCAT 58.611 43.478 0.00 0.00 0.00 3.55
199 200 3.297134 AGTTTGTGTGACAGGACCATT 57.703 42.857 0.00 0.00 0.00 3.16
200 201 4.431416 AGTTTGTGTGACAGGACCATTA 57.569 40.909 0.00 0.00 0.00 1.90
201 202 4.389374 AGTTTGTGTGACAGGACCATTAG 58.611 43.478 0.00 0.00 0.00 1.73
202 203 3.417069 TTGTGTGACAGGACCATTAGG 57.583 47.619 0.00 0.00 42.21 2.69
203 204 1.628340 TGTGTGACAGGACCATTAGGG 59.372 52.381 0.00 0.00 44.81 3.53
204 205 0.618458 TGTGACAGGACCATTAGGGC 59.382 55.000 0.00 0.00 44.93 5.19
210 211 4.800554 GACCATTAGGGCCATCCG 57.199 61.111 6.18 0.00 42.05 4.18
211 212 1.073199 GACCATTAGGGCCATCCGG 59.927 63.158 6.18 0.00 42.05 5.14
212 213 1.385347 ACCATTAGGGCCATCCGGA 60.385 57.895 6.61 6.61 42.05 5.14
213 214 1.376466 CCATTAGGGCCATCCGGAG 59.624 63.158 11.34 0.00 41.52 4.63
214 215 1.127567 CCATTAGGGCCATCCGGAGA 61.128 60.000 11.34 0.00 41.52 3.71
215 216 0.322975 CATTAGGGCCATCCGGAGAG 59.677 60.000 11.34 4.47 41.52 3.20
216 217 0.104934 ATTAGGGCCATCCGGAGAGT 60.105 55.000 11.34 0.00 41.52 3.24
222 223 0.465705 GCCATCCGGAGAGTGAATCA 59.534 55.000 11.34 0.00 0.00 2.57
225 226 3.397482 CCATCCGGAGAGTGAATCAATC 58.603 50.000 11.34 2.04 0.00 2.67
226 227 3.181462 CCATCCGGAGAGTGAATCAATCA 60.181 47.826 11.34 0.00 30.35 2.57
257 258 4.261489 CCAAATGGCAAGTAGATCAGATGC 60.261 45.833 0.00 0.00 36.31 3.91
261 262 1.865655 GCAAGTAGATCAGATGCGCGA 60.866 52.381 12.10 0.00 0.00 5.87
320 321 2.946762 GTGTCTGAACGCCTTGGC 59.053 61.111 0.75 0.75 0.00 4.52
333 334 3.932580 CTTGGCGGACGTGCAGCTA 62.933 63.158 19.13 13.04 37.85 3.32
334 335 3.932580 TTGGCGGACGTGCAGCTAG 62.933 63.158 19.13 0.00 37.85 3.42
341 342 1.749334 GACGTGCAGCTAGCCCCTAT 61.749 60.000 12.13 0.00 44.83 2.57
345 346 0.181114 TGCAGCTAGCCCCTATGTTG 59.819 55.000 12.13 1.13 44.83 3.33
367 368 1.359459 GAACCAACGACGAGGCCATC 61.359 60.000 5.01 0.00 0.00 3.51
395 396 0.036765 TTTCGCTGAAGGTATGGCGT 60.037 50.000 0.00 0.00 46.37 5.68
427 428 0.250467 GTGTCAAGCAGAGGGAGCAA 60.250 55.000 0.00 0.00 0.00 3.91
475 476 0.466555 CTCCCCCAAACACAACGGAA 60.467 55.000 0.00 0.00 0.00 4.30
476 477 0.186386 TCCCCCAAACACAACGGAAT 59.814 50.000 0.00 0.00 0.00 3.01
477 478 0.316841 CCCCCAAACACAACGGAATG 59.683 55.000 0.00 0.00 0.00 2.67
478 479 0.319469 CCCCAAACACAACGGAATGC 60.319 55.000 0.00 0.00 0.00 3.56
481 482 1.335872 CCAAACACAACGGAATGCTCC 60.336 52.381 0.00 0.00 38.52 4.70
483 484 1.981256 AACACAACGGAATGCTCCTT 58.019 45.000 0.00 0.00 39.93 3.36
484 485 1.238439 ACACAACGGAATGCTCCTTG 58.762 50.000 0.00 0.00 39.93 3.61
485 486 1.202758 ACACAACGGAATGCTCCTTGA 60.203 47.619 9.58 0.00 39.93 3.02
486 487 1.879380 CACAACGGAATGCTCCTTGAA 59.121 47.619 9.58 0.00 39.93 2.69
487 488 2.095567 CACAACGGAATGCTCCTTGAAG 60.096 50.000 9.58 0.00 39.93 3.02
488 489 1.470098 CAACGGAATGCTCCTTGAAGG 59.530 52.381 4.45 4.45 39.93 3.46
489 490 0.693049 ACGGAATGCTCCTTGAAGGT 59.307 50.000 11.60 0.00 39.93 3.50
490 491 1.906574 ACGGAATGCTCCTTGAAGGTA 59.093 47.619 11.60 0.00 39.93 3.08
491 492 2.505819 ACGGAATGCTCCTTGAAGGTAT 59.494 45.455 11.60 2.10 39.93 2.73
492 493 3.709653 ACGGAATGCTCCTTGAAGGTATA 59.290 43.478 11.60 0.00 39.93 1.47
509 510 5.871396 GGTATAGACCTCTCATCAACCAA 57.129 43.478 0.00 0.00 43.16 3.67
522 523 0.240945 CAACCAACATCGTGAAGGCC 59.759 55.000 0.00 0.00 0.00 5.19
523 524 0.893727 AACCAACATCGTGAAGGCCC 60.894 55.000 0.00 0.00 0.00 5.80
548 549 0.408700 ACCGACCAGGAAGAGTAGGT 59.591 55.000 0.00 0.00 45.00 3.08
562 563 1.567649 AGTAGGTCATGGGAGACGGTA 59.432 52.381 0.00 0.00 39.42 4.02
690 698 0.035739 GCCGGACAACCTCCACTTAA 59.964 55.000 5.05 0.00 39.39 1.85
761 776 8.921670 GGTATGTGGTTGTGTAAATGATTTTTC 58.078 33.333 0.00 0.00 0.00 2.29
779 794 1.182667 TCGAGGTGTGACCGATCAAT 58.817 50.000 0.00 0.00 44.90 2.57
780 795 1.135112 TCGAGGTGTGACCGATCAATG 60.135 52.381 0.00 0.00 44.90 2.82
781 796 1.404181 CGAGGTGTGACCGATCAATGT 60.404 52.381 0.00 0.00 44.90 2.71
782 797 2.699954 GAGGTGTGACCGATCAATGTT 58.300 47.619 0.00 0.00 44.90 2.71
783 798 2.673368 GAGGTGTGACCGATCAATGTTC 59.327 50.000 0.00 0.00 44.90 3.18
784 799 2.038426 AGGTGTGACCGATCAATGTTCA 59.962 45.455 0.00 0.00 44.90 3.18
785 800 2.159627 GGTGTGACCGATCAATGTTCAC 59.840 50.000 0.00 0.00 36.31 3.18
786 801 2.065512 TGTGACCGATCAATGTTCACG 58.934 47.619 0.00 0.00 36.31 4.35
