Multiple sequence alignment - TraesCS3A01G012600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G012600 chr3A 100.000 2797 0 0 1 2797 9572268 9575064 0.000000e+00 5166
1 TraesCS3A01G012600 chr3A 89.474 874 77 7 1217 2077 9556234 9557105 0.000000e+00 1090
2 TraesCS3A01G012600 chr3A 84.286 140 10 8 497 633 9555512 9555642 2.920000e-25 126
3 TraesCS3A01G012600 chr3D 86.801 2129 164 61 1 2082 4012360 4010302 0.000000e+00 2266
4 TraesCS3A01G012600 chr3D 85.942 1252 113 25 881 2083 4045374 4044137 0.000000e+00 1279
5 TraesCS3A01G012600 chr3D 91.775 693 55 2 1170 1862 4043793 4043103 0.000000e+00 963
6 TraesCS3A01G012600 chr3D 82.931 580 99 0 1230 1809 4046235 4046814 8.880000e-145 523
7 TraesCS3A01G012600 chr3D 83.245 567 95 0 1232 1798 4012395 4012961 3.190000e-144 521
8 TraesCS3A01G012600 chr3D 81.240 597 63 24 61 634 4046131 4045561 1.190000e-118 436
9 TraesCS3A01G012600 chr3D 81.761 159 25 4 2401 2558 4009841 4009686 2.260000e-26 130
10 TraesCS3A01G012600 chr7D 83.505 582 96 0 1229 1810 577201240 577201821 6.810000e-151 544
11 TraesCS3A01G012600 chr7A 83.538 571 94 0 1229 1799 669215370 669215940 4.100000e-148 534
12 TraesCS3A01G012600 chr7A 83.451 568 94 0 1229 1796 669293445 669294012 1.910000e-146 529


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G012600 chr3A 9572268 9575064 2796 False 5166.000000 5166 100.000 1 2797 1 chr3A.!!$F1 2796
1 TraesCS3A01G012600 chr3A 9555512 9557105 1593 False 608.000000 1090 86.880 497 2077 2 chr3A.!!$F2 1580
2 TraesCS3A01G012600 chr3D 4009686 4012360 2674 True 1198.000000 2266 84.281 1 2558 2 chr3D.!!$R1 2557
3 TraesCS3A01G012600 chr3D 4043103 4046131 3028 True 892.666667 1279 86.319 61 2083 3 chr3D.!!$R2 2022
4 TraesCS3A01G012600 chr3D 4046235 4046814 579 False 523.000000 523 82.931 1230 1809 1 chr3D.!!$F2 579
5 TraesCS3A01G012600 chr3D 4012395 4012961 566 False 521.000000 521 83.245 1232 1798 1 chr3D.!!$F1 566
6 TraesCS3A01G012600 chr7D 577201240 577201821 581 False 544.000000 544 83.505 1229 1810 1 chr7D.!!$F1 581
7 TraesCS3A01G012600 chr7A 669215370 669215940 570 False 534.000000 534 83.538 1229 1799 1 chr7A.!!$F1 570
8 TraesCS3A01G012600 chr7A 669293445 669294012 567 False 529.000000 529 83.451 1229 1796 1 chr7A.!!$F2 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 714 0.105593 ACCTAGTCGCCTCATGCATG 59.894 55.0 21.07 21.07 41.33 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2229 2739 0.108756 GACTAGTGAGGCCGTGTTCC 60.109 60.0 0.0 0.0 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.358406 TCTATCAATAATTTGTGAATGGATGCT 57.642 29.630 0.00 0.00 34.32 3.79
45 46 9.737844 TTGTGAATGGATGCTATGCTAAATATA 57.262 29.630 0.00 0.00 0.00 0.86
101 102 3.997021 CCAGTGTTGAGAAGACATACCAC 59.003 47.826 0.00 0.00 0.00 4.16
154 155 2.279784 GGGCTCGGATCAGAAGCG 60.280 66.667 0.00 0.00 0.00 4.68
183 184 0.168788 CATGACGCCAACGCAAGAAT 59.831 50.000 0.00 0.00 45.53 2.40
210 211 6.716284 CAAAGAGAAGGAAATAGGAAGAGGT 58.284 40.000 0.00 0.00 0.00 3.85
269 274 0.450184 GCTTCGTTGTGTTGTGTGGT 59.550 50.000 0.00 0.00 0.00 4.16
342 348 3.186817 TGTGAAACAGTCAACGAAAACGT 59.813 39.130 0.00 0.00 45.67 3.99
362 372 3.940852 CGTATATGTGTATGCATGGCCAT 59.059 43.478 14.09 14.09 0.00 4.40
363 373 4.201841 CGTATATGTGTATGCATGGCCATG 60.202 45.833 36.80 36.80 41.60 3.66
410 421 1.153745 CGAGCAGGTGTAGAGTGCC 60.154 63.158 0.00 0.00 37.98 5.01
411 422 1.219393 GAGCAGGTGTAGAGTGCCC 59.781 63.158 0.00 0.00 37.98 5.36
434 445 2.678471 CCAAAACATGGCCTGAATCC 57.322 50.000 3.32 0.00 43.80 3.01
445 456 3.245371 TGGCCTGAATCCATCAACTTTCT 60.245 43.478 3.32 0.00 37.67 2.52
484 499 7.528996 TGGTGTACTACTAGCTAAGAAAACA 57.471 36.000 0.00 0.00 0.00 2.83
526 552 7.224557 TGGTCTGACGTGATAAATTATGATGTG 59.775 37.037 2.15 0.00 0.00 3.21
527 553 7.224753 GGTCTGACGTGATAAATTATGATGTGT 59.775 37.037 2.15 0.00 0.00 3.72
549 575 2.156098 TGGATTACACGCCTTTGAACC 58.844 47.619 0.00 0.00 0.00 3.62
555 584 2.241880 ACGCCTTTGAACCGTGTCG 61.242 57.895 0.00 0.00 33.46 4.35
646 675 3.024547 TGGCGTAATCTTGAGAGCTAGT 58.975 45.455 0.00 0.00 0.00 2.57
648 677 3.799420 GGCGTAATCTTGAGAGCTAGTTG 59.201 47.826 0.00 0.00 0.00 3.16
649 678 4.440250 GGCGTAATCTTGAGAGCTAGTTGA 60.440 45.833 0.00 0.00 0.00 3.18
650 679 4.501198 GCGTAATCTTGAGAGCTAGTTGAC 59.499 45.833 0.00 0.00 0.00 3.18
676 712 1.409064 CTTACCTAGTCGCCTCATGCA 59.591 52.381 0.00 0.00 41.33 3.96
678 714 0.105593 ACCTAGTCGCCTCATGCATG 59.894 55.000 21.07 21.07 41.33 4.06
679 715 1.226686 CCTAGTCGCCTCATGCATGC 61.227 60.000 22.25 11.82 41.33 4.06
680 716 0.249784 CTAGTCGCCTCATGCATGCT 60.250 55.000 22.25 13.83 41.33 3.79
681 717 1.000171 CTAGTCGCCTCATGCATGCTA 60.000 52.381 22.25 14.21 41.33 3.49
697 733 1.084289 GCTAGGTTTGTTGCTACCGG 58.916 55.000 0.00 0.00 39.46 5.28
716 752 8.039538 GCTACCGGGAGTTAATTAATTAGCTAT 58.960 37.037 20.53 4.47 34.57 2.97
779 830 2.473984 CAGTTTAACCGTCGTCAAGACC 59.526 50.000 0.00 0.00 46.92 3.85
790 848 4.561606 CGTCGTCAAGACCTGTTAATTAGG 59.438 45.833 7.08 7.08 46.92 2.69
797 855 3.007614 AGACCTGTTAATTAGGCACGTGT 59.992 43.478 18.38 0.00 38.96 4.49
810 868 1.451207 ACGTGTGGTTGCTCTGCAA 60.451 52.632 0.45 0.45 46.80 4.08
834 896 7.667575 ATTAGAGACCATGTCAATCTAGTGT 57.332 36.000 0.00 0.00 34.60 3.55
842 904 5.819379 CCATGTCAATCTAGTGTTGCTATGT 59.181 40.000 15.89 0.00 0.00 2.29
859 921 5.065474 TGCTATGTTACGCCTTGGATTTTAC 59.935 40.000 0.00 0.00 0.00 2.01
861 923 6.480981 GCTATGTTACGCCTTGGATTTTACTA 59.519 38.462 0.00 0.00 0.00 1.82
862 924 7.011669 GCTATGTTACGCCTTGGATTTTACTAA 59.988 37.037 0.00 0.00 0.00 2.24
863 925 7.875327 ATGTTACGCCTTGGATTTTACTAAT 57.125 32.000 0.00 0.00 0.00 1.73
864 926 7.690952 TGTTACGCCTTGGATTTTACTAATT 57.309 32.000 0.00 0.00 0.00 1.40
865 927 7.754625 TGTTACGCCTTGGATTTTACTAATTC 58.245 34.615 0.00 0.00 0.00 2.17
866 928 5.479716 ACGCCTTGGATTTTACTAATTCG 57.520 39.130 0.00 0.00 0.00 3.34
868 930 4.201871 CGCCTTGGATTTTACTAATTCGCA 60.202 41.667 0.00 0.00 0.00 5.10
869 931 5.646606 GCCTTGGATTTTACTAATTCGCAA 58.353 37.500 0.00 0.00 0.00 4.85
870 932 5.515270 GCCTTGGATTTTACTAATTCGCAAC 59.485 40.000 0.00 0.00 0.00 4.17
871 933 6.625081 GCCTTGGATTTTACTAATTCGCAACT 60.625 38.462 0.00 0.00 0.00 3.16
872 934 6.967199 CCTTGGATTTTACTAATTCGCAACTC 59.033 38.462 0.00 0.00 0.00 3.01
873 935 7.361713 CCTTGGATTTTACTAATTCGCAACTCA 60.362 37.037 0.00 0.00 0.00 3.41
874 936 7.072177 TGGATTTTACTAATTCGCAACTCAG 57.928 36.000 0.00 0.00 0.00 3.35
875 937 6.093495 TGGATTTTACTAATTCGCAACTCAGG 59.907 38.462 0.00 0.00 0.00 3.86
876 938 6.315393 GGATTTTACTAATTCGCAACTCAGGA 59.685 38.462 0.00 0.00 0.00 3.86
901 963 6.098838 ACAGCTGCAGCCAAGCTATATATATA 59.901 38.462 34.39 2.49 43.38 0.86
902 964 7.160049 CAGCTGCAGCCAAGCTATATATATAT 58.840 38.462 34.39 7.22 43.38 0.86
903 965 7.117956 CAGCTGCAGCCAAGCTATATATATATG 59.882 40.741 34.39 15.82 43.38 1.78
