Multiple sequence alignment - TraesCS3A01G010800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G010800 chr3A 100.000 2537 0 0 1 2537 9049924 9052460 0.000000e+00 4686
1 TraesCS3A01G010800 chr3A 87.855 1161 99 21 681 1810 9007079 9008228 0.000000e+00 1325
2 TraesCS3A01G010800 chr3A 85.260 597 57 15 843 1427 8991114 8991691 1.010000e-163 586
3 TraesCS3A01G010800 chr3A 84.590 597 61 15 843 1427 8961599 8962176 4.740000e-157 564
4 TraesCS3A01G010800 chr3A 81.119 715 68 33 742 1427 8944855 8945531 6.260000e-141 510
5 TraesCS3A01G010800 chr3A 92.336 274 18 3 396 668 23631277 23631548 1.100000e-103 387
6 TraesCS3A01G010800 chr3A 85.915 355 30 6 1472 1810 8945633 8945983 6.670000e-96 361
7 TraesCS3A01G010800 chr3A 85.915 355 30 8 1472 1810 8962277 8962627 6.670000e-96 361
8 TraesCS3A01G010800 chr3A 85.915 355 30 8 1472 1810 8979106 8979456 6.670000e-96 361
9 TraesCS3A01G010800 chr3A 82.093 430 49 12 1 403 202598287 202598715 2.420000e-90 342
10 TraesCS3A01G010800 chr3B 86.496 1481 146 28 709 2174 5851622 5850181 0.000000e+00 1578
11 TraesCS3A01G010800 chr3B 80.866 1155 150 31 706 1810 5773749 5772616 0.000000e+00 843
12 TraesCS3A01G010800 chr3B 84.174 853 97 23 764 1601 6047824 6048653 0.000000e+00 793
13 TraesCS3A01G010800 chr3B 87.518 689 65 12 1862 2537 5867099 5866419 0.000000e+00 776
14 TraesCS3A01G010800 chr3B 88.958 643 50 9 1913 2537 5772604 5771965 0.000000e+00 774
15 TraesCS3A01G010800 chr3B 81.967 427 41 15 1 404 242669118 242668705 1.880000e-86 329
16 TraesCS3A01G010800 chr3B 85.404 322 36 6 706 1021 5876338 5876022 8.750000e-85 324
17 TraesCS3A01G010800 chr3B 79.737 380 47 19 900 1267 5756716 5756355 5.420000e-62 248
18 TraesCS3A01G010800 chr3B 77.338 278 33 17 688 946 5848707 5848441 1.220000e-28 137
19 TraesCS3A01G010800 chr3B 79.793 193 31 6 2228 2417 23792189 23792002 1.580000e-27 134
20 TraesCS3A01G010800 chr3D 87.531 810 75 14 1614 2418 622825 622037 0.000000e+00 913
21 TraesCS3A01G010800 chr3D 87.867 511 46 9 1913 2418 686417 685918 1.010000e-163 586
22 TraesCS3A01G010800 chr3D 87.500 512 52 7 1913 2418 586537 586032 4.700000e-162 580
23 TraesCS3A01G010800 chr3D 83.168 505 46 14 952 1427 687369 686875 2.330000e-115 425
24 TraesCS3A01G010800 chr3D 82.707 399 42 11 1 373 167381487 167381090 1.880000e-86 329
25 TraesCS3A01G010800 chr3D 85.209 311 35 5 783 1087 587613 587308 2.450000e-80 309
26 TraesCS3A01G010800 chrUn 87.518 689 65 12 1862 2537 243149361 243148681 0.000000e+00 776
27 TraesCS3A01G010800 chrUn 87.518 689 65 12 1862 2537 243162234 243161554 0.000000e+00 776
28 TraesCS3A01G010800 chrUn 87.518 689 65 11 1862 2537 270191287 270191967 0.000000e+00 776
29 TraesCS3A01G010800 chrUn 83.504 685 83 15 706 1378 34334130 34333464 1.670000e-171 612
30 TraesCS3A01G010800 chrUn 80.444 721 98 27 706 1419 36038698 36038014 6.260000e-141 510
31 TraesCS3A01G010800 chrUn 80.444 721 98 27 706 1419 372246705 372247389 6.260000e-141 510
32 TraesCS3A01G010800 chrUn 79.737 380 47 19 900 1267 355362121 355361760 5.420000e-62 248
33 TraesCS3A01G010800 chr7A 95.577 407 14 3 1 404 598328698 598328293 0.000000e+00 649
34 TraesCS3A01G010800 chr7A 85.915 142 13 2 1 142 9480183 9480049 7.310000e-31 145
35 TraesCS3A01G010800 chr7D 94.297 263 15 0 402 664 459743135 459742873 1.090000e-108 403
36 TraesCS3A01G010800 chr7D 83.679 386 28 14 34 390 252032701 252032322 5.230000e-87 331
37 TraesCS3A01G010800 chr5D 93.893 262 14 2 403 664 307096135 307096394 6.580000e-106 394
38 TraesCS3A01G010800 chr4A 93.284 268 17 1 401 668 410364835 410365101 6.580000e-106 394
39 TraesCS3A01G010800 chr5A 93.130 262 17 1 403 664 692261431 692261691 1.420000e-102 383
40 TraesCS3A01G010800 chr5B 92.776 263 18 1 402 664 27825039 27825300 1.840000e-101 379
41 TraesCS3A01G010800 chr2D 89.404 302 29 2 377 678 79687730 79688028 6.630000e-101 377
42 TraesCS3A01G010800 chr1D 92.135 267 19 2 398 664 222025251 222025515 2.380000e-100 375
43 TraesCS3A01G010800 chr2B 90.714 280 23 2 397 674 384650623 384650901 1.110000e-98 370
44 TraesCS3A01G010800 chr2B 85.281 231 26 6 181 404 98580679 98580450 5.460000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G010800 chr3A 9049924 9052460 2536 False 4686.0 4686 100.0000 1 2537 1 chr3A.!!$F4 2536
1 TraesCS3A01G010800 chr3A 9007079 9008228 1149 False 1325.0 1325 87.8550 681 1810 1 chr3A.!!$F3 1129
2 TraesCS3A01G010800 chr3A 8991114 8991691 577 False 586.0 586 85.2600 843 1427 1 chr3A.!!$F2 584
3 TraesCS3A01G010800 chr3A 8961599 8962627 1028 False 462.5 564 85.2525 843 1810 2 chr3A.!!$F8 967
4 TraesCS3A01G010800 chr3A 8944855 8945983 1128 False 435.5 510 83.5170 742 1810 2 chr3A.!!$F7 1068
5 TraesCS3A01G010800 chr3B 5848441 5851622 3181 True 857.5 1578 81.9170 688 2174 2 chr3B.!!$R7 1486
6 TraesCS3A01G010800 chr3B 5771965 5773749 1784 True 808.5 843 84.9120 706 2537 2 chr3B.!!$R6 1831
7 TraesCS3A01G010800 chr3B 6047824 6048653 829 False 793.0 793 84.1740 764 1601 1 chr3B.!!$F1 837
8 TraesCS3A01G010800 chr3B 5866419 5867099 680 True 776.0 776 87.5180 1862 2537 1 chr3B.!!$R2 675
9 TraesCS3A01G010800 chr3D 622037 622825 788 True 913.0 913 87.5310 1614 2418 1 chr3D.!!$R1 804
10 TraesCS3A01G010800 chr3D 685918 687369 1451 True 505.5 586 85.5175 952 2418 2 chr3D.!!$R4 1466
11 TraesCS3A01G010800 chr3D 586032 587613 1581 True 444.5 580 86.3545 783 2418 2 chr3D.!!$R3 1635
12 TraesCS3A01G010800 chrUn 243148681 243149361 680 True 776.0 776 87.5180 1862 2537 1 chrUn.!!$R3 675
13 TraesCS3A01G010800 chrUn 243161554 243162234 680 True 776.0 776 87.5180 1862 2537 1 chrUn.!!$R4 675
14 TraesCS3A01G010800 chrUn 270191287 270191967 680 False 776.0 776 87.5180 1862 2537 1 chrUn.!!$F1 675
15 TraesCS3A01G010800 chrUn 34333464 34334130 666 True 612.0 612 83.5040 706 1378 1 chrUn.!!$R1 672
16 TraesCS3A01G010800 chrUn 36038014 36038698 684 True 510.0 510 80.4440 706 1419 1 chrUn.!!$R2 713
17 TraesCS3A01G010800 chrUn 372246705 372247389 684 False 510.0 510 80.4440 706 1419 1 chrUn.!!$F2 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 338 0.104855 GAGCATGCGTGGACCTGATA 59.895 55.0 13.01 0.0 0.00 2.15 F
1281 1352 0.162082 GTATGCAAACGCAACGACGA 59.838 50.0 0.00 0.0 44.09 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1479 1667 0.108756 GAGGTGTCCGTCCTACTTGC 60.109 60.0 0.0 0.0 35.2 4.01 R
2421 2672 0.759060 GGTACCCATTTGCCATCCCC 60.759 60.0 0.0 0.0 0.0 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.320610 CTCTCTCCTCCTACCATTCCA 57.679 52.381 0.00 0.00 0.00 3.53
21 22 3.855668 CTCTCTCCTCCTACCATTCCAT 58.144 50.000 0.00 0.00 0.00 3.41
