Multiple sequence alignment - TraesCS3A01G014400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G014400 chr3A 100.000 2831 0 0 1 2831 9963436 9966266 0.000000e+00 5228.0
1 TraesCS3A01G014400 chr3A 81.915 282 31 10 2113 2380 473201246 473200971 1.320000e-53 220.0
2 TraesCS3A01G014400 chr7D 93.939 990 33 1 1207 2196 12037262 12036300 0.000000e+00 1471.0
3 TraesCS3A01G014400 chr7D 94.191 878 32 8 1207 2074 531106825 531107693 0.000000e+00 1321.0
4 TraesCS3A01G014400 chr7D 89.162 489 31 2 739 1211 12037822 12037340 8.740000e-165 590.0
5 TraesCS3A01G014400 chr7D 89.006 473 33 3 739 1211 531106294 531106747 4.090000e-158 568.0
6 TraesCS3A01G014400 chr7D 96.886 289 7 2 2543 2831 531109647 531109933 1.530000e-132 483.0
7 TraesCS3A01G014400 chr7D 96.233 292 9 1 2542 2831 12031536 12031245 7.100000e-131 477.0
8 TraesCS3A01G014400 chr7D 93.811 307 19 0 30 336 637091223 637091529 1.990000e-126 462.0
9 TraesCS3A01G014400 chr7D 93.528 309 20 0 29 337 632095850 632095542 7.150000e-126 460.0
10 TraesCS3A01G014400 chr7D 95.000 60 3 0 681 740 531106195 531106254 8.350000e-16 95.3
11 TraesCS3A01G014400 chr7D 87.013 77 7 2 2479 2554 488626879 488626953 1.810000e-12 84.2
12 TraesCS3A01G014400 chr7D 92.593 54 3 1 338 391 431076108 431076160 3.020000e-10 76.8
13 TraesCS3A01G014400 chr5D 95.776 876 29 5 1207 2074 69345694 69344819 0.000000e+00 1406.0
14 TraesCS3A01G014400 chr5D 94.784 786 34 3 1207 1988 520989697 520988915 0.000000e+00 1218.0
15 TraesCS3A01G014400 chr5D 91.898 469 24 10 744 1211 69346186 69345731 0.000000e+00 643.0
16 TraesCS3A01G014400 chr5D 97.544 285 7 0 2547 2831 69330744 69330460 3.280000e-134 488.0
17 TraesCS3A01G014400 chr5D 94.137 307 17 1 30 335 520897108 520896802 1.540000e-127 466.0
18 TraesCS3A01G014400 chr5D 83.746 283 25 9 2113 2380 550958582 550958858 6.060000e-62 248.0
19 TraesCS3A01G014400 chr5D 98.182 55 1 0 686 740 520990326 520990272 2.320000e-16 97.1
20 TraesCS3A01G014400 chr5D 82.353 102 11 6 2423 2521 550958978 550959075 6.500000e-12 82.4
21 TraesCS3A01G014400 chr5A 94.566 865 36 8 1207 2061 546828312 546829175 0.000000e+00 1327.0
22 TraesCS3A01G014400 chr5A 88.235 493 31 3 744 1211 546827785 546828275 5.290000e-157 564.0
23 TraesCS3A01G014400 chr5A 96.853 286 9 0 2546 2831 666321655 666321940 1.970000e-131 479.0
24 TraesCS3A01G014400 chr5A 89.459 370 27 6 2182 2549 546829210 546829569 9.240000e-125 457.0
25 TraesCS3A01G014400 chr5A 84.737 190 19 5 2182 2371 24137323 24137144 6.230000e-42 182.0
26 TraesCS3A01G014400 chr5A 96.552 58 2 0 683 740 546833694 546833637 2.320000e-16 97.1
27 TraesCS3A01G014400 chr5A 86.207 58 5 2 334 388 435799819 435799876 3.050000e-05 60.2
28 TraesCS3A01G014400 chr7B 94.151 872 42 6 1207 2069 590255625 590256496 0.000000e+00 1319.0
29 TraesCS3A01G014400 chr7B 92.735 468 32 2 744 1211 73143872 73144337 0.000000e+00 675.0
30 TraesCS3A01G014400 chr7B 87.588 427 28 3 785 1211 590255187 590255588 3.300000e-129 472.0
31 TraesCS3A01G014400 chr1D 94.151 872 32 6 1207 2069 310818743 310819604 0.000000e+00 1310.0
32 TraesCS3A01G014400 chr1D 91.966 473 38 0 739 1211 310818193 310818665 0.000000e+00 664.0
33 TraesCS3A01G014400 chr1D 93.274 446 23 3 1208 1649 404202494 404202936 0.000000e+00 651.0
34 TraesCS3A01G014400 chr1D 93.548 310 20 0 30 339 390369465 390369156 1.990000e-126 462.0
35 TraesCS3A01G014400 chr1D 95.455 220 9 1 335 554 297198763 297198981 1.610000e-92 350.0
36 TraesCS3A01G014400 chr1D 98.182 55 1 0 686 740 33571794 33571740 2.320000e-16 97.1
37 TraesCS3A01G014400 chr1D 98.182 55 1 0 686 740 404201982 404202036 2.320000e-16 97.1
38 TraesCS3A01G014400 chr1D 85.393 89 7 3 2113 2196 493964362 493964449 1.400000e-13 87.9
39 TraesCS3A01G014400 chr6B 93.615 877 49 5 1207 2078 213572769 213571895 0.000000e+00 1303.0
40 TraesCS3A01G014400 chr6B 90.909 473 42 1 739 1211 213573318 213572847 3.980000e-178 634.0
41 TraesCS3A01G014400 chr6B 82.632 190 17 9 2182 2371 557096903 557096730 1.360000e-33 154.0
42 TraesCS3A01G014400 chr3D 96.561 785 21 2 1207 1988 520185097 520184316 0.000000e+00 1295.0
43 TraesCS3A01G014400 chr3D 94.212 311 18 0 29 339 559081079 559080769 2.550000e-130 475.0
44 TraesCS3A01G014400 chr3D 86.305 387 31 6 841 1211 520185555 520185175 4.390000e-108 401.0
45 TraesCS3A01G014400 chr3D 98.876 89 0 1 2009 2097 520184321 520184234 1.050000e-34 158.0
46 TraesCS3A01G014400 chr3D 98.182 55 1 0 686 740 520185688 520185634 2.320000e-16 97.1
47 TraesCS3A01G014400 chr3D 98.182 55 1 0 686 740 584753797 584753743 2.320000e-16 97.1
48 TraesCS3A01G014400 chr3D 93.651 63 4 0 2113 2175 104759050 104758988 8.350000e-16 95.3
49 TraesCS3A01G014400 chr6A 93.831 697 28 6 1207 1894 588048957 588049647 0.000000e+00 1035.0
50 TraesCS3A01G014400 chr6A 92.735 468 33 1 744 1211 588048413 588048879 0.000000e+00 675.0
51 TraesCS3A01G014400 chr6A 90.496 242 8 3 335 561 315827332 315827091 3.540000e-79 305.0
52 TraesCS3A01G014400 chr6A 92.000 125 7 3 1950 2074 588049650 588049771 3.750000e-39 172.0
53 TraesCS3A01G014400 chrUn 96.853 286 9 0 2546 2831 429091363 429091648 1.970000e-131 479.0
54 TraesCS3A01G014400 chrUn 93.811 307 19 0 30 336 88025754 88026060 1.990000e-126 462.0
55 TraesCS3A01G014400 chrUn 93.811 307 19 0 30 336 88028704 88029010 1.990000e-126 462.0
56 TraesCS3A01G014400 chrUn 82.143 196 23 7 2182 2371 314633629 314633818 1.050000e-34 158.0
57 TraesCS3A01G014400 chr7A 96.853 286 9 0 2546 2831 345267630 345267915 1.970000e-131 479.0
58 TraesCS3A01G014400 chr7A 94.481 308 17 0 30 337 700395500 700395193 2.550000e-130 475.0
59 TraesCS3A01G014400 chr7A 100.000 43 0 0 2479 2521 97412362 97412404 2.340000e-11 80.5
60 TraesCS3A01G014400 chr4A 96.853 286 9 0 2546 2831 705554634 705554349 1.970000e-131 479.0
61 TraesCS3A01G014400 chr1B 96.853 286 9 0 2546 2831 30536187 30536472 1.970000e-131 479.0
62 TraesCS3A01G014400 chr1B 85.067 375 27 7 2182 2549 570221295 570221647 3.470000e-94 355.0
63 TraesCS3A01G014400 chr1B 84.800 375 28 9 2182 2549 570181701 570182053 1.610000e-92 350.0