909 971 9.933723 CAGCCAAGCTATATATATATGCATACA 57.066 33.333 8.99 0.00 36.40 2.29
943 1005 2.014068 GCCACAGAATCAGCTACCACC 61.014 57.143 0.00 0.00 0.00 4.61
988 1070 5.426689 AGAGTTAGACAGCATCCATTTCA 57.573 39.130 0.00 0.00 0.00 2.69
1008 1093 1.512694 CGGCAGAAAAATGGCCTCC 59.487 57.895 3.32 0.00 45.53 4.30
1011 1096 1.205655 GGCAGAAAAATGGCCTCCTTC 59.794 52.381 3.32 1.69 44.32 3.46
1034 1119 1.566211 TCCTCCTGCTTCCTTCTCTG 58.434 55.000 0.00 0.00 0.00 3.35
1062 1147 3.795623 ATTCTTGCATTGGTCTCATGC 57.204 42.857 0.00 0.00 41.35 4.06
1069 1154 0.106819 ATTGGTCTCATGCCAGGCTC 60.107 55.000 14.15 0.00 37.31 4.70
1072 1157 1.055040 GGTCTCATGCCAGGCTCTAT 58.945 55.000 14.15 0.00 0.00 1.98
1077 1162 2.367894 CTCATGCCAGGCTCTATCTTCA 59.632 50.000 14.15 0.00 0.00 3.02
1107 1192 3.561725 GTCCTCTCCAAGACTTTTGTGTG 59.438 47.826 0.00 0.00 0.00 3.82
1155 1240 4.385825 ACCAAGTTAACTCTTTCATCGCA 58.614 39.130 8.95 0.00 0.00 5.10
1206 1308 5.537188 TGTAATCAATTTTCCCTTGTGTGC 58.463 37.500 0.00 0.00 0.00 4.57
1212 1314 4.864704 ATTTTCCCTTGTGTGCGTATTT 57.135 36.364 0.00 0.00 0.00 1.40
1250 1372 5.121611 TGATGCAGTACTTGTTAACGGATTG 59.878 40.000 0.26 0.00 0.00 2.67
1251 1373 4.633175 TGCAGTACTTGTTAACGGATTGA 58.367 39.130 0.26 0.00 0.00 2.57
1277 1399 2.112297 GACCCAAAGGCCGTGACA 59.888 61.111 10.77 0.00 36.11 3.58
1487 1609 1.137872 GAGATCCTCACCGTGCTTGAT 59.862 52.381 0.00 0.00 0.00 2.57
1565 1687 0.908198 AGCTCAGGAAGGGTGATGTC 59.092 55.000 0.00 0.00 0.00 3.06
1577 1699 2.030274 GGGTGATGTCTTTGTTTTCCCG 60.030 50.000 0.00 0.00 0.00 5.14
1622 1744 2.359011 CCCAACCCCTACAAGCCC 59.641 66.667 0.00 0.00 0.00 5.19
1695 1817 1.330521 CCAACGCCGTATTTGGATCAG 59.669 52.381 0.04 0.00 44.51 2.90
1828 1950 1.804326 CGGTCGCTAGGGTTTGACG 60.804 63.158 6.70 2.48 32.17 4.35
1843 1965 5.631929 GGGTTTGACGACAAAATTGTATTCC 59.368 40.000 14.38 8.78 45.65 3.01
1849 1971 5.768317 ACGACAAAATTGTATTCCTTGTGG 58.232 37.500 0.00 0.00 42.43 4.17
1955 2463 8.833493 TCTTATCATAACAAGTGCTCATGATTG 58.167 33.333 0.00 0.00 37.48 2.67
1958 2466 8.687292 ATCATAACAAGTGCTCATGATTGTAT 57.313 30.769 11.73 6.42 33.62 2.29
1962 2470 6.683974 ACAAGTGCTCATGATTGTATAACC 57.316 37.500 10.04 0.00 34.26 2.85
1965 2473 3.821033 GTGCTCATGATTGTATAACCCCC 59.179 47.826 0.00 0.00 0.00 5.40
1968 2476 5.079643 GCTCATGATTGTATAACCCCCAAT 58.920 41.667 0.00 0.00 0.00 3.16
1973 2483 8.622870 TCATGATTGTATAACCCCCAATGATAT 58.377 33.333 0.00 0.00 0.00 1.63
2005 2515 7.831691 TCTCTAATTTGTTTGGATTGGTGAA 57.168 32.000 0.00 0.00 0.00 3.18
2022 2532 1.877443 TGAATATCGGATGTCTCGCGA 59.123 47.619 9.26 9.26 0.00 5.87
2027 2537 2.105128 GGATGTCTCGCGACCCTG 59.895 66.667 3.71 0.00 39.47 4.45
2051 2561 4.883006 GCTTAGTATAGGCCGATACTAGCT 59.117 45.833 31.77 20.62 42.84 3.32
2053 2563 6.127675 GCTTAGTATAGGCCGATACTAGCTTT 60.128 42.308 31.77 19.91 42.84 3.51
2066 2576 4.936685 ACTAGCTTTGGAAGGATCCTTT 57.063 40.909 27.68 12.69 46.70 3.11
2079 2589 8.004801 TGGAAGGATCCTTTCTAAAGAAACTTT 58.995 33.333 29.37 2.77 46.70 2.66
2081 2591 9.684448 GAAGGATCCTTTCTAAAGAAACTTTTG 57.316 33.333 27.68 1.41 38.94 2.44
2082 2592 8.768501 AGGATCCTTTCTAAAGAAACTTTTGT 57.231 30.769 9.02 0.00 38.94 2.83
2083 2593 9.862149 AGGATCCTTTCTAAAGAAACTTTTGTA 57.138 29.630 9.02 0.00 38.94 2.41
2084 2594 9.894783 GGATCCTTTCTAAAGAAACTTTTGTAC 57.105 33.333 3.84 0.00 38.94 2.90
2087 2597 9.117183 TCCTTTCTAAAGAAACTTTTGTACTCC 57.883 33.333 4.01 0.00 38.94 3.85
2088 2598 8.350722 CCTTTCTAAAGAAACTTTTGTACTCCC 58.649 37.037 4.01 0.00 38.94 4.30
2089 2599 9.121658 CTTTCTAAAGAAACTTTTGTACTCCCT 57.878 33.333 1.00 0.00 38.94 4.20
2091 2601 9.551734 TTCTAAAGAAACTTTTGTACTCCCTAC 57.448 33.333 2.17 0.00 0.00 3.18
2092 2602 8.707449 TCTAAAGAAACTTTTGTACTCCCTACA 58.293 33.333 2.17 0.00 33.18 2.74
2093 2603 7.803279 AAAGAAACTTTTGTACTCCCTACAG 57.197 36.000 0.00 0.00 36.67 2.74
2094 2604 6.742559 AGAAACTTTTGTACTCCCTACAGA 57.257 37.500 0.00 0.00 36.67 3.41
2095 2605 7.317722 AGAAACTTTTGTACTCCCTACAGAT 57.682 36.000 0.00 0.00 36.67 2.90
2096 2606 7.162082 AGAAACTTTTGTACTCCCTACAGATG 58.838 38.462 0.00 0.00 36.67 2.90
2097 2607 5.422214 ACTTTTGTACTCCCTACAGATGG 57.578 43.478 0.00 0.00 36.67 3.51
2098 2608 4.225267 ACTTTTGTACTCCCTACAGATGGG 59.775 45.833 0.00 0.00 45.90 4.00
2109 2619 5.762179 CCTACAGATGGGAATATAAGCCA 57.238 43.478 0.00 0.00 0.00 4.75
2110 2620 5.738909 CCTACAGATGGGAATATAAGCCAG 58.261 45.833 0.00 0.00 0.00 4.85
2111 2621 4.647564 ACAGATGGGAATATAAGCCAGG 57.352 45.455 0.00 0.00 0.00 4.45
2112 2622 3.245052 ACAGATGGGAATATAAGCCAGGC 60.245 47.826 1.84 1.84 0.00 4.85
2113 2623 2.988859 AGATGGGAATATAAGCCAGGCA 59.011 45.455 15.80 0.00 0.00 4.75
2114 2624 2.656947 TGGGAATATAAGCCAGGCAC 57.343 50.000 15.80 0.00 0.00 5.01
2115 2625 1.202758 TGGGAATATAAGCCAGGCACG 60.203 52.381 15.80 0.00 0.00 5.34
2116 2626 1.071699 GGGAATATAAGCCAGGCACGA 59.928 52.381 15.80 0.00 0.00 4.35
2117 2627 2.417719 GGAATATAAGCCAGGCACGAG 58.582 52.381 15.80 0.00 0.00 4.18
2118 2628 2.037251 GGAATATAAGCCAGGCACGAGA 59.963 50.000 15.80 0.00 0.00 4.04
2119 2629 3.494398 GGAATATAAGCCAGGCACGAGAA 60.494 47.826 15.80 0.00 0.00 2.87
2120 2630 4.319177 GAATATAAGCCAGGCACGAGAAT 58.681 43.478 15.80 0.00 0.00 2.40
2121 2631 2.717639 ATAAGCCAGGCACGAGAATT 57.282 45.000 15.80 0.00 0.00 2.17
2122 2632 2.489938 TAAGCCAGGCACGAGAATTT 57.510 45.000 15.80 0.00 0.00 1.82
2123 2633 2.489938 AAGCCAGGCACGAGAATTTA 57.510 45.000 15.80 0.00 0.00 1.40
2124 2634 2.029838 AGCCAGGCACGAGAATTTAG 57.970 50.000 15.80 0.00 0.00 1.85
2125 2635 0.378610 GCCAGGCACGAGAATTTAGC 59.621 55.000 6.55 0.00 0.00 3.09
2126 2636 2.014068 GCCAGGCACGAGAATTTAGCT 61.014 52.381 6.55 0.00 0.00 3.32
2127 2637 1.936547 CCAGGCACGAGAATTTAGCTC 59.063 52.381 0.00 0.00 0.00 4.09
2139 2649 7.452630 GAGAATTTAGCTCGTCGATTTAACT 57.547 36.000 0.00 0.00 0.00 2.24
2140 2650 8.557869 GAGAATTTAGCTCGTCGATTTAACTA 57.442 34.615 0.00 0.00 0.00 2.24
2141 2651 8.563289 AGAATTTAGCTCGTCGATTTAACTAG 57.437 34.615 0.00 0.00 0.00 2.57
2142 2652 6.750775 ATTTAGCTCGTCGATTTAACTAGC 57.249 37.500 0.00 0.00 36.11 3.42
2143 2653 3.777465 AGCTCGTCGATTTAACTAGCA 57.223 42.857 0.00 0.00 37.77 3.49
2144 2654 4.106029 AGCTCGTCGATTTAACTAGCAA 57.894 40.909 0.00 0.00 37.77 3.91
2145 2655 4.491676 AGCTCGTCGATTTAACTAGCAAA 58.508 39.130 0.00 0.00 37.77 3.68
2146 2656 5.109903 AGCTCGTCGATTTAACTAGCAAAT 58.890 37.500 0.00 3.24 37.77 2.32
2147 2657 5.232414 AGCTCGTCGATTTAACTAGCAAATC 59.768 40.000 15.60 15.60 37.77 2.17
2148 2658 5.005394 GCTCGTCGATTTAACTAGCAAATCA 59.995 40.000 21.38 11.53 40.76 2.57
2149 2659 6.292381 GCTCGTCGATTTAACTAGCAAATCAT 60.292 38.462 21.38 0.00 40.76 2.45
2150 2660 6.933130 TCGTCGATTTAACTAGCAAATCATG 58.067 36.000 21.38 15.81 40.76 3.07
2245 2755 4.201523 TGGAACACGGCCTCACTA 57.798 55.556 0.00 0.00 0.00 2.74