22 23 3.577848 CTCTCTCCTCCTACCATTCCATG 59.422 52.174 0.00 0.00 0.00 3.66
23 24 2.038295 CTCTCCTCCTACCATTCCATGC 59.962 54.545 0.00 0.00 0.00 4.06
24 25 2.053244 CTCCTCCTACCATTCCATGCT 58.947 52.381 0.00 0.00 0.00 3.79
25 26 2.441001 CTCCTCCTACCATTCCATGCTT 59.559 50.000 0.00 0.00 0.00 3.91
26 27 2.852449 TCCTCCTACCATTCCATGCTTT 59.148 45.455 0.00 0.00 0.00 3.51
27 28 3.269381 TCCTCCTACCATTCCATGCTTTT 59.731 43.478 0.00 0.00 0.00 2.27
28 29 4.026052 CCTCCTACCATTCCATGCTTTTT 58.974 43.478 0.00 0.00 0.00 1.94
29 30 4.098501 CCTCCTACCATTCCATGCTTTTTC 59.901 45.833 0.00 0.00 0.00 2.29
30 31 4.023291 TCCTACCATTCCATGCTTTTTCC 58.977 43.478 0.00 0.00 0.00 3.13
31 32 4.026052 CCTACCATTCCATGCTTTTTCCT 58.974 43.478 0.00 0.00 0.00 3.36
32 33 5.044476 TCCTACCATTCCATGCTTTTTCCTA 60.044 40.000 0.00 0.00 0.00 2.94
33 34 5.835280 CCTACCATTCCATGCTTTTTCCTAT 59.165 40.000 0.00 0.00 0.00 2.57
34 35 5.603170 ACCATTCCATGCTTTTTCCTATG 57.397 39.130 0.00 0.00 0.00 2.23
35 36 5.271598 ACCATTCCATGCTTTTTCCTATGA 58.728 37.500 0.00 0.00 0.00 2.15
36 37 5.901276 ACCATTCCATGCTTTTTCCTATGAT 59.099 36.000 0.00 0.00 0.00 2.45
37 38 6.384886 ACCATTCCATGCTTTTTCCTATGATT 59.615 34.615 0.00 0.00 0.00 2.57
38 39 7.092757 ACCATTCCATGCTTTTTCCTATGATTT 60.093 33.333 0.00 0.00 0.00 2.17
39 40 7.771826 CCATTCCATGCTTTTTCCTATGATTTT 59.228 33.333 0.00 0.00 0.00 1.82
40 41 9.820725 CATTCCATGCTTTTTCCTATGATTTTA 57.179 29.630 0.00 0.00 0.00 1.52
43 44 9.820725 TCCATGCTTTTTCCTATGATTTTAATG 57.179 29.630 0.00 0.00 0.00 1.90
44 45 9.603921 CCATGCTTTTTCCTATGATTTTAATGT 57.396 29.630 0.00 0.00 0.00 2.71
95 96 8.817296 CGAAAATTTGATTTACAATTCGTTTGC 58.183 29.630 0.00 0.00 40.49 3.68
96 97 9.643652 GAAAATTTGATTTACAATTCGTTTGCA 57.356 25.926 0.00 0.00 39.03 4.08
103 104 9.416794 TGATTTACAATTCGTTTGCATATTTGT 57.583 25.926 0.00 0.00 39.03 2.83
104 105 9.674208 GATTTACAATTCGTTTGCATATTTGTG 57.326 29.630 0.00 0.00 39.03 3.33
105 106 8.581057 TTTACAATTCGTTTGCATATTTGTGT 57.419 26.923 0.00 0.00 39.03 3.72
106 107 8.581057 TTACAATTCGTTTGCATATTTGTGTT 57.419 26.923 0.00 0.00 39.03 3.32
107 108 7.104326 ACAATTCGTTTGCATATTTGTGTTC 57.896 32.000 0.00 0.00 39.03 3.18
108 109 6.145371 ACAATTCGTTTGCATATTTGTGTTCC 59.855 34.615 0.00 0.00 39.03 3.62
109 110 5.446143 TTCGTTTGCATATTTGTGTTCCT 57.554 34.783 0.00 0.00 0.00 3.36
110 111 5.446143 TCGTTTGCATATTTGTGTTCCTT 57.554 34.783 0.00 0.00 0.00 3.36
111 112 6.561737 TCGTTTGCATATTTGTGTTCCTTA 57.438 33.333 0.00 0.00 0.00 2.69
112 113 6.971602 TCGTTTGCATATTTGTGTTCCTTAA 58.028 32.000 0.00 0.00 0.00 1.85
113 114 7.081349 TCGTTTGCATATTTGTGTTCCTTAAG 58.919 34.615 0.00 0.00 0.00 1.85
114 115 7.041030 TCGTTTGCATATTTGTGTTCCTTAAGA 60.041 33.333 3.36 0.00 0.00 2.10
115 116 7.754924 CGTTTGCATATTTGTGTTCCTTAAGAT 59.245 33.333 3.36 0.00 0.00 2.40
116 117 9.423061 GTTTGCATATTTGTGTTCCTTAAGATT 57.577 29.630 3.36 0.00 0.00 2.40
119 120 8.902806 TGCATATTTGTGTTCCTTAAGATTAGG 58.097 33.333 3.36 0.00 0.00 2.69
120 121 9.120538 GCATATTTGTGTTCCTTAAGATTAGGA 57.879 33.333 3.36 0.00 40.01 2.94
124 125 8.990163 TTTGTGTTCCTTAAGATTAGGACTTT 57.010 30.769 3.36 0.00 41.41 2.66
141 142 9.901172 TTAGGACTTTAAAAGAAGAACACTCTT 57.099 29.630 0.00 0.00 44.93 2.85
142 143 8.214721 AGGACTTTAAAAGAAGAACACTCTTG 57.785 34.615 0.00 0.00 42.19 3.02
143 144 8.047310 AGGACTTTAAAAGAAGAACACTCTTGA 58.953 33.333 0.00 0.00 42.19 3.02
144 145 8.338986 GGACTTTAAAAGAAGAACACTCTTGAG 58.661 37.037 0.00 0.00 42.19 3.02
145 146 8.794335 ACTTTAAAAGAAGAACACTCTTGAGT 57.206 30.769 0.00 0.00 42.19 3.41
146 147 9.886132 ACTTTAAAAGAAGAACACTCTTGAGTA 57.114 29.630 2.72 0.00 42.19 2.59
188 189 5.621197 TGGTCTTGTTTTGAATATCACCG 57.379 39.130 0.00 0.00 0.00 4.94
189 190 5.067273 TGGTCTTGTTTTGAATATCACCGT 58.933 37.500 0.00 0.00 0.00 4.83
190 191 5.049060 TGGTCTTGTTTTGAATATCACCGTG 60.049 40.000 0.00 0.00 0.00 4.94
191 192 5.390613 GTCTTGTTTTGAATATCACCGTGG 58.609 41.667 0.00 0.00 0.00 4.94
192 193 5.180492 GTCTTGTTTTGAATATCACCGTGGA 59.820 40.000 0.00 0.00 0.00 4.02
193 194 5.765677 TCTTGTTTTGAATATCACCGTGGAA 59.234 36.000 0.00 0.00 0.00 3.53
194 195 6.432783 TCTTGTTTTGAATATCACCGTGGAAT 59.567 34.615 0.00 0.00 0.00 3.01
195 196 7.608376 TCTTGTTTTGAATATCACCGTGGAATA 59.392 33.333 0.00 0.00 0.00 1.75
196 197 7.689446 TGTTTTGAATATCACCGTGGAATAA 57.311 32.000 0.00 0.00 0.00 1.40
197 198 8.112016 TGTTTTGAATATCACCGTGGAATAAA 57.888 30.769 0.00 0.00 0.00 1.40
198 199 8.024285 TGTTTTGAATATCACCGTGGAATAAAC 58.976 33.333 0.00 0.00 0.00 2.01
199 200 7.689446 TTTGAATATCACCGTGGAATAAACA 57.311 32.000 0.00 0.00 0.00 2.83
200 201 6.671614 TGAATATCACCGTGGAATAAACAC 57.328 37.500 0.00 0.00 35.55 3.32
201 202 6.174049 TGAATATCACCGTGGAATAAACACA 58.826 36.000 0.00 0.00 38.74 3.72
202 203 6.826231 TGAATATCACCGTGGAATAAACACAT 59.174 34.615 0.00 0.00 38.74 3.21
203 204 7.338196 TGAATATCACCGTGGAATAAACACATT 59.662 33.333 0.00 0.00 38.74 2.71
204 205 5.975693 ATCACCGTGGAATAAACACATTT 57.024 34.783 0.00 0.00 38.74 2.32
205 206 5.114785 TCACCGTGGAATAAACACATTTG 57.885 39.130 0.00 0.00 38.74 2.32
206 207 4.580995 TCACCGTGGAATAAACACATTTGT 59.419 37.500 0.00 0.00 38.74 2.83
207 208 4.915085 CACCGTGGAATAAACACATTTGTC 59.085 41.667 0.00 0.00 38.74 3.18
208 209 4.022676 ACCGTGGAATAAACACATTTGTCC 60.023 41.667 0.00 0.00 38.74 4.02
209 210 4.022762 CCGTGGAATAAACACATTTGTCCA 60.023 41.667 0.00 0.00 39.34 4.02
210 211 5.508153 CCGTGGAATAAACACATTTGTCCAA 60.508 40.000 7.98 0.00 41.42 3.53
211 212 5.980116 CGTGGAATAAACACATTTGTCCAAA 59.020 36.000 7.98 0.00 41.42 3.28
212 213 6.644592 CGTGGAATAAACACATTTGTCCAAAT 59.355 34.615 0.00 0.00 41.42 2.32
213 214 7.810282 CGTGGAATAAACACATTTGTCCAAATA 59.190 33.333 5.02 0.00 41.42 1.40
214 215 9.139174 GTGGAATAAACACATTTGTCCAAATAG 57.861 33.333 5.02 4.42 41.42 1.73
215 216 9.083422 TGGAATAAACACATTTGTCCAAATAGA 57.917 29.630 5.02 0.00 38.99 1.98
216 217 9.921637 GGAATAAACACATTTGTCCAAATAGAA 57.078 29.630 5.02 0.00 38.84 2.10
251 252 6.681777 ACTTTTGTTTCACAAGATATCAGGC 58.318 36.000 5.32 0.00 39.53 4.85
252 253 6.265196 ACTTTTGTTTCACAAGATATCAGGCA 59.735 34.615 5.32 0.00 39.53 4.75
253 254 6.839124 TTTGTTTCACAAGATATCAGGCAT 57.161 33.333 5.32 0.00 39.53 4.40
254 255 6.441093 TTGTTTCACAAGATATCAGGCATC 57.559 37.500 5.32 0.00 32.34 3.91
255 256 5.748402 TGTTTCACAAGATATCAGGCATCT 58.252 37.500 5.32 0.00 34.15 2.90
256 257 6.888105 TGTTTCACAAGATATCAGGCATCTA 58.112 36.000 5.32 0.00 32.40 1.98
257 258 7.337938 TGTTTCACAAGATATCAGGCATCTAA 58.662 34.615 5.32 0.00 32.40 2.10
258 259 7.828717 TGTTTCACAAGATATCAGGCATCTAAA 59.171 33.333 5.32 0.00 32.40 1.85
