Multiple sequence alignment - TraesCS3A01G014300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G014300 chr3A 100.000 2549 0 0 1 2549 9952086 9954634 0.000000e+00 4708
1 TraesCS3A01G014300 chr3A 99.140 1977 14 1 573 2549 54951918 54953891 0.000000e+00 3554
2 TraesCS3A01G014300 chr3A 80.412 582 76 20 1 572 9889535 9890088 2.360000e-110 409
3 TraesCS3A01G014300 chr2B 99.144 1986 15 1 564 2549 776222953 776224936 0.000000e+00 3572
4 TraesCS3A01G014300 chr2B 99.091 1980 16 1 570 2549 781094238 781096215 0.000000e+00 3555
5 TraesCS3A01G014300 chr2B 98.797 1995 21 2 557 2549 788228842 788230835 0.000000e+00 3548
6 TraesCS3A01G014300 chr5B 99.191 1977 15 1 573 2549 641128779 641126804 0.000000e+00 3561
7 TraesCS3A01G014300 chr3B 99.191 1977 13 1 573 2549 702857654 702855681 0.000000e+00 3559
8 TraesCS3A01G014300 chr7A 99.140 1977 15 1 573 2549 39015368 39017342 0.000000e+00 3555
9 TraesCS3A01G014300 chr4B 99.140 1977 15 2 573 2549 368430367 368428393 0.000000e+00 3555
10 TraesCS3A01G014300 chr7B 98.893 1988 16 3 563 2549 202776905 202778887 0.000000e+00 3544
11 TraesCS3A01G014300 chrUn 93.368 573 31 2 1 572 35645957 35646523 0.000000e+00 841
12 TraesCS3A01G014300 chrUn 82.469 405 65 5 1 399 308559168 308559572 1.450000e-92 350
13 TraesCS3A01G014300 chr3D 90.818 599 27 11 1 572 4346676 4347273 0.000000e+00 776
14 TraesCS3A01G014300 chr3D 83.509 570 75 16 1 558 4318955 4319517 4.860000e-142 514


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G014300 chr3A 9952086 9954634 2548 False 4708 4708 100.000 1 2549 1 chr3A.!!$F2 2548
1 TraesCS3A01G014300 chr3A 54951918 54953891 1973 False 3554 3554 99.140 573 2549 1 chr3A.!!$F3 1976
2 TraesCS3A01G014300 chr3A 9889535 9890088 553 False 409 409 80.412 1 572 1 chr3A.!!$F1 571
3 TraesCS3A01G014300 chr2B 776222953 776224936 1983 False 3572 3572 99.144 564 2549 1 chr2B.!!$F1 1985
4 TraesCS3A01G014300 chr2B 781094238 781096215 1977 False 3555 3555 99.091 570 2549 1 chr2B.!!$F2 1979
5 TraesCS3A01G014300 chr2B 788228842 788230835 1993 False 3548 3548 98.797 557 2549 1 chr2B.!!$F3 1992
6 TraesCS3A01G014300 chr5B 641126804 641128779 1975 True 3561 3561 99.191 573 2549 1 chr5B.!!$R1 1976
7 TraesCS3A01G014300 chr3B 702855681 702857654 1973 True 3559 3559 99.191 573 2549 1 chr3B.!!$R1 1976
8 TraesCS3A01G014300 chr7A 39015368 39017342 1974 False 3555 3555 99.140 573 2549 1 chr7A.!!$F1 1976
9 TraesCS3A01G014300 chr4B 368428393 368430367 1974 True 3555 3555 99.140 573 2549 1 chr4B.!!$R1 1976
10 TraesCS3A01G014300 chr7B 202776905 202778887 1982 False 3544 3544 98.893 563 2549 1 chr7B.!!$F1 1986
11 TraesCS3A01G014300 chrUn 35645957 35646523 566 False 841 841 93.368 1 572 1 chrUn.!!$F1 571
12 TraesCS3A01G014300 chr3D 4346676 4347273 597 False 776 776 90.818 1 572 1 chr3D.!!$F2 571
13 TraesCS3A01G014300 chr3D 4318955 4319517 562 False 514 514 83.509 1 558 1 chr3D.!!$F1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.033011 ACCTCGTGGCAGATCCTAGT 60.033 55.0 2.76 0.0 36.63 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2045 2248 1.54917 CACCTGGCGTAAACCTCTACT 59.451 52.381 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.847444 CTTAACAGATTATGCTTTGAATCCAC 57.153 34.615 0.00 0.00 33.34 4.02
26 27 8.579850 TTAACAGATTATGCTTTGAATCCACT 57.420 30.769 0.00 0.00 33.34 4.00
27 28 6.446781 ACAGATTATGCTTTGAATCCACTG 57.553 37.500 0.00 0.00 33.34 3.66
28 29 5.163581 ACAGATTATGCTTTGAATCCACTGC 60.164 40.000 0.00 0.00 33.34 4.40
29 30 3.763097 TTATGCTTTGAATCCACTGCG 57.237 42.857 0.00 0.00 0.00 5.18
30 31 0.171903 ATGCTTTGAATCCACTGCGC 59.828 50.000 0.00 0.00 0.00 6.09
31 32 1.512734 GCTTTGAATCCACTGCGCG 60.513 57.895 0.00 0.00 0.00 6.86
32 33 1.512734 CTTTGAATCCACTGCGCGC 60.513 57.895 27.26 27.26 0.00 6.86
33 34 3.307505 TTTGAATCCACTGCGCGCG 62.308 57.895 28.44 28.44 0.00 6.86
34 35 4.733371 TGAATCCACTGCGCGCGA 62.733 61.111 37.18 17.95 0.00 5.87
35 36 3.264897 GAATCCACTGCGCGCGAT 61.265 61.111 37.18 19.51 0.00 4.58
36 37 1.949133 GAATCCACTGCGCGCGATA 60.949 57.895 37.18 20.67 0.00 2.92
37 38 2.147204 GAATCCACTGCGCGCGATAC 62.147 60.000 37.18 17.29 0.00 2.24
38 39 4.865761 TCCACTGCGCGCGATACC 62.866 66.667 37.18 16.86 0.00 2.73
39 40 4.873129 CCACTGCGCGCGATACCT 62.873 66.667 37.18 7.07 0.00 3.08
40 41 2.885644 CACTGCGCGCGATACCTT 60.886 61.111 37.18 7.54 0.00 3.50
41 42 1.587876 CACTGCGCGCGATACCTTA 60.588 57.895 37.18 4.75 0.00 2.69
42 43 0.939577 CACTGCGCGCGATACCTTAT 60.940 55.000 37.18 5.91 0.00 1.73
43 44 0.249322 ACTGCGCGCGATACCTTATT 60.249 50.000 37.18 2.66 0.00 1.40
44 45 0.435008 CTGCGCGCGATACCTTATTC 59.565 55.000 37.18 12.22 0.00 1.75
45 46 0.249114 TGCGCGCGATACCTTATTCA 60.249 50.000 37.18 15.07 0.00 2.57
46 47 0.435008 GCGCGCGATACCTTATTCAG 59.565 55.000 37.18 0.00 0.00 3.02
47 48 0.435008 CGCGCGATACCTTATTCAGC 59.565 55.000 28.94 0.00 0.00 4.26
48 49 0.790814 GCGCGATACCTTATTCAGCC 59.209 55.000 12.10 0.00 0.00 4.85
49 50 1.872237 GCGCGATACCTTATTCAGCCA 60.872 52.381 12.10 0.00 0.00 4.75
50 51 2.688507 CGCGATACCTTATTCAGCCAT 58.311 47.619 0.00 0.00 0.00 4.40
51 52 3.845178 CGCGATACCTTATTCAGCCATA 58.155 45.455 0.00 0.00 0.00 2.74
52 53 3.859961 CGCGATACCTTATTCAGCCATAG 59.140 47.826 0.00 0.00 0.00 2.23
53 54 4.618460 CGCGATACCTTATTCAGCCATAGT 60.618 45.833 0.00 0.00 0.00 2.12
54 55 5.238583 GCGATACCTTATTCAGCCATAGTT 58.761 41.667 0.00 0.00 0.00 2.24
55 56 5.348997 GCGATACCTTATTCAGCCATAGTTC 59.651 44.000 0.00 0.00 0.00 3.01
56 57 5.869888 CGATACCTTATTCAGCCATAGTTCC 59.130 44.000 0.00 0.00 0.00 3.62
57 58 6.518369 CGATACCTTATTCAGCCATAGTTCCA 60.518 42.308 0.00 0.00 0.00 3.53
58 59 5.450818 ACCTTATTCAGCCATAGTTCCAA 57.549 39.130 0.00 0.00 0.00 3.53
59 60 5.440610 ACCTTATTCAGCCATAGTTCCAAG 58.559 41.667 0.00 0.00 0.00 3.61
60 61 5.191722 ACCTTATTCAGCCATAGTTCCAAGA 59.808 40.000 0.00 0.00 0.00 3.02
61 62 6.122277 CCTTATTCAGCCATAGTTCCAAGAA 58.878 40.000 0.00 0.00 0.00 2.52
62 63 6.603201 CCTTATTCAGCCATAGTTCCAAGAAA 59.397 38.462 0.00 0.00 0.00 2.52
63 64 7.201767 CCTTATTCAGCCATAGTTCCAAGAAAG 60.202 40.741 0.00 0.00 0.00 2.62
64 65 4.908601 TCAGCCATAGTTCCAAGAAAGA 57.091 40.909 0.00 0.00 0.00 2.52
65 66 5.241403 TCAGCCATAGTTCCAAGAAAGAA 57.759 39.130 0.00 0.00 0.00 2.52
66 67 5.248640 TCAGCCATAGTTCCAAGAAAGAAG 58.751 41.667 0.00 0.00 0.00 2.85
67 68 4.397417 CAGCCATAGTTCCAAGAAAGAAGG 59.603 45.833 0.00 0.00 0.00 3.46
68 69 4.289672 AGCCATAGTTCCAAGAAAGAAGGA 59.710 41.667 0.00 0.00 0.00 3.36
69 70 5.010282 GCCATAGTTCCAAGAAAGAAGGAA 58.990 41.667 0.00 0.00 39.01 3.36
70 71 5.654209 GCCATAGTTCCAAGAAAGAAGGAAT 59.346 40.000 0.00 0.00 42.82 3.01
71 72 6.153510 GCCATAGTTCCAAGAAAGAAGGAATT 59.846 38.462 0.00 0.00 42.82 2.17
72 73 7.339466 GCCATAGTTCCAAGAAAGAAGGAATTA 59.661 37.037 0.00 0.00 42.82 1.40
73 74 8.678199 CCATAGTTCCAAGAAAGAAGGAATTAC 58.322 37.037 0.00 0.00 42.82 1.89
74 75 8.678199 CATAGTTCCAAGAAAGAAGGAATTACC 58.322 37.037 0.00 0.00 42.82 2.85
75 76 6.610830 AGTTCCAAGAAAGAAGGAATTACCA 58.389 36.000 0.00 0.00 42.82 3.25
76 77 7.066781 AGTTCCAAGAAAGAAGGAATTACCAA 58.933 34.615 0.00 0.00 42.82 3.67
77 78 6.894339 TCCAAGAAAGAAGGAATTACCAAC 57.106 37.500 0.00 0.00 42.04 3.77