791 806 1.003545 CCGATCAATGTTCACGGATGC 60.004 52.381 0.00 0.00 45.31 3.91
839 855 4.049546 CGGATTTGGTGTACCGAGAATA 57.950 45.455 0.00 0.00 46.94 1.75
844 860 6.867293 GGATTTGGTGTACCGAGAATATAGAC 59.133 42.308 0.00 0.00 39.43 2.59
872 888 9.099454 GTCTTAGAGTACATATGTTTTGGAAGG 57.901 37.037 14.77 0.00 0.00 3.46
882 898 2.639839 TGTTTTGGAAGGGAGGAGAGAG 59.360 50.000 0.00 0.00 0.00 3.20
883 899 2.907042 GTTTTGGAAGGGAGGAGAGAGA 59.093 50.000 0.00 0.00 0.00 3.10
884 900 2.541233 TTGGAAGGGAGGAGAGAGAG 57.459 55.000 0.00 0.00 0.00 3.20
885 901 1.687492 TGGAAGGGAGGAGAGAGAGA 58.313 55.000 0.00 0.00 0.00 3.10
896 912 2.299297 GGAGAGAGAGAAAACCCAACGA 59.701 50.000 0.00 0.00 0.00 3.85
906 922 4.460382 AGAAAACCCAACGACTAGTATCGA 59.540 41.667 10.62 0.00 45.13 3.59
907 923 4.789012 AAACCCAACGACTAGTATCGAA 57.211 40.909 10.62 0.00 45.13 3.71
908 924 4.367386 AACCCAACGACTAGTATCGAAG 57.633 45.455 10.62 3.08 45.13 3.79
909 925 3.350833 ACCCAACGACTAGTATCGAAGT 58.649 45.455 10.62 0.00 45.13 3.01
910 926 3.760684 ACCCAACGACTAGTATCGAAGTT 59.239 43.478 10.62 1.75 45.13 2.66
911 927 4.219288 ACCCAACGACTAGTATCGAAGTTT 59.781 41.667 10.62 0.00 45.13 2.66
912 928 4.797349 CCCAACGACTAGTATCGAAGTTTC 59.203 45.833 10.62 0.00 45.13 2.78
913 929 5.396484 CCAACGACTAGTATCGAAGTTTCA 58.604 41.667 10.62 0.00 45.13 2.69
914 930 5.512082 CCAACGACTAGTATCGAAGTTTCAG 59.488 44.000 10.62 0.00 45.13 3.02
915 931 5.876612 ACGACTAGTATCGAAGTTTCAGT 57.123 39.130 10.62 0.00 45.13 3.41
916 932 5.867166 ACGACTAGTATCGAAGTTTCAGTC 58.133 41.667 10.62 0.00 45.13 3.51
917 933 5.163774 ACGACTAGTATCGAAGTTTCAGTCC 60.164 44.000 10.62 0.00 45.13 3.85
918 934 5.579564 ACTAGTATCGAAGTTTCAGTCCC 57.420 43.478 0.00 0.00 0.00 4.46
919 935 3.505464 AGTATCGAAGTTTCAGTCCCG 57.495 47.619 0.00 0.00 0.00 5.14
920 936 2.824341 AGTATCGAAGTTTCAGTCCCGT 59.176 45.455 0.00 0.00 0.00 5.28
921 937 2.365408 ATCGAAGTTTCAGTCCCGTC 57.635 50.000 0.00 0.00 0.00 4.79
922 938 1.034356 TCGAAGTTTCAGTCCCGTCA 58.966 50.000 0.00 0.00 0.00 4.35
923 939 1.409790 TCGAAGTTTCAGTCCCGTCAA 59.590 47.619 0.00 0.00 0.00 3.18
924 940 2.159071 TCGAAGTTTCAGTCCCGTCAAA 60.159 45.455 0.00 0.00 0.00 2.69
925 941 2.610374 CGAAGTTTCAGTCCCGTCAAAA 59.390 45.455 0.00 0.00 0.00 2.44
926 942 3.064271 CGAAGTTTCAGTCCCGTCAAAAA 59.936 43.478 0.00 0.00 0.00 1.94
971 987 0.531974 CCTGCCGCCGCTCTTTATAA 60.532 55.000 0.00 0.00 35.36 0.98
972 988 1.295792 CTGCCGCCGCTCTTTATAAA 58.704 50.000 0.00 0.00 35.36 1.40
976 992 4.069304 TGCCGCCGCTCTTTATAAATAAT 58.931 39.130 0.00 0.00 35.36 1.28
985 1001 7.091443 CGCTCTTTATAAATAATCCCGAGAGT 58.909 38.462 10.81 0.00 30.50 3.24
1002 1018 2.577059 TCGAATCCCGAGCACACC 59.423 61.111 0.00 0.00 43.23 4.16
1006 1022 3.268103 AATCCCGAGCACACCACCC 62.268 63.158 0.00 0.00 0.00 4.61
1011 1027 2.959484 CGAGCACACCACCCCATCT 61.959 63.158 0.00 0.00 0.00 2.90
1012 1028 1.078143 GAGCACACCACCCCATCTC 60.078 63.158 0.00 0.00 0.00 2.75
1019 1158 0.916358 ACCACCCCATCTCCTCCAAG 60.916 60.000 0.00 0.00 0.00 3.61
1027 1166 0.179034 ATCTCCTCCAAGCGCATTCC 60.179 55.000 11.47 0.00 0.00 3.01
1030 1169 0.034186 TCCTCCAAGCGCATTCCAAT 60.034 50.000 11.47 0.00 0.00 3.16
1031 1170 0.383231 CCTCCAAGCGCATTCCAATC 59.617 55.000 11.47 0.00 0.00 2.67
1032 1171 1.386533 CTCCAAGCGCATTCCAATCT 58.613 50.000 11.47 0.00 0.00 2.40
1034 1173 1.745087 TCCAAGCGCATTCCAATCTTC 59.255 47.619 11.47 0.00 0.00 2.87
1056 1303 2.753043 CAGCGCTCTTGGCCCAAT 60.753 61.111 7.13 0.00 37.74 3.16
1058 1305 2.439156 GCGCTCTTGGCCCAATCT 60.439 61.111 0.00 0.00 37.74 2.40
1059 1306 2.048603 GCGCTCTTGGCCCAATCTT 61.049 57.895 0.00 0.00 37.74 2.40
1071 1318 1.078214 CAATCTTCCGCCAGAGCCA 60.078 57.895 0.00 0.00 34.57 4.75
1088 1335 1.199558 GCCAGCAAGAAGAGCAAGAAG 59.800 52.381 0.00 0.00 0.00 2.85
3192 7763 6.927294 AATAATCACTCCGCTCCTTTTTAG 57.073 37.500 0.00 0.00 0.00 1.85
3197 7768 1.278127 CTCCGCTCCTTTTTAGTCCCA 59.722 52.381 0.00 0.00 0.00 4.37
3259 7830 8.391106 GTTTGTAGAACAATGTCATGAGTATCC 58.609 37.037 0.00 0.00 38.00 2.59
3355 7926 0.732571 TTTTGCGGGAATCATCGAGC 59.267 50.000 0.00 0.00 0.00 5.03
3356 7927 0.107703 TTTGCGGGAATCATCGAGCT 60.108 50.000 0.00 0.00 32.19 4.09
3357 7928 0.107703 TTGCGGGAATCATCGAGCTT 60.108 50.000 0.00 0.00 32.19 3.74
3358 7929 0.107703 TGCGGGAATCATCGAGCTTT 60.108 50.000 0.00 0.00 32.19 3.51