259 260 8.844244 GTTTCACAAGATATCAGGCATCTAAAT 58.156 33.333 5.32 0.00 32.40 1.40
260 261 8.985315 TTCACAAGATATCAGGCATCTAAATT 57.015 30.769 5.32 0.00 32.40 1.82
261 262 8.985315 TCACAAGATATCAGGCATCTAAATTT 57.015 30.769 5.32 0.00 32.40 1.82
264 265 9.851686 ACAAGATATCAGGCATCTAAATTTACA 57.148 29.630 5.32 0.00 32.40 2.41
314 315 6.945636 TCTAGGATAGAGTTAGAGAGGGAG 57.054 45.833 0.00 0.00 44.15 4.30
315 316 5.788533 TCTAGGATAGAGTTAGAGAGGGAGG 59.211 48.000 0.00 0.00 44.15 4.30
316 317 4.321282 AGGATAGAGTTAGAGAGGGAGGT 58.679 47.826 0.00 0.00 0.00 3.85
317 318 4.105697 AGGATAGAGTTAGAGAGGGAGGTG 59.894 50.000 0.00 0.00 0.00 4.00
318 319 2.838637 AGAGTTAGAGAGGGAGGTGG 57.161 55.000 0.00 0.00 0.00 4.61
319 320 2.289467 AGAGTTAGAGAGGGAGGTGGA 58.711 52.381 0.00 0.00 0.00 4.02
320 321 2.243736 AGAGTTAGAGAGGGAGGTGGAG 59.756 54.545 0.00 0.00 0.00 3.86
321 322 1.116308 GTTAGAGAGGGAGGTGGAGC 58.884 60.000 0.00 0.00 0.00 4.70
322 323 0.710588 TTAGAGAGGGAGGTGGAGCA 59.289 55.000 0.00 0.00 0.00 4.26
323 324 0.937441 TAGAGAGGGAGGTGGAGCAT 59.063 55.000 0.00 0.00 0.00 3.79
324 325 0.690411 AGAGAGGGAGGTGGAGCATG 60.690 60.000 0.00 0.00 0.00 4.06
325 326 2.191641 GAGGGAGGTGGAGCATGC 59.808 66.667 10.51 10.51 0.00 4.06
326 327 3.746949 GAGGGAGGTGGAGCATGCG 62.747 68.421 13.01 0.00 0.00 4.73
327 328 4.101448 GGGAGGTGGAGCATGCGT 62.101 66.667 13.01 0.00 0.00 5.24
328 329 2.821366 GGAGGTGGAGCATGCGTG 60.821 66.667 13.01 0.09 0.00 5.34
329 330 2.821366 GAGGTGGAGCATGCGTGG 60.821 66.667 13.01 0.00 0.00 4.94
330 331 3.315142 GAGGTGGAGCATGCGTGGA 62.315 63.158 13.01 0.00 0.00 4.02
331 332 3.127533 GGTGGAGCATGCGTGGAC 61.128 66.667 13.01 7.78 0.00 4.02
332 333 3.127533 GTGGAGCATGCGTGGACC 61.128 66.667 13.01 12.17 0.00 4.46
333 334 3.321648 TGGAGCATGCGTGGACCT 61.322 61.111 13.01 0.00 0.00 3.85
334 335 2.821366 GGAGCATGCGTGGACCTG 60.821 66.667 13.01 0.00 0.00 4.00
335 336 2.265739 GAGCATGCGTGGACCTGA 59.734 61.111 13.01 0.00 0.00 3.86
336 337 1.153289 GAGCATGCGTGGACCTGAT 60.153 57.895 13.01 0.00 0.00 2.90
337 338 0.104855 GAGCATGCGTGGACCTGATA 59.895 55.000 13.01 0.00 0.00 2.15
338 339 0.179073 AGCATGCGTGGACCTGATAC 60.179 55.000 13.01 0.00 0.00 2.24
339 340 0.179073 GCATGCGTGGACCTGATACT 60.179 55.000 8.27 0.00 0.00 2.12
340 341 1.068588 GCATGCGTGGACCTGATACTA 59.931 52.381 8.27 0.00 0.00 1.82
341 342 2.483013 GCATGCGTGGACCTGATACTAA 60.483 50.000 8.27 0.00 0.00 2.24
342 343 3.803715 GCATGCGTGGACCTGATACTAAT 60.804 47.826 8.27 0.00 0.00 1.73
343 344 3.452755 TGCGTGGACCTGATACTAATG 57.547 47.619 0.00 0.00 0.00 1.90
344 345 2.102420 TGCGTGGACCTGATACTAATGG 59.898 50.000 0.00 0.00 0.00 3.16
345 346 2.102588 GCGTGGACCTGATACTAATGGT 59.897 50.000 0.00 0.00 35.23 3.55
346 347 3.431766 GCGTGGACCTGATACTAATGGTT 60.432 47.826 0.00 0.00 32.30 3.67
347 348 4.766375 CGTGGACCTGATACTAATGGTTT 58.234 43.478 0.00 0.00 32.30 3.27
348 349 5.183228 CGTGGACCTGATACTAATGGTTTT 58.817 41.667 0.00 0.00 32.30 2.43
349 350 5.064707 CGTGGACCTGATACTAATGGTTTTG 59.935 44.000 0.00 0.00 32.30 2.44
350 351 6.177610 GTGGACCTGATACTAATGGTTTTGA 58.822 40.000 0.00 0.00 32.30 2.69
351 352 6.093633 GTGGACCTGATACTAATGGTTTTGAC 59.906 42.308 0.00 0.00 32.30 3.18
352 353 6.177610 GGACCTGATACTAATGGTTTTGACA 58.822 40.000 0.00 0.00 32.30 3.58
353 354 6.093633 GGACCTGATACTAATGGTTTTGACAC 59.906 42.308 0.00 0.00 32.30 3.67
354 355 6.539173 ACCTGATACTAATGGTTTTGACACA 58.461 36.000 0.00 0.00 0.00 3.72
355 356 6.430000 ACCTGATACTAATGGTTTTGACACAC 59.570 38.462 0.00 0.00 0.00 3.82
356 357 6.429692 CCTGATACTAATGGTTTTGACACACA 59.570 38.462 0.00 0.00 0.00 3.72
357 358 7.040755 CCTGATACTAATGGTTTTGACACACAA 60.041 37.037 0.00 0.00 36.65 3.33
358 359 7.644490 TGATACTAATGGTTTTGACACACAAC 58.356 34.615 0.00 0.00 38.29 3.32
359 360 5.257082 ACTAATGGTTTTGACACACAACC 57.743 39.130 11.39 11.39 42.52 3.77
360 361 4.953579 ACTAATGGTTTTGACACACAACCT 59.046 37.500 16.90 4.78 42.62 3.50
361 362 3.799281 ATGGTTTTGACACACAACCTG 57.201 42.857 16.90 0.00 42.62 4.00
362 363 2.796557 TGGTTTTGACACACAACCTGA 58.203 42.857 16.90 0.40 42.62 3.86
363 364 2.490115 TGGTTTTGACACACAACCTGAC 59.510 45.455 16.90 0.00 42.62 3.51
364 365 2.159296 GGTTTTGACACACAACCTGACC 60.159 50.000 11.13 0.00 40.03 4.02
365 366 2.490115 GTTTTGACACACAACCTGACCA 59.510 45.455 0.00 0.00 38.29 4.02
366 367 1.745232 TTGACACACAACCTGACCAC 58.255 50.000 0.00 0.00 33.18 4.16
367 368 0.461163 TGACACACAACCTGACCACG 60.461 55.000 0.00 0.00 0.00 4.94
368 369 1.153249 ACACACAACCTGACCACGG 60.153 57.895 0.00 0.00 0.00 4.94
369 370 2.203153 ACACAACCTGACCACGGC 60.203 61.111 0.00 0.00 0.00 5.68
370 371 3.345808 CACAACCTGACCACGGCG 61.346 66.667 4.80 4.80 0.00 6.46
376 377 4.680237 CTGACCACGGCGCCAGAA 62.680 66.667 28.98 4.05 0.00 3.02
377 378 4.980805 TGACCACGGCGCCAGAAC 62.981 66.667 28.98 13.58 0.00 3.01
378 379 4.980805 GACCACGGCGCCAGAACA 62.981 66.667 28.98 0.00 0.00 3.18
379 380 4.988598 ACCACGGCGCCAGAACAG 62.989 66.667 28.98 11.60 0.00 3.16
390 391 2.965671 CCAGAACAGGCATGGGATAT 57.034 50.000 2.31 0.00 0.00 1.63
391 392 2.787994 CCAGAACAGGCATGGGATATC 58.212 52.381 2.31 0.00 0.00 1.63
392 393 2.553904 CCAGAACAGGCATGGGATATCC 60.554 54.545 13.87 13.87 0.00 2.59
404 405 2.094762 GGATATCCCGTGCATGGTAC 57.905 55.000 23.39 1.70 0.00 3.34
405 406 1.623811 GGATATCCCGTGCATGGTACT 59.376 52.381 23.39 9.91 0.00 2.73
406 407 2.353803 GGATATCCCGTGCATGGTACTC 60.354 54.545 23.39 13.41 0.00 2.59
407 408 1.045407 TATCCCGTGCATGGTACTCC 58.955 55.000 23.39 0.00 0.00 3.85
408 409 1.696097 ATCCCGTGCATGGTACTCCC 61.696 60.000 23.39 0.00 0.00 4.30
409 410 2.367202 CCCGTGCATGGTACTCCCT 61.367 63.158 23.39 0.00 0.00 4.20
410 411 1.144057 CCGTGCATGGTACTCCCTC 59.856 63.158 17.42 0.00 0.00 4.30
411 412 1.144057 CGTGCATGGTACTCCCTCC 59.856 63.158 0.00 0.00 0.00 4.30
412 413 1.144057 GTGCATGGTACTCCCTCCG 59.856 63.158 0.00 0.00 0.00 4.63
413 414 2.063979 TGCATGGTACTCCCTCCGG 61.064 63.158 0.00 0.00 0.00 5.14
414 415 2.064581 GCATGGTACTCCCTCCGGT 61.065 63.158 0.00 0.00 0.00 5.28
415 416 2.029307 GCATGGTACTCCCTCCGGTC 62.029 65.000 0.00 0.00 0.00 4.79
416 417 1.075450 ATGGTACTCCCTCCGGTCC 60.075 63.158 0.00 0.00 0.00 4.46
417 418 1.591280 ATGGTACTCCCTCCGGTCCT 61.591 60.000 0.00 0.00 0.00 3.85
418 419 1.001376 GGTACTCCCTCCGGTCCTT 59.999 63.158 0.00 0.00 0.00 3.36
419 420 0.616964 GGTACTCCCTCCGGTCCTTT 60.617 60.000 0.00 0.00 0.00 3.11
420 421 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
421 422 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
422 423 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
