Multiple sequence alignment - TraesCS3A01G013900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G013900 chr3A 100.000 3452 0 0 1 3452 9887345 9890796 0.000000e+00 6375.0
1 TraesCS3A01G013900 chr3A 85.013 2302 234 58 506 2744 9950404 9952657 0.000000e+00 2237.0
2 TraesCS3A01G013900 chr3A 78.610 187 25 8 3103 3284 9962488 9962664 3.640000e-20 110.0
3 TraesCS3A01G013900 chr3D 93.669 2701 113 12 68 2729 4316837 4319518 0.000000e+00 3988.0
4 TraesCS3A01G013900 chr3D 86.576 2436 252 37 108 2486 4344554 4346971 0.000000e+00 2617.0
5 TraesCS3A01G013900 chr3D 86.948 498 50 9 2787 3278 4319657 4320145 2.340000e-151 545.0
6 TraesCS3A01G013900 chr3D 84.559 136 9 5 3325 3452 4320154 4320285 1.300000e-24 124.0
7 TraesCS3A01G013900 chr3D 78.610 187 26 8 3103 3284 4347551 4347728 1.010000e-20 111.0
8 TraesCS3A01G013900 chr3D 88.406 69 2 1 1 69 4316756 4316818 1.030000e-10 78.7
9 TraesCS3A01G013900 chrUn 95.170 1946 79 8 593 2535 308557574 308559507 0.000000e+00 3059.0
10 TraesCS3A01G013900 chrUn 86.133 2149 224 42 665 2755 35644402 35646534 0.000000e+00 2250.0
11 TraesCS3A01G013900 chrUn 86.528 720 93 3 1333 2049 35630966 35631684 0.000000e+00 789.0
12 TraesCS3A01G013900 chrUn 83.533 583 57 17 2874 3452 308559978 308560525 3.070000e-140 508.0
13 TraesCS3A01G013900 chrUn 93.015 272 14 2 319 590 35849106 35848840 3.230000e-105 392.0
14 TraesCS3A01G013900 chrUn 93.015 272 14 2 319 590 339651800 339651534 3.230000e-105 392.0
15 TraesCS3A01G013900 chrUn 88.321 274 25 3 68 334 35849395 35849122 4.300000e-84 322.0
16 TraesCS3A01G013900 chrUn 88.321 274 25 3 68 334 339652089 339651816 4.300000e-84 322.0
17 TraesCS3A01G013900 chrUn 79.459 185 27 7 3103 3284 35646796 35646972 1.680000e-23 121.0
18 TraesCS3A01G013900 chr2D 73.084 1070 267 15 1386 2440 9371912 9372975 9.110000e-96 361.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G013900 chr3A 9887345 9890796 3451 False 6375.000 6375 100.0000 1 3452 1 chr3A.!!$F1 3451
1 TraesCS3A01G013900 chr3A 9950404 9952657 2253 False 2237.000 2237 85.0130 506 2744 1 chr3A.!!$F2 2238
2 TraesCS3A01G013900 chr3D 4344554 4347728 3174 False 1364.000 2617 82.5930 108 3284 2 chr3D.!!$F2 3176
3 TraesCS3A01G013900 chr3D 4316756 4320285 3529 False 1183.925 3988 88.3955 1 3452 4 chr3D.!!$F1 3451
4 TraesCS3A01G013900 chrUn 308557574 308560525 2951 False 1783.500 3059 89.3515 593 3452 2 chrUn.!!$F3 2859
5 TraesCS3A01G013900 chrUn 35644402 35646972 2570 False 1185.500 2250 82.7960 665 3284 2 chrUn.!!$F2 2619