2246 2756 1.972198 TGGAACACGGCCTCACTAG 59.028 57.895 0.00 0.00 0.00 2.57
2247 2757 0.830444 TGGAACACGGCCTCACTAGT 60.830 55.000 0.00 0.00 0.00 2.57
2248 2758 0.108756 GGAACACGGCCTCACTAGTC 60.109 60.000 0.00 0.00 0.00 2.59
2249 2759 0.456312 GAACACGGCCTCACTAGTCG 60.456 60.000 0.00 0.00 0.00 4.18
2250 2760 0.892358 AACACGGCCTCACTAGTCGA 60.892 55.000 0.00 2.07 0.00 4.20
2251 2761 0.892358 ACACGGCCTCACTAGTCGAA 60.892 55.000 0.00 0.00 0.00 3.71
2252 2762 0.456221 CACGGCCTCACTAGTCGAAT 59.544 55.000 0.00 0.00 0.00 3.34
2253 2763 0.739561 ACGGCCTCACTAGTCGAATC 59.260 55.000 0.00 0.00 0.00 2.52
2254 2764 0.317103 CGGCCTCACTAGTCGAATCG 60.317 60.000 0.00 0.00 0.00 3.34
2255 2765 1.022735 GGCCTCACTAGTCGAATCGA 58.977 55.000 0.00 0.00 0.00 3.59
2256 2766 1.404391 GGCCTCACTAGTCGAATCGAA 59.596 52.381 7.01 0.00 37.72 3.71
2257 2767 2.541999 GGCCTCACTAGTCGAATCGAAG 60.542 54.545 7.01 4.73 37.72 3.79
2258 2768 2.355132 GCCTCACTAGTCGAATCGAAGA 59.645 50.000 7.01 0.00 45.75 2.87
2259 2769 3.789459 GCCTCACTAGTCGAATCGAAGAC 60.789 52.174 7.01 9.99 42.51 3.01
2260 2770 3.242804 CCTCACTAGTCGAATCGAAGACC 60.243 52.174 7.01 0.00 42.51 3.85
2261 2771 3.607741 TCACTAGTCGAATCGAAGACCT 58.392 45.455 7.01 2.60 42.51 3.85
2262 2772 4.763073 TCACTAGTCGAATCGAAGACCTA 58.237 43.478 7.01 3.75 42.51 3.08
2263 2773 5.181009 TCACTAGTCGAATCGAAGACCTAA 58.819 41.667 7.01 0.00 42.51 2.69
2264 2774 5.645067 TCACTAGTCGAATCGAAGACCTAAA 59.355 40.000 7.01 0.00 42.51 1.85
2265 2775 5.966503 CACTAGTCGAATCGAAGACCTAAAG 59.033 44.000 7.01 0.00 42.51 1.85
2266 2776 5.879223 ACTAGTCGAATCGAAGACCTAAAGA 59.121 40.000 7.01 0.00 42.51 2.52
2267 2777 4.984205 AGTCGAATCGAAGACCTAAAGAC 58.016 43.478 7.01 0.00 42.51 3.01
2268 2778 4.458295 AGTCGAATCGAAGACCTAAAGACA 59.542 41.667 7.01 0.00 42.51 3.41
2269 2779 4.558080 GTCGAATCGAAGACCTAAAGACAC 59.442 45.833 7.01 0.00 42.51 3.67
2270 2780 4.216902 TCGAATCGAAGACCTAAAGACACA 59.783 41.667 1.57 0.00 42.51 3.72
2271 2781 5.103000 CGAATCGAAGACCTAAAGACACAT 58.897 41.667 0.00 0.00 42.51 3.21
2272 2782 5.004821 CGAATCGAAGACCTAAAGACACATG 59.995 44.000 0.00 0.00 42.51 3.21
2273 2783 3.585862 TCGAAGACCTAAAGACACATGC 58.414 45.455 0.00 0.00 0.00 4.06
2274 2784 2.673368 CGAAGACCTAAAGACACATGCC 59.327 50.000 0.00 0.00 0.00 4.40
2275 2785 2.789409 AGACCTAAAGACACATGCCC 57.211 50.000 0.00 0.00 0.00 5.36
2276 2786 1.066143 AGACCTAAAGACACATGCCCG 60.066 52.381 0.00 0.00 0.00 6.13
2277 2787 0.981183 ACCTAAAGACACATGCCCGA 59.019 50.000 0.00 0.00 0.00 5.14
2278 2788 1.338769 ACCTAAAGACACATGCCCGAC 60.339 52.381 0.00 0.00 0.00 4.79
2279 2789 1.066143 CCTAAAGACACATGCCCGACT 60.066 52.381 0.00 0.00 0.00 4.18
2280 2790 2.002586 CTAAAGACACATGCCCGACTG 58.997 52.381 0.00 0.00 0.00 3.51
2281 2791 0.396435 AAAGACACATGCCCGACTGA 59.604 50.000 0.00 0.00 0.00 3.41
2282 2792 0.615331 AAGACACATGCCCGACTGAT 59.385 50.000 0.00 0.00 0.00 2.90
2283 2793 1.485124 AGACACATGCCCGACTGATA 58.515 50.000 0.00 0.00 0.00 2.15
2284 2794 2.042464 AGACACATGCCCGACTGATAT 58.958 47.619 0.00 0.00 0.00 1.63
2285 2795 2.435805 AGACACATGCCCGACTGATATT 59.564 45.455 0.00 0.00 0.00 1.28
2286 2796 3.118261 AGACACATGCCCGACTGATATTT 60.118 43.478 0.00 0.00 0.00 1.40
2287 2797 3.206150 ACACATGCCCGACTGATATTTC 58.794 45.455 0.00 0.00 0.00 2.17
2288 2798 2.549754 CACATGCCCGACTGATATTTCC 59.450 50.000 0.00 0.00 0.00 3.13
2289 2799 2.172505 ACATGCCCGACTGATATTTCCA 59.827 45.455 0.00 0.00 0.00 3.53
2290 2800 3.181440 ACATGCCCGACTGATATTTCCAT 60.181 43.478 0.00 0.00 0.00 3.41
2291 2801 3.126001 TGCCCGACTGATATTTCCATC 57.874 47.619 0.00 0.00 0.00 3.51
2292 2802 2.437651 TGCCCGACTGATATTTCCATCA 59.562 45.455 0.00 0.00 33.88 3.07
2305 2815 7.513781 TGATATTTCCATCAGAAGGGAGTATGA 59.486 37.037 0.00 0.00 36.55 2.15
2307 2817 6.581388 TTTCCATCAGAAGGGAGTATGATT 57.419 37.500 0.00 0.00 36.55 2.57
2343 2853 3.517612 GTCATAGAGGGGGCTAATGGTA 58.482 50.000 0.00 0.00 0.00 3.25
2349 2859 0.108774 GGGGGCTAATGGTACTCTGC 59.891 60.000 0.00 0.00 0.00 4.26
2351 2861 2.326428 GGGGCTAATGGTACTCTGCTA 58.674 52.381 0.00 0.00 0.00 3.49
2370 2880 3.371595 GCTATGTAGCTTCCCCTGGAAAA 60.372 47.826 4.81 0.00 45.62 2.29
2375 2885 3.372440 AGCTTCCCCTGGAAAATGTAG 57.628 47.619 0.00 0.00 41.54 2.74
2376 2886 2.649816 AGCTTCCCCTGGAAAATGTAGT 59.350 45.455 0.00 0.00 41.54 2.73
2377 2887 3.017442 GCTTCCCCTGGAAAATGTAGTC 58.983 50.000 0.00 0.00 41.54 2.59
2379 2889 2.929301 TCCCCTGGAAAATGTAGTCCT 58.071 47.619 0.00 0.00 34.77 3.85
2380 2890 2.844348 TCCCCTGGAAAATGTAGTCCTC 59.156 50.000 0.00 0.00 34.77 3.71
2381 2891 2.846827 CCCCTGGAAAATGTAGTCCTCT 59.153 50.000 0.00 0.00 34.77 3.69
2382 2892 3.118223 CCCCTGGAAAATGTAGTCCTCTC 60.118 52.174 0.00 0.00 34.77 3.20
2383 2893 3.118223 CCCTGGAAAATGTAGTCCTCTCC 60.118 52.174 0.00 0.00 34.77 3.71
2385 2895 4.141824 CCTGGAAAATGTAGTCCTCTCCTC 60.142 50.000 0.00 0.00 34.77 3.71
2386 2896 3.447586 TGGAAAATGTAGTCCTCTCCTCG 59.552 47.826 0.00 0.00 34.77 4.63
2387 2897 3.447944 GGAAAATGTAGTCCTCTCCTCGT 59.552 47.826 0.00 0.00 0.00 4.18
2388 2898 4.643784 GGAAAATGTAGTCCTCTCCTCGTA 59.356 45.833 0.00 0.00 0.00 3.43
2389 2899 5.450274 GGAAAATGTAGTCCTCTCCTCGTAC 60.450 48.000 0.00 0.00 0.00 3.67
2390 2900 3.928005 ATGTAGTCCTCTCCTCGTACA 57.072 47.619 0.00 0.00 0.00 2.90
2391 2901 3.708403 TGTAGTCCTCTCCTCGTACAA 57.292 47.619 0.00 0.00 0.00 2.41
2392 2902 3.341823 TGTAGTCCTCTCCTCGTACAAC 58.658 50.000 0.00 0.00 0.00 3.32
2393 2903 1.451067 AGTCCTCTCCTCGTACAACG 58.549 55.000 0.00 0.00 44.19 4.10
2394 2904 1.163554 GTCCTCTCCTCGTACAACGT 58.836 55.000 0.00 0.00 43.14 3.99
2395 2905 1.538950 GTCCTCTCCTCGTACAACGTT 59.461 52.381 0.00 0.00 43.14 3.99
2396 2906 1.538512 TCCTCTCCTCGTACAACGTTG 59.461 52.381 26.20 26.20 43.14 4.10
2414 2924 4.570772 ACGTTGGTGTGTAAGATCATATGC 59.429 41.667 0.00 0.00 0.00 3.14
2484 2994 8.579863 AGTAAAATTCTTCTCTCAATTTGTGGG 58.420 33.333 0.00 0.00 33.44 4.61
2485 2995 6.983906 AAATTCTTCTCTCAATTTGTGGGT 57.016 33.333 0.00 0.00 32.20 4.51
2497 3008 9.308000 TCTCAATTTGTGGGTTCTAATTGTATT 57.692 29.630 0.00 0.00 39.54 1.89
2544 3055 8.365399 TGTACATTTGTGCTATAGTCTAATGC 57.635 34.615 20.94 13.24 31.39 3.56
2559 3070 5.367937 AGTCTAATGCTGGACTGGTTATGAT 59.632 40.000 0.00 0.00 41.50 2.45
2562 3073 3.998913 TGCTGGACTGGTTATGATGAA 57.001 42.857 0.00 0.00 0.00 2.57
2566 3077 4.848357 CTGGACTGGTTATGATGAAAGGT 58.152 43.478 0.00 0.00 0.00 3.50
2572 3083 7.012421 GGACTGGTTATGATGAAAGGTCAATAC 59.988 40.741 0.00 0.00 37.30 1.89
2574 3085 7.554118 ACTGGTTATGATGAAAGGTCAATACAG 59.446 37.037 0.00 0.00 37.30 2.74
2580 3091 5.887598 TGATGAAAGGTCAATACAGGGAATG 59.112 40.000 0.00 0.00 37.30 2.67
2581 3092 5.255397 TGAAAGGTCAATACAGGGAATGT 57.745 39.130 0.00 0.00 46.45 2.71
2587 3098 4.887071 GGTCAATACAGGGAATGTTATGCA 59.113 41.667 0.00 0.00 39.96 3.96