3359 7930 1.138069 TGCGGGAATCATCGAGCTTTA 59.862 47.619 0.00 0.00 32.19 1.85
3360 7931 2.224281 TGCGGGAATCATCGAGCTTTAT 60.224 45.455 0.00 0.00 32.19 1.40
3361 7932 2.808543 GCGGGAATCATCGAGCTTTATT 59.191 45.455 0.00 0.00 0.00 1.40
3362 7933 3.120511 GCGGGAATCATCGAGCTTTATTC 60.121 47.826 0.00 0.00 0.00 1.75
3363 7934 4.058124 CGGGAATCATCGAGCTTTATTCA 58.942 43.478 0.00 0.00 0.00 2.57
3364 7935 4.692625 CGGGAATCATCGAGCTTTATTCAT 59.307 41.667 0.00 0.00 0.00 2.57
3365 7936 5.180117 CGGGAATCATCGAGCTTTATTCATT 59.820 40.000 0.00 0.00 0.00 2.57
3366 7937 6.606768 GGGAATCATCGAGCTTTATTCATTC 58.393 40.000 0.00 0.00 0.00 2.67
3367 7938 6.205464 GGGAATCATCGAGCTTTATTCATTCA 59.795 38.462 0.00 0.00 0.00 2.57
3368 7939 7.074502 GGAATCATCGAGCTTTATTCATTCAC 58.925 38.462 0.00 0.00 0.00 3.18
3369 7940 7.041508 GGAATCATCGAGCTTTATTCATTCACT 60.042 37.037 0.00 0.00 0.00 3.41
3370 7941 8.893219 AATCATCGAGCTTTATTCATTCACTA 57.107 30.769 0.00 0.00 0.00 2.74
3371 7942 7.936950 TCATCGAGCTTTATTCATTCACTAG 57.063 36.000 0.00 0.00 0.00 2.57
3372 7943 6.422100 TCATCGAGCTTTATTCATTCACTAGC 59.578 38.462 0.00 0.00 0.00 3.42
3373 7944 5.660460 TCGAGCTTTATTCATTCACTAGCA 58.340 37.500 0.00 0.00 0.00 3.49
3374 7945 5.750547 TCGAGCTTTATTCATTCACTAGCAG 59.249 40.000 0.00 0.00 0.00 4.24
3375 7946 5.557893 CGAGCTTTATTCATTCACTAGCAGC 60.558 44.000 0.00 0.00 0.00 5.25
3376 7947 5.435291 AGCTTTATTCATTCACTAGCAGCT 58.565 37.500 0.00 0.00 0.00 4.24
3377 7948 5.526846 AGCTTTATTCATTCACTAGCAGCTC 59.473 40.000 0.00 0.00 0.00 4.09
3378 7949 5.277731 GCTTTATTCATTCACTAGCAGCTCC 60.278 44.000 0.00 0.00 0.00 4.70
3379 7950 3.920231 ATTCATTCACTAGCAGCTCCA 57.080 42.857 0.00 0.00 0.00 3.86
3380 7951 2.975732 TCATTCACTAGCAGCTCCAG 57.024 50.000 0.00 0.00 0.00 3.86
3381 7952 1.134580 TCATTCACTAGCAGCTCCAGC 60.135 52.381 0.00 0.00 42.49 4.85
3392 7963 4.519437 CTCCAGCGCGATCAGCCA 62.519 66.667 12.10 0.00 44.76 4.75
3393 7964 3.804153 CTCCAGCGCGATCAGCCAT 62.804 63.158 12.10 0.00 44.76 4.40
3394 7965 3.646976 CCAGCGCGATCAGCCATG 61.647 66.667 12.10 0.00 44.76 3.66
3395 7966 2.586914 CAGCGCGATCAGCCATGA 60.587 61.111 12.10 0.00 44.76 3.07
3396 7967 2.279985 AGCGCGATCAGCCATGAG 60.280 61.111 12.10 0.00 44.76 2.90
3397 7968 3.344215 GCGCGATCAGCCATGAGG 61.344 66.667 12.10 0.00 44.76 3.86
3407 7978 2.981302 CCATGAGGCTGGTCACGA 59.019 61.111 0.00 0.00 0.00 4.35
3408 7979 1.153489 CCATGAGGCTGGTCACGAG 60.153 63.158 0.00 0.00 0.00 4.18
3409 7980 1.153489 CATGAGGCTGGTCACGAGG 60.153 63.158 0.00 0.00 0.00 4.63
3410 7981 1.305297 ATGAGGCTGGTCACGAGGA 60.305 57.895 0.00 0.00 0.00 3.71
3411 7982 0.904865 ATGAGGCTGGTCACGAGGAA 60.905 55.000 0.00 0.00 0.00 3.36
3412 7983 1.118965 TGAGGCTGGTCACGAGGAAA 61.119 55.000 0.00 0.00 0.00 3.13
3413 7984 0.670854 GAGGCTGGTCACGAGGAAAC 60.671 60.000 0.00 0.00 0.00 2.78
3414 7985 1.671379 GGCTGGTCACGAGGAAACC 60.671 63.158 0.00 0.00 0.00 3.27
3415 7986 1.070786 GCTGGTCACGAGGAAACCA 59.929 57.895 0.00 0.00 40.70 3.67
3417 7988 1.752198 TGGTCACGAGGAAACCAGG 59.248 57.895 0.00 0.00 38.14 4.45
3418 7989 1.003718 GGTCACGAGGAAACCAGGG 60.004 63.158 0.00 0.00 33.11 4.45
3419 7990 1.003718 GTCACGAGGAAACCAGGGG 60.004 63.158 0.00 0.00 0.00 4.79
3420 7991 2.221299 TCACGAGGAAACCAGGGGG 61.221 63.158 0.00 0.00 41.29 5.40
3444 8015 5.288543 GAGTTCATCCAACAATCAGACAC 57.711 43.478 0.00 0.00 37.48 3.67
3445 8016 3.748048 AGTTCATCCAACAATCAGACACG 59.252 43.478 0.00 0.00 37.48 4.49
3446 8017 2.076100 TCATCCAACAATCAGACACGC 58.924 47.619 0.00 0.00 0.00 5.34
3447 8018 1.131126 CATCCAACAATCAGACACGCC 59.869 52.381 0.00 0.00 0.00 5.68
3448 8019 0.396435 TCCAACAATCAGACACGCCT 59.604 50.000 0.00 0.00 0.00 5.52
3449 8020 1.621317 TCCAACAATCAGACACGCCTA 59.379 47.619 0.00 0.00 0.00 3.93
3450 8021 2.002586 CCAACAATCAGACACGCCTAG 58.997 52.381 0.00 0.00 0.00 3.02
3451 8022 2.002586 CAACAATCAGACACGCCTAGG 58.997 52.381 3.67 3.67 0.00 3.02
3452 8023 0.537188 ACAATCAGACACGCCTAGGG 59.463 55.000 11.72 3.13 0.00 3.53
3453 8024 0.537188 CAATCAGACACGCCTAGGGT 59.463 55.000 11.72 3.84 40.76 4.34
3459 8030 3.127533 CACGCCTAGGGTGCTTGC 61.128 66.667 11.72 0.00 39.43 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 8.500238 ACCCTTCTCTTAGGAAGAAGTTAAAAA 58.500 33.333 10.90 0.00 43.70 1.94
18 19 7.937394 CACCCTTCTCTTAGGAAGAAGTTAAAA 59.063 37.037 10.90 0.00 43.70 1.52