6 TraesCS3A01G013900 chrUn 35630966 35631684 718 False 789.000 789 86.5280 1333 2049 1 chrUn.!!$F1 716
7 TraesCS3A01G013900 chrUn 35848840 35849395 555 True 357.000 392 90.6680 68 590 2 chrUn.!!$R1 522
8 TraesCS3A01G013900 chrUn 339651534 339652089 555 True 357.000 392 90.6680 68 590 2 chrUn.!!$R2 522
9 TraesCS3A01G013900 chr2D 9371912 9372975 1063 False 361.000 361 73.0840 1386 2440 1 chr2D.!!$F1 1054

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 191 1.015109 CGAGCTACTAGAGACGGCAA 58.985 55.000 0.0 0.0 0.00 4.52 F
166 192 1.400846 CGAGCTACTAGAGACGGCAAA 59.599 52.381 0.0 0.0 0.00 3.68 F
1523 1646 1.473677 CATCATGTTTGGACGCCATGT 59.526 47.619 0.0 0.0 37.73 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1523 1646 0.028770 CAACAGCGTTTGCCTTTCGA 59.971 50.00 0.00 0.00 44.31 3.71 R
1539 1662 4.732784 TCTGTTGCAACAAGAAGTTCAAC 58.267 39.13 30.62 1.38 42.28 3.18 R
3285 3711 0.108662 AGCGTGACATCATCGCAGAA 60.109 50.00 21.94 0.00 43.58 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.623416 GGTTTACAAGAAGTTGCTGGCT 59.377 45.455 0.00 0.00 37.14 4.75
26 27 3.068165 GGTTTACAAGAAGTTGCTGGCTT 59.932 43.478 0.00 0.00 37.14 4.35
27 28 4.277423 GGTTTACAAGAAGTTGCTGGCTTA 59.723 41.667 0.00 0.00 37.14 3.09
28 29 5.212934 GTTTACAAGAAGTTGCTGGCTTAC 58.787 41.667 0.00 0.00 37.14 2.34
29 30 2.930950 ACAAGAAGTTGCTGGCTTACA 58.069 42.857 0.00 0.00 37.14 2.41
30 31 3.490348 ACAAGAAGTTGCTGGCTTACAT 58.510 40.909 0.00 0.00 37.14 2.29
76 97 2.159448 CGCTCCTGTGACTCTTCAGTAG 60.159 54.545 0.00 0.00 30.63 2.57
77 98 2.416701 GCTCCTGTGACTCTTCAGTAGC 60.417 54.545 0.00 0.00 36.73 3.58
100 121 2.103094 TGTTCTTGGACACCTCACTGAG 59.897 50.000 0.00 0.00 0.00 3.35
155 181 1.089920 GGACACCGAACGAGCTACTA 58.910 55.000 0.00 0.00 0.00 1.82
165 191 1.015109 CGAGCTACTAGAGACGGCAA 58.985 55.000 0.00 0.00 0.00 4.52
166 192 1.400846 CGAGCTACTAGAGACGGCAAA 59.599 52.381 0.00 0.00 0.00 3.68
254 286 4.030529 CGCAAGCATAGCATGTTTTACAAC 59.969 41.667 0.00 0.00 30.98 3.32
263 316 4.805192 AGCATGTTTTACAACAGCAGTTTG 59.195 37.500 14.40 3.75 46.25 2.93
373 457 9.528489 AAATAGCCAAAGGTTGAGAATAAGTTA 57.472 29.630 0.00 0.00 0.00 2.24
377 462 9.528489 AGCCAAAGGTTGAGAATAAGTTATAAA 57.472 29.630 0.00 0.00 0.00 1.40
660 747 8.076178 GCTTGCTCTTTAAAAGATACAAGAACA 58.924 33.333 18.70 8.42 45.28 3.18
684 773 3.753294 ATAGCTACTCCATGAAACGGG 57.247 47.619 0.00 0.00 0.00 5.28
1074 1197 5.152934 TCCTTCCTGGTAAACAAGTACTCT 58.847 41.667 0.00 0.00 37.07 3.24
