Multiple sequence alignment - TraesCS3A01G010700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G010700 chr3A 100.000 2571 0 0 1 2571 9044707 9047277 0.000000e+00 4748.0
1 TraesCS3A01G010700 chr3A 86.822 129 17 0 981 1109 8970694 8970822 7.410000e-31 145.0
2 TraesCS3A01G010700 chr3A 86.047 129 18 0 981 1109 8954056 8954184 3.450000e-29 139.0
3 TraesCS3A01G010700 chr3A 90.323 62 4 2 1823 1883 8955039 8955099 2.120000e-11 80.5
4 TraesCS3A01G010700 chr3A 90.164 61 6 0 1823 1883 8971677 8971737 2.120000e-11 80.5
5 TraesCS3A01G010700 chrUn 87.693 1487 111 38 432 1904 323805243 323803815 0.000000e+00 1666.0
6 TraesCS3A01G010700 chrUn 89.608 587 47 5 1996 2571 449656146 449655563 0.000000e+00 734.0
7 TraesCS3A01G010700 chrUn 83.206 786 64 36 432 1204 350575786 350575056 0.000000e+00 658.0
8 TraesCS3A01G010700 chrUn 93.897 426 25 1 1480 1904 462122734 462122309 2.160000e-180 641.0
9 TraesCS3A01G010700 chrUn 93.519 432 27 1 1474 1904 471588585 471589016 2.160000e-180 641.0
10 TraesCS3A01G010700 chr3B 87.609 1493 113 38 426 1904 6042701 6044135 0.000000e+00 1666.0
11 TraesCS3A01G010700 chr3B 87.927 1143 89 30 431 1566 5855644 5854544 0.000000e+00 1301.0
12 TraesCS3A01G010700 chr3B 89.726 584 46 5 1996 2568 6044529 6045109 0.000000e+00 734.0
13 TraesCS3A01G010700 chr3B 84.752 505 63 5 2075 2571 5853483 5852985 6.390000e-136 494.0
14 TraesCS3A01G010700 chr3B 90.554 307 20 3 1606 1904 5854233 5853928 5.150000e-107 398.0
15 TraesCS3A01G010700 chr3D 76.506 332 59 9 1307 1620 631391 631061 2.050000e-36 163.0
16 TraesCS3A01G010700 chr3D 81.928 83 15 0 432 514 293808810 293808728 1.280000e-08 71.3
17 TraesCS3A01G010700 chr7B 86.395 147 13 6 76 216 650114930 650114785 1.230000e-33 154.0
18 TraesCS3A01G010700 chr7B 89.899 99 9 1 199 296 650114766 650114668 2.690000e-25 126.0
19 TraesCS3A01G010700 chr4A 88.636 88 10 0 426 513 614034964 614035051 9.730000e-20 108.0
20 TraesCS3A01G010700 chr5D 87.640 89 11 0 426 514 539775063 539775151 1.260000e-18 104.0
21 TraesCS3A01G010700 chr7A 83.333 78 11 2 434 510 35656950 35657026 1.280000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G010700 chr3A 9044707 9047277 2570 False 4748 4748 100.000000 1 2571 1 chr3A.!!$F1 2570
1 TraesCS3A01G010700 chrUn 323803815 323805243 1428 True 1666 1666 87.693000 432 1904 1 chrUn.!!$R1 1472
2 TraesCS3A01G010700 chrUn 449655563 449656146 583 True 734 734 89.608000 1996 2571 1 chrUn.!!$R3 575
3 TraesCS3A01G010700 chrUn 350575056 350575786 730 True 658 658 83.206000 432 1204 1 chrUn.!!$R2 772
4 TraesCS3A01G010700 chr3B 6042701 6045109 2408 False 1200 1666 88.667500 426 2568 2 chr3B.!!$F1 2142
5 TraesCS3A01G010700 chr3B 5852985 5855644 2659 True 731 1301 87.744333 431 2571 3 chr3B.!!$R1 2140

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.029834 CACAAGATATGCGCCTTGCC 59.970 55.0 19.79 0.65 45.60 4.52 F
271 272 0.030638 CCTCCACGCACAAACTTTGG 59.969 55.0 6.47 0.00 34.12 3.28 F
421 422 0.044855 AGGATTACCCCAGCCTCTGT 59.955 55.0 0.00 0.00 36.73 3.41 F
1158 1183 0.036105 AGTCGATGTTCATGCTGGCA 60.036 50.0 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1109 1133 0.034477 AAATAACAGGGTCCGCCAGG 60.034 55.0 0.00 0.0 36.17 4.45 R