423 424 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
424 425 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
425 426 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
426 427 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
427 428 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
428 429 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
429 430 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
430 431 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
431 432 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
432 433 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
433 434 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
434 435 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
435 436 6.292703 CCGGTCCTTTTTAGTTCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
436 437 6.477688 CGGTCCTTTTTAGTTCGCATATAAGA 59.522 38.462 0.00 0.00 0.00 2.10
437 438 7.170998 CGGTCCTTTTTAGTTCGCATATAAGAT 59.829 37.037 0.00 0.00 0.00 2.40
438 439 8.837389 GGTCCTTTTTAGTTCGCATATAAGATT 58.163 33.333 0.00 0.00 0.00 2.40
445 446 9.594478 TTTAGTTCGCATATAAGATTTGTCTGA 57.406 29.630 0.00 0.00 0.00 3.27
446 447 9.594478 TTAGTTCGCATATAAGATTTGTCTGAA 57.406 29.630 0.00 0.00 0.00 3.02
447 448 8.668510 AGTTCGCATATAAGATTTGTCTGAAT 57.331 30.769 0.00 0.00 0.00 2.57
448 449 9.113838 AGTTCGCATATAAGATTTGTCTGAATT 57.886 29.630 0.00 0.00 0.00 2.17
449 450 9.374960 GTTCGCATATAAGATTTGTCTGAATTC 57.625 33.333 0.00 0.00 0.00 2.17
450 451 8.661352 TCGCATATAAGATTTGTCTGAATTCA 57.339 30.769 8.12 8.12 0.00 2.57
451 452 8.551205 TCGCATATAAGATTTGTCTGAATTCAC 58.449 33.333 3.38 0.00 0.00 3.18
452 453 7.528516 CGCATATAAGATTTGTCTGAATTCACG 59.471 37.037 3.38 1.39 0.00 4.35
453 454 7.322222 GCATATAAGATTTGTCTGAATTCACGC 59.678 37.037 3.38 0.82 0.00 5.34
454 455 4.425577 AAGATTTGTCTGAATTCACGCC 57.574 40.909 3.38 0.00 0.00 5.68
455 456 3.679389 AGATTTGTCTGAATTCACGCCT 58.321 40.909 3.38 0.00 0.00 5.52
456 457 3.686726 AGATTTGTCTGAATTCACGCCTC 59.313 43.478 3.38 0.00 0.00 4.70
457 458 1.428448 TTGTCTGAATTCACGCCTCG 58.572 50.000 3.38 0.00 0.00 4.63
458 459 0.317160 TGTCTGAATTCACGCCTCGT 59.683 50.000 3.38 0.00 42.36 4.18
459 460 1.542472 TGTCTGAATTCACGCCTCGTA 59.458 47.619 3.38 0.00 38.32 3.43
460 461 2.029739 TGTCTGAATTCACGCCTCGTAA 60.030 45.455 3.38 0.00 38.32 3.18
461 462 2.991190 GTCTGAATTCACGCCTCGTAAA 59.009 45.455 3.38 0.00 38.32 2.01
462 463 3.060895 GTCTGAATTCACGCCTCGTAAAG 59.939 47.826 3.38 0.00 38.32 1.85
463 464 2.993899 CTGAATTCACGCCTCGTAAAGT 59.006 45.455 3.38 0.00 38.32 2.66
464 465 3.395639 TGAATTCACGCCTCGTAAAGTT 58.604 40.909 3.38 0.00 38.32 2.66
465 466 3.810941 TGAATTCACGCCTCGTAAAGTTT 59.189 39.130 3.38 0.00 38.32 2.66
466 467 3.806316 ATTCACGCCTCGTAAAGTTTG 57.194 42.857 0.00 0.00 38.32 2.93
467 468 2.512485 TCACGCCTCGTAAAGTTTGA 57.488 45.000 0.00 0.00 38.32 2.69
468 469 2.129607 TCACGCCTCGTAAAGTTTGAC 58.870 47.619 0.00 0.00 38.32 3.18
469 470 1.193874 CACGCCTCGTAAAGTTTGACC 59.806 52.381 0.00 0.00 38.32 4.02
470 471 1.202557 ACGCCTCGTAAAGTTTGACCA 60.203 47.619 0.00 0.00 38.73 4.02
471 472 1.868498 CGCCTCGTAAAGTTTGACCAA 59.132 47.619 0.00 0.00 0.00 3.67
472 473 2.349155 CGCCTCGTAAAGTTTGACCAAC 60.349 50.000 0.00 0.00 35.32 3.77
527 528 9.836076 AATGTGAAATCAATATCATTAGATGCG 57.164 29.630 0.00 0.00 35.67 4.73
528 529 8.382030 TGTGAAATCAATATCATTAGATGCGT 57.618 30.769 0.00 0.00 35.67 5.24
529 530 8.498358 TGTGAAATCAATATCATTAGATGCGTC 58.502 33.333 0.00 0.00 35.67 5.19
530 531 8.498358 GTGAAATCAATATCATTAGATGCGTCA 58.502 33.333 8.99 0.00 35.67 4.35
531 532 9.223099 TGAAATCAATATCATTAGATGCGTCAT 57.777 29.630 8.99 0.00 35.67 3.06
532 533 9.486857 GAAATCAATATCATTAGATGCGTCATG 57.513 33.333 8.99 4.33 35.67 3.07
533 534 8.782339 AATCAATATCATTAGATGCGTCATGA 57.218 30.769 8.99 9.84 35.67 3.07
534 535 7.586714 TCAATATCATTAGATGCGTCATGAC 57.413 36.000 16.21 16.21 35.67 3.06
535 536 7.381323 TCAATATCATTAGATGCGTCATGACT 58.619 34.615 22.95 4.97 35.67 3.41
536 537 7.874528 TCAATATCATTAGATGCGTCATGACTT 59.125 33.333 22.95 8.27 35.67 3.01
537 538 9.143631 CAATATCATTAGATGCGTCATGACTTA 57.856 33.333 22.95 12.20 35.67 2.24
538 539 9.710900 AATATCATTAGATGCGTCATGACTTAA 57.289 29.630 22.95 13.10 35.67 1.85
539 540 9.710900 ATATCATTAGATGCGTCATGACTTAAA 57.289 29.630 22.95 9.25 35.67 1.52
540 541 8.613060 ATCATTAGATGCGTCATGACTTAAAT 57.387 30.769 22.95 10.95 31.91 1.40
541 542 8.437360 TCATTAGATGCGTCATGACTTAAATT 57.563 30.769 22.95 7.42 0.00 1.82
542 543 8.892723 TCATTAGATGCGTCATGACTTAAATTT 58.107 29.630 22.95 9.07 0.00 1.82
543 544 9.507280 CATTAGATGCGTCATGACTTAAATTTT 57.493 29.630 22.95 4.61 0.00 1.82
544 545 9.722056 ATTAGATGCGTCATGACTTAAATTTTC 57.278 29.630 22.95 8.71 0.00 2.29
545 546 7.144722 AGATGCGTCATGACTTAAATTTTCA 57.855 32.000 22.95 7.45 0.00 2.69
546 547 7.765307 AGATGCGTCATGACTTAAATTTTCAT 58.235 30.769 22.95 11.16 0.00 2.57
547 548 8.892723 AGATGCGTCATGACTTAAATTTTCATA 58.107 29.630 22.95 0.00 0.00 2.15
548 549 9.669353 GATGCGTCATGACTTAAATTTTCATAT 57.331 29.630 22.95 0.88 0.00 1.78
550 551 9.288124 TGCGTCATGACTTAAATTTTCATATTG 57.712 29.630 22.95 3.02 0.00 1.90
551 552 9.289303 GCGTCATGACTTAAATTTTCATATTGT 57.711 29.630 22.95 0.00 0.00 2.71
573 574 9.969001 ATTGTATAACTTTAACATGGTAGGTGT 57.031 29.630 0.00 0.00 0.00 4.16
574 575 9.439500 TTGTATAACTTTAACATGGTAGGTGTC 57.561 33.333 0.00 0.00 0.00 3.67
575 576 7.760794 TGTATAACTTTAACATGGTAGGTGTCG 59.239 37.037 0.00 0.00 0.00 4.35
576 577 4.877378 ACTTTAACATGGTAGGTGTCGA 57.123 40.909 0.00 0.00 0.00 4.20
577 578 5.416271 ACTTTAACATGGTAGGTGTCGAT 57.584 39.130 0.00 0.00 0.00 3.59
578 579 6.534475 ACTTTAACATGGTAGGTGTCGATA 57.466 37.500 0.00 0.00 0.00 2.92
579 580 7.120923 ACTTTAACATGGTAGGTGTCGATAT 57.879 36.000 0.00 0.00 0.00 1.63
580 581 7.562135 ACTTTAACATGGTAGGTGTCGATATT 58.438 34.615 0.00 0.00 0.00 1.28
581 582 8.044908 ACTTTAACATGGTAGGTGTCGATATTT 58.955 33.333 0.00 0.00 0.00 1.40
582 583 8.795842 TTTAACATGGTAGGTGTCGATATTTT 57.204 30.769 0.00 0.00 0.00 1.82
583 584 8.795842 TTAACATGGTAGGTGTCGATATTTTT 57.204 30.769 0.00 0.00 0.00 1.94
673 674 3.219052 CGGAGGAAGTAGATAATCCGC 57.781 52.381 0.00 0.00 42.64 5.54
674 675 2.820787 CGGAGGAAGTAGATAATCCGCT 59.179 50.000 0.00 0.00 42.64 5.52
675 676 3.119779 CGGAGGAAGTAGATAATCCGCTC 60.120 52.174 0.00 0.00 42.64 5.03
676 677 4.083565 GGAGGAAGTAGATAATCCGCTCT 58.916 47.826 0.00 0.00 38.31 4.09
677 678 4.157105 GGAGGAAGTAGATAATCCGCTCTC 59.843 50.000 0.00 0.00 38.31 3.20
678 679 3.754323 AGGAAGTAGATAATCCGCTCTCG 59.246 47.826 0.00 0.00 38.31 4.04