1254 1377 2.287788 CCATGTTGTTGACACCTTCAGC 60.288 50.000 0.00 0.00 42.04 4.26
1267 1390 3.748568 CACCTTCAGCTACCAAAGTCTTC 59.251 47.826 0.00 0.00 0.00 2.87
1523 1646 1.473677 CATCATGTTTGGACGCCATGT 59.526 47.619 0.00 0.00 37.73 3.21
1539 1662 1.646540 TGTCGAAAGGCAAACGCTG 59.353 52.632 0.00 0.00 46.60 5.18
1979 2109 3.181466 GCAAACCCAAAAGAACATCCACT 60.181 43.478 0.00 0.00 0.00 4.00
2207 2340 6.188175 CGCTTCACTTAACAGATTATGCTTC 58.812 40.000 0.00 0.00 0.00 3.86
2236 2369 0.856641 GCGCGCGATACCTTATTCAA 59.143 50.000 37.18 0.00 0.00 2.69
2515 2648 8.181904 AGTAGCTCTTCAATTTTTCATGGAAA 57.818 30.769 0.00 0.00 0.00 3.13
2569 2762 3.329520 TGGCCCCGCTATATCTGTAATTT 59.670 43.478 0.00 0.00 0.00 1.82
2600 2793 9.196139 TGTATATGGTTCTTTTTCCCCTTATTG 57.804 33.333 0.00 0.00 0.00 1.90
2697 2956 3.225940 TGGACAATATTGCACCACAACA 58.774 40.909 22.71 7.59 42.27 3.33
2755 3097 8.116651 TGAGTTAAATGTTTATAGCTTTGGCA 57.883 30.769 0.00 0.00 41.70 4.92
2756 3098 8.026607 TGAGTTAAATGTTTATAGCTTTGGCAC 58.973 33.333 0.00 0.00 41.70 5.01
2791 3150 6.674861 TCTGTATAGAGACCAAAATGGGGTTA 59.325 38.462 0.00 0.00 43.37 2.85
2794 3153 9.005318 TGTATAGAGACCAAAATGGGGTTATAA 57.995 33.333 0.87 0.00 43.37 0.98
2797 3156 7.718334 AGAGACCAAAATGGGGTTATAAAAG 57.282 36.000 0.87 0.00 43.37 2.27
2856 3215 3.248363 GGCATTTCAGCAGAACCAAAAAC 59.752 43.478 0.00 0.00 35.83 2.43
2868 3229 6.398095 CAGAACCAAAAACTAATTCCCATCC 58.602 40.000 0.00 0.00 0.00 3.51
2916 3306 5.827797 AGAAGTTTGCCAAGTCAAGTAATGA 59.172 36.000 0.00 0.00 35.05 2.57
2951 3341 3.002862 GTGGTGTTTCATCTTTGTACGCA 59.997 43.478 0.00 0.00 0.00 5.24
3030 3420 1.725641 TTGAGACTTGGCATGCTACG 58.274 50.000 18.92 12.21 0.00 3.51
3032 3422 0.108138 GAGACTTGGCATGCTACGGT 60.108 55.000 18.92 12.84 0.00 4.83
3033 3423 1.136305 GAGACTTGGCATGCTACGGTA 59.864 52.381 18.92 0.00 0.00 4.02
3110 3531 0.888619 TGACGATGACCTGACCTGTC 59.111 55.000 0.00 0.00 0.00 3.51
3128 3549 4.377708 TGGCAGCAGACATCGCGT 62.378 61.111 5.77 0.00 0.00 6.01
3129 3550 3.857854 GGCAGCAGACATCGCGTG 61.858 66.667 5.77 6.57 0.00 5.34
3132 3553 0.871592 GCAGCAGACATCGCGTGATA 60.872 55.000 11.84 0.00 32.18 2.15
3135 3556 2.541346 CAGCAGACATCGCGTGATATTT 59.459 45.455 11.84 0.00 32.18 1.40
3136 3557 3.001634 CAGCAGACATCGCGTGATATTTT 59.998 43.478 11.84 0.00 32.18 1.82
3137 3558 3.623060 AGCAGACATCGCGTGATATTTTT 59.377 39.130 11.84 0.00 32.18 1.94
3138 3559 3.962481 GCAGACATCGCGTGATATTTTTC 59.038 43.478 11.84 3.72 32.18 2.29