78 79 5.472137 TCCAAGAAAGAAGGAATTACCAACG 59.528 40.000 0.00 0.00 42.04 4.10
79 80 5.335661 CCAAGAAAGAAGGAATTACCAACGG 60.336 44.000 0.00 0.00 42.04 4.44
80 81 4.981812 AGAAAGAAGGAATTACCAACGGT 58.018 39.130 0.00 0.00 42.04 4.83
81 82 4.760204 AGAAAGAAGGAATTACCAACGGTG 59.240 41.667 0.00 0.00 42.04 4.94
82 83 4.360951 AAGAAGGAATTACCAACGGTGA 57.639 40.909 0.00 0.00 42.04 4.02
83 84 3.671716 AGAAGGAATTACCAACGGTGAC 58.328 45.455 0.00 0.00 42.04 3.67
84 85 3.071892 AGAAGGAATTACCAACGGTGACA 59.928 43.478 0.00 0.00 42.04 3.58
85 86 2.774687 AGGAATTACCAACGGTGACAC 58.225 47.619 0.00 0.00 42.04 3.67
86 87 2.370849 AGGAATTACCAACGGTGACACT 59.629 45.455 0.00 0.00 42.04 3.55
87 88 3.143728 GGAATTACCAACGGTGACACTT 58.856 45.455 0.00 0.00 36.19 3.16
88 89 3.058501 GGAATTACCAACGGTGACACTTG 60.059 47.826 0.00 3.17 36.19 3.16
89 90 1.956297 TTACCAACGGTGACACTTGG 58.044 50.000 19.85 19.85 40.40 3.61
90 91 0.107081 TACCAACGGTGACACTTGGG 59.893 55.000 23.36 13.26 39.09 4.12
91 92 1.896660 CCAACGGTGACACTTGGGG 60.897 63.158 15.61 5.82 32.24 4.96
92 93 1.147376 CAACGGTGACACTTGGGGA 59.853 57.895 5.39 0.00 0.00 4.81
93 94 1.147600 AACGGTGACACTTGGGGAC 59.852 57.895 5.39 0.00 0.00 4.46
106 107 2.501610 GGGACCTCGTGGCAGATC 59.498 66.667 2.76 0.00 36.63 2.75
107 108 2.501610 GGACCTCGTGGCAGATCC 59.498 66.667 2.76 0.00 36.63 3.36
108 109 2.060980 GGACCTCGTGGCAGATCCT 61.061 63.158 2.76 0.00 36.63 3.24
109 110 0.755698 GGACCTCGTGGCAGATCCTA 60.756 60.000 2.76 0.00 36.63 2.94
110 111 0.671251 GACCTCGTGGCAGATCCTAG 59.329 60.000 2.76 0.00 36.63 3.02
111 112 0.033011 ACCTCGTGGCAGATCCTAGT 60.033 55.000 2.76 0.00 36.63 2.57
112 113 0.387202 CCTCGTGGCAGATCCTAGTG 59.613 60.000 0.00 0.00 35.26 2.74
113 114 1.107114 CTCGTGGCAGATCCTAGTGT 58.893 55.000 0.00 0.00 35.26 3.55
114 115 1.478510 CTCGTGGCAGATCCTAGTGTT 59.521 52.381 0.00 0.00 35.26 3.32
115 116 2.688446 CTCGTGGCAGATCCTAGTGTTA 59.312 50.000 0.00 0.00 35.26 2.41
116 117 2.688446 TCGTGGCAGATCCTAGTGTTAG 59.312 50.000 0.00 0.00 35.26 2.34
117 118 2.223829 CGTGGCAGATCCTAGTGTTAGG 60.224 54.545 0.00 0.00 46.73 2.69
118 119 1.762957 TGGCAGATCCTAGTGTTAGGC 59.237 52.381 0.00 0.00 45.25 3.93
119 120 1.070914 GGCAGATCCTAGTGTTAGGCC 59.929 57.143 0.00 0.00 45.25 5.19
120 121 1.762957 GCAGATCCTAGTGTTAGGCCA 59.237 52.381 5.01 0.00 45.25 5.36
121 122 2.170607 GCAGATCCTAGTGTTAGGCCAA 59.829 50.000 5.01 0.00 45.25 4.52
122 123 3.370527 GCAGATCCTAGTGTTAGGCCAAA 60.371 47.826 5.01 0.00 45.25 3.28
123 124 4.843728 CAGATCCTAGTGTTAGGCCAAAA 58.156 43.478 5.01 0.00 45.25 2.44
124 125 4.878397 CAGATCCTAGTGTTAGGCCAAAAG 59.122 45.833 5.01 0.00 45.25 2.27
125 126 3.713826 TCCTAGTGTTAGGCCAAAAGG 57.286 47.619 5.01 1.50 45.25 3.11
126 127 2.307686 TCCTAGTGTTAGGCCAAAAGGG 59.692 50.000 5.01 0.00 45.25 3.95
127 128 2.620627 CCTAGTGTTAGGCCAAAAGGGG 60.621 54.545 5.01 0.00 40.10 4.79
128 129 1.154430 AGTGTTAGGCCAAAAGGGGA 58.846 50.000 5.01 0.00 37.04 4.81
129 130 1.075536 AGTGTTAGGCCAAAAGGGGAG 59.924 52.381 5.01 0.00 37.04 4.30
130 131 1.154430 TGTTAGGCCAAAAGGGGAGT 58.846 50.000 5.01 0.00 37.04 3.85
131 132 1.501604 TGTTAGGCCAAAAGGGGAGTT 59.498 47.619 5.01 0.00 37.04 3.01
132 133 2.168496 GTTAGGCCAAAAGGGGAGTTC 58.832 52.381 5.01 0.00 37.04 3.01
133 134 1.451449 TAGGCCAAAAGGGGAGTTCA 58.549 50.000 5.01 0.00 37.04 3.18
134 135 0.560688 AGGCCAAAAGGGGAGTTCAA 59.439 50.000 5.01 0.00 37.04 2.69
135 136 1.149923 AGGCCAAAAGGGGAGTTCAAT 59.850 47.619 5.01 0.00 37.04 2.57
136 137 1.977854 GGCCAAAAGGGGAGTTCAATT 59.022 47.619 0.00 0.00 37.04 2.32
137 138 2.371841 GGCCAAAAGGGGAGTTCAATTT 59.628 45.455 0.00 0.00 37.04 1.82
138 139 3.580895 GGCCAAAAGGGGAGTTCAATTTA 59.419 43.478 0.00 0.00 37.04 1.40
139 140 4.322725 GGCCAAAAGGGGAGTTCAATTTAG 60.323 45.833 0.00 0.00 37.04 1.85
140 141 4.283467 GCCAAAAGGGGAGTTCAATTTAGT 59.717 41.667 0.00 0.00 37.04 2.24
141 142 5.783111 CCAAAAGGGGAGTTCAATTTAGTG 58.217 41.667 0.00 0.00 0.00 2.74
142 143 5.538433 CCAAAAGGGGAGTTCAATTTAGTGA 59.462 40.000 0.00 0.00 0.00 3.41
143 144 6.447162 CAAAAGGGGAGTTCAATTTAGTGAC 58.553 40.000 0.00 0.00 0.00 3.67
144 145 4.993705 AGGGGAGTTCAATTTAGTGACA 57.006 40.909 0.00 0.00 0.00 3.58
145 146 5.520748 AGGGGAGTTCAATTTAGTGACAT 57.479 39.130 0.00 0.00 0.00 3.06
146 147 5.256474 AGGGGAGTTCAATTTAGTGACATG 58.744 41.667 0.00 0.00 0.00 3.21
147 148 4.399303 GGGGAGTTCAATTTAGTGACATGG 59.601 45.833 0.00 0.00 0.00 3.66
148 149 4.399303 GGGAGTTCAATTTAGTGACATGGG 59.601 45.833 0.00 0.00 0.00 4.00
149 150 5.253330 GGAGTTCAATTTAGTGACATGGGA 58.747 41.667 0.00 0.00 0.00 4.37
150 151 5.710099 GGAGTTCAATTTAGTGACATGGGAA 59.290 40.000 0.00 0.00 0.00 3.97
151 152 6.378280 GGAGTTCAATTTAGTGACATGGGAAT 59.622 38.462 0.00 0.00 0.00 3.01
152 153 7.396540 AGTTCAATTTAGTGACATGGGAATC 57.603 36.000 0.00 0.00 0.00 2.52
153 154 6.947733 AGTTCAATTTAGTGACATGGGAATCA 59.052 34.615 0.00 0.00 0.00 2.57
154 155 7.451255 AGTTCAATTTAGTGACATGGGAATCAA 59.549 33.333 0.00 0.00 0.00 2.57
155 156 7.395190 TCAATTTAGTGACATGGGAATCAAG 57.605 36.000 0.00 0.00 0.00 3.02
156 157 6.377996 TCAATTTAGTGACATGGGAATCAAGG 59.622 38.462 0.00 0.00 0.00 3.61
157 158 5.512942 TTTAGTGACATGGGAATCAAGGA 57.487 39.130 0.00 0.00 0.00 3.36
158 159 5.715439 TTAGTGACATGGGAATCAAGGAT 57.285 39.130 0.00 0.00 0.00 3.24
159 160 4.598036 AGTGACATGGGAATCAAGGATT 57.402 40.909 0.00 0.00 34.71 3.01
160 161 4.530875 AGTGACATGGGAATCAAGGATTC 58.469 43.478 9.85 9.85 45.26 2.52
176 177 2.879026 GGATTCCTCCTTACAATTCCGC 59.121 50.000 0.00 0.00 38.65 5.54
177 178 3.541632 GATTCCTCCTTACAATTCCGCA 58.458 45.455 0.00 0.00 0.00 5.69
178 179 3.644966 TTCCTCCTTACAATTCCGCAT 57.355 42.857 0.00 0.00 0.00 4.73
179 180 3.194005 TCCTCCTTACAATTCCGCATC 57.806 47.619 0.00 0.00 0.00 3.91
180 181 2.771943 TCCTCCTTACAATTCCGCATCT 59.228 45.455 0.00 0.00 0.00 2.90
181 182 3.199946 TCCTCCTTACAATTCCGCATCTT 59.800 43.478 0.00 0.00 0.00 2.40
182 183 4.407621 TCCTCCTTACAATTCCGCATCTTA 59.592 41.667 0.00 0.00 0.00 2.10
183 184 4.511826 CCTCCTTACAATTCCGCATCTTAC 59.488 45.833 0.00 0.00 0.00 2.34
184 185 5.353394 TCCTTACAATTCCGCATCTTACT 57.647 39.130 0.00 0.00 0.00 2.24
185 186 5.741011 TCCTTACAATTCCGCATCTTACTT 58.259 37.500 0.00 0.00 0.00 2.24
186 187 6.177610 TCCTTACAATTCCGCATCTTACTTT 58.822 36.000 0.00 0.00 0.00 2.66
187 188 6.093495 TCCTTACAATTCCGCATCTTACTTTG 59.907 38.462 0.00 0.00 0.00 2.77
188 189 6.128007 CCTTACAATTCCGCATCTTACTTTGT 60.128 38.462 0.00 0.00 0.00 2.83
189 190 5.705609 ACAATTCCGCATCTTACTTTGTT 57.294 34.783 0.00 0.00 0.00 2.83
190 191 5.699839 ACAATTCCGCATCTTACTTTGTTC 58.300 37.500 0.00 0.00 0.00 3.18
191 192 4.965119 ATTCCGCATCTTACTTTGTTCC 57.035 40.909 0.00 0.00 0.00 3.62
192 193 3.410631 TCCGCATCTTACTTTGTTCCA 57.589 42.857 0.00 0.00 0.00 3.53
193 194 3.334691 TCCGCATCTTACTTTGTTCCAG 58.665 45.455 0.00 0.00 0.00 3.86
194 195 3.007506 TCCGCATCTTACTTTGTTCCAGA 59.992 43.478 0.00 0.00 0.00 3.86
195 196 3.125316 CCGCATCTTACTTTGTTCCAGAC 59.875 47.826 0.00 0.00 0.00 3.51
196 197 3.997021 CGCATCTTACTTTGTTCCAGACT 59.003 43.478 0.00 0.00 0.00 3.24
197 198 4.143030 CGCATCTTACTTTGTTCCAGACTG 60.143 45.833 0.00 0.00 0.00 3.51