679 680 3.752222 GGAAGTAGATAATCCGCTCTCGA 59.248 47.826 0.00 0.00 38.10 4.04
969 990 0.597568 CTTCAGTGGCGGCATTGAAA 59.402 50.000 36.82 25.32 31.93 2.69
1055 1080 3.131577 TCGTTGATGCCCGAGTACTTAAT 59.868 43.478 0.00 0.00 0.00 1.40
1067 1097 6.430616 CCCGAGTACTTAATTAGGAGGAGTAG 59.569 46.154 0.00 0.00 0.00 2.57
1091 1121 0.954452 GCCACAACCACAAAGAGAGG 59.046 55.000 0.00 0.00 0.00 3.69
1172 1239 2.189342 GAAGCGGTCATCTTCTTCTCG 58.811 52.381 0.00 0.00 37.53 4.04
1183 1250 0.608308 TTCTTCTCGGTCCTCGCTCA 60.608 55.000 0.00 0.00 39.05 4.26
1218 1289 0.320683 TGCTTCTGGTGATCGTGTGG 60.321 55.000 0.00 0.00 0.00 4.17
1225 1296 1.960763 GTGATCGTGTGGTGCTGCA 60.961 57.895 0.00 0.00 0.00 4.41
1251 1322 1.455217 GCCATTCCCATGCTCTGCT 60.455 57.895 0.00 0.00 0.00 4.24
1275 1346 1.777101 GCAAAGGTATGCAAACGCAA 58.223 45.000 0.00 0.00 45.70 4.85
1276 1347 1.455408 GCAAAGGTATGCAAACGCAAC 59.545 47.619 0.00 0.00 45.70 4.17
1277 1348 1.713404 CAAAGGTATGCAAACGCAACG 59.287 47.619 0.00 0.00 44.09 4.10
1278 1349 1.231221 AAGGTATGCAAACGCAACGA 58.769 45.000 0.00 0.00 44.09 3.85
1281 1352 0.162082 GTATGCAAACGCAACGACGA 59.838 50.000 0.00 0.00 44.09 4.20
1449 1616 4.224818 GCTATGCCAGAGGGAGAAGATAAT 59.775 45.833 0.00 0.00 35.59 1.28
1478 1666 1.693103 GAAACGGGGGAGGAGGGAT 60.693 63.158 0.00 0.00 0.00 3.85
1479 1667 1.984288 GAAACGGGGGAGGAGGGATG 61.984 65.000 0.00 0.00 0.00 3.51
1494 1683 0.535335 GGATGCAAGTAGGACGGACA 59.465 55.000 0.00 0.00 0.00 4.02
1538 1727 0.108138 CCGAGGAACCACAGGTGATC 60.108 60.000 0.00 0.00 35.34 2.92
1772 1991 2.152016 GGTTTCTTACTGGTGCTCCAC 58.848 52.381 2.64 0.00 39.03 4.02
1786 2006 1.419387 GCTCCACCTGGCAATCTCTAT 59.581 52.381 0.00 0.00 34.44 1.98
1868 2089 5.241506 TCATAAGCTATTACTGCAAATGGGC 59.758 40.000 0.00 0.00 0.00 5.36
1884 2105 1.557832 TGGGCTTAGCTCGGTTGTAAT 59.442 47.619 3.59 0.00 0.00 1.89
1895 2116 2.303600 TCGGTTGTAATACCCAGCAAGT 59.696 45.455 0.00 0.00 34.56 3.16
1921 2143 1.043673 GGCTATCCCAGTGACTCGGT 61.044 60.000 0.00 0.00 0.00 4.69
1948 2170 5.982516 GCCAGTGACTTCTTCTGTATATCTG 59.017 44.000 0.00 0.00 0.00 2.90
1967 2189 2.443203 TTGGCGGCCGATCTCCTA 60.443 61.111 33.48 14.86 0.00 2.94
1982 2204 5.707764 CGATCTCCTATCTACTGATCCAACA 59.292 44.000 0.00 0.00 34.32 3.33
2055 2288 0.320421 TTGCCCGCTGTAGTTGACTC 60.320 55.000 0.00 0.00 0.00 3.36
2105 2341 5.396654 GTCAGCTCGACAAAATTTGAAGTTC 59.603 40.000 13.19 0.00 44.69 3.01
2158 2394 2.483583 TTGCATGTCAACGTGGAAAC 57.516 45.000 6.81 0.00 39.65 2.78
2260 2499 2.322161 GCACAAAGCAGTACAAGCATG 58.678 47.619 12.08 11.87 44.79 4.06
2310 2558 2.331893 CGAATGACCTTTGCCGCCA 61.332 57.895 0.00 0.00 0.00 5.69
2312 2561 2.212900 GAATGACCTTTGCCGCCACC 62.213 60.000 0.00 0.00 0.00 4.61
2381 2632 3.285484 GGCCTGATCTTGTCAATGACAT 58.715 45.455 17.48 1.89 42.40 3.06
2421 2672 1.299976 GCCCCTAAGGACCAGTGTG 59.700 63.158 0.00 0.00 38.24 3.82
2493 3519 6.548321 ACCTATTTGGGTATGAGACAAAACA 58.452 36.000 0.00 0.00 41.11 2.83
2499 3525 4.938832 TGGGTATGAGACAAAACATTACCG 59.061 41.667 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.320610 TGGAATGGTAGGAGGAGAGAG 57.679 52.381 0.00 0.00 0.00 3.20
2 3 2.038295 GCATGGAATGGTAGGAGGAGAG 59.962 54.545 0.00 0.00 46.86 3.20
13 14 5.857471 TCATAGGAAAAAGCATGGAATGG 57.143 39.130 0.00 0.00 46.86 3.16
17 18 9.820725 CATTAAAATCATAGGAAAAAGCATGGA 57.179 29.630 0.00 0.00 0.00 3.41
18 19 9.603921 ACATTAAAATCATAGGAAAAAGCATGG 57.396 29.630 0.00 0.00 0.00 3.66
69 70 8.817296 GCAAACGAATTGTAAATCAAATTTTCG 58.183 29.630 10.87 10.87 44.51 3.46
70 71 9.643652 TGCAAACGAATTGTAAATCAAATTTTC 57.356 25.926 0.00 0.00 41.32 2.29
77 78 9.416794 ACAAATATGCAAACGAATTGTAAATCA 57.583 25.926 0.00 0.00 41.32 2.57
78 79 9.674208 CACAAATATGCAAACGAATTGTAAATC 57.326 29.630 0.00 0.00 41.32 2.17
79 80 9.202273 ACACAAATATGCAAACGAATTGTAAAT 57.798 25.926 0.00 0.00 41.32 1.40
80 81 8.581057 ACACAAATATGCAAACGAATTGTAAA 57.419 26.923 0.00 0.00 41.32 2.01
81 82 8.581057 AACACAAATATGCAAACGAATTGTAA 57.419 26.923 0.00 0.00 41.32 2.41
82 83 7.327275 GGAACACAAATATGCAAACGAATTGTA 59.673 33.333 0.00 0.00 41.32 2.41
83 84 6.145371 GGAACACAAATATGCAAACGAATTGT 59.855 34.615 0.00 0.00 41.32 2.71
84 85 6.365789 AGGAACACAAATATGCAAACGAATTG 59.634 34.615 0.00 0.00 42.21 2.32
85 86 6.454795 AGGAACACAAATATGCAAACGAATT 58.545 32.000 0.00 0.00 0.00 2.17
86 87 6.024552 AGGAACACAAATATGCAAACGAAT 57.975 33.333 0.00 0.00 0.00 3.34
87 88 5.446143 AGGAACACAAATATGCAAACGAA 57.554 34.783 0.00 0.00 0.00 3.85
88 89 5.446143 AAGGAACACAAATATGCAAACGA 57.554 34.783 0.00 0.00 0.00 3.85
89 90 7.081349 TCTTAAGGAACACAAATATGCAAACG 58.919 34.615 1.85 0.00 0.00 3.60
90 91 8.986477 ATCTTAAGGAACACAAATATGCAAAC 57.014 30.769 1.85 0.00 0.00 2.93
93 94 8.902806 CCTAATCTTAAGGAACACAAATATGCA 58.097 33.333 1.85 0.00 36.08 3.96
94 95 9.120538 TCCTAATCTTAAGGAACACAAATATGC 57.879 33.333 1.85 0.00 40.23 3.14
98 99 9.588096 AAAGTCCTAATCTTAAGGAACACAAAT 57.412 29.630 1.85 0.00 44.67 2.32
99 100 8.990163 AAAGTCCTAATCTTAAGGAACACAAA 57.010 30.769 1.85 0.00 44.67 2.83
115 116 9.901172 AAGAGTGTTCTTCTTTTAAAGTCCTAA 57.099 29.630 4.53 0.00 39.46 2.69
116 117 9.326413 CAAGAGTGTTCTTCTTTTAAAGTCCTA 57.674 33.333 4.53 0.00 41.71 2.94
117 118 8.047310 TCAAGAGTGTTCTTCTTTTAAAGTCCT 58.953 33.333 4.53 0.00 41.71 3.85
118 119 8.209917 TCAAGAGTGTTCTTCTTTTAAAGTCC 57.790 34.615 4.53 0.00 41.71 3.85
119 120 8.884726 ACTCAAGAGTGTTCTTCTTTTAAAGTC 58.115 33.333 1.20 0.00 41.71 3.01
120 121 8.794335 ACTCAAGAGTGTTCTTCTTTTAAAGT 57.206 30.769 1.20 0.00 41.71 2.66
162 163 8.405531 CGGTGATATTCAAAACAAGACCAATAT 58.594 33.333 0.00 0.00 0.00 1.28
163 164 7.392113 ACGGTGATATTCAAAACAAGACCAATA 59.608 33.333 0.00 0.00 0.00 1.90
164 165 6.208599 ACGGTGATATTCAAAACAAGACCAAT 59.791 34.615 0.00 0.00 0.00 3.16
165 166 5.533154 ACGGTGATATTCAAAACAAGACCAA 59.467 36.000 0.00 0.00 0.00 3.67
166 167 5.049060 CACGGTGATATTCAAAACAAGACCA 60.049 40.000 0.74 0.00 0.00 4.02
167 168 5.390613 CACGGTGATATTCAAAACAAGACC 58.609 41.667 0.74 0.00 0.00 3.85
168 169 5.180492 TCCACGGTGATATTCAAAACAAGAC 59.820 40.000 10.28 0.00 0.00 3.01
169 170 5.309638 TCCACGGTGATATTCAAAACAAGA 58.690 37.500 10.28 0.00 0.00 3.02
170 171 5.621197 TCCACGGTGATATTCAAAACAAG 57.379 39.130 10.28 0.00 0.00 3.16
171 172 6.582677 ATTCCACGGTGATATTCAAAACAA 57.417 33.333 10.28 0.00 0.00 2.83
172 173 7.689446 TTATTCCACGGTGATATTCAAAACA 57.311 32.000 10.28 0.00 0.00 2.83
173 174 8.024285 TGTTTATTCCACGGTGATATTCAAAAC 58.976 33.333 10.28 10.44 0.00 2.43
174 175 8.024285 GTGTTTATTCCACGGTGATATTCAAAA 58.976 33.333 10.28 0.00 0.00 2.44
175 176 7.175119 TGTGTTTATTCCACGGTGATATTCAAA 59.825 33.333 10.28 0.00 35.56 2.69