3142 3563 6.139638 CAGACATCGCGTGATATTTTTCAATG 59.860 38.462 11.84 0.00 32.18 2.82
3143 3564 5.879237 ACATCGCGTGATATTTTTCAATGT 58.121 33.333 11.84 0.14 32.18 2.71
3144 3565 7.010697 ACATCGCGTGATATTTTTCAATGTA 57.989 32.000 11.84 0.00 32.18 2.29
3145 3566 7.125755 ACATCGCGTGATATTTTTCAATGTAG 58.874 34.615 11.84 0.00 32.18 2.74
3146 3567 6.656314 TCGCGTGATATTTTTCAATGTAGT 57.344 33.333 5.77 0.00 0.00 2.73
3147 3568 7.758613 TCGCGTGATATTTTTCAATGTAGTA 57.241 32.000 5.77 0.00 0.00 1.82
3238 3663 1.561542 ACCTGCCCATAGAAAGGTCAG 59.438 52.381 0.00 0.00 38.73 3.51
3263 3689 3.932580 CTGCCTAGCGCGTGTGGAA 62.933 63.158 8.43 0.49 42.08 3.53
3269 3695 4.389576 GCGCGTGTGGAAGCTTGG 62.390 66.667 2.10 0.00 0.00 3.61
3285 3711 5.717119 AGCTTGGTTGGATTATCTTAGGT 57.283 39.130 0.00 0.00 0.00 3.08
3286 3712 6.079712 AGCTTGGTTGGATTATCTTAGGTT 57.920 37.500 0.00 0.00 0.00 3.50
3287 3713 6.122964 AGCTTGGTTGGATTATCTTAGGTTC 58.877 40.000 0.00 0.00 0.00 3.62
3291 3717 4.511826 GGTTGGATTATCTTAGGTTCTGCG 59.488 45.833 0.00 0.00 0.00 5.18
3293 3719 5.808366 TGGATTATCTTAGGTTCTGCGAT 57.192 39.130 0.00 0.00 0.00 4.58
3297 3723 6.312426 GGATTATCTTAGGTTCTGCGATGATG 59.688 42.308 0.00 0.00 0.00 3.07
3301 3727 2.015736 AGGTTCTGCGATGATGTCAC 57.984 50.000 0.00 0.00 0.00 3.67
3313 3739 4.614702 CGATGATGTCACGCTACTGATTAG 59.385 45.833 0.00 0.00 0.00 1.73
3423 3859 1.852942 ATCGCTGCTTACCATGTACG 58.147 50.000 0.00 0.00 0.00 3.67
3425 3861 1.744522 TCGCTGCTTACCATGTACGTA 59.255 47.619 0.00 0.00 0.00 3.57
3426 3862 1.850441 CGCTGCTTACCATGTACGTAC 59.150 52.381 18.90 18.90 0.00 3.67
3427 3863 2.732912 CGCTGCTTACCATGTACGTACA 60.733 50.000 29.15 29.15 40.98 2.90
3441 3877 3.447918 ACGTACATAGTATTGCCGCTT 57.552 42.857 0.00 0.00 0.00 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.456535 TGTAAGCCAGCAACTTCTTGTAA 58.543 39.130 0.00 0.00 0.00 2.41
39 40 1.405821 GAGCGGCAGTAGTACATGAGT 59.594 52.381 0.00 0.00 0.00 3.41
76 97 0.108585 TGAGGTGTCCAAGAACAGGC 59.891 55.000 0.00 0.00 0.00 4.85
77 98 1.417890 AGTGAGGTGTCCAAGAACAGG 59.582 52.381 0.00 0.00 0.00 4.00
100 121 1.532868 GCATCGATACCAATGCACTCC 59.467 52.381 0.00 0.00 45.97 3.85
145 171 0.107800 TGCCGTCTCTAGTAGCTCGT 60.108 55.000 0.00 0.00 0.00 4.18
155 181 0.247736 CTGCTACCTTTGCCGTCTCT 59.752 55.000 0.00 0.00 0.00 3.10
165 191 1.258445 ACAGCCGCTACTGCTACCTT 61.258 55.000 0.00 0.00 41.60 3.50
166 192 1.682684 ACAGCCGCTACTGCTACCT 60.683 57.895 0.00 0.00 41.60 3.08