19 20 7.450903 CACCCTTCTCTTAGGAAGAAGTTAAA 58.549 38.462 10.90 0.00 43.70 1.52
20 21 6.520231 GCACCCTTCTCTTAGGAAGAAGTTAA 60.520 42.308 10.90 0.00 43.70 2.01
21 22 5.046520 GCACCCTTCTCTTAGGAAGAAGTTA 60.047 44.000 10.90 0.00 43.70 2.24
22 23 4.263112 GCACCCTTCTCTTAGGAAGAAGTT 60.263 45.833 10.90 0.00 43.70 2.66
23 24 3.262151 GCACCCTTCTCTTAGGAAGAAGT 59.738 47.826 10.90 6.31 43.70 3.01
24 25 3.517500 AGCACCCTTCTCTTAGGAAGAAG 59.482 47.826 10.56 7.57 43.70 2.85
25 26 3.521727 AGCACCCTTCTCTTAGGAAGAA 58.478 45.455 10.56 0.00 43.70 2.52
26 27 3.191888 AGCACCCTTCTCTTAGGAAGA 57.808 47.619 10.56 0.00 43.70 2.87
27 28 3.261897 TGAAGCACCCTTCTCTTAGGAAG 59.738 47.826 5.21 0.00 46.13 3.46
28 29 3.248024 TGAAGCACCCTTCTCTTAGGAA 58.752 45.455 5.21 0.00 46.13 3.36
29 30 2.902608 TGAAGCACCCTTCTCTTAGGA 58.097 47.619 5.21 0.00 46.13 2.94
30 31 3.261897 TCTTGAAGCACCCTTCTCTTAGG 59.738 47.826 5.21 0.00 46.13 2.69
31 32 4.502962 CTCTTGAAGCACCCTTCTCTTAG 58.497 47.826 5.21 0.00 46.13 2.18
32 33 4.543590 CTCTTGAAGCACCCTTCTCTTA 57.456 45.455 5.21 0.00 46.13 2.10
33 34 3.415457 CTCTTGAAGCACCCTTCTCTT 57.585 47.619 5.21 0.00 46.13 2.85
45 46 4.093703 CAGCAGAGAATGAAGCTCTTGAAG 59.906 45.833 0.00 0.00 40.60 3.02
46 47 4.001652 CAGCAGAGAATGAAGCTCTTGAA 58.998 43.478 0.00 0.00 40.60 2.69
47 48 3.597255 CAGCAGAGAATGAAGCTCTTGA 58.403 45.455 0.00 0.00 40.60 3.02
48 49 2.678836 CCAGCAGAGAATGAAGCTCTTG 59.321 50.000 0.00 0.00 40.60 3.02
49 50 2.355920 CCCAGCAGAGAATGAAGCTCTT 60.356 50.000 0.00 0.00 40.60 2.85
50 51 1.209990 CCCAGCAGAGAATGAAGCTCT 59.790 52.381 0.00 0.00 43.21 4.09
51 52 1.666054 CCCAGCAGAGAATGAAGCTC 58.334 55.000 0.00 0.00 34.61 4.09
52 53 0.255318 CCCCAGCAGAGAATGAAGCT 59.745 55.000 0.00 0.00 37.95 3.74
53 54 0.034670 ACCCCAGCAGAGAATGAAGC 60.035 55.000 0.00 0.00 0.00 3.86
54 55 1.280133 TCACCCCAGCAGAGAATGAAG 59.720 52.381 0.00 0.00 0.00 3.02
55 56 1.003580 GTCACCCCAGCAGAGAATGAA 59.996 52.381 0.00 0.00 0.00 2.57
56 57 0.615331 GTCACCCCAGCAGAGAATGA 59.385 55.000 0.00 0.00 0.00 2.57
57 58 0.617413 AGTCACCCCAGCAGAGAATG 59.383 55.000 0.00 0.00 0.00 2.67
58 59 1.366319 AAGTCACCCCAGCAGAGAAT 58.634 50.000 0.00 0.00 0.00 2.40
59 60 1.140312 AAAGTCACCCCAGCAGAGAA 58.860 50.000 0.00 0.00 0.00 2.87
60 61 1.140312 AAAAGTCACCCCAGCAGAGA 58.860 50.000 0.00 0.00 0.00 3.10
61 62 1.882623 GAAAAAGTCACCCCAGCAGAG 59.117 52.381 0.00 0.00 0.00 3.35
62 63 1.478654 GGAAAAAGTCACCCCAGCAGA 60.479 52.381 0.00 0.00 0.00 4.26
63 64 0.961753 GGAAAAAGTCACCCCAGCAG 59.038 55.000 0.00 0.00 0.00 4.24
64 65 0.555769 AGGAAAAAGTCACCCCAGCA 59.444 50.000 0.00 0.00 0.00 4.41
65 66 1.248486 GAGGAAAAAGTCACCCCAGC 58.752 55.000 0.00 0.00 0.00 4.85
66 67 2.508526 CTGAGGAAAAAGTCACCCCAG 58.491 52.381 0.00 0.00 0.00 4.45
67 68 1.478654 GCTGAGGAAAAAGTCACCCCA 60.479 52.381 0.00 0.00 0.00 4.96
68 69 1.248486 GCTGAGGAAAAAGTCACCCC 58.752 55.000 0.00 0.00 0.00 4.95
69 70 1.248486 GGCTGAGGAAAAAGTCACCC 58.752 55.000 0.00 0.00 0.00 4.61
70 71 0.875059 CGGCTGAGGAAAAAGTCACC 59.125 55.000 0.00 0.00 0.00 4.02
71 72 1.801178 CTCGGCTGAGGAAAAAGTCAC 59.199 52.381 15.27 0.00 38.65 3.67
72 73 1.691976 TCTCGGCTGAGGAAAAAGTCA 59.308 47.619 22.38 0.00 42.79 3.41
73 74 2.457366 TCTCGGCTGAGGAAAAAGTC 57.543 50.000 22.38 0.00 42.79 3.01
74 75 2.368875 TCTTCTCGGCTGAGGAAAAAGT 59.631 45.455 22.38 0.00 42.79 2.66
75 76 3.045601 TCTTCTCGGCTGAGGAAAAAG 57.954 47.619 22.38 17.15 42.79 2.27
76 77 3.181454 ACTTCTTCTCGGCTGAGGAAAAA 60.181 43.478 22.38 9.99 42.79 1.94
77 78 2.368875 ACTTCTTCTCGGCTGAGGAAAA 59.631 45.455 22.38 6.02 42.79 2.29
78 79 1.971357 ACTTCTTCTCGGCTGAGGAAA 59.029 47.619 22.38 9.43 42.79 3.13
79 80 1.546476 GACTTCTTCTCGGCTGAGGAA 59.454 52.381 22.38 16.52 42.79 3.36
80 81 1.178276 GACTTCTTCTCGGCTGAGGA 58.822 55.000 22.38 13.49 42.79 3.71
81 82 0.891373 TGACTTCTTCTCGGCTGAGG 59.109 55.000 22.38 7.57 42.79 3.86
82 83 1.543802 ACTGACTTCTTCTCGGCTGAG 59.456 52.381 16.98 16.98 43.99 3.35
83 84 1.542030 GACTGACTTCTTCTCGGCTGA 59.458 52.381 0.00 0.00 0.00 4.26
84 85 1.543802 AGACTGACTTCTTCTCGGCTG 59.456 52.381 0.00 0.00 0.00 4.85
85 86 1.917872 AGACTGACTTCTTCTCGGCT 58.082 50.000 0.00 0.00 0.00 5.52
86 87 2.029828 TCAAGACTGACTTCTTCTCGGC 60.030 50.000 0.00 0.00 36.61 5.54