1141 1166 0.036105 AGTGCCAGCATGAACATCGA 60.036 50.0 0.00 0.0 39.69 3.59 R
1428 1453 0.108329 GTAGACATGGTCACACCCCG 60.108 60.0 0.00 0.0 37.50 5.73 R
2282 2928 0.261696 ACCCAAAGGCCACTGAAAGT 59.738 50.0 5.01 0.0 44.06 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.159984 GCTGTTGAAGCGAGGACG 58.840 61.111 0.00 0.00 43.45 4.79
30 31 4.994201 GAGGACGCGCGTGACACA 62.994 66.667 42.90 0.00 0.00 3.72
39 40 3.991051 CGTGACACAGGCTCGGGT 61.991 66.667 6.37 0.00 0.00 5.28
40 41 2.048127 GTGACACAGGCTCGGGTC 60.048 66.667 11.03 11.03 0.00 4.46
41 42 3.680786 TGACACAGGCTCGGGTCG 61.681 66.667 12.51 0.00 33.04 4.79
42 43 3.371063 GACACAGGCTCGGGTCGA 61.371 66.667 4.07 0.00 0.00 4.20
43 44 3.628280 GACACAGGCTCGGGTCGAC 62.628 68.421 7.13 7.13 0.00 4.20
44 45 3.680786 CACAGGCTCGGGTCGACA 61.681 66.667 18.91 0.00 0.00 4.35
45 46 2.680352 ACAGGCTCGGGTCGACAT 60.680 61.111 18.91 0.00 0.00 3.06
46 47 2.105128 CAGGCTCGGGTCGACATC 59.895 66.667 18.91 7.97 0.00 3.06
47 48 3.148279 AGGCTCGGGTCGACATCC 61.148 66.667 18.91 9.39 0.00 3.51
48 49 3.148279 GGCTCGGGTCGACATCCT 61.148 66.667 18.91 0.00 0.00 3.24
49 50 1.826921 GGCTCGGGTCGACATCCTA 60.827 63.158 18.91 1.30 0.00 2.94
50 51 1.655329 GCTCGGGTCGACATCCTAG 59.345 63.158 18.91 12.34 0.00 3.02
51 52 1.655329 CTCGGGTCGACATCCTAGC 59.345 63.158 18.91 0.00 0.00 3.42
52 53 2.119147 CTCGGGTCGACATCCTAGCG 62.119 65.000 18.91 0.00 0.00 4.26
53 54 2.184830 CGGGTCGACATCCTAGCGA 61.185 63.158 18.91 0.00 0.00 4.93
59 60 2.219458 TCGACATCCTAGCGACTTAGG 58.781 52.381 0.00 0.00 41.36 2.69
65 66 3.014304 TCCTAGCGACTTAGGATGTGT 57.986 47.619 6.67 0.00 43.30 3.72
66 67 2.688446 TCCTAGCGACTTAGGATGTGTG 59.312 50.000 6.67 0.00 43.30 3.82
67 68 2.688446 CCTAGCGACTTAGGATGTGTGA 59.312 50.000 2.84 0.00 42.39 3.58
68 69 2.656560 AGCGACTTAGGATGTGTGAC 57.343 50.000 0.00 0.00 0.00 3.67
69 70 1.204941 AGCGACTTAGGATGTGTGACC 59.795 52.381 0.00 0.00 0.00 4.02
70 71 1.067142 GCGACTTAGGATGTGTGACCA 60.067 52.381 0.00 0.00 0.00 4.02
71 72 2.611971 GCGACTTAGGATGTGTGACCAA 60.612 50.000 0.00 0.00 0.00 3.67
72 73 3.254060 CGACTTAGGATGTGTGACCAAG 58.746 50.000 0.00 0.00 0.00 3.61
73 74 3.056821 CGACTTAGGATGTGTGACCAAGA 60.057 47.826 0.00 0.00 0.00 3.02
74 75 4.560716 CGACTTAGGATGTGTGACCAAGAA 60.561 45.833 0.00 0.00 0.00 2.52
75 76 5.491982 GACTTAGGATGTGTGACCAAGAAT 58.508 41.667 0.00 0.00 0.00 2.40
76 77 5.248640 ACTTAGGATGTGTGACCAAGAATG 58.751 41.667 0.00 0.00 0.00 2.67
87 88 0.381801 CCAAGAATGGCACCATACGC 59.618 55.000 1.81 0.00 40.58 4.42
93 94 4.564110 GGCACCATACGCCCTCCC 62.564 72.222 0.00 0.00 44.22 4.30
94 95 4.910585 GCACCATACGCCCTCCCG 62.911 72.222 0.00 0.00 0.00 5.14
95 96 4.235762 CACCATACGCCCTCCCGG 62.236 72.222 0.00 0.00 0.00 5.73
105 106 4.659172 CCTCCCGGCTGCCAAACA 62.659 66.667 20.29 0.00 0.00 2.83
106 107 2.361610 CTCCCGGCTGCCAAACAT 60.362 61.111 20.29 0.00 0.00 2.71
107 108 2.676121 TCCCGGCTGCCAAACATG 60.676 61.111 20.29 0.28 0.00 3.21
108 109 2.990967 CCCGGCTGCCAAACATGT 60.991 61.111 20.29 0.00 0.00 3.21
109 110 2.573083 CCCGGCTGCCAAACATGTT 61.573 57.895 20.29 4.92 0.00 2.71