64 TraesCS3A01G014400 chr1A 96.853 286 9 0 2546 2831 113886206 113886491 1.970000e-131 479.0
65 TraesCS3A01G014400 chr4B 93.016 315 20 2 30 344 92021764 92021452 2.570000e-125 459.0
66 TraesCS3A01G014400 chr4B 87.540 313 19 4 2247 2552 643291574 643291275 7.510000e-91 344.0
67 TraesCS3A01G014400 chr4B 92.308 65 5 0 2300 2364 608951984 608951920 3.000000e-15 93.5
68 TraesCS3A01G014400 chr2B 83.795 469 46 13 740 1181 26172021 26171556 4.360000e-113 418.0
69 TraesCS3A01G014400 chr2B 96.610 59 1 1 683 740 476716184 476716242 2.320000e-16 97.1
70 TraesCS3A01G014400 chr2D 80.297 269 36 12 2114 2380 318424066 318423813 1.340000e-43 187.0
71 TraesCS3A01G014400 chr2D 84.956 113 9 5 335 440 346432509 346432398 1.070000e-19 108.0
72 TraesCS3A01G014400 chr2D 96.610 59 1 1 683 740 528104007 528104065 2.320000e-16 97.1
73 TraesCS3A01G014400 chr2D 100.000 42 0 0 2479 2520 129785905 129785864 8.410000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G014400 chr3A 9963436 9966266 2830 False 5228.000000 5228 100.000000 1 2831 1 chr3A.!!$F1 2830
1 TraesCS3A01G014400 chr7D 12036300 12037822 1522 True 1030.500000 1471 91.550500 739 2196 2 chr7D.!!$R3 1457
2 TraesCS3A01G014400 chr7D 531106195 531109933 3738 False 616.825000 1321 93.770750 681 2831 4 chr7D.!!$F4 2150
3 TraesCS3A01G014400 chr5D 69344819 69346186 1367 True 1024.500000 1406 93.837000 744 2074 2 chr5D.!!$R3 1330
4 TraesCS3A01G014400 chr5D 520988915 520990326 1411 True 657.550000 1218 96.483000 686 1988 2 chr5D.!!$R4 1302
5 TraesCS3A01G014400 chr5A 546827785 546829569 1784 False 782.666667 1327 90.753333 744 2549 3 chr5A.!!$F3 1805
6 TraesCS3A01G014400 chr7B 590255187 590256496 1309 False 895.500000 1319 90.869500 785 2069 2 chr7B.!!$F2 1284
7 TraesCS3A01G014400 chr1D 310818193 310819604 1411 False 987.000000 1310 93.058500 739 2069 2 chr1D.!!$F3 1330
8 TraesCS3A01G014400 chr1D 404201982 404202936 954 False 374.050000 651 95.728000 686 1649 2 chr1D.!!$F4 963
9 TraesCS3A01G014400 chr6B 213571895 213573318 1423 True 968.500000 1303 92.262000 739 2078 2 chr6B.!!$R2 1339
10 TraesCS3A01G014400 chr3D 520184234 520185688 1454 True 487.775000 1295 94.981000 686 2097 4 chr3D.!!$R4 1411
11 TraesCS3A01G014400 chr6A 588048413 588049771 1358 False 627.333333 1035 92.855333 744 2074 3 chr6A.!!$F1 1330
12 TraesCS3A01G014400 chrUn 88025754 88029010 3256 False 462.000000 462 93.811000 30 336 2 chrUn.!!$F3 306

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 1518 0.03496 CTCCTCTCTGTCCACTCCGA 60.035 60.0 0.0 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2346 4740 1.66658 CATGTTGTGCCCATGTGCA 59.333 52.632 0.0 0.0 39.37 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 8.584157 AGACCACTATGAAAAATACATTTTGCA 58.416 29.630 9.91 9.91 46.26 4.08
103 104 7.484993 TCTATACAAGGCCACTAACAGTAAA 57.515 36.000 5.01 0.00 0.00 2.01
104 105 8.086143 TCTATACAAGGCCACTAACAGTAAAT 57.914 34.615 5.01 0.00 0.00 1.40
130 131 9.558396 TGAGGCAAAATTTAATGATGTTTTCTT 57.442 25.926 0.00 0.00 0.00 2.52
161 162 5.443170 GCAACTTGTTTAATACTTGCATGCG 60.443 40.000 14.09 1.59 35.23 4.73
199 200 6.951971 ACACTATGCTACTTCCTTCTCATTT 58.048 36.000 0.00 0.00 0.00 2.32
227 228 0.166597 CATGCATGCGGGCGTATTAG 59.833 55.000 14.93 0.00 36.28 1.73
233 234 1.037493 TGCGGGCGTATTAGTGATCT 58.963 50.000 0.00 0.00 0.00 2.75
244 245 7.043325 GGCGTATTAGTGATCTCAGTTAACAAG 60.043 40.741 8.61 5.08 0.00 3.16
255 256 9.657121 GATCTCAGTTAACAAGAAGAAAAGTTG 57.343 33.333 8.61 0.00 0.00 3.16
256 257 7.985476 TCTCAGTTAACAAGAAGAAAAGTTGG 58.015 34.615 8.61 0.00 0.00 3.77
258 259 6.151985 TCAGTTAACAAGAAGAAAAGTTGGCA 59.848 34.615 8.61 0.00 0.00 4.92
260 261 6.980397 AGTTAACAAGAAGAAAAGTTGGCATG 59.020 34.615 8.61 0.00 0.00 4.06
261 262 5.343307 AACAAGAAGAAAAGTTGGCATGT 57.657 34.783 0.00 0.00 0.00 3.21
270 271 8.685838 AAGAAAAGTTGGCATGTAAAGTAGTA 57.314 30.769 0.00 0.00 0.00 1.82
320 321 6.716934 TTTGAGTTTGTGGCCTTGTATAAA 57.283 33.333 3.32 0.00 0.00 1.40
336 337 6.742559 TGTATAAAGGAATGGAGGGAGTAC 57.257 41.667 0.00 0.00 0.00 2.73
337 338 6.449956 TGTATAAAGGAATGGAGGGAGTACT 58.550 40.000 0.00 0.00 0.00 2.73
338 339 7.598248 TGTATAAAGGAATGGAGGGAGTACTA 58.402 38.462 0.00 0.00 0.00 1.82
340 341 9.102453 GTATAAAGGAATGGAGGGAGTACTAAT 57.898 37.037 0.00 0.00 0.00 1.73
342 343 9.684702 ATAAAGGAATGGAGGGAGTACTAATAA 57.315 33.333 0.00 0.00 0.00 1.40
343 344 8.401955 AAAGGAATGGAGGGAGTACTAATAAA 57.598 34.615 0.00 0.00 0.00 1.40
344 345 8.401955 AAGGAATGGAGGGAGTACTAATAAAA 57.598 34.615 0.00 0.00 0.00 1.52
345 346 8.035448 AGGAATGGAGGGAGTACTAATAAAAG 57.965 38.462 0.00 0.00 0.00 2.27
346 347 7.072581 AGGAATGGAGGGAGTACTAATAAAAGG 59.927 40.741 0.00 0.00 0.00 3.11
347 348 6.765355 ATGGAGGGAGTACTAATAAAAGGG 57.235 41.667 0.00 0.00 0.00 3.95
348 349 4.411212 TGGAGGGAGTACTAATAAAAGGGC 59.589 45.833 0.00 0.00 0.00 5.19
349 350 4.659368 GGAGGGAGTACTAATAAAAGGGCT 59.341 45.833 0.00 0.00 0.00 5.19
351 352 6.501102 GGAGGGAGTACTAATAAAAGGGCTAT 59.499 42.308 0.00 0.00 0.00 2.97
353 354 7.746703 AGGGAGTACTAATAAAAGGGCTATTG 58.253 38.462 0.00 0.00 0.00 1.90
354 355 6.430308 GGGAGTACTAATAAAAGGGCTATTGC 59.570 42.308 0.00 0.00 38.76 3.56
355 356 7.225011 GGAGTACTAATAAAAGGGCTATTGCT 58.775 38.462 0.00 0.00 39.59 3.91
356 357 7.720074 GGAGTACTAATAAAAGGGCTATTGCTT 59.280 37.037 0.00 0.00 39.59 3.91
358 359 8.495260 AGTACTAATAAAAGGGCTATTGCTTCT 58.505 33.333 0.00 0.00 39.59 2.85
361 362 9.868160 ACTAATAAAAGGGCTATTGCTTCTTAT 57.132 29.630 0.00 0.00 39.59 1.73
363 364 8.766994 AATAAAAGGGCTATTGCTTCTTATCA 57.233 30.769 0.00 0.00 39.59 2.15
366 367 2.808543 GGGCTATTGCTTCTTATCACCG 59.191 50.000 0.00 0.00 39.59 4.94
367 368 3.467803 GGCTATTGCTTCTTATCACCGT 58.532 45.455 0.00 0.00 39.59 4.83
369 370 5.054477 GGCTATTGCTTCTTATCACCGTAA 58.946 41.667 0.00 0.00 39.59 3.18
371 372 6.204882 GGCTATTGCTTCTTATCACCGTAATT 59.795 38.462 0.00 0.00 39.59 1.40
372 373 7.255139 GGCTATTGCTTCTTATCACCGTAATTT 60.255 37.037 0.00 0.00 39.59 1.82
374 375 9.438291 CTATTGCTTCTTATCACCGTAATTTTG 57.562 33.333 0.00 0.00 0.00 2.44