87 88 3.924918 TCAAGACTGACTTCTTCTCGG 57.075 47.619 0.00 0.00 36.61 4.63
88 89 6.422100 TCAAAATCAAGACTGACTTCTTCTCG 59.578 38.462 0.00 0.00 36.61 4.04
89 90 7.721286 TCAAAATCAAGACTGACTTCTTCTC 57.279 36.000 0.00 0.00 36.61 2.87
90 91 7.012799 GGTTCAAAATCAAGACTGACTTCTTCT 59.987 37.037 0.00 0.00 36.61 2.85
91 92 7.135467 GGTTCAAAATCAAGACTGACTTCTTC 58.865 38.462 0.00 0.00 36.61 2.87
92 93 6.039829 GGGTTCAAAATCAAGACTGACTTCTT 59.960 38.462 0.00 0.00 36.61 2.52
93 94 5.532779 GGGTTCAAAATCAAGACTGACTTCT 59.467 40.000 0.00 0.00 36.61 2.85
94 95 5.299279 TGGGTTCAAAATCAAGACTGACTTC 59.701 40.000 0.00 0.00 36.61 3.01
95 96 5.067805 GTGGGTTCAAAATCAAGACTGACTT 59.932 40.000 0.00 0.00 39.70 3.01
96 97 4.580580 GTGGGTTCAAAATCAAGACTGACT 59.419 41.667 0.00 0.00 33.30 3.41
97 98 4.580580 AGTGGGTTCAAAATCAAGACTGAC 59.419 41.667 0.00 0.00 33.30 3.51
98 99 4.792068 AGTGGGTTCAAAATCAAGACTGA 58.208 39.130 0.00 0.00 35.56 3.41
99 100 5.765182 AGTAGTGGGTTCAAAATCAAGACTG 59.235 40.000 0.00 0.00 0.00 3.51
100 101 5.941788 AGTAGTGGGTTCAAAATCAAGACT 58.058 37.500 0.00 0.00 0.00 3.24
101 102 7.065923 GGATAGTAGTGGGTTCAAAATCAAGAC 59.934 40.741 0.00 0.00 0.00 3.01
102 103 7.037586 AGGATAGTAGTGGGTTCAAAATCAAGA 60.038 37.037 0.00 0.00 0.00 3.02
103 104 7.112779 AGGATAGTAGTGGGTTCAAAATCAAG 58.887 38.462 0.00 0.00 0.00 3.02
104 105 7.027874 AGGATAGTAGTGGGTTCAAAATCAA 57.972 36.000 0.00 0.00 0.00 2.57
105 106 6.443849 AGAGGATAGTAGTGGGTTCAAAATCA 59.556 38.462 0.00 0.00 0.00 2.57
106 107 6.890293 AGAGGATAGTAGTGGGTTCAAAATC 58.110 40.000 0.00 0.00 0.00 2.17
107 108 6.893020 AGAGGATAGTAGTGGGTTCAAAAT 57.107 37.500 0.00 0.00 0.00 1.82
108 109 6.697641 AAGAGGATAGTAGTGGGTTCAAAA 57.302 37.500 0.00 0.00 0.00 2.44
109 110 6.697641 AAAGAGGATAGTAGTGGGTTCAAA 57.302 37.500 0.00 0.00 0.00 2.69
110 111 6.697641 AAAAGAGGATAGTAGTGGGTTCAA 57.302 37.500 0.00 0.00 0.00 2.69
111 112 6.697641 AAAAAGAGGATAGTAGTGGGTTCA 57.302 37.500 0.00 0.00 0.00 3.18
144 145 9.928236 GCTCAAAAGCTAGTGATTTCTATAAAG 57.072 33.333 0.03 0.00 45.55 1.85
162 163 5.916883 CACAAACTAAGGACATGCTCAAAAG 59.083 40.000 0.00 0.00 0.00 2.27
163 164 5.359576 ACACAAACTAAGGACATGCTCAAAA 59.640 36.000 0.00 0.00 0.00 2.44
164 165 4.887071 ACACAAACTAAGGACATGCTCAAA 59.113 37.500 0.00 0.00 0.00 2.69
165 166 4.275689 CACACAAACTAAGGACATGCTCAA 59.724 41.667 0.00 0.00 0.00 3.02
166 167 3.814842 CACACAAACTAAGGACATGCTCA 59.185 43.478 0.00 0.00 0.00 4.26
167 168 4.065088 TCACACAAACTAAGGACATGCTC 58.935 43.478 0.00 0.00 0.00 4.26
168 169 3.815401 GTCACACAAACTAAGGACATGCT 59.185 43.478 0.00 0.00 0.00 3.79
169 170 3.563808 TGTCACACAAACTAAGGACATGC 59.436 43.478 0.00 0.00 30.99 4.06
170 171 4.214119 CCTGTCACACAAACTAAGGACATG 59.786 45.833 0.00 0.00 35.06 3.21
171 172 4.102524 TCCTGTCACACAAACTAAGGACAT 59.897 41.667 0.00 0.00 35.06 3.06
172 173 3.452990 TCCTGTCACACAAACTAAGGACA 59.547 43.478 0.00 0.00 34.46 4.02
173 174 3.808174 GTCCTGTCACACAAACTAAGGAC 59.192 47.826 3.40 3.40 43.80 3.85
174 175 3.181458 GGTCCTGTCACACAAACTAAGGA 60.181 47.826 0.00 0.00 0.00 3.36
175 176 3.139077 GGTCCTGTCACACAAACTAAGG 58.861 50.000 0.00 0.00 0.00 2.69
176 177 3.804036 TGGTCCTGTCACACAAACTAAG 58.196 45.455 0.00 0.00 0.00 2.18
177 178 3.916359 TGGTCCTGTCACACAAACTAA 57.084 42.857 0.00 0.00 0.00 2.24
178 179 4.431416 AATGGTCCTGTCACACAAACTA 57.569 40.909 0.00 0.00 0.00 2.24
179 180 3.297134 AATGGTCCTGTCACACAAACT 57.703 42.857 0.00 0.00 0.00 2.66
180 181 3.502211 CCTAATGGTCCTGTCACACAAAC 59.498 47.826 0.00 0.00 0.00 2.93
181 182 3.497763 CCCTAATGGTCCTGTCACACAAA 60.498 47.826 0.00 0.00 0.00 2.83
182 183 2.039746 CCCTAATGGTCCTGTCACACAA 59.960 50.000 0.00 0.00 0.00 3.33
183 184 1.628340 CCCTAATGGTCCTGTCACACA 59.372 52.381 0.00 0.00 0.00 3.72
184 185 1.679032 GCCCTAATGGTCCTGTCACAC 60.679 57.143 0.00 0.00 36.04 3.82
185 186 0.618458 GCCCTAATGGTCCTGTCACA 59.382 55.000 0.00 0.00 36.04 3.58
186 187 0.107165 GGCCCTAATGGTCCTGTCAC 60.107 60.000 0.00 0.00 36.04 3.67
187 188 0.548926 TGGCCCTAATGGTCCTGTCA 60.549 55.000 0.00 0.00 38.27 3.58
188 189 0.846693 ATGGCCCTAATGGTCCTGTC 59.153 55.000 0.00 0.00 38.27 3.51
189 190 0.846693 GATGGCCCTAATGGTCCTGT 59.153 55.000 0.00 0.00 38.27 4.00
190 191 0.111253 GGATGGCCCTAATGGTCCTG 59.889 60.000 0.00 0.00 38.27 3.86
191 192 1.418908 CGGATGGCCCTAATGGTCCT 61.419 60.000 0.00 0.00 38.27 3.85