197 223 1.486726 GCTACACTTCCCTACCTGCAT 59.513 52.381 0.00 0.00 0.00 3.96
263 316 1.798813 GCCTTCAATATTGGCGTGCAC 60.799 52.381 15.36 6.82 37.11 4.57
270 323 2.423185 TGTGCTTCGCCTTCAATATTGG 59.577 45.455 15.36 0.76 0.00 3.16
450 535 9.798994 GATAGATCTTGTCTTTTGATTTGCATT 57.201 29.630 0.00 0.00 38.42 3.56
451 536 9.186837 AGATAGATCTTGTCTTTTGATTTGCAT 57.813 29.630 0.00 0.00 38.42 3.96
452 537 8.571461 AGATAGATCTTGTCTTTTGATTTGCA 57.429 30.769 0.00 0.00 38.42 4.08
453 538 8.891720 AGAGATAGATCTTGTCTTTTGATTTGC 58.108 33.333 0.00 0.00 38.42 3.68
455 540 9.956640 ACAGAGATAGATCTTGTCTTTTGATTT 57.043 29.630 18.99 0.00 38.42 2.17
564 651 3.992943 TTGACTGGTATTCGGTTCCAT 57.007 42.857 0.00 0.00 34.56 3.41
660 747 6.407074 GCCCGTTTCATGGAGTAGCTATATAT 60.407 42.308 0.00 0.00 0.00 0.86
661 748 5.105473 GCCCGTTTCATGGAGTAGCTATATA 60.105 44.000 0.00 0.00 0.00 0.86
662 749 4.322801 GCCCGTTTCATGGAGTAGCTATAT 60.323 45.833 0.00 0.00 0.00 0.86
663 750 3.006537 GCCCGTTTCATGGAGTAGCTATA 59.993 47.826 0.00 0.00 0.00 1.31
684 773 1.202855 ACCATGATGTGCCCTCTATGC 60.203 52.381 0.00 0.00 0.00 3.14
791 881 7.982252 TCTATGAATTCAAGGATAGCTCCAAT 58.018 34.615 13.09 0.00 44.79 3.16
792 882 7.379059 TCTATGAATTCAAGGATAGCTCCAA 57.621 36.000 13.09 0.00 44.79 3.53
879 973 1.768275 TGGTGAGCTGAAAGGACAAGA 59.232 47.619 0.00 0.00 0.00 3.02
1074 1197 3.270027 CAATCGGACATGGCTTGAGTAA 58.730 45.455 7.45 0.00 0.00 2.24
1189 1312 3.641434 AAGTAACTGGAGCTGCATCAT 57.359 42.857 8.91 0.25 0.00 2.45
1254 1377 4.757149 CCTTTGTCCTGAAGACTTTGGTAG 59.243 45.833 7.70 0.00 46.46 3.18
1267 1390 0.674581 TCGCTGATGCCTTTGTCCTG 60.675 55.000 0.00 0.00 35.36 3.86
1523 1646 0.028770 CAACAGCGTTTGCCTTTCGA 59.971 50.000 0.00 0.00 44.31 3.71
1539 1662 4.732784 TCTGTTGCAACAAGAAGTTCAAC 58.267 39.130 30.62 1.38 42.28 3.18
2236 2369 3.202151 TCCTTCTTCCTTGGAACTGTTGT 59.798 43.478 0.00 0.00 0.00 3.32
2515 2648 6.270064 CCGGTCTTTGTAAAAACACTGAAAT 58.730 36.000 0.00 0.00 0.00 2.17
2569 2762 8.340757 AGGGGAAAAAGAACCATATACATACAA 58.659 33.333 0.00 0.00 0.00 2.41
2667 2926 7.275560 GTGGTGCAATATTGTCCATTTTAAGAC 59.724 37.037 25.49 13.69 36.96 3.01
2697 2956 3.214328 GTGTCCAAGTCCTGACAATGTT 58.786 45.455 0.00 0.00 42.67 2.71
2760 3102 8.820831 CCATTTTGGTCTCTATACAGATAGGAT 58.179 37.037 0.00 0.00 33.18 3.24
2761 3103 7.235606 CCCATTTTGGTCTCTATACAGATAGGA 59.764 40.741 0.00 0.00 34.63 2.94
2762 3104 7.390027 CCCATTTTGGTCTCTATACAGATAGG 58.610 42.308 0.00 0.00 34.63 2.57