198 199 4.154918 GCATCTTACTTTGTTCCAGACTGG 59.845 45.833 15.99 15.99 39.43 4.00
199 200 4.351874 TCTTACTTTGTTCCAGACTGGG 57.648 45.455 21.56 6.64 38.32 4.45
200 201 3.714798 TCTTACTTTGTTCCAGACTGGGT 59.285 43.478 21.56 12.20 38.32 4.51
201 202 4.165372 TCTTACTTTGTTCCAGACTGGGTT 59.835 41.667 21.56 1.33 38.32 4.11
202 203 2.932261 ACTTTGTTCCAGACTGGGTTC 58.068 47.619 21.56 12.06 38.32 3.62
203 204 2.241176 ACTTTGTTCCAGACTGGGTTCA 59.759 45.455 21.56 14.32 38.32 3.18
204 205 2.638480 TTGTTCCAGACTGGGTTCAG 57.362 50.000 21.56 0.00 46.10 3.02
205 206 0.764890 TGTTCCAGACTGGGTTCAGG 59.235 55.000 21.56 0.00 44.99 3.86
206 207 1.056660 GTTCCAGACTGGGTTCAGGA 58.943 55.000 21.56 0.00 44.99 3.86
207 208 1.630878 GTTCCAGACTGGGTTCAGGAT 59.369 52.381 21.56 0.00 44.99 3.24
208 209 2.838202 GTTCCAGACTGGGTTCAGGATA 59.162 50.000 21.56 0.00 44.99 2.59
209 210 3.421394 TCCAGACTGGGTTCAGGATAT 57.579 47.619 21.56 0.00 44.99 1.63
210 211 3.041211 TCCAGACTGGGTTCAGGATATG 58.959 50.000 21.56 0.00 44.99 1.78
211 212 2.486191 CCAGACTGGGTTCAGGATATGC 60.486 54.545 14.26 0.00 44.99 3.14
212 213 2.437281 CAGACTGGGTTCAGGATATGCT 59.563 50.000 0.00 0.00 44.99 3.79
213 214 3.118112 CAGACTGGGTTCAGGATATGCTT 60.118 47.826 0.00 0.00 44.99 3.91
214 215 3.118112 AGACTGGGTTCAGGATATGCTTG 60.118 47.826 0.00 0.00 44.99 4.01
215 216 2.846206 ACTGGGTTCAGGATATGCTTGA 59.154 45.455 0.00 0.00 44.99 3.02
216 217 3.266772 ACTGGGTTCAGGATATGCTTGAA 59.733 43.478 0.00 0.00 44.99 2.69
217 218 3.881688 CTGGGTTCAGGATATGCTTGAAG 59.118 47.826 0.00 0.00 42.41 3.02
218 219 3.217626 GGGTTCAGGATATGCTTGAAGG 58.782 50.000 0.00 0.00 42.41 3.46
219 220 3.372025 GGGTTCAGGATATGCTTGAAGGT 60.372 47.826 0.00 0.00 42.41 3.50
220 221 4.141482 GGGTTCAGGATATGCTTGAAGGTA 60.141 45.833 0.00 0.00 42.41 3.08
221 222 4.816925 GGTTCAGGATATGCTTGAAGGTAC 59.183 45.833 0.00 0.00 42.41 3.34
222 223 4.689612 TCAGGATATGCTTGAAGGTACC 57.310 45.455 2.73 2.73 28.55 3.34
223 224 3.391296 TCAGGATATGCTTGAAGGTACCC 59.609 47.826 8.74 0.00 28.55 3.69
224 225 3.392616 CAGGATATGCTTGAAGGTACCCT 59.607 47.826 8.74 0.00 33.87 4.34
225 226 3.648545 AGGATATGCTTGAAGGTACCCTC 59.351 47.826 8.74 5.81 30.89 4.30
226 227 3.648545 GGATATGCTTGAAGGTACCCTCT 59.351 47.826 8.74 0.00 30.89 3.69
227 228 4.103311 GGATATGCTTGAAGGTACCCTCTT 59.897 45.833 8.74 0.00 30.89 2.85
228 229 2.859165 TGCTTGAAGGTACCCTCTTG 57.141 50.000 8.74 3.77 30.89 3.02
229 230 1.271379 TGCTTGAAGGTACCCTCTTGC 60.271 52.381 8.74 13.71 30.89 4.01
230 231 1.950954 GCTTGAAGGTACCCTCTTGCC 60.951 57.143 8.74 0.00 30.89 4.52
231 232 1.351017 CTTGAAGGTACCCTCTTGCCA 59.649 52.381 8.74 0.00 30.89 4.92
232 233 1.440618 TGAAGGTACCCTCTTGCCAA 58.559 50.000 8.74 0.00 30.89 4.52
233 234 1.351017 TGAAGGTACCCTCTTGCCAAG 59.649 52.381 8.74 0.00 30.89 3.61
234 235 0.698818 AAGGTACCCTCTTGCCAAGG 59.301 55.000 8.74 0.00 30.89 3.61
235 236 0.178873 AGGTACCCTCTTGCCAAGGA 60.179 55.000 8.74 0.00 35.83 3.36
236 237 0.253327 GGTACCCTCTTGCCAAGGAG 59.747 60.000 4.30 1.15 35.83 3.69
237 238 0.253327 GTACCCTCTTGCCAAGGAGG 59.747 60.000 4.30 9.78 46.22 4.30
241 242 2.865492 CTCTTGCCAAGGAGGAAGC 58.135 57.895 4.30 0.00 41.22 3.86
242 243 1.003355 TCTTGCCAAGGAGGAAGCG 60.003 57.895 4.30 0.00 41.22 4.68
243 244 1.003355 CTTGCCAAGGAGGAAGCGA 60.003 57.895 0.00 0.00 41.22 4.93
244 245 1.301677 CTTGCCAAGGAGGAAGCGAC 61.302 60.000 0.00 0.00 41.22 5.19
245 246 2.815647 GCCAAGGAGGAAGCGACG 60.816 66.667 0.00 0.00 41.22 5.12
246 247 2.815647 CCAAGGAGGAAGCGACGC 60.816 66.667 13.03 13.03 41.22 5.19
247 248 3.181967 CAAGGAGGAAGCGACGCG 61.182 66.667 15.18 3.53 0.00 6.01
248 249 3.371063 AAGGAGGAAGCGACGCGA 61.371 61.111 15.93 0.00 0.00 5.87
249 250 2.927580 AAGGAGGAAGCGACGCGAA 61.928 57.895 15.93 0.00 0.00 4.70
250 251 2.202756 GGAGGAAGCGACGCGAAT 60.203 61.111 15.93 4.74 0.00 3.34
251 252 1.810030 GGAGGAAGCGACGCGAATT 60.810 57.895 15.93 2.94 0.00 2.17
252 253 1.631595 GAGGAAGCGACGCGAATTC 59.368 57.895 15.93 12.65 0.00 2.17
253 254 1.753468 GAGGAAGCGACGCGAATTCC 61.753 60.000 24.32 24.32 41.35 3.01
254 255 2.098233 GGAAGCGACGCGAATTCCA 61.098 57.895 25.89 0.00 41.00 3.53
255 256 1.429148 GGAAGCGACGCGAATTCCAT 61.429 55.000 25.89 1.68 41.00 3.41
256 257 0.315382 GAAGCGACGCGAATTCCATG 60.315 55.000 15.93 0.00 0.00 3.66
257 258 1.019278 AAGCGACGCGAATTCCATGT 61.019 50.000 15.93 0.00 0.00 3.21
258 259 0.179121 AGCGACGCGAATTCCATGTA 60.179 50.000 15.93 0.00 0.00 2.29
259 260 0.859232 GCGACGCGAATTCCATGTAT 59.141 50.000 15.93 0.00 0.00 2.29
260 261 2.055838 GCGACGCGAATTCCATGTATA 58.944 47.619 15.93 0.00 0.00 1.47
261 262 2.473609 GCGACGCGAATTCCATGTATAA 59.526 45.455 15.93 0.00 0.00 0.98
262 263 3.122948 GCGACGCGAATTCCATGTATAAT 59.877 43.478 15.93 0.00 0.00 1.28
263 264 4.721226 GCGACGCGAATTCCATGTATAATC 60.721 45.833 15.93 0.00 0.00 1.75
264 265 4.621460 CGACGCGAATTCCATGTATAATCT 59.379 41.667 15.93 0.00 0.00 2.40
265 266 5.118664 CGACGCGAATTCCATGTATAATCTT 59.881 40.000 15.93 0.00 0.00 2.40
266 267 6.307077 CGACGCGAATTCCATGTATAATCTTA 59.693 38.462 15.93 0.00 0.00 2.10
267 268 7.009265 CGACGCGAATTCCATGTATAATCTTAT 59.991 37.037 15.93 0.00 0.00 1.73
268 269 9.297586 GACGCGAATTCCATGTATAATCTTATA 57.702 33.333 15.93 0.00 0.00 0.98
269 270 9.647797 ACGCGAATTCCATGTATAATCTTATAA 57.352 29.630 15.93 0.00 0.00 0.98
270 271 9.901724 CGCGAATTCCATGTATAATCTTATAAC 57.098 33.333 0.00 0.00 0.00 1.89
323 324 9.734620 TTGTTGTCTAGTTTCTCATGAAATTTG 57.265 29.630 0.00 0.00 43.14 2.32
324 325 8.902806 TGTTGTCTAGTTTCTCATGAAATTTGT 58.097 29.630 0.00 0.00 43.14 2.83
327 328 9.778741 TGTCTAGTTTCTCATGAAATTTGTAGT 57.221 29.630 0.00 0.00 43.14 2.73
343 344 8.601845 AATTTGTAGTATTTTTGCAAAGACCC 57.398 30.769 12.41 2.42 35.08 4.46
344 345 6.716934 TTGTAGTATTTTTGCAAAGACCCA 57.283 33.333 12.41 8.77 35.08 4.51
345 346 6.716934 TGTAGTATTTTTGCAAAGACCCAA 57.283 33.333 12.41 3.80 35.08 4.12
346 347 7.113658 TGTAGTATTTTTGCAAAGACCCAAA 57.886 32.000 12.41 3.04 35.08 3.28
347 348 7.206687 TGTAGTATTTTTGCAAAGACCCAAAG 58.793 34.615 12.41 0.00 35.08 2.77
348 349 6.478512 AGTATTTTTGCAAAGACCCAAAGA 57.521 33.333 12.41 0.00 35.08 2.52
349 350 6.883744 AGTATTTTTGCAAAGACCCAAAGAA 58.116 32.000 12.41 0.78 35.08 2.52
350 351 7.508687 AGTATTTTTGCAAAGACCCAAAGAAT 58.491 30.769 12.41 8.34 35.08 2.40
351 352 6.622833 ATTTTTGCAAAGACCCAAAGAATG 57.377 33.333 12.41 0.00 33.07 2.67
352 353 5.350504 TTTTGCAAAGACCCAAAGAATGA 57.649 34.783 12.41 0.00 33.07 2.57
353 354 5.549742 TTTGCAAAGACCCAAAGAATGAT 57.450 34.783 8.05 0.00 0.00 2.45
354 355 5.549742 TTGCAAAGACCCAAAGAATGATT 57.450 34.783 0.00 0.00 0.00 2.57
355 356 5.549742 TGCAAAGACCCAAAGAATGATTT 57.450 34.783 0.00 0.00 0.00 2.17
356 357 5.299148 TGCAAAGACCCAAAGAATGATTTG 58.701 37.500 0.00 0.00 39.41 2.32
357 358 4.152938 GCAAAGACCCAAAGAATGATTTGC 59.847 41.667 3.88 3.88 42.81 3.68
358 359 5.544650 CAAAGACCCAAAGAATGATTTGCT 58.455 37.500 0.00 0.00 38.57 3.91
359 360 4.796038 AGACCCAAAGAATGATTTGCTG 57.204 40.909 0.00 0.00 38.57 4.41
360 361 4.154942 AGACCCAAAGAATGATTTGCTGT 58.845 39.130 0.00 0.00 38.57 4.40
361 362 4.219288 AGACCCAAAGAATGATTTGCTGTC 59.781 41.667 11.68 11.68 38.57 3.51