2588 3099 5.221048 GGTCAATACAGGGAATGTTATGCAC 60.221 44.000 0.00 0.00 39.96 4.57
2609 3120 7.526041 TGCACTATATGAAGTTTATTGGGGAT 58.474 34.615 0.00 0.00 0.00 3.85
2612 3123 8.786898 CACTATATGAAGTTTATTGGGGATGTG 58.213 37.037 0.00 0.00 0.00 3.21
2613 3124 8.723365 ACTATATGAAGTTTATTGGGGATGTGA 58.277 33.333 0.00 0.00 0.00 3.58
2614 3125 9.745018 CTATATGAAGTTTATTGGGGATGTGAT 57.255 33.333 0.00 0.00 0.00 3.06
2615 3126 6.720112 ATGAAGTTTATTGGGGATGTGATG 57.280 37.500 0.00 0.00 0.00 3.07
2616 3127 5.825532 TGAAGTTTATTGGGGATGTGATGA 58.174 37.500 0.00 0.00 0.00 2.92
2617 3128 5.887598 TGAAGTTTATTGGGGATGTGATGAG 59.112 40.000 0.00 0.00 0.00 2.90
2618 3129 4.796606 AGTTTATTGGGGATGTGATGAGG 58.203 43.478 0.00 0.00 0.00 3.86
2619 3130 2.957402 TATTGGGGATGTGATGAGGC 57.043 50.000 0.00 0.00 0.00 4.70
2621 3132 1.891933 TTGGGGATGTGATGAGGCTA 58.108 50.000 0.00 0.00 0.00 3.93
2622 3133 1.427809 TGGGGATGTGATGAGGCTAG 58.572 55.000 0.00 0.00 0.00 3.42
2627 3138 3.834813 GGGATGTGATGAGGCTAGTCATA 59.165 47.826 0.00 3.14 37.29 2.15
2628 3139 4.469227 GGGATGTGATGAGGCTAGTCATAT 59.531 45.833 9.56 9.56 37.29 1.78
2629 3140 5.658634 GGGATGTGATGAGGCTAGTCATATA 59.341 44.000 9.71 0.56 37.29 0.86
2631 3142 7.310671 GGGATGTGATGAGGCTAGTCATATAAA 60.311 40.741 9.71 0.00 37.29 1.40
2632 3143 8.263640 GGATGTGATGAGGCTAGTCATATAAAT 58.736 37.037 9.71 0.00 37.29 1.40
2633 3144 9.096160 GATGTGATGAGGCTAGTCATATAAATG 57.904 37.037 9.71 0.00 37.29 2.32
2634 3145 7.389232 TGTGATGAGGCTAGTCATATAAATGG 58.611 38.462 0.00 0.00 37.29 3.16
2636 3147 7.880195 GTGATGAGGCTAGTCATATAAATGGTT 59.120 37.037 0.00 0.00 37.29 3.67
2638 3149 9.944376 GATGAGGCTAGTCATATAAATGGTTAA 57.056 33.333 0.00 0.00 37.29 2.01
2642 3153 9.914834 AGGCTAGTCATATAAATGGTTAAAACA 57.085 29.630 0.00 0.00 33.61 2.83
2643 3154 9.946165 GGCTAGTCATATAAATGGTTAAAACAC 57.054 33.333 0.00 0.00 33.61 3.32
2658 3169 8.831550 TGGTTAAAACACTTTTATTTGATTGCC 58.168 29.630 0.00 0.00 35.26 4.52
2659 3170 9.051679 GGTTAAAACACTTTTATTTGATTGCCT 57.948 29.630 0.00 0.00 35.26 4.75
2661 3172 7.406799 AAAACACTTTTATTTGATTGCCTCG 57.593 32.000 0.00 0.00 0.00 4.63
2662 3173 4.485163 ACACTTTTATTTGATTGCCTCGC 58.515 39.130 0.00 0.00 0.00 5.03
2663 3174 4.218417 ACACTTTTATTTGATTGCCTCGCT 59.782 37.500 0.00 0.00 0.00 4.93
2664 3175 5.414454 ACACTTTTATTTGATTGCCTCGCTA 59.586 36.000 0.00 0.00 0.00 4.26
2666 3177 6.470235 CACTTTTATTTGATTGCCTCGCTAAG 59.530 38.462 0.00 0.00 0.00 2.18
2669 3180 8.445275 TTTTATTTGATTGCCTCGCTAAGATA 57.555 30.769 0.00 0.00 0.00 1.98
2670 3181 5.931441 ATTTGATTGCCTCGCTAAGATAC 57.069 39.130 0.00 0.00 0.00 2.24
2671 3182 4.400529 TTGATTGCCTCGCTAAGATACA 57.599 40.909 0.00 0.00 0.00 2.29
2672 3183 4.400529 TGATTGCCTCGCTAAGATACAA 57.599 40.909 0.00 0.00 0.00 2.41
2673 3184 4.371786 TGATTGCCTCGCTAAGATACAAG 58.628 43.478 0.00 0.00 30.43 3.16
2674 3185 2.890808 TGCCTCGCTAAGATACAAGG 57.109 50.000 0.00 0.00 0.00 3.61
2675 3186 2.384828 TGCCTCGCTAAGATACAAGGA 58.615 47.619 0.00 0.00 0.00 3.36
2676 3187 2.764010 TGCCTCGCTAAGATACAAGGAA 59.236 45.455 0.00 0.00 0.00 3.36
2677 3188 3.181475 TGCCTCGCTAAGATACAAGGAAG 60.181 47.826 0.00 0.00 0.00 3.46
2678 3189 3.068307 GCCTCGCTAAGATACAAGGAAGA 59.932 47.826 0.00 0.00 0.00 2.87
2682 3193 5.651530 TCGCTAAGATACAAGGAAGAGTTG 58.348 41.667 0.00 0.00 0.00 3.16
2684 3195 5.869888 CGCTAAGATACAAGGAAGAGTTGTT 59.130 40.000 0.00 0.00 38.98 2.83
2685 3196 6.369065 CGCTAAGATACAAGGAAGAGTTGTTT 59.631 38.462 0.00 0.00 38.98 2.83
2686 3197 7.522374 GCTAAGATACAAGGAAGAGTTGTTTG 58.478 38.462 0.00 0.00 38.98 2.93
2688 3199 9.706691 CTAAGATACAAGGAAGAGTTGTTTGTA 57.293 33.333 0.00 0.00 38.98 2.41
2689 3200 7.964604 AGATACAAGGAAGAGTTGTTTGTAC 57.035 36.000 0.00 0.00 38.98 2.90
2690 3201 7.506114 AGATACAAGGAAGAGTTGTTTGTACA 58.494 34.615 0.00 0.00 38.98 2.90
2692 3203 6.619801 ACAAGGAAGAGTTGTTTGTACATC 57.380 37.500 0.00 0.00 34.37 3.06
2694 3205 7.506114 ACAAGGAAGAGTTGTTTGTACATCTA 58.494 34.615 0.00 0.00 34.37 1.98
2695 3206 7.657761 ACAAGGAAGAGTTGTTTGTACATCTAG 59.342 37.037 0.00 0.00 34.37 2.43
2697 3208 7.379750 AGGAAGAGTTGTTTGTACATCTAGAC 58.620 38.462 0.00 0.00 35.09 2.59
2698 3209 7.015292 AGGAAGAGTTGTTTGTACATCTAGACA 59.985 37.037 0.00 0.00 35.09 3.41
2699 3210 7.819900 GGAAGAGTTGTTTGTACATCTAGACAT 59.180 37.037 0.00 0.00 35.09 3.06
2705 3216 9.973246 GTTGTTTGTACATCTAGACATATTGTG 57.027 33.333 0.00 0.00 33.44 3.33
2706 3217 9.936759 TTGTTTGTACATCTAGACATATTGTGA 57.063 29.630 0.00 0.00 33.44 3.58
2707 3218 9.936759 TGTTTGTACATCTAGACATATTGTGAA 57.063 29.630 0.00 0.00 0.00 3.18
2728 3239 9.727627 TGTGAAATTATTTTGCAATTTTGAACC 57.272 25.926 0.00 0.00 36.09 3.62
2729 3240 9.949174 GTGAAATTATTTTGCAATTTTGAACCT 57.051 25.926 0.00 0.00 36.09 3.50
2734 3245 9.949174 ATTATTTTGCAATTTTGAACCTTTGAC 57.051 25.926 0.00 0.00 0.00 3.18
2735 3246 6.808008 TTTTGCAATTTTGAACCTTTGACA 57.192 29.167 0.00 0.00 0.00 3.58
2737 3248 8.498054 TTTTGCAATTTTGAACCTTTGACATA 57.502 26.923 0.00 0.00 0.00 2.29
2738 3249 8.674263 TTTGCAATTTTGAACCTTTGACATAT 57.326 26.923 0.00 0.00 0.00 1.78
2739 3250 7.887996 TGCAATTTTGAACCTTTGACATATC 57.112 32.000 0.00 0.00 0.00 1.63
2740 3251 7.669427 TGCAATTTTGAACCTTTGACATATCT 58.331 30.769 0.00 0.00 0.00 1.98
2742 3253 8.992073 GCAATTTTGAACCTTTGACATATCTTT 58.008 29.630 0.00 0.00 0.00 2.52
2749 3260 8.673711 TGAACCTTTGACATATCTTTATTTCCG 58.326 33.333 0.00 0.00 0.00 4.30
2750 3261 8.575649 AACCTTTGACATATCTTTATTTCCGT 57.424 30.769 0.00 0.00 0.00 4.69
2751 3262 8.575649 ACCTTTGACATATCTTTATTTCCGTT 57.424 30.769 0.00 0.00 0.00 4.44
2752 3263 9.020731 ACCTTTGACATATCTTTATTTCCGTTT 57.979 29.630 0.00 0.00 0.00 3.60
2753 3264 9.855021 CCTTTGACATATCTTTATTTCCGTTTT 57.145 29.630 0.00 0.00 0.00 2.43
2757 3268 9.368674 TGACATATCTTTATTTCCGTTTTACGA 57.631 29.630 0.05 0.00 46.05 3.43
2759 3270 9.977762 ACATATCTTTATTTCCGTTTTACGAAC 57.022 29.630 0.05 0.00 46.05 3.95
2760 3271 9.976255 CATATCTTTATTTCCGTTTTACGAACA 57.024 29.630 0.05 0.00 46.05 3.18
2764 3275 8.170553 TCTTTATTTCCGTTTTACGAACATAGC 58.829 33.333 0.05 0.00 46.05 2.97
2765 3276 5.866335 ATTTCCGTTTTACGAACATAGCA 57.134 34.783 0.05 0.00 46.05 3.49
2766 3277 4.914312 TTCCGTTTTACGAACATAGCAG 57.086 40.909 0.05 0.00 46.05 4.24
2767 3278 2.669434 TCCGTTTTACGAACATAGCAGC 59.331 45.455 0.05 0.00 46.05 5.25
2768 3279 2.671396 CCGTTTTACGAACATAGCAGCT 59.329 45.455 0.00 0.00 46.05 4.24
2770 3281 4.259690 CCGTTTTACGAACATAGCAGCTAC 60.260 45.833 3.59 0.00 46.05 3.58
2771 3282 4.325204 CGTTTTACGAACATAGCAGCTACA 59.675 41.667 3.59 0.00 46.05 2.74
2773 3284 6.241385 GTTTTACGAACATAGCAGCTACAAG 58.759 40.000 3.59 0.42 0.00 3.16
2775 3286 3.254060 ACGAACATAGCAGCTACAAGTG 58.746 45.455 3.59 1.46 0.00 3.16
2776 3287 3.056821 ACGAACATAGCAGCTACAAGTGA 60.057 43.478 3.59 0.00 0.00 3.41
2777 3288 3.304559 CGAACATAGCAGCTACAAGTGAC 59.695 47.826 3.59 2.50 0.00 3.67