375 376 6.811253 TGCTTCTTATCACCGTAATTTTGT 57.189 33.333 0.00 0.00 0.00 2.83
376 377 7.209471 TGCTTCTTATCACCGTAATTTTGTT 57.791 32.000 0.00 0.00 0.00 2.83
377 378 7.302524 TGCTTCTTATCACCGTAATTTTGTTC 58.697 34.615 0.00 0.00 0.00 3.18
378 379 6.464834 GCTTCTTATCACCGTAATTTTGTTCG 59.535 38.462 0.00 0.00 0.00 3.95
379 380 7.424227 TTCTTATCACCGTAATTTTGTTCGT 57.576 32.000 0.00 0.00 0.00 3.85
380 381 7.424227 TCTTATCACCGTAATTTTGTTCGTT 57.576 32.000 0.00 0.00 0.00 3.85
381 382 7.863666 TCTTATCACCGTAATTTTGTTCGTTT 58.136 30.769 0.00 0.00 0.00 3.60
382 383 8.344098 TCTTATCACCGTAATTTTGTTCGTTTT 58.656 29.630 0.00 0.00 0.00 2.43
385 386 5.451662 TCACCGTAATTTTGTTCGTTTTTCG 59.548 36.000 0.00 0.00 41.41 3.46
386 387 5.227598 CACCGTAATTTTGTTCGTTTTTCGT 59.772 36.000 0.00 0.00 40.80 3.85
387 388 5.451982 ACCGTAATTTTGTTCGTTTTTCGTC 59.548 36.000 0.00 0.00 40.80 4.20
388 389 5.108668 CCGTAATTTTGTTCGTTTTTCGTCC 60.109 40.000 0.00 0.00 40.80 4.79
389 390 5.384215 CGTAATTTTGTTCGTTTTTCGTCCG 60.384 40.000 0.00 0.00 40.80 4.79
390 391 3.468304 TTTTGTTCGTTTTTCGTCCGT 57.532 38.095 0.00 0.00 40.80 4.69
391 392 2.717524 TTGTTCGTTTTTCGTCCGTC 57.282 45.000 0.00 0.00 40.80 4.79
393 394 0.111574 GTTCGTTTTTCGTCCGTCCG 60.112 55.000 0.00 0.00 40.80 4.79
396 397 0.382151 CGTTTTTCGTCCGTCCGTTG 60.382 55.000 0.00 0.00 34.52 4.10
397 398 0.652071 GTTTTTCGTCCGTCCGTTGT 59.348 50.000 0.00 0.00 0.00 3.32
398 399 0.929615 TTTTTCGTCCGTCCGTTGTC 59.070 50.000 0.00 0.00 0.00 3.18
400 401 3.541093 TTCGTCCGTCCGTTGTCCG 62.541 63.158 0.00 0.00 0.00 4.79
402 403 2.429739 GTCCGTCCGTTGTCCGTC 60.430 66.667 0.00 0.00 33.66 4.79
403 404 2.595463 TCCGTCCGTTGTCCGTCT 60.595 61.111 0.00 0.00 33.66 4.18
404 405 1.302431 TCCGTCCGTTGTCCGTCTA 60.302 57.895 0.00 0.00 33.66 2.59
405 406 0.677731 TCCGTCCGTTGTCCGTCTAT 60.678 55.000 0.00 0.00 33.66 1.98
407 408 1.605710 CCGTCCGTTGTCCGTCTATAT 59.394 52.381 0.00 0.00 33.66 0.86
410 411 4.083110 CCGTCCGTTGTCCGTCTATATTAT 60.083 45.833 0.00 0.00 33.66 1.28
411 412 5.455392 CGTCCGTTGTCCGTCTATATTATT 58.545 41.667 0.00 0.00 33.66 1.40
412 413 5.916883 CGTCCGTTGTCCGTCTATATTATTT 59.083 40.000 0.00 0.00 33.66 1.40
413 414 6.418819 CGTCCGTTGTCCGTCTATATTATTTT 59.581 38.462 0.00 0.00 33.66 1.82
434 435 5.796424 TTTTCTATATCCGAGGTGGTACC 57.204 43.478 4.43 4.43 39.52 3.34
435 436 4.458256 TTCTATATCCGAGGTGGTACCA 57.542 45.455 11.60 11.60 41.95 3.25
436 437 4.458256 TCTATATCCGAGGTGGTACCAA 57.542 45.455 18.31 0.00 41.95 3.67
437 438 5.006896 TCTATATCCGAGGTGGTACCAAT 57.993 43.478 18.31 8.57 41.95 3.16
438 439 5.014858 TCTATATCCGAGGTGGTACCAATC 58.985 45.833 18.31 16.55 41.95 2.67
439 440 2.176247 ATCCGAGGTGGTACCAATCT 57.824 50.000 18.31 17.10 41.95 2.40
441 442 3.104519 TCCGAGGTGGTACCAATCTTA 57.895 47.619 18.31 5.88 41.95 2.10
443 444 3.386726 TCCGAGGTGGTACCAATCTTATG 59.613 47.826 18.31 10.74 41.95 1.90
444 445 3.131396 CGAGGTGGTACCAATCTTATGC 58.869 50.000 18.31 0.66 41.95 3.14
446 447 3.123273 AGGTGGTACCAATCTTATGCCT 58.877 45.455 18.31 13.36 41.95 4.75
447 448 3.527665 AGGTGGTACCAATCTTATGCCTT 59.472 43.478 18.31 0.00 41.95 4.35
448 449 4.017499 AGGTGGTACCAATCTTATGCCTTT 60.017 41.667 18.31 0.00 41.95 3.11
449 450 5.192923 AGGTGGTACCAATCTTATGCCTTTA 59.807 40.000 18.31 0.00 41.95 1.85
450 451 6.068670 GGTGGTACCAATCTTATGCCTTTAT 58.931 40.000 18.31 0.00 38.42 1.40
451 452 6.549736 GGTGGTACCAATCTTATGCCTTTATT 59.450 38.462 18.31 0.00 38.42 1.40
452 453 7.069455 GGTGGTACCAATCTTATGCCTTTATTT 59.931 37.037 18.31 0.00 38.42 1.40
453 454 8.474831 GTGGTACCAATCTTATGCCTTTATTTT 58.525 33.333 18.31 0.00 0.00 1.82
456 457 9.869757 GTACCAATCTTATGCCTTTATTTTTGT 57.130 29.630 0.00 0.00 0.00 2.83
458 459 9.435688 ACCAATCTTATGCCTTTATTTTTGTTC 57.564 29.630 0.00 0.00 0.00 3.18
459 460 8.594687 CCAATCTTATGCCTTTATTTTTGTTCG 58.405 33.333 0.00 0.00 0.00 3.95
461 462 8.911247 ATCTTATGCCTTTATTTTTGTTCGTC 57.089 30.769 0.00 0.00 0.00 4.20
463 464 3.891324 TGCCTTTATTTTTGTTCGTCCG 58.109 40.909 0.00 0.00 0.00 4.79
468 469 0.659123 ATTTTTGTTCGTCCGTGCGC 60.659 50.000 0.00 0.00 0.00 6.09
469 470 2.649843 TTTTTGTTCGTCCGTGCGCC 62.650 55.000 4.18 0.00 0.00 6.53
470 471 4.893601 TTGTTCGTCCGTGCGCCA 62.894 61.111 4.18 0.00 0.00 5.69
475 476 4.111016 CGTCCGTGCGCCAGTCTA 62.111 66.667 4.18 0.00 0.00 2.59
476 477 2.202623 GTCCGTGCGCCAGTCTAG 60.203 66.667 4.18 0.00 0.00 2.43
488 489 4.160736 GCCAGTCTAGCGAAAATTTTGT 57.839 40.909 8.47 0.00 0.00 2.83
491 492 5.324697 CCAGTCTAGCGAAAATTTTGTAGC 58.675 41.667 8.47 10.80 0.00 3.58
493 494 4.395231 AGTCTAGCGAAAATTTTGTAGCCC 59.605 41.667 8.47 1.91 0.00 5.19
494 495 4.395231 GTCTAGCGAAAATTTTGTAGCCCT 59.605 41.667 8.47 0.00 0.00 5.19
496 497 4.174411 AGCGAAAATTTTGTAGCCCTTC 57.826 40.909 8.47 0.00 0.00 3.46
497 498 2.914838 GCGAAAATTTTGTAGCCCTTCG 59.085 45.455 8.47 3.51 37.75 3.79
498 499 3.610821 GCGAAAATTTTGTAGCCCTTCGT 60.611 43.478 8.47 0.00 37.20 3.85
500 501 5.691815 CGAAAATTTTGTAGCCCTTCGTAA 58.308 37.500 8.47 0.00 31.90 3.18
503 504 5.874895 AATTTTGTAGCCCTTCGTAACTC 57.125 39.130 0.00 0.00 0.00 3.01
504 505 4.339872 TTTTGTAGCCCTTCGTAACTCA 57.660 40.909 0.00 0.00 0.00 3.41
505 506 3.308438 TTGTAGCCCTTCGTAACTCAC 57.692 47.619 0.00 0.00 0.00 3.51
506 507 1.547372 TGTAGCCCTTCGTAACTCACC 59.453 52.381 0.00 0.00 0.00 4.02
508 509 1.349067 AGCCCTTCGTAACTCACCTT 58.651 50.000 0.00 0.00 0.00 3.50
509 510 1.697982 AGCCCTTCGTAACTCACCTTT 59.302 47.619 0.00 0.00 0.00 3.11
510 511 1.804748 GCCCTTCGTAACTCACCTTTG 59.195 52.381 0.00 0.00 0.00 2.77
511 512 2.423577 CCCTTCGTAACTCACCTTTGG 58.576 52.381 0.00 0.00 0.00 3.28
512 513 2.423577 CCTTCGTAACTCACCTTTGGG 58.576 52.381 0.00 0.00 38.88 4.12
513 514 1.804748 CTTCGTAACTCACCTTTGGGC 59.195 52.381 0.00 0.00 35.63 5.36
514 515 0.035739 TCGTAACTCACCTTTGGGCC 59.964 55.000 0.00 0.00 35.63 5.80
515 516 0.250553 CGTAACTCACCTTTGGGCCA 60.251 55.000 0.00 0.00 35.63 5.36
516 517 1.534729 GTAACTCACCTTTGGGCCAG 58.465 55.000 6.23 0.00 35.63 4.85
517 518 1.073284 GTAACTCACCTTTGGGCCAGA 59.927 52.381 6.23 0.00 35.63 3.86