110 111 1.367102 CCGGCTGCCAAACATGTTT 59.633 52.632 18.13 18.13 0.00 2.83
111 112 0.667184 CCGGCTGCCAAACATGTTTC 60.667 55.000 20.85 11.49 0.00 2.78
112 113 0.314935 CGGCTGCCAAACATGTTTCT 59.685 50.000 20.85 0.00 0.00 2.52
113 114 1.666888 CGGCTGCCAAACATGTTTCTC 60.667 52.381 20.85 14.97 0.00 2.87
114 115 1.337167 GGCTGCCAAACATGTTTCTCC 60.337 52.381 20.85 12.89 0.00 3.71
115 116 1.615392 GCTGCCAAACATGTTTCTCCT 59.385 47.619 20.85 0.00 0.00 3.69
116 117 2.819608 GCTGCCAAACATGTTTCTCCTA 59.180 45.455 20.85 5.65 0.00 2.94
117 118 3.119708 GCTGCCAAACATGTTTCTCCTAG 60.120 47.826 20.85 14.62 0.00 3.02
118 119 2.819608 TGCCAAACATGTTTCTCCTAGC 59.180 45.455 20.85 15.67 0.00 3.42
119 120 2.164422 GCCAAACATGTTTCTCCTAGCC 59.836 50.000 20.85 0.00 0.00 3.93
120 121 2.420022 CCAAACATGTTTCTCCTAGCCG 59.580 50.000 20.85 6.68 0.00 5.52
121 122 3.074412 CAAACATGTTTCTCCTAGCCGT 58.926 45.455 20.85 0.00 0.00 5.68
122 123 3.418684 AACATGTTTCTCCTAGCCGTT 57.581 42.857 4.92 0.00 0.00 4.44
123 124 2.699954 ACATGTTTCTCCTAGCCGTTG 58.300 47.619 0.00 0.00 0.00 4.10
124 125 2.038557 ACATGTTTCTCCTAGCCGTTGT 59.961 45.455 0.00 0.00 0.00 3.32
125 126 2.163818 TGTTTCTCCTAGCCGTTGTG 57.836 50.000 0.00 0.00 0.00 3.33
126 127 1.414919 TGTTTCTCCTAGCCGTTGTGT 59.585 47.619 0.00 0.00 0.00 3.72
127 128 1.798813 GTTTCTCCTAGCCGTTGTGTG 59.201 52.381 0.00 0.00 0.00 3.82
128 129 0.320421 TTCTCCTAGCCGTTGTGTGC 60.320 55.000 0.00 0.00 0.00 4.57
129 130 1.741770 CTCCTAGCCGTTGTGTGCC 60.742 63.158 0.00 0.00 0.00 5.01
130 131 3.118454 CCTAGCCGTTGTGTGCCG 61.118 66.667 0.00 0.00 0.00 5.69
131 132 3.788766 CTAGCCGTTGTGTGCCGC 61.789 66.667 0.00 0.00 0.00 6.53
148 149 3.882326 CCGCATCTCTGGCCCCAT 61.882 66.667 0.00 0.00 0.00 4.00
149 150 2.593725 CGCATCTCTGGCCCCATG 60.594 66.667 0.00 0.00 0.00 3.66
150 151 2.910994 GCATCTCTGGCCCCATGC 60.911 66.667 0.00 4.83 40.16 4.06
151 152 2.593725 CATCTCTGGCCCCATGCG 60.594 66.667 0.00 0.00 42.61 4.73
152 153 4.575973 ATCTCTGGCCCCATGCGC 62.576 66.667 0.00 0.00 42.61 6.09
162 163 3.554692 CCATGCGCCTCGTCGTTC 61.555 66.667 4.18 0.00 0.00 3.95
163 164 3.554692 CATGCGCCTCGTCGTTCC 61.555 66.667 4.18 0.00 0.00 3.62
164 165 4.063967 ATGCGCCTCGTCGTTCCA 62.064 61.111 4.18 0.00 0.00 3.53
167 168 2.126071 CGCCTCGTCGTTCCACAT 60.126 61.111 0.00 0.00 0.00 3.21
168 169 2.158959 CGCCTCGTCGTTCCACATC 61.159 63.158 0.00 0.00 0.00 3.06
169 170 1.215647 GCCTCGTCGTTCCACATCT 59.784 57.895 0.00 0.00 0.00 2.90
170 171 0.802607 GCCTCGTCGTTCCACATCTC 60.803 60.000 0.00 0.00 0.00 2.75
171 172 0.811915 CCTCGTCGTTCCACATCTCT 59.188 55.000 0.00 0.00 0.00 3.10
172 173 1.468224 CCTCGTCGTTCCACATCTCTG 60.468 57.143 0.00 0.00 0.00 3.35
173 174 0.109272 TCGTCGTTCCACATCTCTGC 60.109 55.000 0.00 0.00 0.00 4.26
174 175 0.109086 CGTCGTTCCACATCTCTGCT 60.109 55.000 0.00 0.00 0.00 4.24
175 176 1.354040 GTCGTTCCACATCTCTGCTG 58.646 55.000 0.00 0.00 0.00 4.41
176 177 0.247460 TCGTTCCACATCTCTGCTGG 59.753 55.000 0.00 0.00 0.00 4.85
177 178 1.364626 CGTTCCACATCTCTGCTGGC 61.365 60.000 0.00 0.00 0.00 4.85
178 179 1.028868 GTTCCACATCTCTGCTGGCC 61.029 60.000 0.00 0.00 0.00 5.36