2778 3289 3.252974 ACATAGCAGCTACAAGTGACC 57.747 47.619 3.59 0.00 0.00 4.02
2779 3290 2.834549 ACATAGCAGCTACAAGTGACCT 59.165 45.455 3.59 0.00 0.00 3.85
2780 3291 3.193263 CATAGCAGCTACAAGTGACCTG 58.807 50.000 3.59 0.00 0.00 4.00
2781 3292 0.322975 AGCAGCTACAAGTGACCTGG 59.677 55.000 0.00 0.00 0.00 4.45
2782 3293 0.674895 GCAGCTACAAGTGACCTGGG 60.675 60.000 0.00 0.00 0.00 4.45
2783 3294 0.687354 CAGCTACAAGTGACCTGGGT 59.313 55.000 0.00 0.00 0.00 4.51
2784 3295 0.687354 AGCTACAAGTGACCTGGGTG 59.313 55.000 0.00 0.00 0.00 4.61
2785 3296 0.955919 GCTACAAGTGACCTGGGTGC 60.956 60.000 0.00 0.00 0.00 5.01
2786 3297 0.321653 CTACAAGTGACCTGGGTGCC 60.322 60.000 0.00 0.00 0.00 5.01
2787 3298 1.057275 TACAAGTGACCTGGGTGCCA 61.057 55.000 0.00 0.00 0.00 4.92
2788 3299 1.152777 CAAGTGACCTGGGTGCCAA 60.153 57.895 0.00 0.00 30.80 4.52
2790 3301 0.188342 AAGTGACCTGGGTGCCAAAT 59.812 50.000 0.00 0.00 30.80 2.32
2791 3302 0.188342 AGTGACCTGGGTGCCAAATT 59.812 50.000 0.00 0.00 30.80 1.82
2792 3303 1.047801 GTGACCTGGGTGCCAAATTT 58.952 50.000 0.00 0.00 30.80 1.82
2796 3307 0.678950 CCTGGGTGCCAAATTTTCGT 59.321 50.000 0.00 0.00 30.80 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 6.964807 TTAGCATAGCATCCATTCACAAAT 57.035 33.333 0.00 0.00 0.00 2.32
45 46 9.702253 TCAAGTACCTCTCATAGTTCTTAGATT 57.298 33.333 0.00 0.00 0.00 2.40
101 102 1.661509 TCGCAGACAACAGCTCACG 60.662 57.895 0.00 0.00 0.00 4.35
154 155 1.963338 GGCGTCATGGCAGGCTATC 60.963 63.158 0.00 0.00 44.08 2.08
169 170 2.504681 GCCATTCTTGCGTTGGCG 60.505 61.111 0.00 0.00 45.75 5.69
183 184 4.927267 TCCTATTTCCTTCTCTTTGCCA 57.073 40.909 0.00 0.00 0.00 4.92
187 188 6.296720 CCACCTCTTCCTATTTCCTTCTCTTT 60.297 42.308 0.00 0.00 0.00 2.52
210 211 2.433604 TCAGCAAAAACTCAAATGGCCA 59.566 40.909 8.56 8.56 0.00 5.36
238 243 2.983803 ACAACGAAGCAACAAAACACAC 59.016 40.909 0.00 0.00 0.00 3.82
269 274 2.621556 ATAGCCTTCCCAAAGCCAAA 57.378 45.000 0.00 0.00 0.00 3.28
342 348 4.920999 ACATGGCCATGCATACACATATA 58.079 39.130 39.74 0.00 42.39 0.86
386 397 4.744570 CACTCTACACCTGCTCGATTAAA 58.255 43.478 0.00 0.00 0.00 1.52
391 402 1.595993 GGCACTCTACACCTGCTCGA 61.596 60.000 0.00 0.00 0.00 4.04
392 403 1.153745 GGCACTCTACACCTGCTCG 60.154 63.158 0.00 0.00 0.00 5.03
410 421 2.969827 GGCCATGTTTTGGTCCGG 59.030 61.111 0.00 0.00 44.99 5.14
445 456 8.426489 AGTAGTACACCATACAAAGAAACTTCA 58.574 33.333 2.52 0.00 0.00 3.02
484 499 0.544697 ACCAAGACCACGTCAGGTTT 59.455 50.000 0.00 0.00 43.38 3.27
526 552 4.201881 GGTTCAAAGGCGTGTAATCCATAC 60.202 45.833 0.00 0.00 34.92 2.39
527 553 3.942748 GGTTCAAAGGCGTGTAATCCATA 59.057 43.478 0.00 0.00 0.00 2.74
540 566 1.157870 ACAGCGACACGGTTCAAAGG 61.158 55.000 0.00 0.00 34.62 3.11
549 575 1.059838 CATGCATGACAGCGACACG 59.940 57.895 22.59 0.00 37.31 4.49
592 621 9.369904 CAACGGGAAGAAATATTCATCAATTTT 57.630 29.630 0.00 0.00 0.00 1.82
593 622 8.748412 TCAACGGGAAGAAATATTCATCAATTT 58.252 29.630 0.00 0.00 0.00 1.82
646 675 2.679837 CGACTAGGTAAGGCTACGTCAA 59.320 50.000 0.00 0.00 0.00 3.18
648 677 1.003008 GCGACTAGGTAAGGCTACGTC 60.003 57.143 0.00 0.00 0.00 4.34
649 678 1.020437 GCGACTAGGTAAGGCTACGT 58.980 55.000 0.00 0.00 0.00 3.57
650 679 0.310232 GGCGACTAGGTAAGGCTACG 59.690 60.000 0.00 0.00 0.00 3.51
676 712 2.356135 CGGTAGCAACAAACCTAGCAT 58.644 47.619 0.00 0.00 32.98 3.79
678 714 1.084289 CCGGTAGCAACAAACCTAGC 58.916 55.000 0.00 0.00 33.34 3.42
679 715 1.276989 TCCCGGTAGCAACAAACCTAG 59.723 52.381 0.00 0.00 33.34 3.02
680 716 1.276989 CTCCCGGTAGCAACAAACCTA 59.723 52.381 0.00 0.00 33.34 3.08
681 717 0.036306 CTCCCGGTAGCAACAAACCT 59.964 55.000 0.00 0.00 33.34 3.50
726 762 2.202797 CCGTCACGCATGCTAGCT 60.203 61.111 17.13 0.00 0.00 3.32
779 830 3.071479 ACCACACGTGCCTAATTAACAG 58.929 45.455 17.22 0.00 0.00 3.16
790 848 2.633657 CAGAGCAACCACACGTGC 59.366 61.111 17.22 0.00 0.00 5.34
810 868 7.667575 ACACTAGATTGACATGGTCTCTAAT 57.332 36.000 0.00 0.00 33.15 1.73
811 869 7.323420 CAACACTAGATTGACATGGTCTCTAA 58.677 38.462 0.00 0.00 33.15 2.10
812 870 6.628175 GCAACACTAGATTGACATGGTCTCTA 60.628 42.308 13.47 0.00 33.15 2.43
834 896 2.772077 TCCAAGGCGTAACATAGCAA 57.228 45.000 0.00 0.00 34.54 3.91
842 904 6.457257 GCGAATTAGTAAAATCCAAGGCGTAA 60.457 38.462 0.00 0.00 0.00 3.18
859 921 2.349886 GCTGTCCTGAGTTGCGAATTAG 59.650 50.000 0.00 0.00 0.00 1.73
861 923 1.160137 GCTGTCCTGAGTTGCGAATT 58.840 50.000 0.00 0.00 0.00 2.17
862 924 0.322975 AGCTGTCCTGAGTTGCGAAT 59.677 50.000 0.00 0.00 0.00 3.34
863 925 0.601046 CAGCTGTCCTGAGTTGCGAA 60.601 55.000 5.25 0.00 44.64 4.70
864 926 1.005748 CAGCTGTCCTGAGTTGCGA 60.006 57.895 5.25 0.00 44.64 5.10
865 927 2.675056 GCAGCTGTCCTGAGTTGCG 61.675 63.158 16.64 0.00 44.64 4.85
866 928 1.575576 CTGCAGCTGTCCTGAGTTGC 61.576 60.000 16.64 0.00 47.00 4.17
868 930 1.302351 GCTGCAGCTGTCCTGAGTT 60.302 57.895 31.33 0.00 44.64 3.01
869 931 2.346739 GCTGCAGCTGTCCTGAGT 59.653 61.111 31.33 0.00 44.64 3.41
870 932 2.436292 GGCTGCAGCTGTCCTGAG 60.436 66.667 35.82 5.16 44.64 3.35
871 933 2.743126 CTTGGCTGCAGCTGTCCTGA 62.743 60.000 35.82 14.13 44.64 3.86
872 934 2.281970 TTGGCTGCAGCTGTCCTG 60.282 61.111 35.82 4.75 44.67 3.86
873 935 2.033757 CTTGGCTGCAGCTGTCCT 59.966 61.111 35.82 0.00 41.70 3.85
874 936 3.745803 GCTTGGCTGCAGCTGTCC 61.746 66.667 35.82 20.88 41.70 4.02
875 937 2.672307 AGCTTGGCTGCAGCTGTC 60.672 61.111 35.82 21.24 46.25 3.51
901 963 4.401022 CCATGTTGGGAGTATGTATGCAT 58.599 43.478 3.79 3.79 34.97 3.96
902 964 3.819368 CCATGTTGGGAGTATGTATGCA 58.181 45.455 0.00 0.00 32.67 3.96
903 965 2.554032 GCCATGTTGGGAGTATGTATGC 59.446 50.000 0.00 0.00 38.19 3.14
909 971 0.998928 TGTGGCCATGTTGGGAGTAT 59.001 50.000 9.72 0.00 38.19 2.12
914 976 0.819582 GATTCTGTGGCCATGTTGGG 59.180 55.000 9.72 0.00 38.19 4.12
917 979 1.180029 GCTGATTCTGTGGCCATGTT 58.820 50.000 9.72 0.00 0.00 2.71
943 1005 1.537202 GCTAGCTTTGTGTGTTGAGGG 59.463 52.381 7.70 0.00 0.00 4.30
988 1070 3.376546 GGCCATTTTTCTGCCGGT 58.623 55.556 1.90 0.00 35.08 5.28
1008 1093 2.187100 AGGAAGCAGGAGGAAGAGAAG 58.813 52.381 0.00 0.00 0.00 2.85
1011 1096 2.168313 GAGAAGGAAGCAGGAGGAAGAG 59.832 54.545 0.00 0.00 0.00 2.85
1062 1147 3.959535 GGATCTGAAGATAGAGCCTGG 57.040 52.381 3.00 0.00 46.99 4.45
1069 1154 4.739793 AGAGGACCAGGATCTGAAGATAG 58.260 47.826 0.00 0.00 34.37 2.08
1072 1157 2.358721 GGAGAGGACCAGGATCTGAAGA 60.359 54.545 0.00 0.00 32.44 2.87
1077 1162 1.648568 TCTTGGAGAGGACCAGGATCT 59.351 52.381 0.00 0.00 40.28 2.75
1107 1192 3.330853 CGCGAGCTATTGTCCGCC 61.331 66.667 0.00 0.00 44.18 6.13
1180 1282 7.518211 GCACACAAGGGAAAATTGATTACAAAC 60.518 37.037 0.00 0.00 39.54 2.93
1191 1293 4.864704 AAATACGCACACAAGGGAAAAT 57.135 36.364 0.00 0.00 0.00 1.82
1196 1298 6.861065 ATAAGATAAATACGCACACAAGGG 57.139 37.500 0.00 0.00 0.00 3.95
1250 1372 2.496070 GGCCTTTGGGTCCTTACAAATC 59.504 50.000 0.00 0.00 36.16 2.17