518 519 0.555769 AACTCACCTTTGGGCCAGAA 59.444 50.000 6.23 3.61 35.63 3.02
519 520 0.779997 ACTCACCTTTGGGCCAGAAT 59.220 50.000 6.23 0.00 35.63 2.40
520 521 1.147817 ACTCACCTTTGGGCCAGAATT 59.852 47.619 6.23 0.00 35.63 2.17
521 522 2.250924 CTCACCTTTGGGCCAGAATTT 58.749 47.619 6.23 0.00 35.63 1.82
522 523 2.232208 CTCACCTTTGGGCCAGAATTTC 59.768 50.000 6.23 0.00 35.63 2.17
523 524 2.158325 TCACCTTTGGGCCAGAATTTCT 60.158 45.455 6.23 0.00 35.63 2.52
524 525 2.028748 CACCTTTGGGCCAGAATTTCTG 60.029 50.000 17.78 17.78 38.93 3.02
525 526 2.250924 CCTTTGGGCCAGAATTTCTGT 58.749 47.619 21.75 0.00 42.80 3.41
526 527 2.634453 CCTTTGGGCCAGAATTTCTGTT 59.366 45.455 21.75 0.00 42.80 3.16
527 528 3.831911 CCTTTGGGCCAGAATTTCTGTTA 59.168 43.478 21.75 5.62 42.80 2.41
528 529 4.321974 CCTTTGGGCCAGAATTTCTGTTAC 60.322 45.833 21.75 12.38 42.80 2.50
529 530 3.806949 TGGGCCAGAATTTCTGTTACT 57.193 42.857 21.75 0.00 42.80 2.24
530 531 4.112634 TGGGCCAGAATTTCTGTTACTT 57.887 40.909 21.75 0.00 42.80 2.24
531 532 3.826157 TGGGCCAGAATTTCTGTTACTTG 59.174 43.478 21.75 9.06 42.80 3.16
532 533 3.193479 GGGCCAGAATTTCTGTTACTTGG 59.807 47.826 21.75 9.32 42.80 3.61
533 534 3.193479 GGCCAGAATTTCTGTTACTTGGG 59.807 47.826 21.75 7.93 42.80 4.12
534 535 3.367395 GCCAGAATTTCTGTTACTTGGGC 60.367 47.826 21.75 13.23 42.80 5.36
535 536 3.193479 CCAGAATTTCTGTTACTTGGGCC 59.807 47.826 21.75 0.00 42.80 5.80
536 537 3.826157 CAGAATTTCTGTTACTTGGGCCA 59.174 43.478 16.71 0.00 39.58 5.36
537 538 3.826729 AGAATTTCTGTTACTTGGGCCAC 59.173 43.478 5.23 0.00 0.00 5.01
538 539 1.989706 TTTCTGTTACTTGGGCCACC 58.010 50.000 5.23 0.00 37.24 4.61
539 540 1.145571 TTCTGTTACTTGGGCCACCT 58.854 50.000 5.23 0.00 37.76 4.00
540 541 2.032965 TCTGTTACTTGGGCCACCTA 57.967 50.000 5.23 0.00 37.76 3.08
541 542 2.340731 TCTGTTACTTGGGCCACCTAA 58.659 47.619 5.23 1.25 37.76 2.69
542 543 2.916934 TCTGTTACTTGGGCCACCTAAT 59.083 45.455 5.23 0.00 37.76 1.73
543 544 4.105577 TCTGTTACTTGGGCCACCTAATA 58.894 43.478 5.23 2.13 37.76 0.98
544 545 4.536888 TCTGTTACTTGGGCCACCTAATAA 59.463 41.667 5.23 0.00 37.76 1.40
545 546 5.014333 TCTGTTACTTGGGCCACCTAATAAA 59.986 40.000 5.23 0.00 37.76 1.40
546 547 5.833340 TGTTACTTGGGCCACCTAATAAAT 58.167 37.500 5.23 0.00 37.76 1.40
547 548 6.257586 TGTTACTTGGGCCACCTAATAAATT 58.742 36.000 5.23 0.00 37.76 1.82
548 549 6.153680 TGTTACTTGGGCCACCTAATAAATTG 59.846 38.462 5.23 0.00 37.76 2.32
549 550 3.450817 ACTTGGGCCACCTAATAAATTGC 59.549 43.478 5.23 0.00 37.76 3.56
550 551 3.396685 TGGGCCACCTAATAAATTGCT 57.603 42.857 0.00 0.00 37.76 3.91
551 552 3.718723 TGGGCCACCTAATAAATTGCTT 58.281 40.909 0.00 0.00 37.76 3.91
552 553 3.704061 TGGGCCACCTAATAAATTGCTTC 59.296 43.478 0.00 0.00 37.76 3.86
553 554 3.704061 GGGCCACCTAATAAATTGCTTCA 59.296 43.478 4.39 0.00 0.00 3.02
554 555 4.441495 GGGCCACCTAATAAATTGCTTCAC 60.441 45.833 4.39 0.00 0.00 3.18
555 556 4.159506 GGCCACCTAATAAATTGCTTCACA 59.840 41.667 0.00 0.00 0.00 3.58
556 557 5.337169 GGCCACCTAATAAATTGCTTCACAA 60.337 40.000 0.00 0.00 44.01 3.33
557 558 6.162777 GCCACCTAATAAATTGCTTCACAAA 58.837 36.000 0.00 0.00 42.86 2.83
558 559 6.818142 GCCACCTAATAAATTGCTTCACAAAT 59.182 34.615 0.00 0.00 42.86 2.32
559 560 7.978975 GCCACCTAATAAATTGCTTCACAAATA 59.021 33.333 0.00 0.00 42.86 1.40
560 561 9.520204 CCACCTAATAAATTGCTTCACAAATAG 57.480 33.333 0.00 0.00 42.86 1.73
561 562 9.023967 CACCTAATAAATTGCTTCACAAATAGC 57.976 33.333 0.00 0.00 42.86 2.97
562 563 8.197439 ACCTAATAAATTGCTTCACAAATAGCC 58.803 33.333 0.00 0.00 42.86 3.93
563 564 8.196771 CCTAATAAATTGCTTCACAAATAGCCA 58.803 33.333 0.00 0.00 42.86 4.75
564 565 9.241317 CTAATAAATTGCTTCACAAATAGCCAG 57.759 33.333 0.00 0.00 42.86 4.85
565 566 5.726980 AAATTGCTTCACAAATAGCCAGA 57.273 34.783 0.00 0.00 42.86 3.86
566 567 4.708726 ATTGCTTCACAAATAGCCAGAC 57.291 40.909 0.00 0.00 42.86 3.51
567 568 3.138884 TGCTTCACAAATAGCCAGACA 57.861 42.857 0.00 0.00 36.56 3.41
568 569 3.689347 TGCTTCACAAATAGCCAGACAT 58.311 40.909 0.00 0.00 36.56 3.06
569 570 4.081406 TGCTTCACAAATAGCCAGACATT 58.919 39.130 0.00 0.00 36.56 2.71
570 571 5.252547 TGCTTCACAAATAGCCAGACATTA 58.747 37.500 0.00 0.00 36.56 1.90
571 572 5.887598 TGCTTCACAAATAGCCAGACATTAT 59.112 36.000 0.00 0.00 36.56 1.28
572 573 6.377996 TGCTTCACAAATAGCCAGACATTATT 59.622 34.615 0.00 0.00 36.56 1.40
573 574 7.093814 TGCTTCACAAATAGCCAGACATTATTT 60.094 33.333 0.00 0.00 36.56 1.40
574 575 7.221452 GCTTCACAAATAGCCAGACATTATTTG 59.779 37.037 12.24 12.24 44.45 2.32
580 581 9.683069 CAAATAGCCAGACATTATTTGTATTCC 57.317 33.333 7.63 0.00 39.18 3.01
581 582 7.672983 ATAGCCAGACATTATTTGTATTCCG 57.327 36.000 0.00 0.00 39.18 4.30
582 583 5.437060 AGCCAGACATTATTTGTATTCCGT 58.563 37.500 0.00 0.00 39.18 4.69
583 584 5.885912 AGCCAGACATTATTTGTATTCCGTT 59.114 36.000 0.00 0.00 39.18 4.44
584 585 6.377146 AGCCAGACATTATTTGTATTCCGTTT 59.623 34.615 0.00 0.00 39.18 3.60
585 586 7.554835 AGCCAGACATTATTTGTATTCCGTTTA 59.445 33.333 0.00 0.00 39.18 2.01
586 587 7.642586 GCCAGACATTATTTGTATTCCGTTTAC 59.357 37.037 0.00 0.00 39.18 2.01
587 588 8.889717 CCAGACATTATTTGTATTCCGTTTACT 58.110 33.333 0.00 0.00 39.18 2.24
617 618 8.712103 ACTCCTTAATAAAGTCCATAGTTACCC 58.288 37.037 0.00 0.00 0.00 3.69
618 619 7.729116 TCCTTAATAAAGTCCATAGTTACCCG 58.271 38.462 0.00 0.00 0.00 5.28
619 620 7.345392 TCCTTAATAAAGTCCATAGTTACCCGT 59.655 37.037 0.00 0.00 0.00 5.28
620 621 7.654923 CCTTAATAAAGTCCATAGTTACCCGTC 59.345 40.741 0.00 0.00 0.00 4.79
621 622 6.549433 AATAAAGTCCATAGTTACCCGTCA 57.451 37.500 0.00 0.00 0.00 4.35
625 626 5.231702 AGTCCATAGTTACCCGTCAAAAA 57.768 39.130 0.00 0.00 0.00 1.94
654 655 7.396540 AAAAGGAGAAGTGCATATGTTAAGG 57.603 36.000 4.29 0.00 0.00 2.69
655 656 4.455606 AGGAGAAGTGCATATGTTAAGGC 58.544 43.478 4.29 0.00 0.00 4.35
656 657 3.565902 GGAGAAGTGCATATGTTAAGGCC 59.434 47.826 4.29 0.00 0.00 5.19
657 658 3.206150 AGAAGTGCATATGTTAAGGCCG 58.794 45.455 4.29 0.00 0.00 6.13
658 659 2.710096 AGTGCATATGTTAAGGCCGT 57.290 45.000 4.29 0.00 0.00 5.68
659 660 2.561569 AGTGCATATGTTAAGGCCGTC 58.438 47.619 4.29 0.00 0.00 4.79