362 363 3.896888 ACCCAAAGAATGATTTGCTGTCA 59.103 39.130 0.00 0.00 38.57 3.58
363 364 4.021719 ACCCAAAGAATGATTTGCTGTCAG 60.022 41.667 0.00 0.00 38.57 3.51
364 365 4.021719 CCCAAAGAATGATTTGCTGTCAGT 60.022 41.667 0.93 0.00 38.57 3.41
365 366 5.183713 CCCAAAGAATGATTTGCTGTCAGTA 59.816 40.000 0.93 0.00 38.57 2.74
366 367 6.320171 CCAAAGAATGATTTGCTGTCAGTAG 58.680 40.000 0.93 0.00 38.57 2.57
367 368 6.320171 CAAAGAATGATTTGCTGTCAGTAGG 58.680 40.000 0.93 0.00 33.71 3.18
368 369 3.944015 AGAATGATTTGCTGTCAGTAGGC 59.056 43.478 0.93 0.00 0.00 3.93
369 370 2.857186 TGATTTGCTGTCAGTAGGCA 57.143 45.000 0.93 0.00 0.00 4.75
370 371 3.354948 TGATTTGCTGTCAGTAGGCAT 57.645 42.857 0.93 0.00 35.84 4.40
371 372 4.486125 TGATTTGCTGTCAGTAGGCATA 57.514 40.909 0.93 0.00 35.84 3.14
372 373 4.191544 TGATTTGCTGTCAGTAGGCATAC 58.808 43.478 0.00 0.00 35.84 2.39
373 374 3.981071 TTTGCTGTCAGTAGGCATACT 57.019 42.857 4.95 4.95 43.24 2.12
374 375 5.128663 TGATTTGCTGTCAGTAGGCATACTA 59.871 40.000 11.26 0.00 40.38 1.82
375 376 5.414789 TTTGCTGTCAGTAGGCATACTAA 57.585 39.130 11.26 0.00 40.38 2.24
376 377 4.655762 TGCTGTCAGTAGGCATACTAAG 57.344 45.455 11.26 10.18 40.38 2.18
377 378 3.384789 TGCTGTCAGTAGGCATACTAAGG 59.615 47.826 11.26 0.00 40.38 2.69
378 379 3.800604 GCTGTCAGTAGGCATACTAAGGC 60.801 52.174 11.26 9.48 40.38 4.35
386 387 2.990066 GCATACTAAGGCCACTCTGT 57.010 50.000 5.01 0.00 0.00 3.41
387 388 2.555199 GCATACTAAGGCCACTCTGTG 58.445 52.381 5.01 0.00 0.00 3.66
388 389 2.093447 GCATACTAAGGCCACTCTGTGT 60.093 50.000 5.01 0.00 0.00 3.72
389 390 3.525537 CATACTAAGGCCACTCTGTGTG 58.474 50.000 5.01 2.97 45.80 3.82
390 391 1.424638 ACTAAGGCCACTCTGTGTGT 58.575 50.000 5.01 0.00 44.81 3.72
391 392 1.070758 ACTAAGGCCACTCTGTGTGTG 59.929 52.381 5.01 2.48 44.81 3.82
392 393 1.070758 CTAAGGCCACTCTGTGTGTGT 59.929 52.381 5.01 0.00 44.81 3.72
393 394 1.128200 AAGGCCACTCTGTGTGTGTA 58.872 50.000 5.01 0.00 44.81 2.90
394 395 1.128200 AGGCCACTCTGTGTGTGTAA 58.872 50.000 5.01 0.00 44.81 2.41
395 396 1.699634 AGGCCACTCTGTGTGTGTAAT 59.300 47.619 5.01 0.00 44.81 1.89
396 397 2.106511 AGGCCACTCTGTGTGTGTAATT 59.893 45.455 5.01 0.00 44.81 1.40
397 398 2.484264 GGCCACTCTGTGTGTGTAATTC 59.516 50.000 0.00 0.00 44.81 2.17
398 399 3.403038 GCCACTCTGTGTGTGTAATTCT 58.597 45.455 8.81 0.00 44.81 2.40
399 400 3.187227 GCCACTCTGTGTGTGTAATTCTG 59.813 47.826 8.81 0.00 44.81 3.02
400 401 3.187227 CCACTCTGTGTGTGTAATTCTGC 59.813 47.826 8.81 0.00 44.81 4.26
401 402 3.809279 CACTCTGTGTGTGTAATTCTGCA 59.191 43.478 1.84 0.00 41.53 4.41
402 403 4.453478 CACTCTGTGTGTGTAATTCTGCAT 59.547 41.667 1.84 0.00 41.53 3.96
403 404 4.453478 ACTCTGTGTGTGTAATTCTGCATG 59.547 41.667 0.00 0.00 0.00 4.06
404 405 4.388485 TCTGTGTGTGTAATTCTGCATGT 58.612 39.130 0.00 0.00 0.00 3.21
405 406 5.546526 TCTGTGTGTGTAATTCTGCATGTA 58.453 37.500 0.00 0.00 0.00 2.29
406 407 6.172630 TCTGTGTGTGTAATTCTGCATGTAT 58.827 36.000 0.00 0.00 0.00 2.29
407 408 7.327214 TCTGTGTGTGTAATTCTGCATGTATA 58.673 34.615 0.00 0.00 0.00 1.47
408 409 7.986889 TCTGTGTGTGTAATTCTGCATGTATAT 59.013 33.333 0.00 0.00 0.00 0.86
409 410 7.918643 TGTGTGTGTAATTCTGCATGTATATG 58.081 34.615 0.00 0.00 37.36 1.78
410 411 7.012232 TGTGTGTGTAATTCTGCATGTATATGG 59.988 37.037 1.33 0.00 34.79 2.74
411 412 7.012327 GTGTGTGTAATTCTGCATGTATATGGT 59.988 37.037 1.33 0.00 34.79 3.55
412 413 7.226523 TGTGTGTAATTCTGCATGTATATGGTC 59.773 37.037 1.33 0.00 34.79 4.02
413 414 7.226523 GTGTGTAATTCTGCATGTATATGGTCA 59.773 37.037 1.33 0.00 34.79 4.02
414 415 7.938490 TGTGTAATTCTGCATGTATATGGTCAT 59.062 33.333 1.33 0.00 34.79 3.06
415 416 8.786898 GTGTAATTCTGCATGTATATGGTCATT 58.213 33.333 1.33 0.00 34.79 2.57
416 417 9.353431 TGTAATTCTGCATGTATATGGTCATTT 57.647 29.630 1.33 0.00 34.79 2.32
419 420 9.754382 AATTCTGCATGTATATGGTCATTTTTC 57.246 29.630 1.33 0.00 34.79 2.29
420 421 7.275888 TCTGCATGTATATGGTCATTTTTCC 57.724 36.000 1.33 0.00 34.79 3.13
421 422 7.062322 TCTGCATGTATATGGTCATTTTTCCT 58.938 34.615 1.33 0.00 34.79 3.36
422 423 7.229306 TCTGCATGTATATGGTCATTTTTCCTC 59.771 37.037 1.33 0.00 34.79 3.71
423 424 7.062322 TGCATGTATATGGTCATTTTTCCTCT 58.938 34.615 1.33 0.00 34.79 3.69
424 425 7.229306 TGCATGTATATGGTCATTTTTCCTCTC 59.771 37.037 1.33 0.00 34.79 3.20
425 426 7.571983 GCATGTATATGGTCATTTTTCCTCTCG 60.572 40.741 1.33 0.00 34.79 4.04
426 427 5.758296 TGTATATGGTCATTTTTCCTCTCGC 59.242 40.000 0.00 0.00 0.00 5.03
427 428 2.859165 TGGTCATTTTTCCTCTCGCT 57.141 45.000 0.00 0.00 0.00 4.93
428 429 2.699954 TGGTCATTTTTCCTCTCGCTC 58.300 47.619 0.00 0.00 0.00 5.03
429 430 2.303022 TGGTCATTTTTCCTCTCGCTCT 59.697 45.455 0.00 0.00 0.00 4.09
430 431 3.513912 TGGTCATTTTTCCTCTCGCTCTA 59.486 43.478 0.00 0.00 0.00 2.43
431 432 4.162320 TGGTCATTTTTCCTCTCGCTCTAT 59.838 41.667 0.00 0.00 0.00 1.98
432 433 5.119694 GGTCATTTTTCCTCTCGCTCTATT 58.880 41.667 0.00 0.00 0.00 1.73
433 434 5.235401 GGTCATTTTTCCTCTCGCTCTATTC 59.765 44.000 0.00 0.00 0.00 1.75
434 435 6.045955 GTCATTTTTCCTCTCGCTCTATTCT 58.954 40.000 0.00 0.00 0.00 2.40
435 436 6.536941 GTCATTTTTCCTCTCGCTCTATTCTT 59.463 38.462 0.00 0.00 0.00 2.52
436 437 6.758886 TCATTTTTCCTCTCGCTCTATTCTTC 59.241 38.462 0.00 0.00 0.00 2.87
437 438 5.661056 TTTTCCTCTCGCTCTATTCTTCA 57.339 39.130 0.00 0.00 0.00 3.02
438 439 5.860941 TTTCCTCTCGCTCTATTCTTCAT 57.139 39.130 0.00 0.00 0.00 2.57
439 440 5.860941 TTCCTCTCGCTCTATTCTTCATT 57.139 39.130 0.00 0.00 0.00 2.57
440 441 5.860941 TCCTCTCGCTCTATTCTTCATTT 57.139 39.130 0.00 0.00 0.00 2.32
441 442 6.227298 TCCTCTCGCTCTATTCTTCATTTT 57.773 37.500 0.00 0.00 0.00 1.82
442 443 7.348080 TCCTCTCGCTCTATTCTTCATTTTA 57.652 36.000 0.00 0.00 0.00 1.52
443 444 7.957002 TCCTCTCGCTCTATTCTTCATTTTAT 58.043 34.615 0.00 0.00 0.00 1.40
444 445 9.078990 TCCTCTCGCTCTATTCTTCATTTTATA 57.921 33.333 0.00 0.00 0.00 0.98
445 446 9.134734 CCTCTCGCTCTATTCTTCATTTTATAC 57.865 37.037 0.00 0.00 0.00 1.47
446 447 9.906660 CTCTCGCTCTATTCTTCATTTTATACT 57.093 33.333 0.00 0.00 0.00 2.12
511 512 8.480643 AAGTTGAAGAACTCTTATAATGGACG 57.519 34.615 0.00 0.00 41.87 4.79
512 513 7.837863 AGTTGAAGAACTCTTATAATGGACGA 58.162 34.615 0.00 0.00 38.01 4.20
513 514 7.760340 AGTTGAAGAACTCTTATAATGGACGAC 59.240 37.037 0.00 0.00 38.01 4.34
514 515 7.165460 TGAAGAACTCTTATAATGGACGACA 57.835 36.000 0.00 0.00 36.11 4.35
515 516 7.782049 TGAAGAACTCTTATAATGGACGACAT 58.218 34.615 0.00 0.00 37.63 3.06
516 517 8.258007 TGAAGAACTCTTATAATGGACGACATT 58.742 33.333 13.00 13.00 43.33 2.71
517 518 8.425577 AAGAACTCTTATAATGGACGACATTG 57.574 34.615 16.46 5.18 41.13 2.82
518 519 7.011482 AAGAACTCTTATAATGGACGACATTGC 59.989 37.037 16.46 0.00 41.13 3.56
523 524 2.555123 ATGGACGACATTGCACCAC 58.445 52.632 0.00 0.00 35.97 4.16
524 525 0.250684 ATGGACGACATTGCACCACA 60.251 50.000 0.00 0.00 35.97 4.17
525 526 0.464554 TGGACGACATTGCACCACAA 60.465 50.000 0.00 0.00 44.01 3.33
526 527 0.040425 GGACGACATTGCACCACAAC 60.040 55.000 0.00 0.00 42.27 3.32
527 528 0.040425 GACGACATTGCACCACAACC 60.040 55.000 0.00 0.00 42.27 3.77
528 529 0.749818 ACGACATTGCACCACAACCA 60.750 50.000 0.00 0.00 42.27 3.67
529 530 0.317770 CGACATTGCACCACAACCAC 60.318 55.000 0.00 0.00 42.27 4.16