192 193 1.073199 CGGATGGCCCTAATGGTCC 59.927 63.158 0.00 0.00 38.27 4.46
193 194 1.073199 CCGGATGGCCCTAATGGTC 59.927 63.158 0.00 0.00 40.11 4.02
194 195 1.385347 TCCGGATGGCCCTAATGGT 60.385 57.895 0.00 0.00 36.04 3.55
195 196 1.127567 TCTCCGGATGGCCCTAATGG 61.128 60.000 3.57 0.00 34.14 3.16
196 197 0.322975 CTCTCCGGATGGCCCTAATG 59.677 60.000 3.57 0.00 34.14 1.90
197 198 0.104934 ACTCTCCGGATGGCCCTAAT 60.105 55.000 3.57 0.00 34.14 1.73
198 199 1.048724 CACTCTCCGGATGGCCCTAA 61.049 60.000 3.57 0.00 34.14 2.69
199 200 1.457643 CACTCTCCGGATGGCCCTA 60.458 63.158 3.57 0.00 34.14 3.53
200 201 2.765807 CACTCTCCGGATGGCCCT 60.766 66.667 3.57 0.00 34.14 5.19
201 202 1.700042 ATTCACTCTCCGGATGGCCC 61.700 60.000 3.57 0.00 34.14 5.80
202 203 0.250081 GATTCACTCTCCGGATGGCC 60.250 60.000 3.57 0.00 34.14 5.36
203 204 0.465705 TGATTCACTCTCCGGATGGC 59.534 55.000 3.57 0.00 34.14 4.40
204 205 2.988010 TTGATTCACTCTCCGGATGG 57.012 50.000 3.57 3.05 0.00 3.51
205 206 4.063998 TGATTGATTCACTCTCCGGATG 57.936 45.455 3.57 0.00 0.00 3.51
216 217 0.107214 GGGCGGAGGTGATTGATTCA 60.107 55.000 0.00 0.00 0.00 2.57
222 223 0.684153 CCATTTGGGCGGAGGTGATT 60.684 55.000 0.00 0.00 0.00 2.57
243 244 2.670479 CATCGCGCATCTGATCTACTT 58.330 47.619 8.75 0.00 0.00 2.24
244 245 1.668337 GCATCGCGCATCTGATCTACT 60.668 52.381 8.75 0.00 41.79 2.57
332 333 1.483415 GGTTCGACAACATAGGGGCTA 59.517 52.381 0.00 0.00 33.70 3.93
333 334 0.252197 GGTTCGACAACATAGGGGCT 59.748 55.000 0.00 0.00 33.70 5.19
334 335 0.035820 TGGTTCGACAACATAGGGGC 60.036 55.000 0.00 0.00 33.70 5.80
335 336 2.483014 TTGGTTCGACAACATAGGGG 57.517 50.000 0.00 0.00 33.70 4.79
406 407 1.079543 CTCCCTCTGCTTGACACGG 60.080 63.158 0.00 0.00 0.00 4.94
427 428 2.028130 CATACCCTCAGCTCGTTCTCT 58.972 52.381 0.00 0.00 0.00 3.10
475 476 4.965200 GGTCTATACCTTCAAGGAGCAT 57.035 45.455 11.59 2.84 43.08 3.79
488 489 6.222038 TGTTGGTTGATGAGAGGTCTATAC 57.778 41.667 0.00 0.00 0.00 1.47
489 490 6.239036 CGATGTTGGTTGATGAGAGGTCTATA 60.239 42.308 0.00 0.00 0.00 1.31
490 491 5.452496 CGATGTTGGTTGATGAGAGGTCTAT 60.452 44.000 0.00 0.00 0.00 1.98
491 492 4.142160 CGATGTTGGTTGATGAGAGGTCTA 60.142 45.833 0.00 0.00 0.00 2.59
492 493 3.368843 CGATGTTGGTTGATGAGAGGTCT 60.369 47.826 0.00 0.00 0.00 3.85
499 500 3.073678 CCTTCACGATGTTGGTTGATGA 58.926 45.455 0.00 0.00 0.00 2.92
509 510 4.096003 CCGGGGCCTTCACGATGT 62.096 66.667 0.84 0.00 0.00 3.06
532 533 2.432510 CCATGACCTACTCTTCCTGGTC 59.567 54.545 0.00 0.00 46.53 4.02
534 535 1.765314 CCCATGACCTACTCTTCCTGG 59.235 57.143 0.00 0.00 0.00 4.45
535 536 2.697751 CTCCCATGACCTACTCTTCCTG 59.302 54.545 0.00 0.00 0.00 3.86
548 549 1.327690 GGTGCTACCGTCTCCCATGA 61.328 60.000 0.00 0.00 0.00 3.07
553 554 1.716826 CTCGAGGTGCTACCGTCTCC 61.717 65.000 3.91 0.00 44.90 3.71
562 563 3.374402 CACGGGACTCGAGGTGCT 61.374 66.667 18.41 0.00 42.43 4.40
680 688 5.704053 ACGTCAAACCTAATTTAAGTGGAGG 59.296 40.000 0.00 0.00 0.00 4.30
690 698 8.795842 TCCATACAATTACGTCAAACCTAATT 57.204 30.769 0.00 0.00 0.00 1.40
733 748 7.775053 AATCATTTACACAACCACATACCTT 57.225 32.000 0.00 0.00 0.00 3.50
761 776 1.280982 CATTGATCGGTCACACCTCG 58.719 55.000 0.00 0.00 35.66 4.63
800 815 2.920912 ACCCTCAAACTCCCGCGA 60.921 61.111 8.23 0.00 0.00 5.87
803 818 1.614241 ATCCGACCCTCAAACTCCCG 61.614 60.000 0.00 0.00 0.00 5.14
839 855 8.921353 AACATATGTACTCTAAGACCGTCTAT 57.079 34.615 9.21 0.00 0.00 1.98
844 860 7.262772 TCCAAAACATATGTACTCTAAGACCG 58.737 38.462 9.21 0.00 0.00 4.79
872 888 2.541466 TGGGTTTTCTCTCTCTCCTCC 58.459 52.381 0.00 0.00 0.00 4.30
882 898 4.797349 CGATACTAGTCGTTGGGTTTTCTC 59.203 45.833 0.00 0.00 36.88 2.87
883 899 4.460382 TCGATACTAGTCGTTGGGTTTTCT 59.540 41.667 0.00 0.00 42.07 2.52
884 900 4.737054 TCGATACTAGTCGTTGGGTTTTC 58.263 43.478 0.00 0.00 42.07 2.29
885 901 4.789012 TCGATACTAGTCGTTGGGTTTT 57.211 40.909 0.00 0.00 42.07 2.43
896 912 4.096081 CGGGACTGAAACTTCGATACTAGT 59.904 45.833 0.00 0.00 0.00 2.57
905 921 4.625972 TTTTTGACGGGACTGAAACTTC 57.374 40.909 0.00 0.00 0.00 3.01
929 945 9.442047 CAGGAGATAACTGAAACTTCAATACTT 57.558 33.333 0.00 0.00 38.20 2.24
930 946 7.550906 GCAGGAGATAACTGAAACTTCAATACT 59.449 37.037 0.00 0.00 38.20 2.12
931 947 7.201652 GGCAGGAGATAACTGAAACTTCAATAC 60.202 40.741 0.00 0.00 38.20 1.89