176 177 6.655425 TGTGTTTATTCCACGGTGATATTCAA 59.345 34.615 10.28 0.00 35.56 2.69
177 178 6.174049 TGTGTTTATTCCACGGTGATATTCA 58.826 36.000 10.28 1.17 35.56 2.57
178 179 6.671614 TGTGTTTATTCCACGGTGATATTC 57.328 37.500 10.28 0.00 35.56 1.75
179 180 7.639113 AATGTGTTTATTCCACGGTGATATT 57.361 32.000 10.28 0.00 35.56 1.28
180 181 7.122055 ACAAATGTGTTTATTCCACGGTGATAT 59.878 33.333 10.28 5.05 32.58 1.63
181 182 6.431543 ACAAATGTGTTTATTCCACGGTGATA 59.568 34.615 10.28 0.00 32.58 2.15
182 183 5.242838 ACAAATGTGTTTATTCCACGGTGAT 59.757 36.000 10.28 0.00 32.58 3.06
183 184 4.580995 ACAAATGTGTTTATTCCACGGTGA 59.419 37.500 10.28 0.00 32.58 4.02
184 185 4.865776 ACAAATGTGTTTATTCCACGGTG 58.134 39.130 0.00 0.00 32.58 4.94
185 186 4.022676 GGACAAATGTGTTTATTCCACGGT 60.023 41.667 0.00 0.00 38.41 4.83
186 187 4.022762 TGGACAAATGTGTTTATTCCACGG 60.023 41.667 0.00 0.00 38.41 4.94
187 188 5.114785 TGGACAAATGTGTTTATTCCACG 57.885 39.130 0.00 0.00 38.41 4.94
188 189 7.961325 ATTTGGACAAATGTGTTTATTCCAC 57.039 32.000 9.31 0.00 37.93 4.02
189 190 9.083422 TCTATTTGGACAAATGTGTTTATTCCA 57.917 29.630 17.92 0.00 40.83 3.53
190 191 9.921637 TTCTATTTGGACAAATGTGTTTATTCC 57.078 29.630 17.92 0.00 40.83 3.01
233 234 7.792374 TTAGATGCCTGATATCTTGTGAAAC 57.208 36.000 3.98 0.00 36.38 2.78
234 235 8.985315 ATTTAGATGCCTGATATCTTGTGAAA 57.015 30.769 3.98 0.00 36.38 2.69
235 236 8.985315 AATTTAGATGCCTGATATCTTGTGAA 57.015 30.769 3.98 0.00 36.38 3.18
236 237 8.985315 AAATTTAGATGCCTGATATCTTGTGA 57.015 30.769 3.98 0.00 36.38 3.58
238 239 9.851686 TGTAAATTTAGATGCCTGATATCTTGT 57.148 29.630 3.98 0.00 36.38 3.16
277 278 9.351572 ACTCTATCCTAGAAATATCTCCTCTCT 57.648 37.037 0.00 0.00 37.10 3.10
278 279 9.975218 AACTCTATCCTAGAAATATCTCCTCTC 57.025 37.037 0.00 0.00 37.10 3.20
287 288 9.407957 TCCCTCTCTAACTCTATCCTAGAAATA 57.592 37.037 0.00 0.00 33.75 1.40
288 289 8.295597 TCCCTCTCTAACTCTATCCTAGAAAT 57.704 38.462 0.00 0.00 33.75 2.17
289 290 7.202242 CCTCCCTCTCTAACTCTATCCTAGAAA 60.202 44.444 0.00 0.00 33.75 2.52
290 291 6.273730 CCTCCCTCTCTAACTCTATCCTAGAA 59.726 46.154 0.00 0.00 33.75 2.10
291 292 5.788533 CCTCCCTCTCTAACTCTATCCTAGA 59.211 48.000 0.00 0.00 0.00 2.43
292 293 5.550403 ACCTCCCTCTCTAACTCTATCCTAG 59.450 48.000 0.00 0.00 0.00 3.02
293 294 5.311121 CACCTCCCTCTCTAACTCTATCCTA 59.689 48.000 0.00 0.00 0.00 2.94
294 295 4.105697 CACCTCCCTCTCTAACTCTATCCT 59.894 50.000 0.00 0.00 0.00 3.24
295 296 4.403734 CACCTCCCTCTCTAACTCTATCC 58.596 52.174 0.00 0.00 0.00 2.59
296 297 4.105057 TCCACCTCCCTCTCTAACTCTATC 59.895 50.000 0.00 0.00 0.00 2.08
297 298 4.055820 TCCACCTCCCTCTCTAACTCTAT 58.944 47.826 0.00 0.00 0.00 1.98
298 299 3.460340 CTCCACCTCCCTCTCTAACTCTA 59.540 52.174 0.00 0.00 0.00 2.43
299 300 2.243736 CTCCACCTCCCTCTCTAACTCT 59.756 54.545 0.00 0.00 0.00 3.24
300 301 2.661718 CTCCACCTCCCTCTCTAACTC 58.338 57.143 0.00 0.00 0.00 3.01
301 302 1.342574 GCTCCACCTCCCTCTCTAACT 60.343 57.143 0.00 0.00 0.00 2.24
302 303 1.116308 GCTCCACCTCCCTCTCTAAC 58.884 60.000 0.00 0.00 0.00 2.34
303 304 0.710588 TGCTCCACCTCCCTCTCTAA 59.289 55.000 0.00 0.00 0.00 2.10
304 305 0.937441 ATGCTCCACCTCCCTCTCTA 59.063 55.000 0.00 0.00 0.00 2.43
305 306 0.690411 CATGCTCCACCTCCCTCTCT 60.690 60.000 0.00 0.00 0.00 3.10
306 307 1.828768 CATGCTCCACCTCCCTCTC 59.171 63.158 0.00 0.00 0.00 3.20
307 308 2.373707 GCATGCTCCACCTCCCTCT 61.374 63.158 11.37 0.00 0.00 3.69
308 309 2.191641 GCATGCTCCACCTCCCTC 59.808 66.667 11.37 0.00 0.00 4.30
309 310 3.790437 CGCATGCTCCACCTCCCT 61.790 66.667 17.13 0.00 0.00 4.20
310 311 4.101448 ACGCATGCTCCACCTCCC 62.101 66.667 17.13 0.00 0.00 4.30
311 312 2.821366 CACGCATGCTCCACCTCC 60.821 66.667 17.13 0.00 0.00 4.30
312 313 2.821366 CCACGCATGCTCCACCTC 60.821 66.667 17.13 0.00 0.00 3.85
313 314 3.321648 TCCACGCATGCTCCACCT 61.322 61.111 17.13 0.00 0.00 4.00
314 315 3.127533 GTCCACGCATGCTCCACC 61.128 66.667 17.13 0.00 0.00 4.61
315 316 3.127533 GGTCCACGCATGCTCCAC 61.128 66.667 17.13 6.75 0.00 4.02
316 317 3.321648 AGGTCCACGCATGCTCCA 61.322 61.111 17.13 0.00 0.00 3.86
317 318 2.599645 ATCAGGTCCACGCATGCTCC 62.600 60.000 17.13 9.93 0.00 4.70
318 319 0.104855 TATCAGGTCCACGCATGCTC 59.895 55.000 17.13 0.93 0.00 4.26
319 320 0.179073 GTATCAGGTCCACGCATGCT 60.179 55.000 17.13 0.00 0.00 3.79
320 321 0.179073 AGTATCAGGTCCACGCATGC 60.179 55.000 7.91 7.91 0.00 4.06
321 322 3.452755 TTAGTATCAGGTCCACGCATG 57.547 47.619 0.00 0.00 0.00 4.06
322 323 3.244215 CCATTAGTATCAGGTCCACGCAT 60.244 47.826 0.00 0.00 0.00 4.73
323 324 2.102420 CCATTAGTATCAGGTCCACGCA 59.898 50.000 0.00 0.00 0.00 5.24
324 325 2.102588 ACCATTAGTATCAGGTCCACGC 59.897 50.000 0.00 0.00 0.00 5.34
325 326 4.402056 AACCATTAGTATCAGGTCCACG 57.598 45.455 0.00 0.00 32.05 4.94
326 327 6.093633 GTCAAAACCATTAGTATCAGGTCCAC 59.906 42.308 0.00 0.00 32.05 4.02
327 328 6.177610 GTCAAAACCATTAGTATCAGGTCCA 58.822 40.000 0.00 0.00 32.05 4.02
328 329 6.093633 GTGTCAAAACCATTAGTATCAGGTCC 59.906 42.308 0.00 0.00 32.05 4.46
329 330 6.653320 TGTGTCAAAACCATTAGTATCAGGTC 59.347 38.462 0.00 0.00 32.05 3.85
330 331 6.430000 GTGTGTCAAAACCATTAGTATCAGGT 59.570 38.462 0.00 0.00 35.47 4.00
331 332 6.429692 TGTGTGTCAAAACCATTAGTATCAGG 59.570 38.462 0.00 0.00 0.00 3.86
332 333 7.433708 TGTGTGTCAAAACCATTAGTATCAG 57.566 36.000 0.00 0.00 0.00 2.90
333 334 7.644490 GTTGTGTGTCAAAACCATTAGTATCA 58.356 34.615 0.00 0.00 37.81 2.15
344 345 2.490115 TGGTCAGGTTGTGTGTCAAAAC 59.510 45.455 0.00 0.00 37.81 2.43
345 346 2.490115 GTGGTCAGGTTGTGTGTCAAAA 59.510 45.455 0.00 0.00 37.81 2.44
346 347 2.088423 GTGGTCAGGTTGTGTGTCAAA 58.912 47.619 0.00 0.00 37.81 2.69
347 348 1.745232 GTGGTCAGGTTGTGTGTCAA 58.255 50.000 0.00 0.00 0.00 3.18
348 349 0.461163 CGTGGTCAGGTTGTGTGTCA 60.461 55.000 0.00 0.00 0.00 3.58
349 350 1.157870 CCGTGGTCAGGTTGTGTGTC 61.158 60.000 0.00 0.00 0.00 3.67
350 351 1.153249 CCGTGGTCAGGTTGTGTGT 60.153 57.895 0.00 0.00 0.00 3.72
351 352 2.542907 GCCGTGGTCAGGTTGTGTG 61.543 63.158 0.00 0.00 0.00 3.82
352 353 2.203153 GCCGTGGTCAGGTTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
353 354 3.345808 CGCCGTGGTCAGGTTGTG 61.346 66.667 0.00 0.00 0.00 3.33
359 360 4.680237 TTCTGGCGCCGTGGTCAG 62.680 66.667 23.90 12.75 0.00 3.51
360 361 4.980805 GTTCTGGCGCCGTGGTCA 62.981 66.667 23.90 0.87 0.00 4.02
361 362 4.980805 TGTTCTGGCGCCGTGGTC 62.981 66.667 23.90 11.51 0.00 4.02
362 363 4.988598 CTGTTCTGGCGCCGTGGT 62.989 66.667 23.90 0.00 0.00 4.16
371 372 2.553904 GGATATCCCATGCCTGTTCTGG 60.554 54.545 11.02 0.00 34.14 3.86
372 373 2.787994 GGATATCCCATGCCTGTTCTG 58.212 52.381 11.02 0.00 34.14 3.02