1251 1373 2.536066 GGCCTTTGGGTCCTTACAAAT 58.464 47.619 0.00 0.00 36.16 2.32
1277 1399 0.539051 CCAGGAAGAAGTCATCCGCT 59.461 55.000 0.00 0.00 38.66 5.52
1283 1405 2.347490 GCCGCCAGGAAGAAGTCA 59.653 61.111 0.00 0.00 41.02 3.41
1361 1483 2.095059 GCCAGCAATCTTCATGACGTTT 60.095 45.455 0.00 0.00 0.00 3.60
1487 1609 0.321919 AGCCGACGTAGAGTGTACCA 60.322 55.000 0.00 0.00 0.00 3.25
1577 1699 1.003580 TGGAAGTGGATGAGTCCTTGC 59.996 52.381 0.00 0.00 45.32 4.01
1695 1817 3.446873 ACATCATCCGAGATCATAGGCTC 59.553 47.826 0.00 0.00 0.00 4.70
1828 1950 6.983890 ACAACCACAAGGAATACAATTTTGTC 59.016 34.615 0.00 0.00 39.39 3.18
1928 2423 8.604640 ATCATGAGCACTTGTTATGATAAGAG 57.395 34.615 0.09 0.00 36.88 2.85
1937 2445 7.282224 GGGTTATACAATCATGAGCACTTGTTA 59.718 37.037 15.54 7.38 34.02 2.41
1948 2456 8.827832 ATATCATTGGGGGTTATACAATCATG 57.172 34.615 0.00 0.00 32.89 3.07
1981 2491 7.831691 TTCACCAATCCAAACAAATTAGAGA 57.168 32.000 0.00 0.00 0.00 3.10
2022 2532 1.730851 GGCCTATACTAAGCCAGGGT 58.269 55.000 0.00 0.00 46.34 4.34
2027 2537 4.036616 GCTAGTATCGGCCTATACTAAGCC 59.963 50.000 27.94 18.88 41.88 4.35
2051 2561 8.004801 AGTTTCTTTAGAAAGGATCCTTCCAAA 58.995 33.333 27.20 22.25 45.30 3.28
2053 2563 7.091533 AGTTTCTTTAGAAAGGATCCTTCCA 57.908 36.000 27.20 12.43 45.30 3.53
2066 2576 8.707449 TGTAGGGAGTACAAAAGTTTCTTTAGA 58.293 33.333 0.00 0.00 38.78 2.10
2087 2597 5.338708 CCTGGCTTATATTCCCATCTGTAGG 60.339 48.000 0.00 0.00 0.00 3.18
2088 2598 5.738909 CCTGGCTTATATTCCCATCTGTAG 58.261 45.833 0.00 0.00 0.00 2.74
2089 2599 4.019321 GCCTGGCTTATATTCCCATCTGTA 60.019 45.833 12.43 0.00 0.00 2.74
2090 2600 3.245052 GCCTGGCTTATATTCCCATCTGT 60.245 47.826 12.43 0.00 0.00 3.41
2091 2601 3.245016 TGCCTGGCTTATATTCCCATCTG 60.245 47.826 21.03 0.00 0.00 2.90
2092 2602 2.988859 TGCCTGGCTTATATTCCCATCT 59.011 45.455 21.03 0.00 0.00 2.90
2093 2603 3.084786 GTGCCTGGCTTATATTCCCATC 58.915 50.000 21.03 0.00 0.00 3.51
2094 2604 2.553028 CGTGCCTGGCTTATATTCCCAT 60.553 50.000 21.03 0.00 0.00 4.00
2095 2605 1.202758 CGTGCCTGGCTTATATTCCCA 60.203 52.381 21.03 0.00 0.00 4.37
2096 2606 1.071699 TCGTGCCTGGCTTATATTCCC 59.928 52.381 21.03 0.00 0.00 3.97
2097 2607 2.037251 TCTCGTGCCTGGCTTATATTCC 59.963 50.000 21.03 0.00 0.00 3.01
2098 2608 3.386768 TCTCGTGCCTGGCTTATATTC 57.613 47.619 21.03 1.15 0.00 1.75
2099 2609 3.838244 TTCTCGTGCCTGGCTTATATT 57.162 42.857 21.03 0.00 0.00 1.28
2100 2610 4.357918 AATTCTCGTGCCTGGCTTATAT 57.642 40.909 21.03 3.23 0.00 0.86
2101 2611 3.838244 AATTCTCGTGCCTGGCTTATA 57.162 42.857 21.03 0.00 0.00 0.98
2102 2612 2.717639 AATTCTCGTGCCTGGCTTAT 57.282 45.000 21.03 1.48 0.00 1.73
2103 2613 2.489938 AAATTCTCGTGCCTGGCTTA 57.510 45.000 21.03 4.15 0.00 3.09
2104 2614 2.359900 CTAAATTCTCGTGCCTGGCTT 58.640 47.619 21.03 5.51 0.00 4.35
2105 2615 2.014068 GCTAAATTCTCGTGCCTGGCT 61.014 52.381 21.03 0.00 0.00 4.75
2106 2616 0.378610 GCTAAATTCTCGTGCCTGGC 59.621 55.000 12.87 12.87 0.00 4.85
2107 2617 1.936547 GAGCTAAATTCTCGTGCCTGG 59.063 52.381 0.00 0.00 0.00 4.45
2108 2618 1.590238 CGAGCTAAATTCTCGTGCCTG 59.410 52.381 6.83 0.00 45.86 4.85
2109 2619 1.927895 CGAGCTAAATTCTCGTGCCT 58.072 50.000 6.83 0.00 45.86 4.75
2115 2625 7.452630 AGTTAAATCGACGAGCTAAATTCTC 57.547 36.000 3.01 0.00 0.00 2.87
2116 2626 7.167801 GCTAGTTAAATCGACGAGCTAAATTCT 59.832 37.037 3.01 0.79 40.94 2.40
2117 2627 7.043590 TGCTAGTTAAATCGACGAGCTAAATTC 60.044 37.037 3.01 0.53 43.40 2.17
2118 2628 6.755141 TGCTAGTTAAATCGACGAGCTAAATT 59.245 34.615 3.01 0.00 43.40 1.82
2119 2629 6.270815 TGCTAGTTAAATCGACGAGCTAAAT 58.729 36.000 3.01 5.44 43.40 1.40
2120 2630 5.643664 TGCTAGTTAAATCGACGAGCTAAA 58.356 37.500 3.01 0.00 43.40 1.85
2121 2631 5.239359 TGCTAGTTAAATCGACGAGCTAA 57.761 39.130 3.01 0.55 43.40 3.09
2122 2632 4.888038 TGCTAGTTAAATCGACGAGCTA 57.112 40.909 3.01 0.00 43.40 3.32
2123 2633 3.777465 TGCTAGTTAAATCGACGAGCT 57.223 42.857 3.01 0.00 43.40 4.09
2124 2634 4.835199 TTTGCTAGTTAAATCGACGAGC 57.165 40.909 3.01 0.00 43.33 5.03
2125 2635 6.569228 TGATTTGCTAGTTAAATCGACGAG 57.431 37.500 20.08 0.00 43.88 4.18
2126 2636 6.933130 CATGATTTGCTAGTTAAATCGACGA 58.067 36.000 20.08 0.00 43.88 4.20
2217 2727 2.353208 GCCGTGTTCCATGCCATAAAAA 60.353 45.455 0.00 0.00 0.00 1.94
2218 2728 1.203523 GCCGTGTTCCATGCCATAAAA 59.796 47.619 0.00 0.00 0.00 1.52
2219 2729 0.814457 GCCGTGTTCCATGCCATAAA 59.186 50.000 0.00 0.00 0.00 1.40
2220 2730 1.034838 GGCCGTGTTCCATGCCATAA 61.035 55.000 0.00 0.00 43.46 1.90
2221 2731 1.453015 GGCCGTGTTCCATGCCATA 60.453 57.895 0.00 0.00 43.46 2.74
2222 2732 2.755469 GGCCGTGTTCCATGCCAT 60.755 61.111 0.00 0.00 43.46 4.40
2223 2733 3.918253 GAGGCCGTGTTCCATGCCA 62.918 63.158 0.00 0.00 46.45 4.92
2224 2734 3.134127 GAGGCCGTGTTCCATGCC 61.134 66.667 0.00 0.00 44.35 4.40
2225 2735 2.359850 TGAGGCCGTGTTCCATGC 60.360 61.111 0.00 0.00 0.00 4.06
2226 2736 0.249120 TAGTGAGGCCGTGTTCCATG 59.751 55.000 0.00 0.00 0.00 3.66
2227 2737 0.537188 CTAGTGAGGCCGTGTTCCAT 59.463 55.000 0.00 0.00 0.00 3.41
2228 2738 0.830444 ACTAGTGAGGCCGTGTTCCA 60.830 55.000 0.00 0.00 0.00 3.53
2229 2739 0.108756 GACTAGTGAGGCCGTGTTCC 60.109 60.000 0.00 0.00 0.00 3.62
2230 2740 0.456312 CGACTAGTGAGGCCGTGTTC 60.456 60.000 0.00 0.00 0.00 3.18
2231 2741 0.892358 TCGACTAGTGAGGCCGTGTT 60.892 55.000 0.00 0.00 0.00 3.32
2232 2742 0.892358 TTCGACTAGTGAGGCCGTGT 60.892 55.000 0.00 0.00 0.00 4.49
2233 2743 0.456221 ATTCGACTAGTGAGGCCGTG 59.544 55.000 0.00 0.00 0.00 4.94
2234 2744 0.739561 GATTCGACTAGTGAGGCCGT 59.260 55.000 0.00 0.00 0.00 5.68
2235 2745 0.317103 CGATTCGACTAGTGAGGCCG 60.317 60.000 0.00 0.00 0.00 6.13
2236 2746 1.022735 TCGATTCGACTAGTGAGGCC 58.977 55.000 4.29 0.00 0.00 5.19
2237 2747 2.355132 TCTTCGATTCGACTAGTGAGGC 59.645 50.000 8.55 0.00 34.89 4.70
2238 2748 3.242804 GGTCTTCGATTCGACTAGTGAGG 60.243 52.174 8.55 0.00 34.89 3.86
2239 2749 3.623960 AGGTCTTCGATTCGACTAGTGAG 59.376 47.826 8.55 2.57 34.89 3.51
2240 2750 3.607741 AGGTCTTCGATTCGACTAGTGA 58.392 45.455 8.55 0.00 34.89 3.41
2241 2751 5.481200 TTAGGTCTTCGATTCGACTAGTG 57.519 43.478 8.55 0.00 34.89 2.74
2242 2752 5.879223 TCTTTAGGTCTTCGATTCGACTAGT 59.121 40.000 8.55 0.00 34.89 2.57
2243 2753 6.183360 TGTCTTTAGGTCTTCGATTCGACTAG 60.183 42.308 8.55 4.84 34.89 2.57
2244 2754 5.645067 TGTCTTTAGGTCTTCGATTCGACTA 59.355 40.000 8.55 4.26 34.89 2.59
2245 2755 4.458295 TGTCTTTAGGTCTTCGATTCGACT 59.542 41.667 8.55 5.26 34.89 4.18
2246 2756 4.558080 GTGTCTTTAGGTCTTCGATTCGAC 59.442 45.833 8.55 0.00 34.89 4.20
2247 2757 4.216902 TGTGTCTTTAGGTCTTCGATTCGA 59.783 41.667 4.29 4.29 0.00 3.71
2248 2758 4.482386 TGTGTCTTTAGGTCTTCGATTCG 58.518 43.478 0.00 0.00 0.00 3.34
2249 2759 5.220491 GCATGTGTCTTTAGGTCTTCGATTC 60.220 44.000 0.00 0.00 0.00 2.52
2250 2760 4.631813 GCATGTGTCTTTAGGTCTTCGATT 59.368 41.667 0.00 0.00 0.00 3.34