179 180 1.491274 TTCCACATCTCTGCTGGCCA 61.491 55.000 4.71 4.71 0.00 5.36
180 181 1.226542 CCACATCTCTGCTGGCCAT 59.773 57.895 5.51 0.00 0.00 4.40
181 182 0.818445 CCACATCTCTGCTGGCCATC 60.818 60.000 5.51 1.26 0.00 3.51
182 183 0.180642 CACATCTCTGCTGGCCATCT 59.819 55.000 5.51 0.00 0.00 2.90
183 184 0.180642 ACATCTCTGCTGGCCATCTG 59.819 55.000 5.51 6.50 0.00 2.90
184 185 1.148723 ATCTCTGCTGGCCATCTGC 59.851 57.895 5.51 7.32 40.23 4.26
185 186 1.346479 ATCTCTGCTGGCCATCTGCT 61.346 55.000 5.51 0.00 40.43 4.24
186 187 1.820056 CTCTGCTGGCCATCTGCTG 60.820 63.158 5.51 11.14 40.43 4.41
187 188 3.518998 CTGCTGGCCATCTGCTGC 61.519 66.667 5.51 5.49 40.43 5.25
188 189 4.354162 TGCTGGCCATCTGCTGCA 62.354 61.111 5.51 8.77 43.24 4.41
189 190 3.823330 GCTGGCCATCTGCTGCAC 61.823 66.667 5.51 0.00 40.92 4.57
190 191 3.506096 CTGGCCATCTGCTGCACG 61.506 66.667 5.51 0.00 40.92 5.34
194 195 2.827190 CCATCTGCTGCACGCCAT 60.827 61.111 0.00 0.00 38.05 4.40
195 196 2.407616 CATCTGCTGCACGCCATG 59.592 61.111 0.00 0.00 38.05 3.66
204 205 4.764336 CACGCCATGCCGCACAAG 62.764 66.667 0.00 0.00 0.00 3.16
206 207 3.511595 CGCCATGCCGCACAAGAT 61.512 61.111 0.00 0.00 0.00 2.40
207 208 2.179547 CGCCATGCCGCACAAGATA 61.180 57.895 0.00 0.00 0.00 1.98
208 209 1.509644 CGCCATGCCGCACAAGATAT 61.510 55.000 0.00 0.00 0.00 1.63
209 210 0.039798 GCCATGCCGCACAAGATATG 60.040 55.000 0.00 0.00 0.00 1.78
210 211 0.039798 CCATGCCGCACAAGATATGC 60.040 55.000 0.00 0.00 39.81 3.14
216 217 3.539253 GCACAAGATATGCGCCTTG 57.461 52.632 18.70 18.70 43.84 3.61
217 218 0.593263 GCACAAGATATGCGCCTTGC 60.593 55.000 19.79 7.87 42.46 4.01
218 219 0.029834 CACAAGATATGCGCCTTGCC 59.970 55.000 19.79 0.65 45.60 4.52
219 220 1.280746 CAAGATATGCGCCTTGCCG 59.719 57.895 4.18 0.00 45.60 5.69
251 252 4.337060 CGAGCCGTCACCACACGA 62.337 66.667 0.00 0.00 42.69 4.35
252 253 2.733593 GAGCCGTCACCACACGAC 60.734 66.667 0.00 0.00 42.69 4.34
253 254 4.295119 AGCCGTCACCACACGACC 62.295 66.667 0.00 0.00 42.69 4.79
254 255 4.295119 GCCGTCACCACACGACCT 62.295 66.667 0.00 0.00 42.69 3.85
255 256 2.049433 CCGTCACCACACGACCTC 60.049 66.667 0.00 0.00 42.69 3.85
256 257 2.049433 CGTCACCACACGACCTCC 60.049 66.667 0.00 0.00 42.69 4.30
257 258 2.852180 CGTCACCACACGACCTCCA 61.852 63.158 0.00 0.00 42.69 3.86
258 259 1.300697 GTCACCACACGACCTCCAC 60.301 63.158 0.00 0.00 0.00 4.02
259 260 2.355837 CACCACACGACCTCCACG 60.356 66.667 0.00 0.00 0.00 4.94
260 261 4.295119 ACCACACGACCTCCACGC 62.295 66.667 0.00 0.00 0.00 5.34
261 262 4.293648 CCACACGACCTCCACGCA 62.294 66.667 0.00 0.00 0.00 5.24
262 263 3.036084 CACACGACCTCCACGCAC 61.036 66.667 0.00 0.00 0.00 5.34
263 264 3.533105 ACACGACCTCCACGCACA 61.533 61.111 0.00 0.00 0.00 4.57
264 265 2.279851 CACGACCTCCACGCACAA 60.280 61.111 0.00 0.00 0.00 3.33
265 266 1.885388 CACGACCTCCACGCACAAA 60.885 57.895 0.00 0.00 0.00 2.83
266 267 1.885850 ACGACCTCCACGCACAAAC 60.886 57.895 0.00 0.00 0.00 2.93
267 268 1.594293 CGACCTCCACGCACAAACT 60.594 57.895 0.00 0.00 0.00 2.66
268 269 1.157870 CGACCTCCACGCACAAACTT 61.158 55.000 0.00 0.00 0.00 2.66
269 270 1.021968 GACCTCCACGCACAAACTTT 58.978 50.000 0.00 0.00 0.00 2.66