660 661 1.602377 GTGCATATGTTAAGGCCGTCC 59.398 52.381 4.29 0.00 0.00 4.79
661 662 0.865769 GCATATGTTAAGGCCGTCCG 59.134 55.000 4.29 0.00 37.47 4.79
662 663 0.865769 CATATGTTAAGGCCGTCCGC 59.134 55.000 0.00 0.00 37.47 5.54
663 664 0.466543 ATATGTTAAGGCCGTCCGCA 59.533 50.000 0.00 0.00 40.31 5.69
664 665 0.460635 TATGTTAAGGCCGTCCGCAC 60.461 55.000 0.00 0.00 40.31 5.34
666 667 3.627952 TTAAGGCCGTCCGCACCA 61.628 61.111 0.00 0.00 40.31 4.17
667 668 3.179888 TTAAGGCCGTCCGCACCAA 62.180 57.895 0.00 0.00 40.31 3.67
668 669 3.599285 TAAGGCCGTCCGCACCAAG 62.599 63.158 0.00 0.00 40.31 3.61
675 676 1.733399 GTCCGCACCAAGACGACTC 60.733 63.158 0.00 0.00 0.00 3.36
676 677 2.805353 CCGCACCAAGACGACTCG 60.805 66.667 0.00 0.00 0.00 4.18
677 678 2.805353 CGCACCAAGACGACTCGG 60.805 66.667 2.98 0.00 0.00 4.63
678 679 2.338984 GCACCAAGACGACTCGGT 59.661 61.111 2.98 0.00 33.11 4.69
679 680 4.245054 CACCAAGACGACTCGGTG 57.755 61.111 10.53 10.53 43.46 4.94
683 684 0.596577 CCAAGACGACTCGGTGAGAA 59.403 55.000 2.98 0.00 33.32 2.87
729 1108 4.293901 ACATAAACTTGTAGGGGTGGGAAT 59.706 41.667 0.00 0.00 0.00 3.01
824 1408 3.767131 GGTAATTTTGCAGAAAGGCCCTA 59.233 43.478 0.00 0.00 0.00 3.53
827 1411 2.373335 TTTGCAGAAAGGCCCTACAA 57.627 45.000 0.00 0.00 0.00 2.41
909 1493 2.043450 CCCCGAGCTCCTCTCTGT 60.043 66.667 8.47 0.00 39.70 3.41
918 1518 0.034960 CTCCTCTCTGTCCACTCCGA 60.035 60.000 0.00 0.00 0.00 4.55
1261 2794 6.530019 ACTTTCTGAAGATGTTTTGGTTGT 57.470 33.333 0.00 0.00 36.69 3.32
1338 2881 4.081406 TCCTCCCATGATGTTGTTTTCAG 58.919 43.478 0.00 0.00 0.00 3.02
1659 3958 5.218139 GTGGCTCTTCAGAAATTTGTCTTG 58.782 41.667 0.00 0.00 0.00 3.02
1860 4159 7.981225 AGGTAATTTTGTATTTGGCATGATGTC 59.019 33.333 0.00 0.00 0.00 3.06
1974 4273 3.304928 CCAAACTGTTTGATGTGAGAGGC 60.305 47.826 29.47 0.00 43.26 4.70
1990 4289 2.609459 AGAGGCGAAATCATTTGCTACG 59.391 45.455 0.00 0.00 44.14 3.51
2150 4544 9.659830 AGTTAACTTAACTGTAAGCAAAATTCG 57.340 29.630 12.55 0.00 46.58 3.34
2201 4595 8.628882 ACAGTGCAAATTTTAGTTAACTGAAC 57.371 30.769 18.56 5.16 37.73 3.18
2219 4613 7.516198 ACTGAACTGTAAGCAAAATTCAGAT 57.484 32.000 16.41 1.38 39.26 2.90
2221 4615 7.229306 ACTGAACTGTAAGCAAAATTCAGATGA 59.771 33.333 16.41 0.00 39.26 2.92
2223 4617 8.077991 TGAACTGTAAGCAAAATTCAGATGAAG 58.922 33.333 1.32 0.00 37.60 3.02
2226 4620 6.747125 TGTAAGCAAAATTCAGATGAAGCAA 58.253 32.000 1.32 0.00 37.48 3.91
2229 4623 7.739498 AAGCAAAATTCAGATGAAGCAAAAT 57.261 28.000 1.32 0.00 37.48 1.82
2230 4624 7.739498 AGCAAAATTCAGATGAAGCAAAATT 57.261 28.000 1.32 0.00 37.48 1.82
2231 4625 7.803724 AGCAAAATTCAGATGAAGCAAAATTC 58.196 30.769 1.32 0.00 37.48 2.17
2232 4626 7.442969 AGCAAAATTCAGATGAAGCAAAATTCA 59.557 29.630 1.32 0.00 43.04 2.57
2233 4627 7.744715 GCAAAATTCAGATGAAGCAAAATTCAG 59.255 33.333 1.32 0.00 42.20 3.02
2234 4628 8.770828 CAAAATTCAGATGAAGCAAAATTCAGT 58.229 29.630 1.32 0.00 42.20 3.41
2236 4630 9.985730 AAATTCAGATGAAGCAAAATTCAGTTA 57.014 25.926 1.32 0.00 42.20 2.24
2237 4631 9.985730 AATTCAGATGAAGCAAAATTCAGTTAA 57.014 25.926 1.32 0.00 42.20 2.01
2238 4632 8.801715 TTCAGATGAAGCAAAATTCAGTTAAC 57.198 30.769 0.00 0.00 42.20 2.01
2239 4633 8.169977 TCAGATGAAGCAAAATTCAGTTAACT 57.830 30.769 1.12 1.12 42.20 2.24
2242 4636 5.900425 TGAAGCAAAATTCAGTTAACTGCA 58.100 33.333 27.49 19.56 43.46 4.41
2245 4639 7.332926 TGAAGCAAAATTCAGTTAACTGCAAAA 59.667 29.630 27.49 18.22 43.46 2.44
2274 4668 2.368878 GGGGCCCAGGGATCTTCT 60.369 66.667 26.86 0.00 0.00 2.85
2284 4678 4.030913 CCAGGGATCTTCTGGTAGTACAA 58.969 47.826 20.33 0.00 44.97 2.41
2287 4681 6.051717 CAGGGATCTTCTGGTAGTACAATTG 58.948 44.000 3.24 3.24 0.00 2.32
2346 4740 7.225784 TGGTACATTCTATTTTTGCATGTGT 57.774 32.000 0.00 0.00 30.70 3.72
2410 4804 4.035675 GGCAACATAGATAACAGCAGTTCC 59.964 45.833 0.00 0.00 39.15 3.62
2413 4807 4.433615 ACATAGATAACAGCAGTTCCACG 58.566 43.478 0.00 0.00 39.15 4.94
2415 4809 0.727398 GATAACAGCAGTTCCACGGC 59.273 55.000 0.00 0.00 39.63 5.68
2417 4811 0.179043 TAACAGCAGTTCCACGGCAA 60.179 50.000 0.00 0.00 41.80 4.52
2418 4812 1.034838 AACAGCAGTTCCACGGCAAA 61.035 50.000 1.88 0.00 41.80 3.68
2448 4842 9.739276 TCAAAATAGATAAGACCAGTTCAACAT 57.261 29.630 0.00 0.00 0.00 2.71
2467 4861 8.797350 TCAACATCATCTTCAGTTCAACATAT 57.203 30.769 0.00 0.00 0.00 1.78
2468 4862 8.671028 TCAACATCATCTTCAGTTCAACATATG 58.329 33.333 0.00 0.00 0.00 1.78
2543 6067 2.001159 CAGCTGCAGACATCTTCACTC 58.999 52.381 20.43 0.00 0.00 3.51
2570 6364 2.293677 GCATCCTCATTTCCATCTGCAG 59.706 50.000 7.63 7.63 0.00 4.41
2597 6391 7.397221 TGGGCATCCTTTTAGTATGATATCAG 58.603 38.462 11.78 0.00 0.00 2.90
2638 6432 7.279615 TCTTGTTCTCCTCATCAACTAACAAA 58.720 34.615 0.00 0.00 35.61 2.83
2660 6454 3.063510 CCAATGTCTTGGCTTCTCTGA 57.936 47.619 0.00 0.00 45.28 3.27
2712 6506 0.322456 TTGTCCACACATAGCAGGCC 60.322 55.000 0.00 0.00 30.55 5.19
2731 6525 2.838736 CCATCACCATAGTCTTTCCCG 58.161 52.381 0.00 0.00 0.00 5.14
2736 6530 0.254747 CCATAGTCTTTCCCGGGCAA 59.745 55.000 18.49 11.47 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 8.465971 GGGAATGGAGGGAGTAGGTATATATAT 58.534 40.741 0.00 0.00 0.00 0.86
19 20 7.640415 AGGGAATGGAGGGAGTAGGTATATATA 59.360 40.741 0.00 0.00 0.00 0.86
20 21 6.458674 AGGGAATGGAGGGAGTAGGTATATAT 59.541 42.308 0.00 0.00 0.00 0.86
21 22 5.807086 AGGGAATGGAGGGAGTAGGTATATA 59.193 44.000 0.00 0.00 0.00 0.86
22 23 4.617469 AGGGAATGGAGGGAGTAGGTATAT 59.383 45.833 0.00 0.00 0.00 0.86
23 24 4.002050 AGGGAATGGAGGGAGTAGGTATA 58.998 47.826 0.00 0.00 0.00 1.47
24 25 2.804440 AGGGAATGGAGGGAGTAGGTAT 59.196 50.000 0.00 0.00 0.00 2.73
25 26 2.233178 AGGGAATGGAGGGAGTAGGTA 58.767 52.381 0.00 0.00 0.00 3.08
26 27 1.027815 AGGGAATGGAGGGAGTAGGT 58.972 55.000 0.00 0.00 0.00 3.08
27 28 2.198334 AAGGGAATGGAGGGAGTAGG 57.802 55.000 0.00 0.00 0.00 3.18
28 29 5.403512 TGTATAAGGGAATGGAGGGAGTAG 58.596 45.833 0.00 0.00 0.00 2.57
78 79 7.670605 TTACTGTTAGTGGCCTTGTATAGAT 57.329 36.000 3.32 0.00 0.00 1.98
103 104 9.729281 AGAAAACATCATTAAATTTTGCCTCAT 57.271 25.926 0.00 0.00 0.00 2.90
104 105 9.558396 AAGAAAACATCATTAAATTTTGCCTCA 57.442 25.926 0.00 0.00 0.00 3.86