2251 2761 4.184629 GCATGTGTCTTTAGGTCTTCGAT 58.815 43.478 0.00 0.00 0.00 3.59
2252 2762 3.585862 GCATGTGTCTTTAGGTCTTCGA 58.414 45.455 0.00 0.00 0.00 3.71
2253 2763 2.673368 GGCATGTGTCTTTAGGTCTTCG 59.327 50.000 0.00 0.00 0.00 3.79
2254 2764 3.010420 GGGCATGTGTCTTTAGGTCTTC 58.990 50.000 0.00 0.00 0.00 2.87
2255 2765 2.615493 CGGGCATGTGTCTTTAGGTCTT 60.615 50.000 0.00 0.00 0.00 3.01
2256 2766 1.066143 CGGGCATGTGTCTTTAGGTCT 60.066 52.381 0.00 0.00 0.00 3.85
2257 2767 1.066430 TCGGGCATGTGTCTTTAGGTC 60.066 52.381 0.00 0.00 0.00 3.85
2258 2768 0.981183 TCGGGCATGTGTCTTTAGGT 59.019 50.000 0.00 0.00 0.00 3.08
2259 2769 1.066143 AGTCGGGCATGTGTCTTTAGG 60.066 52.381 0.00 0.00 0.00 2.69
2260 2770 2.002586 CAGTCGGGCATGTGTCTTTAG 58.997 52.381 0.00 0.00 0.00 1.85
2261 2771 1.621317 TCAGTCGGGCATGTGTCTTTA 59.379 47.619 0.00 0.00 0.00 1.85
2262 2772 0.396435 TCAGTCGGGCATGTGTCTTT 59.604 50.000 0.00 0.00 0.00 2.52
2263 2773 0.615331 ATCAGTCGGGCATGTGTCTT 59.385 50.000 0.00 0.00 0.00 3.01
2264 2774 1.485124 TATCAGTCGGGCATGTGTCT 58.515 50.000 0.00 0.00 0.00 3.41
2265 2775 2.533266 ATATCAGTCGGGCATGTGTC 57.467 50.000 0.00 0.00 0.00 3.67
2266 2776 3.206150 GAAATATCAGTCGGGCATGTGT 58.794 45.455 0.00 0.00 0.00 3.72
2267 2777 2.549754 GGAAATATCAGTCGGGCATGTG 59.450 50.000 0.00 0.00 0.00 3.21
2268 2778 2.172505 TGGAAATATCAGTCGGGCATGT 59.827 45.455 0.00 0.00 0.00 3.21
2269 2779 2.849942 TGGAAATATCAGTCGGGCATG 58.150 47.619 0.00 0.00 0.00 4.06
2270 2780 3.072915 TGATGGAAATATCAGTCGGGCAT 59.927 43.478 0.00 0.00 32.39 4.40
2271 2781 2.437651 TGATGGAAATATCAGTCGGGCA 59.562 45.455 0.00 0.00 32.39 5.36
2272 2782 3.070018 CTGATGGAAATATCAGTCGGGC 58.930 50.000 7.43 0.00 45.70 6.13
2279 2789 7.513781 TCATACTCCCTTCTGATGGAAATATCA 59.486 37.037 10.93 0.00 35.83 2.15
2280 2790 7.911651 TCATACTCCCTTCTGATGGAAATATC 58.088 38.462 10.93 0.00 33.07 1.63
2281 2791 7.878621 TCATACTCCCTTCTGATGGAAATAT 57.121 36.000 10.93 3.68 33.07 1.28
2282 2792 7.878621 ATCATACTCCCTTCTGATGGAAATA 57.121 36.000 10.93 1.75 33.07 1.40
2283 2793 6.776887 ATCATACTCCCTTCTGATGGAAAT 57.223 37.500 10.93 0.00 33.07 2.17
2284 2794 6.388100 AGAATCATACTCCCTTCTGATGGAAA 59.612 38.462 10.93 0.00 33.07 3.13
2285 2795 5.907662 AGAATCATACTCCCTTCTGATGGAA 59.092 40.000 10.93 0.00 0.00 3.53
2286 2796 5.471424 AGAATCATACTCCCTTCTGATGGA 58.529 41.667 10.93 3.98 0.00 3.41
2287 2797 5.822132 AGAATCATACTCCCTTCTGATGG 57.178 43.478 2.69 2.69 0.00 3.51
2288 2798 6.873076 GCTAAGAATCATACTCCCTTCTGATG 59.127 42.308 0.00 0.00 0.00 3.07
2289 2799 6.786959 AGCTAAGAATCATACTCCCTTCTGAT 59.213 38.462 0.00 0.00 0.00 2.90
2290 2800 6.139671 AGCTAAGAATCATACTCCCTTCTGA 58.860 40.000 0.00 0.00 0.00 3.27
2291 2801 6.418057 AGCTAAGAATCATACTCCCTTCTG 57.582 41.667 0.00 0.00 0.00 3.02
2292 2802 8.554490 TTTAGCTAAGAATCATACTCCCTTCT 57.446 34.615 6.24 0.00 0.00 2.85
2293 2803 9.785982 AATTTAGCTAAGAATCATACTCCCTTC 57.214 33.333 6.24 0.00 0.00 3.46
2296 2806 9.660180 CCTAATTTAGCTAAGAATCATACTCCC 57.340 37.037 6.24 0.00 0.00 4.30
2307 2817 7.455008 CCCCTCTATGACCTAATTTAGCTAAGA 59.545 40.741 6.24 0.00 0.00 2.10
2324 2834 3.515901 GAGTACCATTAGCCCCCTCTATG 59.484 52.174 0.00 0.00 0.00 2.23
2325 2835 3.406498 AGAGTACCATTAGCCCCCTCTAT 59.594 47.826 0.00 0.00 0.00 1.98
2349 2859 4.503714 TTTTCCAGGGGAAGCTACATAG 57.496 45.455 0.00 0.00 43.06 2.23
2351 2861 3.011708 ACATTTTCCAGGGGAAGCTACAT 59.988 43.478 0.00 0.00 43.06 2.29
2360 2870 2.846827 AGAGGACTACATTTTCCAGGGG 59.153 50.000 0.00 0.00 33.92 4.79
2363 2873 4.440802 CGAGGAGAGGACTACATTTTCCAG 60.441 50.000 0.00 0.00 33.92 3.86
2366 2876 4.722361 ACGAGGAGAGGACTACATTTTC 57.278 45.455 0.00 0.00 0.00 2.29
2370 2880 3.928005 TGTACGAGGAGAGGACTACAT 57.072 47.619 0.00 0.00 0.00 2.29
2375 2885 1.163554 ACGTTGTACGAGGAGAGGAC 58.836 55.000 9.78 0.00 46.05 3.85
2376 2886 1.538512 CAACGTTGTACGAGGAGAGGA 59.461 52.381 20.21 0.00 46.05 3.71
2377 2887 1.402456 CCAACGTTGTACGAGGAGAGG 60.402 57.143 25.63 3.06 46.05 3.69
2379 2889 1.001048 CACCAACGTTGTACGAGGAGA 60.001 52.381 25.63 0.00 46.05 3.71
2380 2890 1.269413 ACACCAACGTTGTACGAGGAG 60.269 52.381 25.63 11.14 46.05 3.69
2381 2891 0.746063 ACACCAACGTTGTACGAGGA 59.254 50.000 25.63 0.00 46.05 3.71
2382 2892 0.856641 CACACCAACGTTGTACGAGG 59.143 55.000 25.63 12.60 46.05 4.63
2383 2893 1.563111 ACACACCAACGTTGTACGAG 58.437 50.000 25.63 13.02 46.05 4.18
2386 2896 4.746115 TGATCTTACACACCAACGTTGTAC 59.254 41.667 25.63 2.29 0.00 2.90
2387 2897 4.946445 TGATCTTACACACCAACGTTGTA 58.054 39.130 25.63 10.08 0.00 2.41
2388 2898 3.799366 TGATCTTACACACCAACGTTGT 58.201 40.909 25.63 11.13 0.00 3.32
2389 2899 6.477742 CATATGATCTTACACACCAACGTTG 58.522 40.000 21.47 21.47 0.00 4.10
2390 2900 5.064707 GCATATGATCTTACACACCAACGTT 59.935 40.000 6.97 0.00 0.00 3.99
2391 2901 4.570772 GCATATGATCTTACACACCAACGT 59.429 41.667 6.97 0.00 0.00 3.99
2392 2902 4.318050 CGCATATGATCTTACACACCAACG 60.318 45.833 6.97 0.00 0.00 4.10
2393 2903 4.552767 GCGCATATGATCTTACACACCAAC 60.553 45.833 6.97 0.00 0.00 3.77
2394 2904 3.559655 GCGCATATGATCTTACACACCAA 59.440 43.478 6.97 0.00 0.00 3.67
2395 2905 3.130633 GCGCATATGATCTTACACACCA 58.869 45.455 6.97 0.00 0.00 4.17
2396 2906 3.393800 AGCGCATATGATCTTACACACC 58.606 45.455 11.47 0.00 0.00 4.16
2414 2924 7.740519 TTGATCATAATCACATACGATAGCG 57.259 36.000 0.00 0.00 41.62 4.26
2459 2969 8.360390 ACCCACAAATTGAGAGAAGAATTTTAC 58.640 33.333 0.00 0.00 30.94 2.01
2523 3034 6.707608 TCCAGCATTAGACTATAGCACAAATG 59.292 38.462 0.00 6.51 0.00 2.32
2544 3055 4.848357 ACCTTTCATCATAACCAGTCCAG 58.152 43.478 0.00 0.00 0.00 3.86
2559 3070 5.255397 ACATTCCCTGTATTGACCTTTCA 57.745 39.130 0.00 0.00 35.91 2.69
2562 3073 5.594317 GCATAACATTCCCTGTATTGACCTT 59.406 40.000 0.00 0.00 36.98 3.50
2566 3077 5.754782 AGTGCATAACATTCCCTGTATTGA 58.245 37.500 0.00 0.00 36.98 2.57
2572 3083 7.663081 ACTTCATATAGTGCATAACATTCCCTG 59.337 37.037 0.00 0.00 0.00 4.45
2574 3085 7.986085 ACTTCATATAGTGCATAACATTCCC 57.014 36.000 0.00 0.00 0.00 3.97
2581 3092 9.295825 CCCCAATAAACTTCATATAGTGCATAA 57.704 33.333 0.00 0.00 0.00 1.90
2587 3098 8.723365 TCACATCCCCAATAAACTTCATATAGT 58.277 33.333 0.00 0.00 0.00 2.12
2588 3099 9.745018 ATCACATCCCCAATAAACTTCATATAG 57.255 33.333 0.00 0.00 0.00 1.31
2601 3112 1.229131 AGCCTCATCACATCCCCAAT 58.771 50.000 0.00 0.00 0.00 3.16
2603 3114 1.344393 ACTAGCCTCATCACATCCCCA 60.344 52.381 0.00 0.00 0.00 4.96
2604 3115 1.346068 GACTAGCCTCATCACATCCCC 59.654 57.143 0.00 0.00 0.00 4.81
2605 3116 2.042464 TGACTAGCCTCATCACATCCC 58.958 52.381 0.00 0.00 0.00 3.85
2609 3120 7.016563 ACCATTTATATGACTAGCCTCATCACA 59.983 37.037 0.00 0.00 32.86 3.58
2612 3123 9.944376 TTAACCATTTATATGACTAGCCTCATC 57.056 33.333 0.00 0.00 32.86 2.92
2616 3127 9.914834 TGTTTTAACCATTTATATGACTAGCCT 57.085 29.630 0.00 0.00 33.37 4.58
2617 3128 9.946165 GTGTTTTAACCATTTATATGACTAGCC 57.054 33.333 0.00 0.00 33.37 3.93