270 271 0.738389 ACCTCCACGCACAAACTTTG 59.262 50.000 0.00 0.00 0.00 2.77
271 272 0.030638 CCTCCACGCACAAACTTTGG 59.969 55.000 6.47 0.00 34.12 3.28
272 273 0.594796 CTCCACGCACAAACTTTGGC 60.595 55.000 6.47 5.85 34.12 4.52
273 274 1.591327 CCACGCACAAACTTTGGCC 60.591 57.895 0.00 0.00 34.12 5.36
274 275 1.140589 CACGCACAAACTTTGGCCA 59.859 52.632 0.00 0.00 34.12 5.36
275 276 1.140804 ACGCACAAACTTTGGCCAC 59.859 52.632 3.88 0.00 34.12 5.01
276 277 1.140589 CGCACAAACTTTGGCCACA 59.859 52.632 3.88 0.00 34.12 4.17
277 278 0.249405 CGCACAAACTTTGGCCACAT 60.249 50.000 3.88 0.00 34.12 3.21
278 279 1.000827 CGCACAAACTTTGGCCACATA 60.001 47.619 3.88 0.00 34.12 2.29
279 280 2.403259 GCACAAACTTTGGCCACATAC 58.597 47.619 3.88 0.00 34.12 2.39
280 281 2.866065 GCACAAACTTTGGCCACATACC 60.866 50.000 3.88 0.00 34.12 2.73
281 282 2.363680 CACAAACTTTGGCCACATACCA 59.636 45.455 3.88 0.00 34.65 3.25
282 283 3.006752 CACAAACTTTGGCCACATACCAT 59.993 43.478 3.88 0.00 36.96 3.55
283 284 4.219507 CACAAACTTTGGCCACATACCATA 59.780 41.667 3.88 0.00 36.96 2.74
284 285 5.022787 ACAAACTTTGGCCACATACCATAT 58.977 37.500 3.88 0.00 36.96 1.78
285 286 6.096141 CACAAACTTTGGCCACATACCATATA 59.904 38.462 3.88 0.00 36.96 0.86
286 287 6.838612 ACAAACTTTGGCCACATACCATATAT 59.161 34.615 3.88 0.00 36.96 0.86
287 288 6.899393 AACTTTGGCCACATACCATATATG 57.101 37.500 3.88 5.68 36.96 1.78
305 306 9.092338 CCATATATGGGGAAAATGATCTTTTGA 57.908 33.333 22.31 0.00 44.31 2.69
308 309 6.879367 ATGGGGAAAATGATCTTTTGATGT 57.121 33.333 7.30 0.00 39.67 3.06
309 310 6.040209 TGGGGAAAATGATCTTTTGATGTG 57.960 37.500 7.30 0.00 39.67 3.21
310 311 5.543405 TGGGGAAAATGATCTTTTGATGTGT 59.457 36.000 7.30 0.00 39.67 3.72
311 312 6.101997 GGGGAAAATGATCTTTTGATGTGTC 58.898 40.000 7.30 1.14 39.67 3.67
312 313 6.295236 GGGGAAAATGATCTTTTGATGTGTCA 60.295 38.462 7.30 0.00 39.67 3.58
313 314 7.325694 GGGAAAATGATCTTTTGATGTGTCAT 58.674 34.615 7.30 0.00 39.67 3.06
314 315 7.820872 GGGAAAATGATCTTTTGATGTGTCATT 59.179 33.333 7.30 0.00 39.67 2.57
315 316 9.211485 GGAAAATGATCTTTTGATGTGTCATTT 57.789 29.630 7.30 5.57 39.34 2.32
329 330 5.751243 GTGTCATTTAACACTGTTGAGGT 57.249 39.130 4.57 0.00 44.90 3.85
330 331 6.131544 GTGTCATTTAACACTGTTGAGGTT 57.868 37.500 4.57 0.00 44.90 3.50
331 332 6.199393 GTGTCATTTAACACTGTTGAGGTTC 58.801 40.000 4.57 0.00 44.90 3.62
332 333 5.883115 TGTCATTTAACACTGTTGAGGTTCA 59.117 36.000 4.57 0.00 0.00 3.18
333 334 6.375736 TGTCATTTAACACTGTTGAGGTTCAA 59.624 34.615 4.57 0.00 33.32 2.69
334 335 7.094162 TGTCATTTAACACTGTTGAGGTTCAAA 60.094 33.333 4.57 0.00 38.22 2.69
335 336 7.757624 GTCATTTAACACTGTTGAGGTTCAAAA 59.242 33.333 4.57 0.00 38.22 2.44
336 337 8.474025 TCATTTAACACTGTTGAGGTTCAAAAT 58.526 29.630 4.57 0.00 38.22 1.82
337 338 8.542132 CATTTAACACTGTTGAGGTTCAAAATG 58.458 33.333 4.57 6.44 38.22 2.32
338 339 4.654091 ACACTGTTGAGGTTCAAAATGG 57.346 40.909 0.00 0.00 38.22 3.16
339 340 4.277476 ACACTGTTGAGGTTCAAAATGGA 58.723 39.130 0.00 0.00 38.22 3.41
340 341 4.895297 ACACTGTTGAGGTTCAAAATGGAT 59.105 37.500 0.00 0.00 38.22 3.41
341 342 5.221303 ACACTGTTGAGGTTCAAAATGGATG 60.221 40.000 0.00 0.00 38.22 3.51
342 343 5.009911 CACTGTTGAGGTTCAAAATGGATGA 59.990 40.000 0.00 0.00 38.22 2.92