530 531 0.743688 GACATTGCACCACAACCACA 59.256 50.000 0.00 0.00 42.27 4.17
531 532 0.746063 ACATTGCACCACAACCACAG 59.254 50.000 0.00 0.00 42.27 3.66
532 533 0.746063 CATTGCACCACAACCACAGT 59.254 50.000 0.00 0.00 42.27 3.55
533 534 0.746063 ATTGCACCACAACCACAGTG 59.254 50.000 0.00 0.00 42.27 3.66
534 535 0.610509 TTGCACCACAACCACAGTGT 60.611 50.000 0.00 0.00 35.24 3.55
535 536 1.029408 TGCACCACAACCACAGTGTC 61.029 55.000 0.00 0.00 35.24 3.67
536 537 1.029408 GCACCACAACCACAGTGTCA 61.029 55.000 0.00 0.00 35.24 3.58
537 538 1.016627 CACCACAACCACAGTGTCAG 58.983 55.000 0.00 0.00 35.24 3.51
538 539 0.107214 ACCACAACCACAGTGTCAGG 60.107 55.000 0.00 0.00 35.24 3.86
539 540 0.180171 CCACAACCACAGTGTCAGGA 59.820 55.000 6.64 0.00 35.24 3.86
540 541 1.299541 CACAACCACAGTGTCAGGAC 58.700 55.000 6.64 0.00 32.44 3.85
541 542 1.134401 CACAACCACAGTGTCAGGACT 60.134 52.381 6.64 0.00 32.44 3.85
542 543 1.559682 ACAACCACAGTGTCAGGACTT 59.440 47.619 6.64 0.00 0.00 3.01
543 544 2.213499 CAACCACAGTGTCAGGACTTC 58.787 52.381 6.64 0.00 0.00 3.01
544 545 0.389391 ACCACAGTGTCAGGACTTCG 59.611 55.000 6.64 0.00 0.00 3.79
545 546 0.673985 CCACAGTGTCAGGACTTCGA 59.326 55.000 0.00 0.00 0.00 3.71
546 547 1.603172 CCACAGTGTCAGGACTTCGAC 60.603 57.143 0.00 0.00 0.00 4.20
547 548 1.067060 CACAGTGTCAGGACTTCGACA 59.933 52.381 0.00 0.00 39.77 4.35
553 554 4.801330 TGTCAGGACTTCGACACAATAT 57.199 40.909 0.65 0.00 37.23 1.28
554 555 4.744570 TGTCAGGACTTCGACACAATATC 58.255 43.478 0.65 0.00 37.23 1.63
555 556 4.113354 GTCAGGACTTCGACACAATATCC 58.887 47.826 0.00 0.00 32.24 2.59
558 559 5.833667 TCAGGACTTCGACACAATATCCTAT 59.166 40.000 0.00 0.00 33.29 2.57
1505 1708 2.065899 TGGGCATTTGTAGGTATGGC 57.934 50.000 0.00 0.00 44.10 4.40
2045 2248 4.019792 TGAAAAATGTGCCTCAGCTCTA 57.980 40.909 0.00 0.00 40.80 2.43
2289 2492 9.601217 GGTATACATAGTGAGACTGTGAATTTT 57.399 33.333 5.01 0.00 39.34 1.82
2472 2730 5.479027 GGCACTTGGTTTAGGATTTAAAGGA 59.521 40.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.171903 GCGCAGTGGATTCAAAGCAT 59.828 50.000 0.30 0.00 0.00 3.79
12 13 1.580942 GCGCAGTGGATTCAAAGCA 59.419 52.632 0.30 0.00 0.00 3.91
13 14 1.512734 CGCGCAGTGGATTCAAAGC 60.513 57.895 8.75 0.00 0.00 3.51
14 15 1.512734 GCGCGCAGTGGATTCAAAG 60.513 57.895 29.10 0.00 39.19 2.77
15 16 2.560861 GCGCGCAGTGGATTCAAA 59.439 55.556 29.10 0.00 39.19 2.69
16 17 3.787676 CGCGCGCAGTGGATTCAA 61.788 61.111 32.61 0.00 39.19 2.69
17 18 2.621371 TATCGCGCGCAGTGGATTCA 62.621 55.000 32.61 8.42 39.19 2.57
18 19 1.949133 TATCGCGCGCAGTGGATTC 60.949 57.895 32.61 0.00 39.19 2.52
19 20 2.106131 TATCGCGCGCAGTGGATT 59.894 55.556 32.61 11.87 39.19 3.01
20 21 2.658593 GTATCGCGCGCAGTGGAT 60.659 61.111 32.61 25.52 39.19 3.41
21 22 4.865761 GGTATCGCGCGCAGTGGA 62.866 66.667 32.61 20.40 39.19 4.02
22 23 2.947118 TAAGGTATCGCGCGCAGTGG 62.947 60.000 32.61 15.11 39.19 4.00
23 24 0.939577 ATAAGGTATCGCGCGCAGTG 60.940 55.000 32.61 15.52 43.41 3.66
24 25 0.249322 AATAAGGTATCGCGCGCAGT 60.249 50.000 32.61 20.83 0.00 4.40
25 26 0.435008 GAATAAGGTATCGCGCGCAG 59.565 55.000 32.61 23.08 0.00 5.18
26 27 0.249114 TGAATAAGGTATCGCGCGCA 60.249 50.000 32.61 18.69 0.00 6.09
27 28 0.435008 CTGAATAAGGTATCGCGCGC 59.565 55.000 27.95 23.91 0.00 6.86
28 29 0.435008 GCTGAATAAGGTATCGCGCG 59.565 55.000 26.76 26.76 0.00 6.86
29 30 0.790814 GGCTGAATAAGGTATCGCGC 59.209 55.000 0.00 0.00 0.00 6.86
30 31 2.148916 TGGCTGAATAAGGTATCGCG 57.851 50.000 0.00 0.00 0.00 5.87
31 32 4.822026 ACTATGGCTGAATAAGGTATCGC 58.178 43.478 0.00 0.00 0.00 4.58
32 33 5.869888 GGAACTATGGCTGAATAAGGTATCG 59.130 44.000 0.00 0.00 0.00 2.92
33 34 6.769512 TGGAACTATGGCTGAATAAGGTATC 58.230 40.000 0.00 0.00 0.00 2.24
34 35 6.763715 TGGAACTATGGCTGAATAAGGTAT 57.236 37.500 0.00 0.00 0.00 2.73
35 36 6.385759 TCTTGGAACTATGGCTGAATAAGGTA 59.614 38.462 0.00 0.00 0.00 3.08
36 37 5.191722 TCTTGGAACTATGGCTGAATAAGGT 59.808 40.000 0.00 0.00 0.00 3.50
37 38 5.684704 TCTTGGAACTATGGCTGAATAAGG 58.315 41.667 0.00 0.00 0.00 2.69
38 39 7.554118 TCTTTCTTGGAACTATGGCTGAATAAG 59.446 37.037 0.00 0.00 0.00 1.73
39 40 7.402054 TCTTTCTTGGAACTATGGCTGAATAA 58.598 34.615 0.00 0.00 0.00 1.40
40 41 6.957631 TCTTTCTTGGAACTATGGCTGAATA 58.042 36.000 0.00 0.00 0.00 1.75
41 42 5.819991 TCTTTCTTGGAACTATGGCTGAAT 58.180 37.500 0.00 0.00 0.00 2.57
42 43 5.241403 TCTTTCTTGGAACTATGGCTGAA 57.759 39.130 0.00 0.00 0.00 3.02
43 44 4.908601 TCTTTCTTGGAACTATGGCTGA 57.091 40.909 0.00 0.00 0.00 4.26
44 45 4.397417 CCTTCTTTCTTGGAACTATGGCTG 59.603 45.833 0.00 0.00 0.00 4.85
45 46 4.289672 TCCTTCTTTCTTGGAACTATGGCT 59.710 41.667 0.00 0.00 0.00 4.75
46 47 4.589908 TCCTTCTTTCTTGGAACTATGGC 58.410 43.478 0.00 0.00 0.00 4.40
47 48 7.709149 AATTCCTTCTTTCTTGGAACTATGG 57.291 36.000 0.00 0.00 41.87 2.74
48 49 8.678199 GGTAATTCCTTCTTTCTTGGAACTATG 58.322 37.037 0.00 0.00 41.87 2.23
49 50 8.390921 TGGTAATTCCTTCTTTCTTGGAACTAT 58.609 33.333 0.00 0.00 41.87 2.12
50 51 7.751646 TGGTAATTCCTTCTTTCTTGGAACTA 58.248 34.615 0.00 0.00 41.87 2.24
51 52 6.610830 TGGTAATTCCTTCTTTCTTGGAACT 58.389 36.000 0.00 0.00 41.87 3.01
52 53 6.894339 TGGTAATTCCTTCTTTCTTGGAAC 57.106 37.500 0.00 0.00 41.87 3.62
53 54 6.016610 CGTTGGTAATTCCTTCTTTCTTGGAA 60.017 38.462 0.00 0.00 43.02 3.53
54 55 5.472137 CGTTGGTAATTCCTTCTTTCTTGGA 59.528 40.000 0.00 0.00 37.07 3.53
55 56 5.335661 CCGTTGGTAATTCCTTCTTTCTTGG 60.336 44.000 0.00 0.00 37.07 3.61
56 57 5.240844 ACCGTTGGTAATTCCTTCTTTCTTG 59.759 40.000 0.00 0.00 32.11 3.02
57 58 5.240844 CACCGTTGGTAATTCCTTCTTTCTT 59.759 40.000 0.00 0.00 32.11 2.52
58 59 4.760204 CACCGTTGGTAATTCCTTCTTTCT 59.240 41.667 0.00 0.00 32.11 2.52
59 60 4.758165 TCACCGTTGGTAATTCCTTCTTTC 59.242 41.667 0.00 0.00 32.11 2.62
60 61 4.517832 GTCACCGTTGGTAATTCCTTCTTT 59.482 41.667 0.00 0.00 32.11 2.52
61 62 4.070009 GTCACCGTTGGTAATTCCTTCTT 58.930 43.478 0.00 0.00 32.11 2.52
62 63 3.071892 TGTCACCGTTGGTAATTCCTTCT 59.928 43.478 0.00 0.00 32.11 2.85
63 64 3.187842 GTGTCACCGTTGGTAATTCCTTC 59.812 47.826 0.00 0.00 32.11 3.46
64 65 3.143728 GTGTCACCGTTGGTAATTCCTT 58.856 45.455 0.00 0.00 32.11 3.36
65 66 2.370849 AGTGTCACCGTTGGTAATTCCT 59.629 45.455 0.00 0.00 32.11 3.36
66 67 2.774687 AGTGTCACCGTTGGTAATTCC 58.225 47.619 0.00 0.00 32.11 3.01
67 68 3.058501 CCAAGTGTCACCGTTGGTAATTC 60.059 47.826 13.45 0.00 36.70 2.17
68 69 2.882137 CCAAGTGTCACCGTTGGTAATT 59.118 45.455 13.45 0.00 36.70 1.40
69 70 2.500229 CCAAGTGTCACCGTTGGTAAT 58.500 47.619 13.45 0.00 36.70 1.89
70 71 1.475392 CCCAAGTGTCACCGTTGGTAA 60.475 52.381 18.04 0.00 39.36 2.85
71 72 0.107081 CCCAAGTGTCACCGTTGGTA 59.893 55.000 18.04 0.00 39.36 3.25
72 73 1.153046 CCCAAGTGTCACCGTTGGT 60.153 57.895 18.04 0.00 39.36 3.67
73 74 1.896660 CCCCAAGTGTCACCGTTGG 60.897 63.158 14.35 14.35 40.49 3.77
74 75 1.147376 TCCCCAAGTGTCACCGTTG 59.853 57.895 0.00 0.00 0.00 4.10
75 76 1.147600 GTCCCCAAGTGTCACCGTT 59.852 57.895 0.00 0.00 0.00 4.44
76 77 2.814835 GGTCCCCAAGTGTCACCGT 61.815 63.158 0.00 0.00 0.00 4.83
77 78 2.032071 GGTCCCCAAGTGTCACCG 59.968 66.667 0.00 0.00 0.00 4.94
78 79 1.375326 GAGGTCCCCAAGTGTCACC 59.625 63.158 0.00 0.00 0.00 4.02
79 80 1.004918 CGAGGTCCCCAAGTGTCAC 60.005 63.158 0.00 0.00 0.00 3.67