130 131 8.500773 GCAAGTATTAAACAAGTTGCTACTACA 58.499 33.333 15.67 0.00 44.79 2.74
180 181 6.069731 AGGAAGAAATGAGAAGGAAGTAGCAT 60.070 38.462 0.00 0.00 0.00 3.79
220 221 9.569167 TTCTTGTTAACTGAGATCACTAATACG 57.431 33.333 7.22 0.00 0.00 3.06
227 228 8.831550 ACTTTTCTTCTTGTTAACTGAGATCAC 58.168 33.333 7.22 0.00 0.00 3.06
233 234 6.151985 TGCCAACTTTTCTTCTTGTTAACTGA 59.848 34.615 7.22 2.64 0.00 3.41
244 245 7.649057 ACTACTTTACATGCCAACTTTTCTTC 58.351 34.615 0.00 0.00 0.00 2.87
291 292 5.070313 ACAAGGCCACAAACTCAAATTACAT 59.930 36.000 5.01 0.00 0.00 2.29
320 321 7.072581 CCTTTTATTAGTACTCCCTCCATTCCT 59.927 40.741 0.00 0.00 0.00 3.36
337 338 9.860650 TGATAAGAAGCAATAGCCCTTTTATTA 57.139 29.630 0.00 0.00 43.56 0.98
338 339 8.633561 GTGATAAGAAGCAATAGCCCTTTTATT 58.366 33.333 0.00 0.00 43.56 1.40
340 341 6.546034 GGTGATAAGAAGCAATAGCCCTTTTA 59.454 38.462 0.00 0.00 43.56 1.52
341 342 5.360999 GGTGATAAGAAGCAATAGCCCTTTT 59.639 40.000 0.00 0.00 43.56 2.27
342 343 4.889995 GGTGATAAGAAGCAATAGCCCTTT 59.110 41.667 0.00 0.00 43.56 3.11
343 344 4.464947 GGTGATAAGAAGCAATAGCCCTT 58.535 43.478 0.00 0.00 43.56 3.95
344 345 3.495100 CGGTGATAAGAAGCAATAGCCCT 60.495 47.826 0.00 0.00 43.56 5.19
345 346 2.808543 CGGTGATAAGAAGCAATAGCCC 59.191 50.000 0.00 0.00 43.56 5.19
346 347 3.467803 ACGGTGATAAGAAGCAATAGCC 58.532 45.455 0.00 0.00 43.56 3.93
347 348 6.787085 ATTACGGTGATAAGAAGCAATAGC 57.213 37.500 0.00 0.00 42.56 2.97
348 349 9.438291 CAAAATTACGGTGATAAGAAGCAATAG 57.562 33.333 0.00 0.00 0.00 1.73
349 350 8.952278 ACAAAATTACGGTGATAAGAAGCAATA 58.048 29.630 0.00 0.00 0.00 1.90
351 352 7.209471 ACAAAATTACGGTGATAAGAAGCAA 57.791 32.000 0.00 0.00 0.00 3.91
353 354 6.464834 CGAACAAAATTACGGTGATAAGAAGC 59.535 38.462 0.00 0.00 0.00 3.86
354 355 7.515643 ACGAACAAAATTACGGTGATAAGAAG 58.484 34.615 0.00 0.00 0.00 2.85
355 356 7.424227 ACGAACAAAATTACGGTGATAAGAA 57.576 32.000 0.00 0.00 0.00 2.52
356 357 7.424227 AACGAACAAAATTACGGTGATAAGA 57.576 32.000 0.00 0.00 0.00 2.10
358 359 8.853469 AAAAACGAACAAAATTACGGTGATAA 57.147 26.923 0.00 0.00 0.00 1.75
361 362 5.451662 CGAAAAACGAACAAAATTACGGTGA 59.548 36.000 0.00 0.00 45.77 4.02
363 364 5.331098 ACGAAAAACGAACAAAATTACGGT 58.669 33.333 0.00 0.00 45.77 4.83
366 367 5.451982 ACGGACGAAAAACGAACAAAATTAC 59.548 36.000 0.00 0.00 45.77 1.89
367 368 5.567552 ACGGACGAAAAACGAACAAAATTA 58.432 33.333 0.00 0.00 45.77 1.40
369 370 4.018649 ACGGACGAAAAACGAACAAAAT 57.981 36.364 0.00 0.00 45.77 1.82
371 372 2.222999 GGACGGACGAAAAACGAACAAA 60.223 45.455 0.00 0.00 45.77 2.83
372 373 1.327156 GGACGGACGAAAAACGAACAA 59.673 47.619 0.00 0.00 45.77 2.83
374 375 0.111574 CGGACGGACGAAAAACGAAC 60.112 55.000 0.00 0.00 45.77 3.95
375 376 0.527385 ACGGACGGACGAAAAACGAA 60.527 50.000 8.01 0.00 45.77 3.85
376 377 0.527385 AACGGACGGACGAAAAACGA 60.527 50.000 8.01 0.00 45.77 3.85
378 379 0.652071 ACAACGGACGGACGAAAAAC 59.348 50.000 8.01 0.00 37.61 2.43
379 380 0.929615 GACAACGGACGGACGAAAAA 59.070 50.000 8.01 0.00 37.61 1.94
380 381 0.875474 GGACAACGGACGGACGAAAA 60.875 55.000 8.01 0.00 37.61 2.29
381 382 1.300080 GGACAACGGACGGACGAAA 60.300 57.895 8.01 0.00 37.61 3.46
382 383 2.336088 GGACAACGGACGGACGAA 59.664 61.111 8.01 0.00 37.61 3.85
411 412 5.662208 TGGTACCACCTCGGATATAGAAAAA 59.338 40.000 11.60 0.00 39.58 1.94
412 413 5.210430 TGGTACCACCTCGGATATAGAAAA 58.790 41.667 11.60 0.00 39.58 2.29
413 414 4.806892 TGGTACCACCTCGGATATAGAAA 58.193 43.478 11.60 0.00 39.58 2.52
415 416 4.458256 TTGGTACCACCTCGGATATAGA 57.542 45.455 16.04 0.00 39.58 1.98
416 417 5.017490 AGATTGGTACCACCTCGGATATAG 58.983 45.833 16.04 0.00 39.58 1.31
418 419 3.858135 AGATTGGTACCACCTCGGATAT 58.142 45.455 16.04 2.08 39.58 1.63
419 420 3.323774 AGATTGGTACCACCTCGGATA 57.676 47.619 16.04 0.00 39.58 2.59
420 421 2.176247 AGATTGGTACCACCTCGGAT 57.824 50.000 16.04 3.80 39.58 4.18
422 423 3.728845 CATAAGATTGGTACCACCTCGG 58.271 50.000 16.04 4.65 39.58 4.63
424 425 3.136626 AGGCATAAGATTGGTACCACCTC 59.863 47.826 16.04 14.51 39.58 3.85
426 427 3.577805 AGGCATAAGATTGGTACCACC 57.422 47.619 16.04 10.05 39.22 4.61
427 428 7.582667 AATAAAGGCATAAGATTGGTACCAC 57.417 36.000 16.04 3.90 0.00 4.16
428 429 8.602472 AAAATAAAGGCATAAGATTGGTACCA 57.398 30.769 11.60 11.60 0.00 3.25
429 430 9.313118 CAAAAATAAAGGCATAAGATTGGTACC 57.687 33.333 4.43 4.43 0.00 3.34
430 431 9.869757 ACAAAAATAAAGGCATAAGATTGGTAC 57.130 29.630 0.00 0.00 0.00 3.34
434 435 9.139174 ACGAACAAAAATAAAGGCATAAGATTG 57.861 29.630 0.00 0.00 0.00 2.67
435 436 9.353999 GACGAACAAAAATAAAGGCATAAGATT 57.646 29.630 0.00 0.00 0.00 2.40
436 437 7.973944 GGACGAACAAAAATAAAGGCATAAGAT 59.026 33.333 0.00 0.00 0.00 2.40
437 438 7.309920 GGACGAACAAAAATAAAGGCATAAGA 58.690 34.615 0.00 0.00 0.00 2.10
438 439 6.250527 CGGACGAACAAAAATAAAGGCATAAG 59.749 38.462 0.00 0.00 0.00 1.73
439 440 6.087522 CGGACGAACAAAAATAAAGGCATAA 58.912 36.000 0.00 0.00 0.00 1.90
441 442 4.022676 ACGGACGAACAAAAATAAAGGCAT 60.023 37.500 0.00 0.00 0.00 4.40
443 444 3.666797 CACGGACGAACAAAAATAAAGGC 59.333 43.478 0.00 0.00 0.00 4.35
444 445 3.666797 GCACGGACGAACAAAAATAAAGG 59.333 43.478 0.00 0.00 0.00 3.11
446 447 3.289911 CGCACGGACGAACAAAAATAAA 58.710 40.909 0.00 0.00 34.06 1.40
447 448 2.906153 CGCACGGACGAACAAAAATAA 58.094 42.857 0.00 0.00 34.06 1.40
448 449 1.398705 GCGCACGGACGAACAAAAATA 60.399 47.619 0.30 0.00 34.06 1.40
449 450 0.659123 GCGCACGGACGAACAAAAAT 60.659 50.000 0.30 0.00 34.06 1.82
450 451 1.297745 GCGCACGGACGAACAAAAA 60.298 52.632 0.30 0.00 34.06 1.94
451 452 2.325166 GCGCACGGACGAACAAAA 59.675 55.556 0.30 0.00 34.06 2.44
452 453 3.641986 GGCGCACGGACGAACAAA 61.642 61.111 10.83 0.00 34.06 2.83
453 454 4.893601 TGGCGCACGGACGAACAA 62.894 61.111 10.83 0.00 34.06 2.83
458 459 4.111016 TAGACTGGCGCACGGACG 62.111 66.667 10.83 0.00 0.00 4.79
459 460 2.202623 CTAGACTGGCGCACGGAC 60.203 66.667 10.83 4.36 0.00 4.79
468 469 5.324697 GCTACAAAATTTTCGCTAGACTGG 58.675 41.667 0.00 0.00 0.00 4.00
469 470 5.324697 GGCTACAAAATTTTCGCTAGACTG 58.675 41.667 0.00 0.00 0.00 3.51