2763 3105 7.016661 ACCCCATTTTGGTCTCTATACAGATAG 59.983 40.741 0.00 0.00 35.17 2.08
2764 3106 6.849697 ACCCCATTTTGGTCTCTATACAGATA 59.150 38.462 0.00 0.00 35.17 1.98
2769 3111 9.856162 TTTATAACCCCATTTTGGTCTCTATAC 57.144 33.333 0.00 0.00 35.17 1.47
2771 3113 9.421399 CTTTTATAACCCCATTTTGGTCTCTAT 57.579 33.333 0.00 0.00 35.17 1.98
2772 3114 7.837187 CCTTTTATAACCCCATTTTGGTCTCTA 59.163 37.037 0.00 0.00 35.17 2.43
2773 3115 6.667848 CCTTTTATAACCCCATTTTGGTCTCT 59.332 38.462 0.00 0.00 35.17 3.10
2774 3116 6.666113 TCCTTTTATAACCCCATTTTGGTCTC 59.334 38.462 0.00 0.00 35.17 3.36
2775 3117 6.439375 GTCCTTTTATAACCCCATTTTGGTCT 59.561 38.462 0.00 0.00 35.17 3.85
2791 3150 3.260884 TCTCACCTTGCGAGTCCTTTTAT 59.739 43.478 0.00 0.00 0.00 1.40
2794 3153 1.048601 TCTCACCTTGCGAGTCCTTT 58.951 50.000 0.00 0.00 0.00 3.11
2797 3156 1.000955 TCTTTCTCACCTTGCGAGTCC 59.999 52.381 0.00 0.00 0.00 3.85
2868 3229 5.481105 AGGTAACATGTTCATTTTGCCATG 58.519 37.500 15.85 0.00 40.34 3.66
2951 3341 7.418597 GGGATTTACTTTTTCTCCAGGTTTGTT 60.419 37.037 0.00 0.00 0.00 2.83
3110 3531 3.561213 CGCGATGTCTGCTGCCAG 61.561 66.667 0.00 0.00 40.54 4.85
3116 3537 3.592381 AAAATATCACGCGATGTCTGC 57.408 42.857 15.93 0.00 32.73 4.26
3197 3622 5.944007 AGGTAGCAATTTCTAAACGAACCAT 59.056 36.000 0.00 0.00 0.00 3.55
3199 3624 5.628134 CAGGTAGCAATTTCTAAACGAACC 58.372 41.667 0.00 0.00 0.00 3.62
3263 3689 5.717119 ACCTAAGATAATCCAACCAAGCT 57.283 39.130 0.00 0.00 0.00 3.74
3269 3695 5.357257 TCGCAGAACCTAAGATAATCCAAC 58.643 41.667 0.00 0.00 0.00 3.77
3285 3711 0.108662 AGCGTGACATCATCGCAGAA 60.109 50.000 21.94 0.00 43.58 3.02
3286 3712 0.738389 TAGCGTGACATCATCGCAGA 59.262 50.000 21.94 12.14 43.48 4.26
3287 3713 0.848942 GTAGCGTGACATCATCGCAG 59.151 55.000 21.94 1.31 43.48 5.18
3291 3717 4.384247 GCTAATCAGTAGCGTGACATCATC 59.616 45.833 0.00 0.00 45.71 2.92
3293 3719 3.706698 GCTAATCAGTAGCGTGACATCA 58.293 45.455 0.00 0.00 45.71 3.07
3313 3739 2.751166 ATGCATACGAGATACCCTGC 57.249 50.000 0.00 0.00 0.00 4.85
3371 3801 5.817816 CACCTTCTGCCTAGTAAACCATAAG 59.182 44.000 0.00 0.00 0.00 1.73
3376 3806 3.335579 CACACCTTCTGCCTAGTAAACC 58.664 50.000 0.00 0.00 0.00 3.27
3423 3859 3.303132 GCACAAGCGGCAATACTATGTAC 60.303 47.826 1.45 0.00 0.00 2.90
3425 3861 1.670811 GCACAAGCGGCAATACTATGT 59.329 47.619 1.45 0.00 0.00 2.29
3426 3862 1.002468 GGCACAAGCGGCAATACTATG 60.002 52.381 1.45 0.00 43.41 2.23
3427 3863 1.308998 GGCACAAGCGGCAATACTAT 58.691 50.000 1.45 0.00 43.41 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.