343 344 5.598005 ACTGTTGAGGTTCAAAATGGATGAA 59.402 36.000 0.00 0.00 38.22 2.57
344 345 6.098124 ACTGTTGAGGTTCAAAATGGATGAAA 59.902 34.615 0.00 0.00 38.22 2.69
345 346 6.882656 TGTTGAGGTTCAAAATGGATGAAAA 58.117 32.000 0.00 0.00 38.22 2.29
346 347 7.507829 TGTTGAGGTTCAAAATGGATGAAAAT 58.492 30.769 0.00 0.00 38.22 1.82
347 348 7.441760 TGTTGAGGTTCAAAATGGATGAAAATG 59.558 33.333 0.00 0.00 38.22 2.32
348 349 7.065120 TGAGGTTCAAAATGGATGAAAATGT 57.935 32.000 0.00 0.00 38.44 2.71
349 350 7.153985 TGAGGTTCAAAATGGATGAAAATGTC 58.846 34.615 0.00 0.00 38.44 3.06
350 351 7.065120 AGGTTCAAAATGGATGAAAATGTCA 57.935 32.000 0.00 0.00 38.44 3.58
413 414 6.471942 TTTTAGAAAAGGAGGATTACCCCA 57.528 37.500 0.00 0.00 36.73 4.96
414 415 5.710409 TTAGAAAAGGAGGATTACCCCAG 57.290 43.478 0.00 0.00 36.73 4.45
415 416 2.242452 AGAAAAGGAGGATTACCCCAGC 59.758 50.000 0.00 0.00 36.73 4.85
416 417 0.927029 AAAGGAGGATTACCCCAGCC 59.073 55.000 0.00 0.00 36.73 4.85
417 418 0.046397 AAGGAGGATTACCCCAGCCT 59.954 55.000 0.00 0.00 35.59 4.58
418 419 0.400670 AGGAGGATTACCCCAGCCTC 60.401 60.000 0.00 0.00 44.84 4.70
419 420 0.400670 GGAGGATTACCCCAGCCTCT 60.401 60.000 0.00 0.00 44.91 3.69
420 421 0.761802 GAGGATTACCCCAGCCTCTG 59.238 60.000 0.00 0.00 42.81 3.35
421 422 0.044855 AGGATTACCCCAGCCTCTGT 59.955 55.000 0.00 0.00 36.73 3.41
422 423 1.294068 AGGATTACCCCAGCCTCTGTA 59.706 52.381 0.00 0.00 36.73 2.74
423 424 2.089925 AGGATTACCCCAGCCTCTGTAT 60.090 50.000 0.00 0.00 36.73 2.29
424 425 2.303311 GGATTACCCCAGCCTCTGTATC 59.697 54.545 0.00 0.00 0.00 2.24
428 429 1.061812 ACCCCAGCCTCTGTATCAGAT 60.062 52.381 0.00 0.00 39.92 2.90
442 443 9.986833 CTCTGTATCAGATTCGATGTTAGATAG 57.013 37.037 0.00 0.00 39.92 2.08
478 479 1.277842 TCAGCGTCAAATAGGGAAGCA 59.722 47.619 0.00 0.00 41.34 3.91
559 565 3.744559 GCAGGTTTGCTTGACCGA 58.255 55.556 0.00 0.00 46.95 4.69
649 657 5.105146 ACTTGACTTGGGCTAGATTAGACTG 60.105 44.000 0.00 0.00 33.11 3.51
669 677 1.471684 GGAAGAATGGCAGTGCAGAAG 59.528 52.381 18.61 0.00 0.00 2.85
680 688 1.002366 GTGCAGAAGTGTAGATGGCG 58.998 55.000 0.00 0.00 0.00 5.69
686 694 2.101582 AGAAGTGTAGATGGCGGTGATC 59.898 50.000 0.00 0.00 0.00 2.92
699 707 2.905075 CGGTGATCAGAGCATGGTTAA 58.095 47.619 0.00 0.00 0.00 2.01
700 708 3.470709 CGGTGATCAGAGCATGGTTAAT 58.529 45.455 0.00 0.00 0.00 1.40
701 709 3.879295 CGGTGATCAGAGCATGGTTAATT 59.121 43.478 0.00 0.00 0.00 1.40
702 710 5.056480 CGGTGATCAGAGCATGGTTAATTA 58.944 41.667 0.00 0.00 0.00 1.40
703 711 5.178252 CGGTGATCAGAGCATGGTTAATTAG 59.822 44.000 0.00 0.00 0.00 1.73
712 720 5.597806 AGCATGGTTAATTAGATCGAACGA 58.402 37.500 0.00 0.00 0.00 3.85
736 744 7.095857 CGAAGAGCATGGTTAGATTAGAATCAC 60.096 40.741 0.00 0.00 37.89 3.06
737 745 7.372260 AGAGCATGGTTAGATTAGAATCACT 57.628 36.000 0.00 0.00 37.89 3.41
738 746 7.800092 AGAGCATGGTTAGATTAGAATCACTT 58.200 34.615 0.00 0.00 37.89 3.16
764 775 1.890979 GCCAGTGCCATCGATCTGG 60.891 63.158 21.06 21.06 46.96 3.86
847 859 2.766345 GGCAATTTGGCAAAGGATGA 57.234 45.000 18.61 0.00 43.14 2.92
848 860 3.056588 GGCAATTTGGCAAAGGATGAA 57.943 42.857 18.61 0.00 43.14 2.57