932 948 6.823689 GGCAGGAGATAACTGAAACTTCAATA 59.176 38.462 0.00 0.00 38.20 1.90
933 949 5.649831 GGCAGGAGATAACTGAAACTTCAAT 59.350 40.000 0.00 0.00 38.20 2.57
934 950 5.003804 GGCAGGAGATAACTGAAACTTCAA 58.996 41.667 0.00 0.00 38.20 2.69
935 951 4.579869 GGCAGGAGATAACTGAAACTTCA 58.420 43.478 0.00 0.00 38.20 3.02
936 952 3.619038 CGGCAGGAGATAACTGAAACTTC 59.381 47.826 0.00 0.00 38.20 3.01
971 987 3.258622 GGGATTCGACTCTCGGGATTATT 59.741 47.826 2.56 0.00 40.88 1.40
972 988 2.826725 GGGATTCGACTCTCGGGATTAT 59.173 50.000 2.56 0.00 40.88 1.28
976 992 1.822613 CGGGATTCGACTCTCGGGA 60.823 63.158 16.60 0.00 40.88 5.14
985 1001 2.279810 TGGTGTGCTCGGGATTCGA 61.280 57.895 0.00 0.00 46.77 3.71
998 1014 1.616628 GGAGGAGATGGGGTGGTGT 60.617 63.158 0.00 0.00 0.00 4.16
999 1015 1.207488 TTGGAGGAGATGGGGTGGTG 61.207 60.000 0.00 0.00 0.00 4.17
1002 1018 1.225704 GCTTGGAGGAGATGGGGTG 59.774 63.158 0.00 0.00 0.00 4.61
1006 1022 0.465097 AATGCGCTTGGAGGAGATGG 60.465 55.000 9.73 0.00 0.00 3.51
1008 1024 0.179034 GGAATGCGCTTGGAGGAGAT 60.179 55.000 9.73 0.00 0.00 2.75
1011 1027 0.034186 ATTGGAATGCGCTTGGAGGA 60.034 50.000 9.73 0.00 0.00 3.71
1012 1028 0.383231 GATTGGAATGCGCTTGGAGG 59.617 55.000 9.73 0.00 0.00 4.30
1019 1158 1.298638 GCGGAAGATTGGAATGCGC 60.299 57.895 0.00 0.00 45.96 6.09
1047 1294 2.362375 GGCGGAAGATTGGGCCAA 60.362 61.111 23.33 23.33 44.91 4.52
1052 1299 1.821332 GGCTCTGGCGGAAGATTGG 60.821 63.158 0.00 0.00 39.81 3.16
1055 1302 2.906458 CTGGCTCTGGCGGAAGAT 59.094 61.111 0.00 0.00 39.81 2.40
1056 1303 4.087892 GCTGGCTCTGGCGGAAGA 62.088 66.667 0.00 0.00 39.81 2.87
1058 1305 3.907260 CTTGCTGGCTCTGGCGGAA 62.907 63.158 0.00 0.00 39.81 4.30
1059 1306 4.399395 CTTGCTGGCTCTGGCGGA 62.399 66.667 4.09 0.00 39.81 5.54
1071 1318 1.155042 CGCTTCTTGCTCTTCTTGCT 58.845 50.000 0.00 0.00 40.11 3.91
1238 1488 2.124942 CCCTTCTTGCCGGCTCTC 60.125 66.667 29.70 0.00 0.00 3.20
3168 7401 6.884836 ACTAAAAAGGAGCGGAGTGATTATTT 59.115 34.615 0.00 0.00 0.00 1.40
3170 7403 5.990668 ACTAAAAAGGAGCGGAGTGATTAT 58.009 37.500 0.00 0.00 0.00 1.28
3171 7404 5.416271 ACTAAAAAGGAGCGGAGTGATTA 57.584 39.130 0.00 0.00 0.00 1.75
3259 7830 4.183865 TCTTCATGCACATTTCTACTCCG 58.816 43.478 0.00 0.00 0.00 4.63
3335 7906 1.132262 GCTCGATGATTCCCGCAAAAA 59.868 47.619 0.00 0.00 0.00 1.94
3336 7907 0.732571 GCTCGATGATTCCCGCAAAA 59.267 50.000 0.00 0.00 0.00 2.44
3337 7908 0.107703 AGCTCGATGATTCCCGCAAA 60.108 50.000 0.00 0.00 0.00 3.68
3338 7909 0.107703 AAGCTCGATGATTCCCGCAA 60.108 50.000 0.00 0.00 0.00 4.85
3339 7910 0.107703 AAAGCTCGATGATTCCCGCA 60.108 50.000 0.00 0.00 0.00 5.69
3340 7911 1.865865 TAAAGCTCGATGATTCCCGC 58.134 50.000 0.00 0.00 0.00 6.13
3341 7912 4.058124 TGAATAAAGCTCGATGATTCCCG 58.942 43.478 0.00 0.00 0.00 5.14
3342 7913 6.205464 TGAATGAATAAAGCTCGATGATTCCC 59.795 38.462 0.00 0.00 0.00 3.97
3343 7914 7.041508 AGTGAATGAATAAAGCTCGATGATTCC 60.042 37.037 0.00 0.00 0.00 3.01
3344 7915 7.859598 AGTGAATGAATAAAGCTCGATGATTC 58.140 34.615 0.00 0.00 0.00 2.52
3345 7916 7.798596 AGTGAATGAATAAAGCTCGATGATT 57.201 32.000 0.00 0.00 0.00 2.57
3346 7917 7.117523 GCTAGTGAATGAATAAAGCTCGATGAT 59.882 37.037 0.00 0.00 0.00 2.45
3347 7918 6.422100 GCTAGTGAATGAATAAAGCTCGATGA 59.578 38.462 0.00 0.00 0.00 2.92
3348 7919 6.201615 TGCTAGTGAATGAATAAAGCTCGATG 59.798 38.462 0.00 0.00 0.00 3.84
3349 7920 6.283694 TGCTAGTGAATGAATAAAGCTCGAT 58.716 36.000 0.00 0.00 0.00 3.59
3350 7921 5.660460 TGCTAGTGAATGAATAAAGCTCGA 58.340 37.500 0.00 0.00 0.00 4.04
3351 7922 5.557893 GCTGCTAGTGAATGAATAAAGCTCG 60.558 44.000 0.00 0.00 0.00 5.03
3352 7923 5.526846 AGCTGCTAGTGAATGAATAAAGCTC 59.473 40.000 0.00 0.00 31.99 4.09
3353 7924 5.435291 AGCTGCTAGTGAATGAATAAAGCT 58.565 37.500 0.00 0.00 32.66 3.74
3354 7925 5.277731 GGAGCTGCTAGTGAATGAATAAAGC 60.278 44.000 0.15 0.00 0.00 3.51
3355 7926 5.819379 TGGAGCTGCTAGTGAATGAATAAAG 59.181 40.000 6.82 0.00 0.00 1.85
3356 7927 5.744171 TGGAGCTGCTAGTGAATGAATAAA 58.256 37.500 6.82 0.00 0.00 1.40
3357 7928 5.357742 TGGAGCTGCTAGTGAATGAATAA 57.642 39.130 6.82 0.00 0.00 1.40
3358 7929 4.741837 GCTGGAGCTGCTAGTGAATGAATA 60.742 45.833 6.82 0.00 38.21 1.75
3359 7930 3.806380 CTGGAGCTGCTAGTGAATGAAT 58.194 45.455 6.82 0.00 0.00 2.57
3360 7931 2.679059 GCTGGAGCTGCTAGTGAATGAA 60.679 50.000 6.82 0.00 38.21 2.57