385 386 1.623811 AGTACCATGCACGGGATATCC 59.376 52.381 13.87 13.87 0.00 2.59
386 387 2.353803 GGAGTACCATGCACGGGATATC 60.354 54.545 12.94 2.06 35.97 1.63
387 388 1.623811 GGAGTACCATGCACGGGATAT 59.376 52.381 12.94 0.00 35.97 1.63
388 389 1.045407 GGAGTACCATGCACGGGATA 58.955 55.000 12.94 0.00 35.97 2.59
389 390 1.696097 GGGAGTACCATGCACGGGAT 61.696 60.000 12.94 0.00 39.85 3.85
390 391 2.363975 GGGAGTACCATGCACGGGA 61.364 63.158 12.94 0.00 39.85 5.14
391 392 2.189521 GGGAGTACCATGCACGGG 59.810 66.667 2.80 3.91 39.85 5.28
392 393 1.144057 GAGGGAGTACCATGCACGG 59.856 63.158 0.00 0.00 43.89 4.94
393 394 1.144057 GGAGGGAGTACCATGCACG 59.856 63.158 0.00 0.00 43.89 5.34
394 395 1.144057 CGGAGGGAGTACCATGCAC 59.856 63.158 0.00 0.00 43.89 4.57
395 396 3.628989 CGGAGGGAGTACCATGCA 58.371 61.111 0.00 0.00 43.89 3.96
408 409 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
409 410 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
410 411 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
411 412 6.477688 TCTTATATGCGAACTAAAAAGGACCG 59.522 38.462 0.00 0.00 0.00 4.79
412 413 7.781548 TCTTATATGCGAACTAAAAAGGACC 57.218 36.000 0.00 0.00 0.00 4.46
419 420 9.594478 TCAGACAAATCTTATATGCGAACTAAA 57.406 29.630 0.00 0.00 30.42 1.85
420 421 9.594478 TTCAGACAAATCTTATATGCGAACTAA 57.406 29.630 0.00 0.00 30.42 2.24
421 422 9.764363 ATTCAGACAAATCTTATATGCGAACTA 57.236 29.630 0.00 0.00 30.42 2.24
422 423 8.668510 ATTCAGACAAATCTTATATGCGAACT 57.331 30.769 0.00 0.00 30.42 3.01
423 424 9.374960 GAATTCAGACAAATCTTATATGCGAAC 57.625 33.333 0.00 0.00 30.42 3.95
424 425 9.108284 TGAATTCAGACAAATCTTATATGCGAA 57.892 29.630 3.38 0.00 30.42 4.70
425 426 8.551205 GTGAATTCAGACAAATCTTATATGCGA 58.449 33.333 8.80 0.00 30.42 5.10
426 427 7.528516 CGTGAATTCAGACAAATCTTATATGCG 59.471 37.037 8.80 0.00 30.42 4.73
427 428 7.322222 GCGTGAATTCAGACAAATCTTATATGC 59.678 37.037 8.80 0.00 30.42 3.14
428 429 7.800380 GGCGTGAATTCAGACAAATCTTATATG 59.200 37.037 8.80 0.00 30.42 1.78
429 430 7.716998 AGGCGTGAATTCAGACAAATCTTATAT 59.283 33.333 8.80 0.00 30.42 0.86
430 431 7.047891 AGGCGTGAATTCAGACAAATCTTATA 58.952 34.615 8.80 0.00 30.42 0.98
431 432 5.882557 AGGCGTGAATTCAGACAAATCTTAT 59.117 36.000 8.80 0.00 30.42 1.73
432 433 5.245531 AGGCGTGAATTCAGACAAATCTTA 58.754 37.500 8.80 0.00 30.42 2.10
433 434 4.074970 AGGCGTGAATTCAGACAAATCTT 58.925 39.130 8.80 0.00 30.42 2.40
434 435 3.679389 AGGCGTGAATTCAGACAAATCT 58.321 40.909 8.80 0.00 34.57 2.40
435 436 3.484229 CGAGGCGTGAATTCAGACAAATC 60.484 47.826 8.80 2.21 0.00 2.17
436 437 2.416547 CGAGGCGTGAATTCAGACAAAT 59.583 45.455 8.80 0.00 0.00 2.32
437 438 1.798223 CGAGGCGTGAATTCAGACAAA 59.202 47.619 8.80 0.00 0.00 2.83
438 439 1.270094 ACGAGGCGTGAATTCAGACAA 60.270 47.619 8.80 0.00 39.18 3.18
439 440 0.317160 ACGAGGCGTGAATTCAGACA 59.683 50.000 8.80 0.00 39.18 3.41
440 441 2.273370 TACGAGGCGTGAATTCAGAC 57.727 50.000 8.80 5.53 41.39 3.51
441 442 3.250744 CTTTACGAGGCGTGAATTCAGA 58.749 45.455 8.80 0.00 41.39 3.27
442 443 2.993899 ACTTTACGAGGCGTGAATTCAG 59.006 45.455 8.80 4.54 41.39 3.02
443 444 3.034721 ACTTTACGAGGCGTGAATTCA 57.965 42.857 3.38 3.38 41.39 2.57
444 445 4.084223 TCAAACTTTACGAGGCGTGAATTC 60.084 41.667 2.33 0.00 41.39 2.17
445 446 3.810941 TCAAACTTTACGAGGCGTGAATT 59.189 39.130 2.33 0.00 41.39 2.17
446 447 3.185797 GTCAAACTTTACGAGGCGTGAAT 59.814 43.478 2.33 0.00 41.39 2.57
447 448 2.540931 GTCAAACTTTACGAGGCGTGAA 59.459 45.455 2.33 0.00 41.39 3.18
448 449 2.129607 GTCAAACTTTACGAGGCGTGA 58.870 47.619 2.33 0.00 41.39 4.35
449 450 1.193874 GGTCAAACTTTACGAGGCGTG 59.806 52.381 2.33 0.00 41.39 5.34
450 451 1.202557 TGGTCAAACTTTACGAGGCGT 60.203 47.619 0.00 0.00 44.35 5.68
451 452 1.504359 TGGTCAAACTTTACGAGGCG 58.496 50.000 0.00 0.00 0.00 5.52
452 453 3.263602 GTTGGTCAAACTTTACGAGGC 57.736 47.619 0.00 0.00 35.75 4.70
501 502 9.836076 CGCATCTAATGATATTGATTTCACATT 57.164 29.630 0.00 0.00 33.56 2.71
502 503 9.006839 ACGCATCTAATGATATTGATTTCACAT 57.993 29.630 0.00 0.00 0.00 3.21
503 504 8.382030 ACGCATCTAATGATATTGATTTCACA 57.618 30.769 0.00 0.00 0.00 3.58
504 505 8.498358 TGACGCATCTAATGATATTGATTTCAC 58.502 33.333 0.00 0.00 0.00 3.18
505 506 8.606040 TGACGCATCTAATGATATTGATTTCA 57.394 30.769 0.00 0.00 0.00 2.69
506 507 9.486857 CATGACGCATCTAATGATATTGATTTC 57.513 33.333 0.00 0.00 0.00 2.17
507 508 9.223099 TCATGACGCATCTAATGATATTGATTT 57.777 29.630 0.00 0.00 0.00 2.17
508 509 8.663025 GTCATGACGCATCTAATGATATTGATT 58.337 33.333 10.69 0.00 32.07 2.57
509 510 8.039538 AGTCATGACGCATCTAATGATATTGAT 58.960 33.333 19.85 0.00 36.20 2.57
510 511 7.381323 AGTCATGACGCATCTAATGATATTGA 58.619 34.615 19.85 0.00 36.20 2.57
511 512 7.592439 AGTCATGACGCATCTAATGATATTG 57.408 36.000 19.85 0.00 36.20 1.90
512 513 9.710900 TTAAGTCATGACGCATCTAATGATATT 57.289 29.630 19.85 6.35 36.20 1.28
513 514 9.710900 TTTAAGTCATGACGCATCTAATGATAT 57.289 29.630 19.85 0.00 36.20 1.63
514 515 9.710900 ATTTAAGTCATGACGCATCTAATGATA 57.289 29.630 19.85 1.25 36.20 2.15
515 516 8.613060 ATTTAAGTCATGACGCATCTAATGAT 57.387 30.769 19.85 0.00 36.20 2.45
516 517 8.437360 AATTTAAGTCATGACGCATCTAATGA 57.563 30.769 19.85 0.58 36.20 2.57
517 518 9.507280 AAAATTTAAGTCATGACGCATCTAATG 57.493 29.630 19.85 0.00 36.20 1.90
518 519 9.722056 GAAAATTTAAGTCATGACGCATCTAAT 57.278 29.630 19.85 11.61 36.20 1.73
519 520 8.726068 TGAAAATTTAAGTCATGACGCATCTAA 58.274 29.630 19.85 10.68 36.20 2.10
520 521 8.262715 TGAAAATTTAAGTCATGACGCATCTA 57.737 30.769 19.85 5.66 36.20 1.98
521 522 7.144722 TGAAAATTTAAGTCATGACGCATCT 57.855 32.000 19.85 6.46 36.20 2.90
522 523 7.975866 ATGAAAATTTAAGTCATGACGCATC 57.024 32.000 19.85 11.06 36.20 3.91
524 525 9.288124 CAATATGAAAATTTAAGTCATGACGCA 57.712 29.630 19.85 9.13 34.01 5.24
525 526 9.289303 ACAATATGAAAATTTAAGTCATGACGC 57.711 29.630 19.85 0.00 34.01 5.19
547 548 9.969001 ACACCTACCATGTTAAAGTTATACAAT 57.031 29.630 0.00 0.00 0.00 2.71
548 549 9.439500 GACACCTACCATGTTAAAGTTATACAA 57.561 33.333 0.00 0.00 0.00 2.41
549 550 7.760794 CGACACCTACCATGTTAAAGTTATACA 59.239 37.037 0.00 0.00 0.00 2.29
550 551 7.975616 TCGACACCTACCATGTTAAAGTTATAC 59.024 37.037 0.00 0.00 0.00 1.47
551 552 8.065473 TCGACACCTACCATGTTAAAGTTATA 57.935 34.615 0.00 0.00 0.00 0.98
552 553 6.938507 TCGACACCTACCATGTTAAAGTTAT 58.061 36.000 0.00 0.00 0.00 1.89
553 554 6.343716 TCGACACCTACCATGTTAAAGTTA 57.656 37.500 0.00 0.00 0.00 2.24
554 555 5.217978 TCGACACCTACCATGTTAAAGTT 57.782 39.130 0.00 0.00 0.00 2.66
555 556 4.877378 TCGACACCTACCATGTTAAAGT 57.123 40.909 0.00 0.00 0.00 2.66
556 557 8.433421 AAATATCGACACCTACCATGTTAAAG 57.567 34.615 0.00 0.00 0.00 1.85