850 862 4.768583 GGCAATTTGGCAAAGGATGAATA 58.231 39.130 18.61 0.00 43.14 1.75
852 864 5.824097 GGCAATTTGGCAAAGGATGAATATT 59.176 36.000 18.61 1.46 43.14 1.28
855 867 4.916983 TTGGCAAAGGATGAATATTCGG 57.083 40.909 10.80 0.00 0.00 4.30
856 868 3.897239 TGGCAAAGGATGAATATTCGGT 58.103 40.909 10.80 2.12 0.00 4.69
857 869 5.042463 TGGCAAAGGATGAATATTCGGTA 57.958 39.130 10.80 0.00 0.00 4.02
858 870 4.819630 TGGCAAAGGATGAATATTCGGTAC 59.180 41.667 10.80 3.20 0.00 3.34
896 908 2.229792 TGACTTTGACCTGCAATCACC 58.770 47.619 0.00 0.00 36.15 4.02
897 909 1.541588 GACTTTGACCTGCAATCACCC 59.458 52.381 0.00 0.00 36.15 4.61
898 910 1.133513 ACTTTGACCTGCAATCACCCA 60.134 47.619 0.00 0.00 36.15 4.51
899 911 1.270550 CTTTGACCTGCAATCACCCAC 59.729 52.381 0.00 0.00 36.15 4.61
900 912 0.478072 TTGACCTGCAATCACCCACT 59.522 50.000 0.00 0.00 0.00 4.00
901 913 1.357137 TGACCTGCAATCACCCACTA 58.643 50.000 0.00 0.00 0.00 2.74
902 914 1.702401 TGACCTGCAATCACCCACTAA 59.298 47.619 0.00 0.00 0.00 2.24
903 915 2.308570 TGACCTGCAATCACCCACTAAT 59.691 45.455 0.00 0.00 0.00 1.73
904 916 3.245229 TGACCTGCAATCACCCACTAATT 60.245 43.478 0.00 0.00 0.00 1.40
905 917 3.091545 ACCTGCAATCACCCACTAATTG 58.908 45.455 0.00 0.00 34.30 2.32
906 918 3.245229 ACCTGCAATCACCCACTAATTGA 60.245 43.478 0.00 0.00 33.22 2.57
907 919 3.956199 CCTGCAATCACCCACTAATTGAT 59.044 43.478 0.00 0.00 33.22 2.57
908 920 4.202080 CCTGCAATCACCCACTAATTGATG 60.202 45.833 0.00 0.00 33.22 3.07
909 921 4.598022 TGCAATCACCCACTAATTGATGA 58.402 39.130 0.00 0.00 33.22 2.92
910 922 5.015515 TGCAATCACCCACTAATTGATGAA 58.984 37.500 0.00 0.00 33.22 2.57
911 923 5.479724 TGCAATCACCCACTAATTGATGAAA 59.520 36.000 0.00 0.00 33.22 2.69
912 924 6.014755 TGCAATCACCCACTAATTGATGAAAA 60.015 34.615 0.00 0.00 33.22 2.29
913 925 7.043565 GCAATCACCCACTAATTGATGAAAAT 58.956 34.615 0.00 0.00 33.22 1.82
914 926 7.010738 GCAATCACCCACTAATTGATGAAAATG 59.989 37.037 0.00 0.00 33.22 2.32
915 927 7.722949 ATCACCCACTAATTGATGAAAATGT 57.277 32.000 0.00 0.00 0.00 2.71
916 928 7.156876 TCACCCACTAATTGATGAAAATGTC 57.843 36.000 0.00 0.00 0.00 3.06
917 929 6.718912 TCACCCACTAATTGATGAAAATGTCA 59.281 34.615 0.00 0.00 41.67 3.58
918 930 7.031372 CACCCACTAATTGATGAAAATGTCAG 58.969 38.462 0.00 0.00 40.43 3.51
919 931 6.721208 ACCCACTAATTGATGAAAATGTCAGT 59.279 34.615 0.00 0.00 40.43 3.41
920 932 7.888021 ACCCACTAATTGATGAAAATGTCAGTA 59.112 33.333 0.00 0.00 40.43 2.74
921 933 8.739039 CCCACTAATTGATGAAAATGTCAGTAA 58.261 33.333 0.00 0.00 40.43 2.24
922 934 9.559958 CCACTAATTGATGAAAATGTCAGTAAC 57.440 33.333 0.00 0.00 40.43 2.50
925 937 9.994432 CTAATTGATGAAAATGTCAGTAACTCC 57.006 33.333 0.00 0.00 40.43 3.85
939 951 6.476053 GTCAGTAACTCCTATAAAAGAAGCCG 59.524 42.308 0.00 0.00 0.00 5.52
951 963 0.320160 AGAAGCCGTACGTTGGGAAC 60.320 55.000 15.21 0.00 0.00 3.62
985 1009 5.424252 ACACAAGGCTAATACCAAGCTAGTA 59.576 40.000 0.00 0.00 39.97 1.82
986 1010 5.986135 CACAAGGCTAATACCAAGCTAGTAG 59.014 44.000 0.00 0.00 39.97 2.57
987 1011 5.661759 ACAAGGCTAATACCAAGCTAGTAGT 59.338 40.000 0.00 0.00 39.97 2.73
1012 1036 4.142381 TGGTATCGATAATGAGGCGATCTG 60.142 45.833 6.72 0.00 42.98 2.90