2632 3143 8.831550 GGCAATCAAATAAAAGTGTTTTAACCA 58.168 29.630 0.00 0.00 38.48 3.67
2633 3144 9.051679 AGGCAATCAAATAAAAGTGTTTTAACC 57.948 29.630 0.00 0.00 38.48 2.85
2636 3147 7.115663 GCGAGGCAATCAAATAAAAGTGTTTTA 59.884 33.333 0.00 0.00 39.24 1.52
2638 3149 5.405269 GCGAGGCAATCAAATAAAAGTGTTT 59.595 36.000 0.00 0.00 0.00 2.83
2639 3150 4.923281 GCGAGGCAATCAAATAAAAGTGTT 59.077 37.500 0.00 0.00 0.00 3.32
2640 3151 4.218417 AGCGAGGCAATCAAATAAAAGTGT 59.782 37.500 0.00 0.00 0.00 3.55
2642 3153 6.374333 TCTTAGCGAGGCAATCAAATAAAAGT 59.626 34.615 0.00 0.00 0.00 2.66
2643 3154 6.785191 TCTTAGCGAGGCAATCAAATAAAAG 58.215 36.000 0.00 0.00 0.00 2.27
2644 3155 6.751514 TCTTAGCGAGGCAATCAAATAAAA 57.248 33.333 0.00 0.00 0.00 1.52
2645 3156 6.942532 ATCTTAGCGAGGCAATCAAATAAA 57.057 33.333 0.00 0.00 0.00 1.40
2646 3157 6.989759 TGTATCTTAGCGAGGCAATCAAATAA 59.010 34.615 0.00 0.00 0.00 1.40
2650 3161 4.400529 TGTATCTTAGCGAGGCAATCAA 57.599 40.909 0.00 0.00 0.00 2.57
2652 3163 3.743396 CCTTGTATCTTAGCGAGGCAATC 59.257 47.826 0.00 0.00 30.33 2.67
2653 3164 3.388024 TCCTTGTATCTTAGCGAGGCAAT 59.612 43.478 0.00 0.00 36.46 3.56
2654 3165 2.764010 TCCTTGTATCTTAGCGAGGCAA 59.236 45.455 0.00 0.00 36.46 4.52
2655 3166 2.384828 TCCTTGTATCTTAGCGAGGCA 58.615 47.619 0.00 0.00 36.46 4.75
2656 3167 3.068307 TCTTCCTTGTATCTTAGCGAGGC 59.932 47.826 0.00 0.00 36.46 4.70
2657 3168 4.339814 ACTCTTCCTTGTATCTTAGCGAGG 59.660 45.833 0.00 0.00 37.57 4.63
2658 3169 5.508200 ACTCTTCCTTGTATCTTAGCGAG 57.492 43.478 0.00 0.00 0.00 5.03
2659 3170 5.185249 ACAACTCTTCCTTGTATCTTAGCGA 59.815 40.000 0.00 0.00 29.81 4.93
2660 3171 5.411781 ACAACTCTTCCTTGTATCTTAGCG 58.588 41.667 0.00 0.00 29.81 4.26
2661 3172 7.173390 ACAAACAACTCTTCCTTGTATCTTAGC 59.827 37.037 0.00 0.00 31.43 3.09
2662 3173 8.608844 ACAAACAACTCTTCCTTGTATCTTAG 57.391 34.615 0.00 0.00 31.43 2.18
2663 3174 9.485206 GTACAAACAACTCTTCCTTGTATCTTA 57.515 33.333 0.00 0.00 35.56 2.10
2664 3175 7.990886 TGTACAAACAACTCTTCCTTGTATCTT 59.009 33.333 0.00 0.00 35.56 2.40
2666 3177 7.724305 TGTACAAACAACTCTTCCTTGTATC 57.276 36.000 0.00 0.00 35.56 2.24
2669 3180 6.357367 AGATGTACAAACAACTCTTCCTTGT 58.643 36.000 0.00 0.00 39.58 3.16
2670 3181 6.867662 AGATGTACAAACAACTCTTCCTTG 57.132 37.500 0.00 0.00 39.58 3.61
2671 3182 7.873505 GTCTAGATGTACAAACAACTCTTCCTT 59.126 37.037 0.00 0.00 39.28 3.36
2672 3183 7.015292 TGTCTAGATGTACAAACAACTCTTCCT 59.985 37.037 0.00 0.00 39.28 3.36
2673 3184 7.152645 TGTCTAGATGTACAAACAACTCTTCC 58.847 38.462 0.00 0.00 39.28 3.46
2674 3185 8.764524 ATGTCTAGATGTACAAACAACTCTTC 57.235 34.615 0.00 0.00 39.28 2.87
2678 3189 9.944376 ACAATATGTCTAGATGTACAAACAACT 57.056 29.630 0.00 0.00 41.23 3.16
2702 3213 9.727627 GGTTCAAAATTGCAAAATAATTTCACA 57.272 25.926 1.71 0.00 36.89 3.58
2703 3214 9.949174 AGGTTCAAAATTGCAAAATAATTTCAC 57.051 25.926 1.71 0.00 36.89 3.18
2708 3219 9.949174 GTCAAAGGTTCAAAATTGCAAAATAAT 57.051 25.926 1.71 0.00 0.00 1.28
2709 3220 8.950210 TGTCAAAGGTTCAAAATTGCAAAATAA 58.050 25.926 1.71 0.00 0.00 1.40
2711 3222 7.388460 TGTCAAAGGTTCAAAATTGCAAAAT 57.612 28.000 1.71 0.00 0.00 1.82
2714 3225 8.149647 AGATATGTCAAAGGTTCAAAATTGCAA 58.850 29.630 0.00 0.00 0.00 4.08
2715 3226 7.669427 AGATATGTCAAAGGTTCAAAATTGCA 58.331 30.769 0.00 0.00 0.00 4.08
2716 3227 8.538409 AAGATATGTCAAAGGTTCAAAATTGC 57.462 30.769 0.00 0.00 0.00 3.56
2723 3234 8.673711 CGGAAATAAAGATATGTCAAAGGTTCA 58.326 33.333 0.00 0.00 28.59 3.18
2724 3235 8.674607 ACGGAAATAAAGATATGTCAAAGGTTC 58.325 33.333 0.00 0.00 28.59 3.62
2725 3236 8.575649 ACGGAAATAAAGATATGTCAAAGGTT 57.424 30.769 0.00 0.00 28.59 3.50
2726 3237 8.575649 AACGGAAATAAAGATATGTCAAAGGT 57.424 30.769 0.00 0.00 28.59 3.50
2727 3238 9.855021 AAAACGGAAATAAAGATATGTCAAAGG 57.145 29.630 0.00 0.00 28.59 3.11
2730 3241 9.976255 CGTAAAACGGAAATAAAGATATGTCAA 57.024 29.630 0.00 0.00 38.08 3.18
2731 3242 9.368674 TCGTAAAACGGAAATAAAGATATGTCA 57.631 29.630 0.00 0.00 42.81 3.58
2733 3244 9.977762 GTTCGTAAAACGGAAATAAAGATATGT 57.022 29.630 0.00 0.00 42.81 2.29
2734 3245 9.976255 TGTTCGTAAAACGGAAATAAAGATATG 57.024 29.630 0.00 0.00 42.81 1.78
2738 3249 8.170553 GCTATGTTCGTAAAACGGAAATAAAGA 58.829 33.333 0.00 0.00 42.81 2.52
2739 3250 7.958567 TGCTATGTTCGTAAAACGGAAATAAAG 59.041 33.333 0.00 0.00 42.81 1.85
2740 3251 7.804712 TGCTATGTTCGTAAAACGGAAATAAA 58.195 30.769 0.00 0.00 42.81 1.40
2742 3253 6.455913 GCTGCTATGTTCGTAAAACGGAAATA 60.456 38.462 0.00 0.00 42.81 1.40
2743 3254 5.672819 GCTGCTATGTTCGTAAAACGGAAAT 60.673 40.000 0.00 0.00 42.81 2.17
2744 3255 4.377635 GCTGCTATGTTCGTAAAACGGAAA 60.378 41.667 0.00 0.00 42.81 3.13
2745 3256 3.123959 GCTGCTATGTTCGTAAAACGGAA 59.876 43.478 0.00 0.00 42.81 4.30
2746 3257 2.669434 GCTGCTATGTTCGTAAAACGGA 59.331 45.455 0.00 0.00 42.81 4.69
2747 3258 2.671396 AGCTGCTATGTTCGTAAAACGG 59.329 45.455 0.00 0.00 42.81 4.44
2748 3259 3.991605 AGCTGCTATGTTCGTAAAACG 57.008 42.857 0.00 0.00 44.19 3.60
2749 3260 5.773239 TGTAGCTGCTATGTTCGTAAAAC 57.227 39.130 13.20 0.00 0.00 2.43
2750 3261 5.929992 ACTTGTAGCTGCTATGTTCGTAAAA 59.070 36.000 13.20 0.00 0.00 1.52
2751 3262 5.347635 CACTTGTAGCTGCTATGTTCGTAAA 59.652 40.000 13.20 0.00 0.00 2.01
2752 3263 4.862574 CACTTGTAGCTGCTATGTTCGTAA 59.137 41.667 13.20 0.35 0.00 3.18
2753 3264 4.157105 TCACTTGTAGCTGCTATGTTCGTA 59.843 41.667 13.20 0.00 0.00 3.43
2755 3266 3.304559 GTCACTTGTAGCTGCTATGTTCG 59.695 47.826 13.20 2.68 0.00 3.95
2757 3268 3.261897 AGGTCACTTGTAGCTGCTATGTT 59.738 43.478 13.20 0.00 0.00 2.71
2758 3269 2.834549 AGGTCACTTGTAGCTGCTATGT 59.165 45.455 13.20 9.46 0.00 2.29
2759 3270 3.193263 CAGGTCACTTGTAGCTGCTATG 58.807 50.000 13.20 7.14 35.86 2.23
2760 3271 2.169352 CCAGGTCACTTGTAGCTGCTAT 59.831 50.000 13.20 0.00 40.35 2.97
2761 3272 1.550524 CCAGGTCACTTGTAGCTGCTA 59.449 52.381 5.02 5.02 40.35 3.49
2763 3274 0.674895 CCCAGGTCACTTGTAGCTGC 60.675 60.000 0.00 0.00 40.35 5.25
2764 3275 0.687354 ACCCAGGTCACTTGTAGCTG 59.313 55.000 0.00 0.00 41.14 4.24
2765 3276 0.687354 CACCCAGGTCACTTGTAGCT 59.313 55.000 0.00 0.00 0.00 3.32
2766 3277 0.955919 GCACCCAGGTCACTTGTAGC 60.956 60.000 0.00 0.00 0.00 3.58
2767 3278 0.321653 GGCACCCAGGTCACTTGTAG 60.322 60.000 0.00 0.00 0.00 2.74
2768 3279 1.057275 TGGCACCCAGGTCACTTGTA 61.057 55.000 0.00 0.00 0.00 2.41
2770 3281 0.754957 TTTGGCACCCAGGTCACTTG 60.755 55.000 0.00 0.00 33.81 3.16
2771 3282 0.188342 ATTTGGCACCCAGGTCACTT 59.812 50.000 0.00 0.00 33.81 3.16
2773 3284 1.047801 AAATTTGGCACCCAGGTCAC 58.952 50.000 0.00 0.00 33.81 3.67
2775 3286 1.336795 CGAAAATTTGGCACCCAGGTC 60.337 52.381 0.00 0.00 33.81 3.85
2776 3287 0.678950 CGAAAATTTGGCACCCAGGT 59.321 50.000 0.00 0.00 33.81 4.00
2777 3288 0.678950 ACGAAAATTTGGCACCCAGG 59.321 50.000 0.00 0.00 33.81 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.