80 81 1.458777 ACGAGGTCCCCAAGTGTCA 60.459 57.895 0.00 0.00 0.00 3.58
81 82 1.004918 CACGAGGTCCCCAAGTGTC 60.005 63.158 0.00 0.00 31.83 3.67
82 83 2.516888 CCACGAGGTCCCCAAGTGT 61.517 63.158 0.00 0.00 33.57 3.55
83 84 2.347490 CCACGAGGTCCCCAAGTG 59.653 66.667 0.00 0.00 34.60 3.16
84 85 3.637273 GCCACGAGGTCCCCAAGT 61.637 66.667 0.00 0.00 37.19 3.16
85 86 3.612247 CTGCCACGAGGTCCCCAAG 62.612 68.421 0.00 0.00 37.19 3.61
86 87 3.636231 CTGCCACGAGGTCCCCAA 61.636 66.667 0.00 0.00 37.19 4.12
87 88 3.924013 ATCTGCCACGAGGTCCCCA 62.924 63.158 0.00 0.00 37.19 4.96
88 89 3.083997 ATCTGCCACGAGGTCCCC 61.084 66.667 0.00 0.00 37.19 4.81
89 90 2.501610 GATCTGCCACGAGGTCCC 59.498 66.667 0.00 0.00 37.19 4.46
90 91 0.755698 TAGGATCTGCCACGAGGTCC 60.756 60.000 0.00 0.00 42.92 4.46
91 92 0.671251 CTAGGATCTGCCACGAGGTC 59.329 60.000 0.00 0.00 40.02 3.85
92 93 0.033011 ACTAGGATCTGCCACGAGGT 60.033 55.000 0.00 0.00 40.02 3.85
93 94 0.387202 CACTAGGATCTGCCACGAGG 59.613 60.000 0.00 0.00 40.02 4.63
94 95 1.107114 ACACTAGGATCTGCCACGAG 58.893 55.000 0.00 0.00 40.02 4.18
95 96 1.557099 AACACTAGGATCTGCCACGA 58.443 50.000 0.00 0.00 40.02 4.35
96 97 3.085443 CTAACACTAGGATCTGCCACG 57.915 52.381 0.00 0.00 40.02 4.94
102 103 7.106143 CCCTTTTGGCCTAACACTAGGATCT 62.106 48.000 14.71 0.00 45.92 2.75
103 104 4.927762 CCCTTTTGGCCTAACACTAGGATC 60.928 50.000 14.71 0.00 45.92 3.36
104 105 3.053619 CCCTTTTGGCCTAACACTAGGAT 60.054 47.826 14.71 0.00 45.92 3.24
105 106 2.307686 CCCTTTTGGCCTAACACTAGGA 59.692 50.000 14.71 0.00 45.92 2.94
106 107 2.620627 CCCCTTTTGGCCTAACACTAGG 60.621 54.545 3.32 6.35 46.85 3.02
107 108 2.307686 TCCCCTTTTGGCCTAACACTAG 59.692 50.000 3.32 0.00 38.58 2.57
108 109 2.307686 CTCCCCTTTTGGCCTAACACTA 59.692 50.000 3.32 0.00 38.58 2.74
109 110 1.075536 CTCCCCTTTTGGCCTAACACT 59.924 52.381 3.32 0.00 38.58 3.55
110 111 1.203013 ACTCCCCTTTTGGCCTAACAC 60.203 52.381 3.32 0.00 38.58 3.32
111 112 1.154430 ACTCCCCTTTTGGCCTAACA 58.846 50.000 3.32 0.00 38.58 2.41
112 113 2.168496 GAACTCCCCTTTTGGCCTAAC 58.832 52.381 3.32 0.00 38.58 2.34
113 114 1.783979 TGAACTCCCCTTTTGGCCTAA 59.216 47.619 3.32 0.00 38.58 2.69
114 115 1.451449 TGAACTCCCCTTTTGGCCTA 58.549 50.000 3.32 0.00 38.58 3.93
115 116 0.560688 TTGAACTCCCCTTTTGGCCT 59.439 50.000 3.32 0.00 38.58 5.19
116 117 1.644509 ATTGAACTCCCCTTTTGGCC 58.355 50.000 0.00 0.00 38.58 5.36
117 118 3.769739 AAATTGAACTCCCCTTTTGGC 57.230 42.857 0.00 0.00 38.58 4.52
118 119 5.538433 TCACTAAATTGAACTCCCCTTTTGG 59.462 40.000 0.00 0.00 39.97 3.28
119 120 6.040391 TGTCACTAAATTGAACTCCCCTTTTG 59.960 38.462 0.00 0.00 0.00 2.44
120 121 6.133356 TGTCACTAAATTGAACTCCCCTTTT 58.867 36.000 0.00 0.00 0.00 2.27
121 122 5.701224 TGTCACTAAATTGAACTCCCCTTT 58.299 37.500 0.00 0.00 0.00 3.11
122 123 5.319043 TGTCACTAAATTGAACTCCCCTT 57.681 39.130 0.00 0.00 0.00 3.95
123 124 4.993705 TGTCACTAAATTGAACTCCCCT 57.006 40.909 0.00 0.00 0.00 4.79
124 125 4.399303 CCATGTCACTAAATTGAACTCCCC 59.601 45.833 0.00 0.00 0.00 4.81
125 126 4.399303 CCCATGTCACTAAATTGAACTCCC 59.601 45.833 0.00 0.00 0.00 4.30
126 127 5.253330 TCCCATGTCACTAAATTGAACTCC 58.747 41.667 0.00 0.00 0.00 3.85
127 128 6.817765 TTCCCATGTCACTAAATTGAACTC 57.182 37.500 0.00 0.00 0.00 3.01
128 129 6.947733 TGATTCCCATGTCACTAAATTGAACT 59.052 34.615 0.00 0.00 0.00 3.01
129 130 7.156876 TGATTCCCATGTCACTAAATTGAAC 57.843 36.000 0.00 0.00 0.00 3.18
130 131 7.093814 CCTTGATTCCCATGTCACTAAATTGAA 60.094 37.037 0.00 0.00 0.00 2.69
131 132 6.377996 CCTTGATTCCCATGTCACTAAATTGA 59.622 38.462 0.00 0.00 0.00 2.57
132 133 6.377996 TCCTTGATTCCCATGTCACTAAATTG 59.622 38.462 0.00 0.00 0.00 2.32
133 134 6.493166 TCCTTGATTCCCATGTCACTAAATT 58.507 36.000 0.00 0.00 0.00 1.82
134 135 6.078456 TCCTTGATTCCCATGTCACTAAAT 57.922 37.500 0.00 0.00 0.00 1.40
135 136 5.512942 TCCTTGATTCCCATGTCACTAAA 57.487 39.130 0.00 0.00 0.00 1.85
136 137 5.715439 ATCCTTGATTCCCATGTCACTAA 57.285 39.130 0.00 0.00 0.00 2.24
137 138 5.684704 GAATCCTTGATTCCCATGTCACTA 58.315 41.667 5.68 0.00 41.59 2.74
138 139 4.530875 GAATCCTTGATTCCCATGTCACT 58.469 43.478 5.68 0.00 41.59 3.41
139 140 4.907879 GAATCCTTGATTCCCATGTCAC 57.092 45.455 5.68 0.00 41.59 3.67
154 155 3.433740 GCGGAATTGTAAGGAGGAATCCT 60.434 47.826 0.00 0.00 43.04 3.24
155 156 2.879026 GCGGAATTGTAAGGAGGAATCC 59.121 50.000 0.00 0.00 0.00 3.01
156 157 3.541632 TGCGGAATTGTAAGGAGGAATC 58.458 45.455 0.00 0.00 0.00 2.52
157 158 3.644966 TGCGGAATTGTAAGGAGGAAT 57.355 42.857 0.00 0.00 0.00 3.01
158 159 3.199946 AGATGCGGAATTGTAAGGAGGAA 59.800 43.478 0.00 0.00 0.00 3.36
159 160 2.771943 AGATGCGGAATTGTAAGGAGGA 59.228 45.455 0.00 0.00 0.00 3.71
160 161 3.199880 AGATGCGGAATTGTAAGGAGG 57.800 47.619 0.00 0.00 0.00 4.30
161 162 5.360591 AGTAAGATGCGGAATTGTAAGGAG 58.639 41.667 0.00 0.00 0.00 3.69
162 163 5.353394 AGTAAGATGCGGAATTGTAAGGA 57.647 39.130 0.00 0.00 0.00 3.36
163 164 6.128007 ACAAAGTAAGATGCGGAATTGTAAGG 60.128 38.462 0.00 0.00 0.00 2.69
164 165 6.842163 ACAAAGTAAGATGCGGAATTGTAAG 58.158 36.000 0.00 0.00 0.00 2.34
165 166 6.811253 ACAAAGTAAGATGCGGAATTGTAA 57.189 33.333 0.00 0.00 0.00 2.41
166 167 6.128117 GGAACAAAGTAAGATGCGGAATTGTA 60.128 38.462 0.00 0.00 0.00 2.41
167 168 5.335661 GGAACAAAGTAAGATGCGGAATTGT 60.336 40.000 0.00 0.00 0.00 2.71
168 169 5.095490 GGAACAAAGTAAGATGCGGAATTG 58.905 41.667 0.00 0.00 0.00 2.32
169 170 4.764823 TGGAACAAAGTAAGATGCGGAATT 59.235 37.500 0.00 0.00 31.92 2.17
170 171 4.331968 TGGAACAAAGTAAGATGCGGAAT 58.668 39.130 0.00 0.00 31.92 3.01
171 172 3.745799 TGGAACAAAGTAAGATGCGGAA 58.254 40.909 0.00 0.00 31.92 4.30
172 173 3.007506 TCTGGAACAAAGTAAGATGCGGA 59.992 43.478 0.00 0.00 38.70 5.54
173 174 3.125316 GTCTGGAACAAAGTAAGATGCGG 59.875 47.826 0.00 0.00 38.70 5.69
174 175 3.997021 AGTCTGGAACAAAGTAAGATGCG 59.003 43.478 0.00 0.00 38.70 4.73
175 176 4.154918 CCAGTCTGGAACAAAGTAAGATGC 59.845 45.833 14.26 0.00 40.96 3.91
176 177 4.697352 CCCAGTCTGGAACAAAGTAAGATG 59.303 45.833 21.23 0.00 40.96 2.90
177 178 4.351111 ACCCAGTCTGGAACAAAGTAAGAT 59.649 41.667 21.23 0.00 40.96 2.40
178 179 3.714798 ACCCAGTCTGGAACAAAGTAAGA 59.285 43.478 21.23 0.00 40.96 2.10
179 180 4.086706 ACCCAGTCTGGAACAAAGTAAG 57.913 45.455 21.23 1.73 40.96 2.34
180 181 4.080243 TGAACCCAGTCTGGAACAAAGTAA 60.080 41.667 21.23 0.00 40.96 2.24
181 182 3.456644 TGAACCCAGTCTGGAACAAAGTA 59.543 43.478 21.23 0.00 40.96 2.24
182 183 2.241176 TGAACCCAGTCTGGAACAAAGT 59.759 45.455 21.23 5.42 40.96 2.66
183 184 2.880890 CTGAACCCAGTCTGGAACAAAG 59.119 50.000 21.23 4.74 40.96 2.77
184 185 2.422803 CCTGAACCCAGTCTGGAACAAA 60.423 50.000 21.23 1.09 40.96 2.83
185 186 1.142870 CCTGAACCCAGTCTGGAACAA 59.857 52.381 21.23 2.51 40.96 2.83
186 187 0.764890 CCTGAACCCAGTCTGGAACA 59.235 55.000 21.23 14.69 40.96 3.18
187 188 1.056660 TCCTGAACCCAGTCTGGAAC 58.943 55.000 21.23 11.04 40.96 3.62
188 189 2.044793 ATCCTGAACCCAGTCTGGAA 57.955 50.000 21.23 2.15 45.47 3.53
189 190 2.940514 TATCCTGAACCCAGTCTGGA 57.059 50.000 21.23 4.25 46.13 3.86
190 191 2.486191 GCATATCCTGAACCCAGTCTGG 60.486 54.545 12.40 12.40 38.74 3.86
191 192 2.437281 AGCATATCCTGAACCCAGTCTG 59.563 50.000 0.00 0.00 38.74 3.51