3361 7932 1.134580 GCTGGAGCTGCTAGTGAATGA 60.135 52.381 6.82 0.00 38.21 2.57
3362 7933 1.297664 GCTGGAGCTGCTAGTGAATG 58.702 55.000 6.82 0.00 38.21 2.67
3363 7934 0.179089 CGCTGGAGCTGCTAGTGAAT 60.179 55.000 6.82 0.00 37.77 2.57
3364 7935 1.216444 CGCTGGAGCTGCTAGTGAA 59.784 57.895 6.82 0.00 37.77 3.18
3365 7936 2.888111 CGCTGGAGCTGCTAGTGA 59.112 61.111 6.82 0.00 37.77 3.41
3366 7937 2.889503 GCGCTGGAGCTGCTAGTG 60.890 66.667 6.82 5.31 38.49 2.74
3367 7938 4.504916 CGCGCTGGAGCTGCTAGT 62.505 66.667 6.82 0.00 38.02 2.57
3368 7939 3.496875 ATCGCGCTGGAGCTGCTAG 62.497 63.158 6.82 0.00 38.02 3.42
3369 7940 3.490793 GATCGCGCTGGAGCTGCTA 62.491 63.158 6.82 3.95 38.02 3.49
3370 7941 4.887987 GATCGCGCTGGAGCTGCT 62.888 66.667 6.82 0.00 38.02 4.24
3372 7943 2.960659 CTGATCGCGCTGGAGCTG 60.961 66.667 5.56 0.00 39.32 4.24
3373 7944 4.887987 GCTGATCGCGCTGGAGCT 62.888 66.667 5.56 0.00 39.32 4.09
3375 7946 3.804153 ATGGCTGATCGCGCTGGAG 62.804 63.158 5.56 0.00 40.44 3.86
3376 7947 3.853487 ATGGCTGATCGCGCTGGA 61.853 61.111 5.56 0.00 40.44 3.86
3377 7948 3.646976 CATGGCTGATCGCGCTGG 61.647 66.667 5.56 0.00 40.44 4.85
3378 7949 2.586914 TCATGGCTGATCGCGCTG 60.587 61.111 5.56 0.00 40.44 5.18
3379 7950 2.279985 CTCATGGCTGATCGCGCT 60.280 61.111 5.56 0.00 40.44 5.92
3380 7951 3.344215 CCTCATGGCTGATCGCGC 61.344 66.667 0.00 0.00 40.44 6.86
3390 7961 1.153489 CTCGTGACCAGCCTCATGG 60.153 63.158 0.00 0.00 46.47 3.66
3391 7962 1.153489 CCTCGTGACCAGCCTCATG 60.153 63.158 0.00 0.00 0.00 3.07
3392 7963 0.904865 TTCCTCGTGACCAGCCTCAT 60.905 55.000 0.00 0.00 0.00 2.90
3393 7964 1.118965 TTTCCTCGTGACCAGCCTCA 61.119 55.000 0.00 0.00 0.00 3.86
3394 7965 0.670854 GTTTCCTCGTGACCAGCCTC 60.671 60.000 0.00 0.00 0.00 4.70
3395 7966 1.371558 GTTTCCTCGTGACCAGCCT 59.628 57.895 0.00 0.00 0.00 4.58
3396 7967 1.671379 GGTTTCCTCGTGACCAGCC 60.671 63.158 0.00 0.00 33.61 4.85
3397 7968 1.070786 TGGTTTCCTCGTGACCAGC 59.929 57.895 0.00 0.00 38.47 4.85
3399 7970 1.752198 CCTGGTTTCCTCGTGACCA 59.248 57.895 0.00 0.00 40.95 4.02
3400 7971 1.003718 CCCTGGTTTCCTCGTGACC 60.004 63.158 0.00 0.00 0.00 4.02
3401 7972 1.003718 CCCCTGGTTTCCTCGTGAC 60.004 63.158 0.00 0.00 0.00 3.67
3402 7973 2.221299 CCCCCTGGTTTCCTCGTGA 61.221 63.158 0.00 0.00 0.00 4.35
3403 7974 2.351276 CCCCCTGGTTTCCTCGTG 59.649 66.667 0.00 0.00 0.00 4.35
3418 7989 2.291540 TGATTGTTGGATGAACTCCCCC 60.292 50.000 0.00 0.00 44.23 5.40
3419 7990 3.019564 CTGATTGTTGGATGAACTCCCC 58.980 50.000 0.00 0.00 44.23 4.81
3420 7991 3.691609 GTCTGATTGTTGGATGAACTCCC 59.308 47.826 0.00 0.00 44.23 4.30
3421 7992 4.154918 GTGTCTGATTGTTGGATGAACTCC 59.845 45.833 0.00 0.00 45.19 3.85
3422 7993 4.143030 CGTGTCTGATTGTTGGATGAACTC 60.143 45.833 0.00 0.00 35.37 3.01
3423 7994 3.748048 CGTGTCTGATTGTTGGATGAACT 59.252 43.478 0.00 0.00 35.37 3.01
3424 7995 3.667960 GCGTGTCTGATTGTTGGATGAAC 60.668 47.826 0.00 0.00 34.84 3.18
3425 7996 2.483877 GCGTGTCTGATTGTTGGATGAA 59.516 45.455 0.00 0.00 0.00 2.57
3426 7997 2.076100 GCGTGTCTGATTGTTGGATGA 58.924 47.619 0.00 0.00 0.00 2.92
3427 7998 1.131126 GGCGTGTCTGATTGTTGGATG 59.869 52.381 0.00 0.00 0.00 3.51
3428 7999 1.003580 AGGCGTGTCTGATTGTTGGAT 59.996 47.619 0.00 0.00 0.00 3.41
3429 8000 0.396435 AGGCGTGTCTGATTGTTGGA 59.604 50.000 0.00 0.00 0.00 3.53
3430 8001 2.002586 CTAGGCGTGTCTGATTGTTGG 58.997 52.381 0.00 0.00 0.00 3.77
3431 8002 2.002586 CCTAGGCGTGTCTGATTGTTG 58.997 52.381 0.00 0.00 0.00 3.33
3432 8003 1.066143 CCCTAGGCGTGTCTGATTGTT 60.066 52.381 2.05 0.00 0.00 2.83
3433 8004 0.537188 CCCTAGGCGTGTCTGATTGT 59.463 55.000 2.05 0.00 0.00 2.71
3434 8005 0.537188 ACCCTAGGCGTGTCTGATTG 59.463 55.000 2.05 0.00 0.00 2.67
3435 8006 0.537188 CACCCTAGGCGTGTCTGATT 59.463 55.000 17.64 0.00 0.00 2.57
3436 8007 1.961180 GCACCCTAGGCGTGTCTGAT 61.961 60.000 23.32 0.00 33.61 2.90
3437 8008 2.646175 GCACCCTAGGCGTGTCTGA 61.646 63.158 23.32 0.00 33.61 3.27
3438 8009 2.125512 GCACCCTAGGCGTGTCTG 60.126 66.667 23.32 5.13 33.61 3.51
3439 8010 1.913762 AAGCACCCTAGGCGTGTCT 60.914 57.895 23.32 18.95 36.08 3.41
3440 8011 1.741770 CAAGCACCCTAGGCGTGTC 60.742 63.158 23.32 17.62 36.26 3.67
3441 8012 2.347490 CAAGCACCCTAGGCGTGT 59.653 61.111 23.32 7.60 36.26 4.49
3442 8013 3.127533 GCAAGCACCCTAGGCGTG 61.128 66.667 20.25 20.25 42.47 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.