557 558 8.795842 AAAATATCGACACCTACCATGTTAAA 57.204 30.769 0.00 0.00 0.00 1.52
558 559 8.795842 AAAAATATCGACACCTACCATGTTAA 57.204 30.769 0.00 0.00 0.00 2.01
632 633 8.645110 CCTCCGGTCCTTTTTACTCTAAATATA 58.355 37.037 0.00 0.00 0.00 0.86
633 634 7.346436 TCCTCCGGTCCTTTTTACTCTAAATAT 59.654 37.037 0.00 0.00 0.00 1.28
634 635 6.669154 TCCTCCGGTCCTTTTTACTCTAAATA 59.331 38.462 0.00 0.00 0.00 1.40
635 636 5.486419 TCCTCCGGTCCTTTTTACTCTAAAT 59.514 40.000 0.00 0.00 0.00 1.40
636 637 4.840115 TCCTCCGGTCCTTTTTACTCTAAA 59.160 41.667 0.00 0.00 0.00 1.85
637 638 4.419282 TCCTCCGGTCCTTTTTACTCTAA 58.581 43.478 0.00 0.00 0.00 2.10
638 639 4.051661 TCCTCCGGTCCTTTTTACTCTA 57.948 45.455 0.00 0.00 0.00 2.43
639 640 2.898662 TCCTCCGGTCCTTTTTACTCT 58.101 47.619 0.00 0.00 0.00 3.24
640 641 3.007723 ACTTCCTCCGGTCCTTTTTACTC 59.992 47.826 0.00 0.00 0.00 2.59
641 642 2.977580 ACTTCCTCCGGTCCTTTTTACT 59.022 45.455 0.00 0.00 0.00 2.24
642 643 3.413846 ACTTCCTCCGGTCCTTTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
643 644 4.419282 TCTACTTCCTCCGGTCCTTTTTA 58.581 43.478 0.00 0.00 0.00 1.52
644 645 3.245441 TCTACTTCCTCCGGTCCTTTTT 58.755 45.455 0.00 0.00 0.00 1.94
645 646 2.898662 TCTACTTCCTCCGGTCCTTTT 58.101 47.619 0.00 0.00 0.00 2.27
646 647 2.617840 TCTACTTCCTCCGGTCCTTT 57.382 50.000 0.00 0.00 0.00 3.11
647 648 2.850695 ATCTACTTCCTCCGGTCCTT 57.149 50.000 0.00 0.00 0.00 3.36
648 649 3.967467 TTATCTACTTCCTCCGGTCCT 57.033 47.619 0.00 0.00 0.00 3.85
649 650 3.510753 GGATTATCTACTTCCTCCGGTCC 59.489 52.174 0.00 0.00 0.00 4.46
650 651 3.190953 CGGATTATCTACTTCCTCCGGTC 59.809 52.174 0.00 0.00 41.38 4.79
651 652 3.155501 CGGATTATCTACTTCCTCCGGT 58.844 50.000 0.00 0.00 41.38 5.28
652 653 2.094649 GCGGATTATCTACTTCCTCCGG 60.095 54.545 10.41 0.00 44.35 5.14
653 654 2.820787 AGCGGATTATCTACTTCCTCCG 59.179 50.000 4.51 4.51 46.32 4.63
654 655 4.083565 AGAGCGGATTATCTACTTCCTCC 58.916 47.826 0.00 0.00 0.00 4.30
655 656 4.142773 CGAGAGCGGATTATCTACTTCCTC 60.143 50.000 0.00 0.00 0.00 3.71
656 657 3.754323 CGAGAGCGGATTATCTACTTCCT 59.246 47.826 0.00 0.00 0.00 3.36
657 658 3.752222 TCGAGAGCGGATTATCTACTTCC 59.248 47.826 0.00 0.00 38.28 3.46
658 659 5.554822 ATCGAGAGCGGATTATCTACTTC 57.445 43.478 0.00 0.00 38.28 3.01
659 660 5.704888 CAATCGAGAGCGGATTATCTACTT 58.295 41.667 0.00 0.00 38.28 2.24
660 661 4.380023 GCAATCGAGAGCGGATTATCTACT 60.380 45.833 0.00 0.00 38.28 2.57
661 662 3.854809 GCAATCGAGAGCGGATTATCTAC 59.145 47.826 0.00 0.00 38.28 2.59
662 663 4.098055 GCAATCGAGAGCGGATTATCTA 57.902 45.455 0.00 0.00 38.28 1.98
663 664 2.953020 GCAATCGAGAGCGGATTATCT 58.047 47.619 0.00 0.00 38.28 1.98
672 673 2.029904 GAGCAACCGCAATCGAGAGC 62.030 60.000 2.02 2.02 42.27 4.09
673 674 0.737367 TGAGCAACCGCAATCGAGAG 60.737 55.000 0.00 0.00 42.27 3.20
674 675 0.737367 CTGAGCAACCGCAATCGAGA 60.737 55.000 0.00 0.00 42.27 4.04
675 676 1.712081 CTGAGCAACCGCAATCGAG 59.288 57.895 0.00 0.00 42.27 4.04
676 677 2.390599 GCTGAGCAACCGCAATCGA 61.391 57.895 0.00 0.00 42.27 3.59
677 678 1.083806 TAGCTGAGCAACCGCAATCG 61.084 55.000 7.39 0.00 42.27 3.34
678 679 0.654683 CTAGCTGAGCAACCGCAATC 59.345 55.000 7.39 0.00 42.27 2.67
679 680 2.772739 CTAGCTGAGCAACCGCAAT 58.227 52.632 7.39 0.00 42.27 3.56
760 768 1.955663 GGCCACCGAAACGTACGTT 60.956 57.895 27.15 27.15 40.45 3.99
948 968 0.035152 TCAATGCCGCCACTGAAGAT 60.035 50.000 0.00 0.00 0.00 2.40
955 976 0.031994 ACAACTTTCAATGCCGCCAC 59.968 50.000 0.00 0.00 0.00 5.01
1055 1080 1.392710 GGCTGCGCTACTCCTCCTAA 61.393 60.000 9.73 0.00 0.00 2.69
1067 1097 3.423162 TTTGTGGTTGTGGCTGCGC 62.423 57.895 0.00 0.00 0.00 6.09
1118 1148 4.308265 GACGATCCTATACTGCTTTTCCC 58.692 47.826 0.00 0.00 0.00 3.97
1189 1256 2.202388 CAGAAGCATTGCCACGCG 60.202 61.111 3.53 3.53 0.00 6.01
1200 1271 0.320771 ACCACACGATCACCAGAAGC 60.321 55.000 0.00 0.00 0.00 3.86
1225 1296 2.629498 ATGGGAATGGCAGCAGGGT 61.629 57.895 0.00 0.00 0.00 4.34
1270 1341 0.933509 GAACTGACTCGTCGTTGCGT 60.934 55.000 10.39 0.00 0.00 5.24
1272 1343 2.243407 CTAGAACTGACTCGTCGTTGC 58.757 52.381 10.39 0.00 0.00 4.17
1275 1346 3.401182 AGAACTAGAACTGACTCGTCGT 58.599 45.455 0.00 0.00 0.00 4.34
1276 1347 4.407496 AAGAACTAGAACTGACTCGTCG 57.593 45.455 0.00 0.00 0.00 5.12
1410 1529 2.071778 TAGCCCCCTGATCAAATTGC 57.928 50.000 0.00 0.00 0.00 3.56
1436 1603 2.061061 CTGCCCCATTATCTTCTCCCT 58.939 52.381 0.00 0.00 0.00 4.20
1449 1616 2.434331 CCGTTTCCTTCTGCCCCA 59.566 61.111 0.00 0.00 0.00 4.96
1478 1666 0.830444 AGGTGTCCGTCCTACTTGCA 60.830 55.000 0.00 0.00 33.04 4.08
1479 1667 0.108756 GAGGTGTCCGTCCTACTTGC 60.109 60.000 0.00 0.00 35.20 4.01
1538 1727 0.321122 GTCTTGGCAGGAGTCACCAG 60.321 60.000 0.00 0.00 42.04 4.00
1746 1965 2.352715 GCACCAGTAAGAAACCCATTGC 60.353 50.000 0.00 0.00 0.00 3.56
1786 2006 7.880713 GGGAAGGCCAGAAAAACAAAAATATTA 59.119 33.333 5.01 0.00 35.15 0.98
1821 2042 0.763035 AACCAGTTCCTACAAGCGGT 59.237 50.000 0.00 0.00 0.00 5.68
1857 2078 0.379669 CGAGCTAAGCCCATTTGCAG 59.620 55.000 0.00 0.00 41.44 4.41
1868 2089 4.369182 CTGGGTATTACAACCGAGCTAAG 58.631 47.826 0.00 0.00 38.34 2.18
1884 2105 1.278127 GCCTTACTGACTTGCTGGGTA 59.722 52.381 0.00 0.00 0.00 3.69
1895 2116 3.031736 GTCACTGGGATAGCCTTACTGA 58.968 50.000 0.00 0.00 0.00 3.41
1921 2143 7.561722 AGATATACAGAAGAAGTCACTGGCTTA 59.438 37.037 0.00 0.00 36.17 3.09
1967 2189 4.040217 GGATCAGCTGTTGGATCAGTAGAT 59.960 45.833 14.67 0.00 41.30 1.98
2105 2341 8.246180 AGGCTCATTATACTGTGAACAAAATTG 58.754 33.333 0.00 0.00 0.00 2.32
2127 2363 3.225104 TGACATGCAAAAGAAGAAGGCT 58.775 40.909 0.00 0.00 0.00 4.58
2225 2463 1.808411 TGTGCTTCCGGTGAATCTTC 58.192 50.000 0.00 0.00 0.00 2.87
2312 2561 3.257561 CATCGGCGGCTCGTTCTG 61.258 66.667 7.21 0.00 0.00 3.02
2335 2586 1.984817 GGTATGGGACCGGTGACAA 59.015 57.895 14.63 0.00 38.87 3.18
2361 2612 3.314635 GGATGTCATTGACAAGATCAGGC 59.685 47.826 22.44 5.87 45.96 4.85
2381 2632 1.795768 GTGCACGAAGACTTCATGGA 58.204 50.000 12.80 7.38 0.00 3.41
2421 2672 0.759060 GGTACCCATTTGCCATCCCC 60.759 60.000 0.00 0.00 0.00 4.81
2469 3245 6.548321 TGTTTTGTCTCATACCCAAATAGGT 58.452 36.000 0.00 0.00 44.37 3.08
2470 3246 7.645058 ATGTTTTGTCTCATACCCAAATAGG 57.355 36.000 0.00 0.00 37.03 2.57
2476 3252 4.938832 CGGTAATGTTTTGTCTCATACCCA 59.061 41.667 0.00 0.00 0.00 4.51
2480 3506 5.820423 CCCATCGGTAATGTTTTGTCTCATA 59.180 40.000 0.00 0.00 33.13 2.15
2499 3525 8.103305 TGAGATTTGCCTATTTCTATACCCATC 58.897 37.037 0.00 0.00 0.00 3.51
2507 3533 6.489603 TGGGTTTGAGATTTGCCTATTTCTA 58.510 36.000 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.