192 193 2.769209 AGCATATCCTGAACCCAGTCT 58.231 47.619 0.00 0.00 38.74 3.24
193 194 3.118261 TCAAGCATATCCTGAACCCAGTC 60.118 47.826 0.00 0.00 38.74 3.51
194 195 2.846206 TCAAGCATATCCTGAACCCAGT 59.154 45.455 0.00 0.00 38.74 4.00
195 196 3.565764 TCAAGCATATCCTGAACCCAG 57.434 47.619 0.00 0.00 40.09 4.45
196 197 3.371917 CCTTCAAGCATATCCTGAACCCA 60.372 47.826 0.00 0.00 0.00 4.51
197 198 3.217626 CCTTCAAGCATATCCTGAACCC 58.782 50.000 0.00 0.00 0.00 4.11
198 199 3.891049 ACCTTCAAGCATATCCTGAACC 58.109 45.455 0.00 0.00 0.00 3.62
199 200 4.816925 GGTACCTTCAAGCATATCCTGAAC 59.183 45.833 4.06 0.00 0.00 3.18
200 201 5.036117 GGTACCTTCAAGCATATCCTGAA 57.964 43.478 4.06 0.00 0.00 3.02
201 202 4.689612 GGTACCTTCAAGCATATCCTGA 57.310 45.455 4.06 0.00 0.00 3.86
218 219 0.253327 CCTCCTTGGCAAGAGGGTAC 59.747 60.000 28.18 0.00 34.93 3.34
219 220 0.118346 TCCTCCTTGGCAAGAGGGTA 59.882 55.000 29.22 17.58 35.63 3.69
220 221 0.772124 TTCCTCCTTGGCAAGAGGGT 60.772 55.000 29.22 0.00 35.63 4.34
221 222 0.034670 CTTCCTCCTTGGCAAGAGGG 60.035 60.000 29.22 26.40 35.63 4.30
222 223 0.679321 GCTTCCTCCTTGGCAAGAGG 60.679 60.000 28.18 27.19 36.22 3.69
223 224 1.023513 CGCTTCCTCCTTGGCAAGAG 61.024 60.000 28.18 20.67 35.26 2.85
224 225 1.003355 CGCTTCCTCCTTGGCAAGA 60.003 57.895 28.18 13.12 35.26 3.02
225 226 1.003355 TCGCTTCCTCCTTGGCAAG 60.003 57.895 20.31 20.31 35.26 4.01
226 227 1.302511 GTCGCTTCCTCCTTGGCAA 60.303 57.895 0.00 0.00 35.26 4.52
227 228 2.347490 GTCGCTTCCTCCTTGGCA 59.653 61.111 0.00 0.00 35.26 4.92
228 229 2.815647 CGTCGCTTCCTCCTTGGC 60.816 66.667 0.00 0.00 35.26 4.52
229 230 2.815647 GCGTCGCTTCCTCCTTGG 60.816 66.667 10.68 0.00 37.10 3.61
230 231 3.181967 CGCGTCGCTTCCTCCTTG 61.182 66.667 16.36 0.00 0.00 3.61
231 232 2.227089 ATTCGCGTCGCTTCCTCCTT 62.227 55.000 16.36 0.00 0.00 3.36
232 233 2.227089 AATTCGCGTCGCTTCCTCCT 62.227 55.000 16.36 0.00 0.00 3.69
233 234 1.753468 GAATTCGCGTCGCTTCCTCC 61.753 60.000 16.36 0.00 0.00 4.30
234 235 1.631595 GAATTCGCGTCGCTTCCTC 59.368 57.895 16.36 3.21 0.00 3.71
235 236 1.810030 GGAATTCGCGTCGCTTCCT 60.810 57.895 22.71 4.35 36.34 3.36
236 237 1.429148 ATGGAATTCGCGTCGCTTCC 61.429 55.000 23.04 23.04 38.19 3.46
237 238 0.315382 CATGGAATTCGCGTCGCTTC 60.315 55.000 16.36 12.02 0.00 3.86
238 239 1.019278 ACATGGAATTCGCGTCGCTT 61.019 50.000 16.36 2.37 0.00 4.68
239 240 0.179121 TACATGGAATTCGCGTCGCT 60.179 50.000 16.36 0.00 0.00 4.93
240 241 0.859232 ATACATGGAATTCGCGTCGC 59.141 50.000 7.29 7.29 0.00 5.19
241 242 4.621460 AGATTATACATGGAATTCGCGTCG 59.379 41.667 5.77 0.00 0.00 5.12
242 243 6.467723 AAGATTATACATGGAATTCGCGTC 57.532 37.500 5.77 0.00 0.00 5.19
243 244 9.647797 TTATAAGATTATACATGGAATTCGCGT 57.352 29.630 5.77 0.00 0.00 6.01
244 245 9.901724 GTTATAAGATTATACATGGAATTCGCG 57.098 33.333 0.00 0.00 0.00 5.87
297 298 9.734620 CAAATTTCATGAGAAACTAGACAACAA 57.265 29.630 0.00 0.00 45.79 2.83
298 299 8.902806 ACAAATTTCATGAGAAACTAGACAACA 58.097 29.630 0.00 0.00 45.79 3.33
301 302 9.778741 ACTACAAATTTCATGAGAAACTAGACA 57.221 29.630 0.00 0.00 45.79 3.41
317 318 9.051679 GGGTCTTTGCAAAAATACTACAAATTT 57.948 29.630 13.84 0.00 30.52 1.82
318 319 8.207545 TGGGTCTTTGCAAAAATACTACAAATT 58.792 29.630 13.84 0.00 30.52 1.82
319 320 7.731054 TGGGTCTTTGCAAAAATACTACAAAT 58.269 30.769 13.84 0.00 30.52 2.32
320 321 7.113658 TGGGTCTTTGCAAAAATACTACAAA 57.886 32.000 13.84 0.00 0.00 2.83
321 322 6.716934 TGGGTCTTTGCAAAAATACTACAA 57.283 33.333 13.84 0.00 0.00 2.41
322 323 6.716934 TTGGGTCTTTGCAAAAATACTACA 57.283 33.333 13.84 11.40 0.00 2.74
323 324 7.430441 TCTTTGGGTCTTTGCAAAAATACTAC 58.570 34.615 13.84 9.37 0.00 2.73
324 325 7.589958 TCTTTGGGTCTTTGCAAAAATACTA 57.410 32.000 13.84 0.00 0.00 1.82
325 326 6.478512 TCTTTGGGTCTTTGCAAAAATACT 57.521 33.333 13.84 0.00 0.00 2.12
326 327 7.440856 TCATTCTTTGGGTCTTTGCAAAAATAC 59.559 33.333 13.84 11.21 0.00 1.89
327 328 7.504403 TCATTCTTTGGGTCTTTGCAAAAATA 58.496 30.769 13.84 0.00 0.00 1.40
328 329 6.355747 TCATTCTTTGGGTCTTTGCAAAAAT 58.644 32.000 13.84 3.88 0.00 1.82
329 330 5.738909 TCATTCTTTGGGTCTTTGCAAAAA 58.261 33.333 13.84 0.00 0.00 1.94
330 331 5.350504 TCATTCTTTGGGTCTTTGCAAAA 57.649 34.783 13.84 1.75 0.00 2.44
331 332 5.549742 ATCATTCTTTGGGTCTTTGCAAA 57.450 34.783 12.14 12.14 0.00 3.68
332 333 5.549742 AATCATTCTTTGGGTCTTTGCAA 57.450 34.783 0.00 0.00 0.00 4.08
333 334 5.299148 CAAATCATTCTTTGGGTCTTTGCA 58.701 37.500 0.00 0.00 33.42 4.08
334 335 4.152938 GCAAATCATTCTTTGGGTCTTTGC 59.847 41.667 0.00 0.00 40.00 3.68
335 336 5.407387 CAGCAAATCATTCTTTGGGTCTTTG 59.593 40.000 0.00 0.00 36.76 2.77
336 337 5.070847 ACAGCAAATCATTCTTTGGGTCTTT 59.929 36.000 0.00 0.00 36.76 2.52
337 338 4.590222 ACAGCAAATCATTCTTTGGGTCTT 59.410 37.500 0.00 0.00 36.76 3.01
338 339 4.154942 ACAGCAAATCATTCTTTGGGTCT 58.845 39.130 0.00 0.00 36.76 3.85
339 340 4.022068 TGACAGCAAATCATTCTTTGGGTC 60.022 41.667 0.00 0.00 36.76 4.46
340 341 3.896888 TGACAGCAAATCATTCTTTGGGT 59.103 39.130 0.00 0.00 36.76 4.51
341 342 4.021719 ACTGACAGCAAATCATTCTTTGGG 60.022 41.667 1.25 0.00 36.76 4.12
342 343 5.130292 ACTGACAGCAAATCATTCTTTGG 57.870 39.130 1.25 0.00 36.76 3.28
343 344 6.320171 CCTACTGACAGCAAATCATTCTTTG 58.680 40.000 1.25 0.00 38.79 2.77
344 345 5.105997 GCCTACTGACAGCAAATCATTCTTT 60.106 40.000 1.25 0.00 0.00 2.52
345 346 4.397417 GCCTACTGACAGCAAATCATTCTT 59.603 41.667 1.25 0.00 0.00 2.52
346 347 3.944015 GCCTACTGACAGCAAATCATTCT 59.056 43.478 1.25 0.00 0.00 2.40
347 348 3.691118 TGCCTACTGACAGCAAATCATTC 59.309 43.478 1.25 0.00 32.56 2.67
348 349 3.689347 TGCCTACTGACAGCAAATCATT 58.311 40.909 1.25 0.00 32.56 2.57
349 350 3.354948 TGCCTACTGACAGCAAATCAT 57.645 42.857 1.25 0.00 32.56 2.45
350 351 2.857186 TGCCTACTGACAGCAAATCA 57.143 45.000 1.25 0.00 32.56 2.57
351 352 4.446371 AGTATGCCTACTGACAGCAAATC 58.554 43.478 1.25 0.00 40.46 2.17
352 353 4.494091 AGTATGCCTACTGACAGCAAAT 57.506 40.909 1.25 0.00 40.46 2.32
353 354 3.981071 AGTATGCCTACTGACAGCAAA 57.019 42.857 1.25 0.00 40.46 3.68
354 355 4.141937 CCTTAGTATGCCTACTGACAGCAA 60.142 45.833 11.50 0.00 40.46 3.91
355 356 3.384789 CCTTAGTATGCCTACTGACAGCA 59.615 47.826 11.50 0.00 38.65 4.41
356 357 3.800604 GCCTTAGTATGCCTACTGACAGC 60.801 52.174 11.50 5.91 38.65 4.40
357 358 3.243907 GGCCTTAGTATGCCTACTGACAG 60.244 52.174 11.50 0.00 44.46 3.51
358 359 2.698797 GGCCTTAGTATGCCTACTGACA 59.301 50.000 11.50 0.00 44.46 3.58
359 360 3.388345 GGCCTTAGTATGCCTACTGAC 57.612 52.381 11.50 0.00 44.46 3.51
367 368 2.093447 ACACAGAGTGGCCTTAGTATGC 60.093 50.000 3.32 0.00 37.94 3.14
368 369 3.525537 CACACAGAGTGGCCTTAGTATG 58.474 50.000 3.32 0.00 44.69 2.39
369 370 3.895232 CACACAGAGTGGCCTTAGTAT 57.105 47.619 3.32 0.00 44.69 2.12
380 381 4.071961 TGCAGAATTACACACACAGAGT 57.928 40.909 0.00 0.00 0.00 3.24
381 382 4.453478 ACATGCAGAATTACACACACAGAG 59.547 41.667 0.00 0.00 0.00 3.35
382 383 4.388485 ACATGCAGAATTACACACACAGA 58.612 39.130 0.00 0.00 0.00 3.41
383 384 4.754372 ACATGCAGAATTACACACACAG 57.246 40.909 0.00 0.00 0.00 3.66
384 385 7.012232 CCATATACATGCAGAATTACACACACA 59.988 37.037 0.00 0.00 0.00 3.72
385 386 7.012327 ACCATATACATGCAGAATTACACACAC 59.988 37.037 0.00 0.00 0.00 3.82