470 471 4.395231 GGGCTACAAAATTTTCGCTAGACT 59.605 41.667 0.00 0.00 0.00 3.24
471 472 4.395231 AGGGCTACAAAATTTTCGCTAGAC 59.605 41.667 0.00 2.73 0.00 2.59
472 473 4.585879 AGGGCTACAAAATTTTCGCTAGA 58.414 39.130 0.00 0.00 0.00 2.43
474 475 4.142773 CGAAGGGCTACAAAATTTTCGCTA 60.143 41.667 0.00 0.00 31.21 4.26
475 476 3.365969 CGAAGGGCTACAAAATTTTCGCT 60.366 43.478 0.00 0.99 31.21 4.93
476 477 2.914838 CGAAGGGCTACAAAATTTTCGC 59.085 45.455 0.00 4.34 31.21 4.70
478 479 6.675026 AGTTACGAAGGGCTACAAAATTTTC 58.325 36.000 0.00 0.00 0.00 2.29
479 480 6.263617 TGAGTTACGAAGGGCTACAAAATTTT 59.736 34.615 0.00 0.00 0.00 1.82
483 484 4.060205 GTGAGTTACGAAGGGCTACAAAA 58.940 43.478 0.00 0.00 0.00 2.44
484 485 3.555586 GGTGAGTTACGAAGGGCTACAAA 60.556 47.826 0.00 0.00 0.00 2.83
486 487 1.547372 GGTGAGTTACGAAGGGCTACA 59.453 52.381 0.00 0.00 0.00 2.74
487 488 1.823610 AGGTGAGTTACGAAGGGCTAC 59.176 52.381 0.00 0.00 0.00 3.58
488 489 2.226962 AGGTGAGTTACGAAGGGCTA 57.773 50.000 0.00 0.00 0.00 3.93
491 492 2.423577 CCAAAGGTGAGTTACGAAGGG 58.576 52.381 0.00 0.00 0.00 3.95
493 494 1.804748 GCCCAAAGGTGAGTTACGAAG 59.195 52.381 0.00 0.00 34.57 3.79
494 495 1.543871 GGCCCAAAGGTGAGTTACGAA 60.544 52.381 0.00 0.00 34.57 3.85
496 497 0.250553 TGGCCCAAAGGTGAGTTACG 60.251 55.000 0.00 0.00 34.57 3.18
497 498 1.073284 TCTGGCCCAAAGGTGAGTTAC 59.927 52.381 0.00 0.00 34.57 2.50
498 499 1.440618 TCTGGCCCAAAGGTGAGTTA 58.559 50.000 0.00 0.00 34.57 2.24
500 501 0.779997 ATTCTGGCCCAAAGGTGAGT 59.220 50.000 0.00 0.00 34.57 3.41
503 504 2.028748 CAGAAATTCTGGCCCAAAGGTG 60.029 50.000 14.85 0.00 40.71 4.00
504 505 2.250924 CAGAAATTCTGGCCCAAAGGT 58.749 47.619 14.85 0.00 40.71 3.50
515 516 3.826729 GTGGCCCAAGTAACAGAAATTCT 59.173 43.478 0.00 0.00 0.00 2.40
516 517 3.056821 GGTGGCCCAAGTAACAGAAATTC 60.057 47.826 0.00 0.00 0.00 2.17
517 518 2.897326 GGTGGCCCAAGTAACAGAAATT 59.103 45.455 0.00 0.00 0.00 1.82
518 519 2.110011 AGGTGGCCCAAGTAACAGAAAT 59.890 45.455 0.00 0.00 0.00 2.17
519 520 1.497286 AGGTGGCCCAAGTAACAGAAA 59.503 47.619 0.00 0.00 0.00 2.52
520 521 1.145571 AGGTGGCCCAAGTAACAGAA 58.854 50.000 0.00 0.00 0.00 3.02
521 522 2.032965 TAGGTGGCCCAAGTAACAGA 57.967 50.000 0.00 0.00 0.00 3.41
522 523 2.871096 TTAGGTGGCCCAAGTAACAG 57.129 50.000 0.00 0.00 0.00 3.16
523 524 4.931027 TTATTAGGTGGCCCAAGTAACA 57.069 40.909 0.00 0.00 0.00 2.41
524 525 6.569780 CAATTTATTAGGTGGCCCAAGTAAC 58.430 40.000 0.00 0.00 0.00 2.50
525 526 5.128008 GCAATTTATTAGGTGGCCCAAGTAA 59.872 40.000 0.00 0.00 0.00 2.24
526 527 4.647399 GCAATTTATTAGGTGGCCCAAGTA 59.353 41.667 0.00 0.00 0.00 2.24
527 528 3.450817 GCAATTTATTAGGTGGCCCAAGT 59.549 43.478 0.00 0.00 0.00 3.16
528 529 3.706086 AGCAATTTATTAGGTGGCCCAAG 59.294 43.478 0.00 0.00 0.00 3.61
529 530 3.718723 AGCAATTTATTAGGTGGCCCAA 58.281 40.909 0.00 0.00 0.00 4.12
530 531 3.396685 AGCAATTTATTAGGTGGCCCA 57.603 42.857 0.00 0.00 0.00 5.36
531 532 3.704061 TGAAGCAATTTATTAGGTGGCCC 59.296 43.478 0.00 0.00 0.00 5.80
532 533 4.159506 TGTGAAGCAATTTATTAGGTGGCC 59.840 41.667 0.00 0.00 0.00 5.36
533 534 5.323371 TGTGAAGCAATTTATTAGGTGGC 57.677 39.130 0.00 0.00 0.00 5.01
534 535 9.520204 CTATTTGTGAAGCAATTTATTAGGTGG 57.480 33.333 0.00 0.00 36.89 4.61
535 536 9.023967 GCTATTTGTGAAGCAATTTATTAGGTG 57.976 33.333 0.00 0.00 38.63 4.00
536 537 8.197439 GGCTATTTGTGAAGCAATTTATTAGGT 58.803 33.333 0.00 0.00 40.61 3.08
537 538 8.196771 TGGCTATTTGTGAAGCAATTTATTAGG 58.803 33.333 0.00 0.00 40.61 2.69
538 539 9.241317 CTGGCTATTTGTGAAGCAATTTATTAG 57.759 33.333 0.00 0.00 40.61 1.73
539 540 8.965819 TCTGGCTATTTGTGAAGCAATTTATTA 58.034 29.630 0.00 0.00 40.61 0.98
540 541 7.761249 GTCTGGCTATTTGTGAAGCAATTTATT 59.239 33.333 0.00 0.00 40.61 1.40
541 542 7.093814 TGTCTGGCTATTTGTGAAGCAATTTAT 60.094 33.333 0.00 0.00 40.61 1.40
542 543 6.208402 TGTCTGGCTATTTGTGAAGCAATTTA 59.792 34.615 0.00 0.00 40.61 1.40
543 544 5.010922 TGTCTGGCTATTTGTGAAGCAATTT 59.989 36.000 0.00 0.00 40.61 1.82
544 545 4.523943 TGTCTGGCTATTTGTGAAGCAATT 59.476 37.500 0.00 0.00 40.61 2.32
545 546 4.081406 TGTCTGGCTATTTGTGAAGCAAT 58.919 39.130 0.00 0.00 40.61 3.56
546 547 3.485394 TGTCTGGCTATTTGTGAAGCAA 58.515 40.909 0.00 0.00 40.61 3.91
547 548 3.138884 TGTCTGGCTATTTGTGAAGCA 57.861 42.857 0.00 0.00 40.61 3.91
548 549 4.708726 AATGTCTGGCTATTTGTGAAGC 57.291 40.909 0.00 0.00 38.03 3.86
549 550 8.246180 ACAAATAATGTCTGGCTATTTGTGAAG 58.754 33.333 14.87 0.00 46.68 3.02
550 551 8.121305 ACAAATAATGTCTGGCTATTTGTGAA 57.879 30.769 14.87 0.00 46.68 3.18
551 552 7.701539 ACAAATAATGTCTGGCTATTTGTGA 57.298 32.000 14.87 0.00 46.68 3.58
554 555 9.683069 GGAATACAAATAATGTCTGGCTATTTG 57.317 33.333 10.61 10.61 43.72 2.32
555 556 8.567948 CGGAATACAAATAATGTCTGGCTATTT 58.432 33.333 0.00 0.00 42.70 1.40
556 557 7.719633 ACGGAATACAAATAATGTCTGGCTATT 59.280 33.333 0.00 0.00 42.70 1.73
557 558 7.224297 ACGGAATACAAATAATGTCTGGCTAT 58.776 34.615 0.00 0.00 42.70 2.97
558 559 6.588204 ACGGAATACAAATAATGTCTGGCTA 58.412 36.000 0.00 0.00 42.70 3.93
559 560 5.437060 ACGGAATACAAATAATGTCTGGCT 58.563 37.500 0.00 0.00 42.70 4.75
560 561 5.751243 ACGGAATACAAATAATGTCTGGC 57.249 39.130 0.00 0.00 42.70 4.85
561 562 8.889717 AGTAAACGGAATACAAATAATGTCTGG 58.110 33.333 0.00 0.00 42.70 3.86
591 592 8.712103 GGGTAACTATGGACTTTATTAAGGAGT 58.288 37.037 0.00 0.00 35.61 3.85
592 593 7.871463 CGGGTAACTATGGACTTTATTAAGGAG 59.129 40.741 0.00 0.00 35.61 3.69
593 594 7.345392 ACGGGTAACTATGGACTTTATTAAGGA 59.655 37.037 0.00 0.00 35.61 3.36
594 595 7.503549 ACGGGTAACTATGGACTTTATTAAGG 58.496 38.462 0.00 0.00 35.61 2.69
595 596 8.199449 TGACGGGTAACTATGGACTTTATTAAG 58.801 37.037 0.00 0.00 37.40 1.85
596 597 8.076910 TGACGGGTAACTATGGACTTTATTAA 57.923 34.615 0.00 0.00 0.00 1.40
597 598 7.658525 TGACGGGTAACTATGGACTTTATTA 57.341 36.000 0.00 0.00 0.00 0.98
598 599 6.549433 TGACGGGTAACTATGGACTTTATT 57.451 37.500 0.00 0.00 0.00 1.40
599 600 6.549433 TTGACGGGTAACTATGGACTTTAT 57.451 37.500 0.00 0.00 0.00 1.40
600 601 5.999205 TTGACGGGTAACTATGGACTTTA 57.001 39.130 0.00 0.00 0.00 1.85
601 602 4.895668 TTGACGGGTAACTATGGACTTT 57.104 40.909 0.00 0.00 0.00 2.66