386 387 7.053498 ACCATATACATGCAGAATTACACACA 58.947 34.615 0.00 0.00 0.00 3.72
387 388 7.226523 TGACCATATACATGCAGAATTACACAC 59.773 37.037 0.00 0.00 0.00 3.82
388 389 7.278875 TGACCATATACATGCAGAATTACACA 58.721 34.615 0.00 0.00 0.00 3.72
389 390 7.728847 TGACCATATACATGCAGAATTACAC 57.271 36.000 0.00 0.00 0.00 2.90
390 391 8.922931 AATGACCATATACATGCAGAATTACA 57.077 30.769 0.00 0.00 0.00 2.41
393 394 9.754382 GAAAAATGACCATATACATGCAGAATT 57.246 29.630 0.00 0.00 0.00 2.17
394 395 8.362639 GGAAAAATGACCATATACATGCAGAAT 58.637 33.333 0.00 0.00 0.00 2.40
395 396 7.560991 AGGAAAAATGACCATATACATGCAGAA 59.439 33.333 0.00 0.00 0.00 3.02
396 397 7.062322 AGGAAAAATGACCATATACATGCAGA 58.938 34.615 0.00 0.00 0.00 4.26
397 398 7.230108 AGAGGAAAAATGACCATATACATGCAG 59.770 37.037 0.00 0.00 0.00 4.41
398 399 7.062322 AGAGGAAAAATGACCATATACATGCA 58.938 34.615 0.00 0.00 0.00 3.96
399 400 7.516198 AGAGGAAAAATGACCATATACATGC 57.484 36.000 0.00 0.00 0.00 4.06
400 401 7.571983 GCGAGAGGAAAAATGACCATATACATG 60.572 40.741 0.00 0.00 0.00 3.21
401 402 6.428159 GCGAGAGGAAAAATGACCATATACAT 59.572 38.462 0.00 0.00 0.00 2.29
402 403 5.758296 GCGAGAGGAAAAATGACCATATACA 59.242 40.000 0.00 0.00 0.00 2.29
403 404 5.992217 AGCGAGAGGAAAAATGACCATATAC 59.008 40.000 0.00 0.00 0.00 1.47
404 405 6.042093 AGAGCGAGAGGAAAAATGACCATATA 59.958 38.462 0.00 0.00 0.00 0.86
405 406 5.041191 AGCGAGAGGAAAAATGACCATAT 57.959 39.130 0.00 0.00 0.00 1.78
406 407 4.162320 AGAGCGAGAGGAAAAATGACCATA 59.838 41.667 0.00 0.00 0.00 2.74
407 408 3.054802 AGAGCGAGAGGAAAAATGACCAT 60.055 43.478 0.00 0.00 0.00 3.55
408 409 2.303022 AGAGCGAGAGGAAAAATGACCA 59.697 45.455 0.00 0.00 0.00 4.02
409 410 2.979240 AGAGCGAGAGGAAAAATGACC 58.021 47.619 0.00 0.00 0.00 4.02
410 411 6.045955 AGAATAGAGCGAGAGGAAAAATGAC 58.954 40.000 0.00 0.00 0.00 3.06
411 412 6.227298 AGAATAGAGCGAGAGGAAAAATGA 57.773 37.500 0.00 0.00 0.00 2.57
412 413 6.536582 TGAAGAATAGAGCGAGAGGAAAAATG 59.463 38.462 0.00 0.00 0.00 2.32
413 414 6.644347 TGAAGAATAGAGCGAGAGGAAAAAT 58.356 36.000 0.00 0.00 0.00 1.82
414 415 6.037786 TGAAGAATAGAGCGAGAGGAAAAA 57.962 37.500 0.00 0.00 0.00 1.94
415 416 5.661056 TGAAGAATAGAGCGAGAGGAAAA 57.339 39.130 0.00 0.00 0.00 2.29
416 417 5.860941 ATGAAGAATAGAGCGAGAGGAAA 57.139 39.130 0.00 0.00 0.00 3.13
417 418 5.860941 AATGAAGAATAGAGCGAGAGGAA 57.139 39.130 0.00 0.00 0.00 3.36
418 419 5.860941 AAATGAAGAATAGAGCGAGAGGA 57.139 39.130 0.00 0.00 0.00 3.71
419 420 9.134734 GTATAAAATGAAGAATAGAGCGAGAGG 57.865 37.037 0.00 0.00 0.00 3.69
420 421 9.906660 AGTATAAAATGAAGAATAGAGCGAGAG 57.093 33.333 0.00 0.00 0.00 3.20
485 486 8.936864 CGTCCATTATAAGAGTTCTTCAACTTT 58.063 33.333 0.00 0.00 43.37 2.66
486 487 8.311836 TCGTCCATTATAAGAGTTCTTCAACTT 58.688 33.333 0.00 0.00 43.37 2.66
487 488 7.760340 GTCGTCCATTATAAGAGTTCTTCAACT 59.240 37.037 0.00 0.00 46.21 3.16
488 489 7.544566 TGTCGTCCATTATAAGAGTTCTTCAAC 59.455 37.037 0.00 0.00 37.40 3.18
489 490 7.608153 TGTCGTCCATTATAAGAGTTCTTCAA 58.392 34.615 0.00 0.00 37.40 2.69
490 491 7.165460 TGTCGTCCATTATAAGAGTTCTTCA 57.835 36.000 0.00 0.00 37.40 3.02
491 492 8.543774 CAATGTCGTCCATTATAAGAGTTCTTC 58.456 37.037 0.00 0.00 41.93 2.87
492 493 7.011482 GCAATGTCGTCCATTATAAGAGTTCTT 59.989 37.037 0.00 0.00 41.93 2.52
493 494 6.480320 GCAATGTCGTCCATTATAAGAGTTCT 59.520 38.462 3.41 0.00 41.93 3.01
494 495 6.257849 TGCAATGTCGTCCATTATAAGAGTTC 59.742 38.462 3.41 0.00 41.93 3.01
495 496 6.037172 GTGCAATGTCGTCCATTATAAGAGTT 59.963 38.462 0.00 0.00 41.93 3.01
496 497 5.523916 GTGCAATGTCGTCCATTATAAGAGT 59.476 40.000 0.00 0.00 41.93 3.24
497 498 5.050091 GGTGCAATGTCGTCCATTATAAGAG 60.050 44.000 0.00 0.00 41.93 2.85
498 499 4.814234 GGTGCAATGTCGTCCATTATAAGA 59.186 41.667 0.00 0.00 41.93 2.10
499 500 4.574421 TGGTGCAATGTCGTCCATTATAAG 59.426 41.667 0.00 0.00 41.93 1.73
500 501 4.334203 GTGGTGCAATGTCGTCCATTATAA 59.666 41.667 0.00 0.00 41.93 0.98
501 502 3.874543 GTGGTGCAATGTCGTCCATTATA 59.125 43.478 0.00 0.00 41.93 0.98
502 503 2.682856 GTGGTGCAATGTCGTCCATTAT 59.317 45.455 0.00 0.00 41.93 1.28
503 504 2.080693 GTGGTGCAATGTCGTCCATTA 58.919 47.619 0.00 0.00 41.93 1.90
504 505 0.881118 GTGGTGCAATGTCGTCCATT 59.119 50.000 0.00 0.00 44.73 3.16
505 506 0.250684 TGTGGTGCAATGTCGTCCAT 60.251 50.000 0.00 0.00 34.36 3.41
506 507 0.464554 TTGTGGTGCAATGTCGTCCA 60.465 50.000 0.00 0.00 31.07 4.02
507 508 0.040425 GTTGTGGTGCAATGTCGTCC 60.040 55.000 0.00 0.00 39.55 4.79
508 509 0.040425 GGTTGTGGTGCAATGTCGTC 60.040 55.000 0.00 0.00 39.55 4.20
509 510 0.749818 TGGTTGTGGTGCAATGTCGT 60.750 50.000 0.00 0.00 39.55 4.34
510 511 0.317770 GTGGTTGTGGTGCAATGTCG 60.318 55.000 0.00 0.00 39.55 4.35
511 512 0.743688 TGTGGTTGTGGTGCAATGTC 59.256 50.000 0.00 0.00 39.55 3.06
512 513 0.746063 CTGTGGTTGTGGTGCAATGT 59.254 50.000 0.00 0.00 39.55 2.71
513 514 0.746063 ACTGTGGTTGTGGTGCAATG 59.254 50.000 0.00 0.00 39.55 2.82
514 515 0.746063 CACTGTGGTTGTGGTGCAAT 59.254 50.000 0.00 0.00 39.55 3.56
515 516 0.610509 ACACTGTGGTTGTGGTGCAA 60.611 50.000 13.09 0.00 39.52 4.08
516 517 1.001517 ACACTGTGGTTGTGGTGCA 60.002 52.632 13.09 0.00 39.52 4.57
517 518 1.029408 TGACACTGTGGTTGTGGTGC 61.029 55.000 13.09 0.00 39.52 5.01
518 519 1.016627 CTGACACTGTGGTTGTGGTG 58.983 55.000 13.09 0.00 39.52 4.17
519 520 0.107214 CCTGACACTGTGGTTGTGGT 60.107 55.000 13.09 0.00 39.52 4.16
520 521 0.180171 TCCTGACACTGTGGTTGTGG 59.820 55.000 13.09 6.94 39.52 4.17
521 522 1.134401 AGTCCTGACACTGTGGTTGTG 60.134 52.381 13.09 0.00 40.87 3.33
522 523 1.204146 AGTCCTGACACTGTGGTTGT 58.796 50.000 13.09 0.00 0.00 3.32
523 524 2.213499 GAAGTCCTGACACTGTGGTTG 58.787 52.381 13.09 1.31 0.00 3.77
524 525 1.202533 CGAAGTCCTGACACTGTGGTT 60.203 52.381 13.09 0.00 0.00 3.67
525 526 0.389391 CGAAGTCCTGACACTGTGGT 59.611 55.000 13.09 0.00 0.00 4.16
526 527 0.673985 TCGAAGTCCTGACACTGTGG 59.326 55.000 13.09 0.00 0.00 4.17
527 528 1.067060 TGTCGAAGTCCTGACACTGTG 59.933 52.381 6.19 6.19 40.02 3.66
528 529 1.399714 TGTCGAAGTCCTGACACTGT 58.600 50.000 0.00 0.00 40.02 3.55
532 533 4.381612 GGATATTGTGTCGAAGTCCTGACA 60.382 45.833 0.00 0.00 42.49 3.58
533 534 4.113354 GGATATTGTGTCGAAGTCCTGAC 58.887 47.826 0.00 0.00 35.67 3.51
534 535 4.023980 AGGATATTGTGTCGAAGTCCTGA 58.976 43.478 0.00 0.00 33.59 3.86
535 536 4.392921 AGGATATTGTGTCGAAGTCCTG 57.607 45.455 0.00 0.00 33.59 3.86
536 537 5.833667 TCATAGGATATTGTGTCGAAGTCCT 59.166 40.000 0.00 0.00 38.17 3.85
537 538 6.085555 TCATAGGATATTGTGTCGAAGTCC 57.914 41.667 0.00 0.00 0.00 3.85
538 539 6.740110 ACTCATAGGATATTGTGTCGAAGTC 58.260 40.000 0.00 0.00 0.00 3.01
539 540 6.716934 ACTCATAGGATATTGTGTCGAAGT 57.283 37.500 0.00 0.00 0.00 3.01
566 567 7.109501 GGCAAAAGGATAATTAACCCAAACAT 58.890 34.615 8.09 0.00 0.00 2.71
569 570 5.788014 AGGGCAAAAGGATAATTAACCCAAA 59.212 36.000 8.09 0.00 37.28 3.28
571 572 4.954089 AGGGCAAAAGGATAATTAACCCA 58.046 39.130 8.09 0.00 37.28 4.51
1505 1708 3.829886 ACATTACAACCAGTGCGATTG 57.170 42.857 0.00 0.00 0.00 2.67
2045 2248 1.549170 CACCTGGCGTAAACCTCTACT 59.451 52.381 0.00 0.00 0.00 2.57
2088 2291 5.782047 TGTTTTTCTCAATGTAATGCCCTG 58.218 37.500 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.