602 603 4.895668 TTTGACGGGTAACTATGGACTT 57.104 40.909 0.00 0.00 0.00 3.01
603 604 4.895668 TTTTGACGGGTAACTATGGACT 57.104 40.909 0.00 0.00 0.00 3.85
629 630 7.577616 GCCTTAACATATGCACTTCTCCTTTTT 60.578 37.037 1.58 0.00 0.00 1.94
631 632 5.358160 GCCTTAACATATGCACTTCTCCTTT 59.642 40.000 1.58 0.00 0.00 3.11
638 639 2.943033 GACGGCCTTAACATATGCACTT 59.057 45.455 0.00 0.00 0.00 3.16
639 640 2.561569 GACGGCCTTAACATATGCACT 58.438 47.619 0.00 0.00 0.00 4.40
640 641 1.602377 GGACGGCCTTAACATATGCAC 59.398 52.381 0.00 0.00 0.00 4.57
642 643 0.865769 CGGACGGCCTTAACATATGC 59.134 55.000 5.33 0.00 0.00 3.14
643 644 0.865769 GCGGACGGCCTTAACATATG 59.134 55.000 5.33 0.00 34.80 1.78
644 645 0.466543 TGCGGACGGCCTTAACATAT 59.533 50.000 5.33 0.00 42.61 1.78
646 647 1.743995 GTGCGGACGGCCTTAACAT 60.744 57.895 5.33 0.00 42.61 2.71
648 649 3.122971 GGTGCGGACGGCCTTAAC 61.123 66.667 5.33 0.00 42.61 2.01
649 650 3.179888 TTGGTGCGGACGGCCTTAA 62.180 57.895 5.33 0.00 42.61 1.85
657 658 1.733399 GAGTCGTCTTGGTGCGGAC 60.733 63.158 0.00 0.00 0.00 4.79
658 659 2.649034 GAGTCGTCTTGGTGCGGA 59.351 61.111 0.00 0.00 0.00 5.54
659 660 2.805353 CGAGTCGTCTTGGTGCGG 60.805 66.667 3.82 0.00 0.00 5.69
660 661 2.805353 CCGAGTCGTCTTGGTGCG 60.805 66.667 12.31 0.00 39.71 5.34
666 667 2.621998 TCTTTTCTCACCGAGTCGTCTT 59.378 45.455 12.31 0.00 0.00 3.01
667 668 2.226912 CTCTTTTCTCACCGAGTCGTCT 59.773 50.000 12.31 0.00 0.00 4.18
668 669 2.030981 ACTCTTTTCTCACCGAGTCGTC 60.031 50.000 12.31 0.00 31.51 4.20
669 670 1.955080 ACTCTTTTCTCACCGAGTCGT 59.045 47.619 12.31 0.00 31.51 4.34
670 671 2.708386 ACTCTTTTCTCACCGAGTCG 57.292 50.000 5.29 5.29 31.51 4.18
672 673 6.014840 TGGTATTAACTCTTTTCTCACCGAGT 60.015 38.462 0.00 0.00 38.29 4.18
673 674 6.310711 GTGGTATTAACTCTTTTCTCACCGAG 59.689 42.308 0.00 0.00 0.00 4.63
675 676 5.929992 TGTGGTATTAACTCTTTTCTCACCG 59.070 40.000 0.00 0.00 0.00 4.94
676 677 7.739498 TTGTGGTATTAACTCTTTTCTCACC 57.261 36.000 0.00 0.00 0.00 4.02
677 678 9.612620 CAATTGTGGTATTAACTCTTTTCTCAC 57.387 33.333 0.00 0.00 0.00 3.51
678 679 8.792633 CCAATTGTGGTATTAACTCTTTTCTCA 58.207 33.333 4.43 0.00 40.42 3.27
846 1430 1.774217 AGGAGGGGTTGCAGGAACA 60.774 57.895 7.16 0.00 36.12 3.18
848 1432 3.170362 CAGGAGGGGTTGCAGGAA 58.830 61.111 0.00 0.00 0.00 3.36
918 1518 2.041686 GGACAGAGAGAGACGGCGT 61.042 63.158 14.65 14.65 0.00 5.68
924 1524 0.678366 GCGGAGTGGACAGAGAGAGA 60.678 60.000 0.00 0.00 0.00 3.10
926 1526 1.679305 GGCGGAGTGGACAGAGAGA 60.679 63.158 0.00 0.00 0.00 3.10
991 1659 1.586154 GACCCCTTCATGTTGCACGG 61.586 60.000 0.00 0.00 0.00 4.94
997 1665 1.909302 AGATGTCGACCCCTTCATGTT 59.091 47.619 14.12 0.00 0.00 2.71
1054 1728 4.498520 CGACGATGGCGCTGTCCT 62.499 66.667 7.64 0.00 42.48 3.85
1055 1729 4.492160 TCGACGATGGCGCTGTCC 62.492 66.667 7.64 0.00 42.48 4.02
1056 1730 2.951745 CTCGACGATGGCGCTGTC 60.952 66.667 7.64 9.80 42.48 3.51
1261 2794 9.615660 AGTATTTCAGTCCCCTACAATCATATA 57.384 33.333 0.00 0.00 0.00 0.86
1338 2881 2.076863 GGTCACTAGTGTCAATGCCAC 58.923 52.381 21.99 10.22 0.00 5.01
1659 3958 5.009410 CCTCATAATTTCAGCATCCTTGTCC 59.991 44.000 0.00 0.00 0.00 4.02
1843 4142 4.201657 CCTCTGACATCATGCCAAATACA 58.798 43.478 0.00 0.00 0.00 2.29
1860 4159 8.553459 ACTGATAACAAATAGTTTCACCTCTG 57.447 34.615 0.00 0.00 41.64 3.35
1974 4273 8.987599 ATAACAATACGTAGCAAATGATTTCG 57.012 30.769 0.08 0.00 0.00 3.46
1990 4289 9.862585 CAAGCCAAACTTTTTGAATAACAATAC 57.137 29.630 0.09 0.00 36.04 1.89
2196 4590 7.587629 TCATCTGAATTTTGCTTACAGTTCAG 58.412 34.615 6.59 6.59 39.92 3.02
2198 4592 7.061557 GCTTCATCTGAATTTTGCTTACAGTTC 59.938 37.037 0.00 0.00 33.01 3.01
2201 4595 6.384224 TGCTTCATCTGAATTTTGCTTACAG 58.616 36.000 0.00 0.00 33.01 2.74
2204 4598 8.836268 ATTTTGCTTCATCTGAATTTTGCTTA 57.164 26.923 0.00 0.00 33.01 3.09
2211 4605 9.985730 TTAACTGAATTTTGCTTCATCTGAATT 57.014 25.926 0.00 0.00 34.76 2.17
2219 4613 5.900425 TGCAGTTAACTGAATTTTGCTTCA 58.100 33.333 34.43 17.71 46.59 3.02
2221 4615 7.608308 TTTTGCAGTTAACTGAATTTTGCTT 57.392 28.000 34.43 0.00 46.59 3.91
2233 4627 9.313118 CCCTTCCAAATATATTTTGCAGTTAAC 57.687 33.333 8.01 0.00 0.00 2.01
2234 4628 8.482128 CCCCTTCCAAATATATTTTGCAGTTAA 58.518 33.333 8.01 0.00 0.00 2.01
2236 4630 6.632445 GCCCCTTCCAAATATATTTTGCAGTT 60.632 38.462 8.01 0.00 0.00 3.16
2237 4631 5.163311 GCCCCTTCCAAATATATTTTGCAGT 60.163 40.000 8.01 0.00 0.00 4.40
2238 4632 5.299949 GCCCCTTCCAAATATATTTTGCAG 58.700 41.667 8.01 5.16 0.00 4.41
2239 4633 4.102367 GGCCCCTTCCAAATATATTTTGCA 59.898 41.667 8.01 0.00 0.00 4.08
2242 4636 4.901927 TGGGCCCCTTCCAAATATATTTT 58.098 39.130 22.27 0.00 0.00 1.82
2245 4639 2.383338 CCTGGGCCCCTTCCAAATATAT 59.617 50.000 22.27 0.00 33.36 0.86
2274 4668 5.013547 CCAACATTCCCAATTGTACTACCA 58.986 41.667 4.43 0.00 0.00 3.25
2284 4678 4.686670 GCCAAATATGCCAACATTCCCAAT 60.687 41.667 0.00 0.00 37.74 3.16
2287 4681 2.170187 TGCCAAATATGCCAACATTCCC 59.830 45.455 0.00 0.00 37.74 3.97
2313 4707 5.636903 AATAGAATGTACCAGGTGCTCAT 57.363 39.130 9.36 5.25 0.00 2.90
2346 4740 1.666580 CATGTTGTGCCCATGTGCA 59.333 52.632 0.00 0.00 39.37 4.57
2410 4804 4.095410 TCTATTTTGAGCATTTGCCGTG 57.905 40.909 0.00 0.00 43.38 4.94
2413 4807 6.920210 GGTCTTATCTATTTTGAGCATTTGCC 59.080 38.462 0.00 0.00 43.38 4.52
2415 4809 8.680903 ACTGGTCTTATCTATTTTGAGCATTTG 58.319 33.333 0.00 0.00 35.17 2.32
2417 4811 8.814038 AACTGGTCTTATCTATTTTGAGCATT 57.186 30.769 0.00 0.00 35.17 3.56
2418 4812 8.049117 TGAACTGGTCTTATCTATTTTGAGCAT 58.951 33.333 0.00 0.00 35.17 3.79
2543 6067 3.008835 TGGAAATGAGGATGCAGAAGG 57.991 47.619 0.00 0.00 0.00 3.46
2570 6364 7.665559 TGATATCATACTAAAAGGATGCCCAAC 59.334 37.037 0.00 0.00 33.88 3.77
2597 6391 9.213799 GGAGAACAAGATTCAGACATTATATCC 57.786 37.037 0.00 0.00 0.00 2.59
2712 6506 2.485479 CCCGGGAAAGACTATGGTGATG 60.485 54.545 18.48 0.00 0.00 3.07
2731 6525 2.215942 AGGTGTACTGGATTTTGCCC 57.784 50.000 0.00 0.00 0.00 5.36
2797 6591 1.991813 TGGTCACTGGGGATGATCAAA 59.008 47.619 0.00 0.00 34.24 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.