1033 1057 2.765250 TTCTTCGTCCTGGCTCGCAC 62.765 60.000 6.31 0.00 0.00 5.34
1075 1099 0.541392 TATCGCATGGTGCTTCCTGT 59.459 50.000 0.00 0.00 42.25 4.00
1086 1110 1.530013 GCTTCCTGTTGCCATGCTGT 61.530 55.000 0.00 0.00 0.00 4.40
1109 1133 0.395311 GCTAGGCCCAAAGGTAACCC 60.395 60.000 0.00 0.00 34.57 4.11
1110 1134 0.257905 CTAGGCCCAAAGGTAACCCC 59.742 60.000 0.00 0.00 34.57 4.95
1116 1140 1.677633 CAAAGGTAACCCCTGGCGG 60.678 63.158 0.00 0.00 45.47 6.13
1131 1155 3.349022 CTGGCGGACCCTGTTATTTTTA 58.651 45.455 0.00 0.00 33.59 1.52
1132 1156 3.951680 CTGGCGGACCCTGTTATTTTTAT 59.048 43.478 0.00 0.00 33.59 1.40
1133 1157 3.949113 TGGCGGACCCTGTTATTTTTATC 59.051 43.478 0.00 0.00 33.59 1.75
1141 1166 7.396339 GGACCCTGTTATTTTTATCTTTGGAGT 59.604 37.037 0.00 0.00 0.00 3.85
1142 1167 8.349568 ACCCTGTTATTTTTATCTTTGGAGTC 57.650 34.615 0.00 0.00 0.00 3.36
1158 1183 0.036105 AGTCGATGTTCATGCTGGCA 60.036 50.000 0.00 0.00 0.00 4.92
1182 1207 5.942236 ACTAGTTGTGATGTGATTTGCATCT 59.058 36.000 6.80 0.00 42.21 2.90
1228 1253 1.815817 ATTTTCCAACCTGGTGGCGC 61.816 55.000 0.00 0.00 39.03 6.53
1270 1295 0.182537 CACCTATGCCCGGGAAATCA 59.817 55.000 29.31 13.77 0.00 2.57
1304 1329 4.135153 ACTACGCTCCGCTGCCAG 62.135 66.667 0.00 0.00 0.00 4.85
1313 1338 4.748679 CGCTGCCAGAACTTGCGC 62.749 66.667 0.00 0.00 40.15 6.09
1375 1400 4.849329 GACTACGCTCCACCGCCG 62.849 72.222 0.00 0.00 0.00 6.46
1377 1402 4.430765 CTACGCTCCACCGCCGTT 62.431 66.667 0.00 0.00 36.51 4.44
1428 1453 2.401766 CGGAGCAACATCACTGCCC 61.402 63.158 0.00 0.00 40.86 5.36
1431 1456 3.443045 GCAACATCACTGCCCGGG 61.443 66.667 19.09 19.09 33.51 5.73
1432 1457 2.751436 CAACATCACTGCCCGGGG 60.751 66.667 25.28 9.31 0.00 5.73
1443 1468 3.646715 CCCGGGGTGTGACCATGT 61.647 66.667 14.71 0.00 41.02 3.21
1529 1554 0.036164 GGGGTGTGCACATGACTACA 59.964 55.000 24.69 0.00 0.00 2.74
1542 1567 0.319555 GACTACACTCTGCCGCACAA 60.320 55.000 0.00 0.00 0.00 3.33
1593 1911 0.682852 CCTACCCGACACAAGGTTCA 59.317 55.000 0.00 0.00 37.59 3.18
1620 1938 2.033602 CCCACGAACCTTCACCCC 59.966 66.667 0.00 0.00 0.00 4.95
1655 1973 3.304829 GGTAGAAGAGGAGAGATTGCCT 58.695 50.000 0.00 0.00 37.18 4.75
1777 2102 5.047377 AGTTTTCACCAAAGCAAGAGTTTCA 60.047 36.000 0.00 0.00 0.00 2.69
1807 2133 5.512473 TCCGTTCGGTTTTTACAATTCTTG 58.488 37.500 11.04 0.00 0.00 3.02
1829 2155 2.304761 TCCATTAGACGGCCAAGAAAGT 59.695 45.455 2.24 0.00 0.00 2.66
1832 2158 1.344065 TAGACGGCCAAGAAAGTGGA 58.656 50.000 2.24 0.00 41.65 4.02
1882 2208 8.186163 TGTAGTGAAATTCGAACTACACGATAT 58.814 33.333 18.56 8.27 46.94 1.63
2012 2647 3.001902 TAAGGGTCGTGGCTCGCTG 62.002 63.158 3.73 0.00 39.67 5.18
2016 2651 2.505118 GTCGTGGCTCGCTGAGAC 60.505 66.667 3.73 7.05 38.37 3.36
2018 2653 4.103103 CGTGGCTCGCTGAGACGA 62.103 66.667 9.32 0.00 41.34 4.20
2027 2662 0.670546 CGCTGAGACGATGGTGGTTT 60.671 55.000 0.00 0.00 34.06 3.27
2113 2748 3.457234 GTGCGACAACCATGATAGATCA 58.543 45.455 0.00 0.00 41.70 2.92
2121 2756 7.706607 CGACAACCATGATAGATCAGACTTTTA 59.293 37.037 0.00 0.00 40.64 1.52
2282 2928 5.746284 TGTTGTTATGTCCGGGATGAAATA 58.254 37.500 0.00 0.00 0.00 1.40
2320 2966 3.558033 GGTGTTGTTTCCCTCCTTGTAA 58.442 45.455 0.00 0.00 0.00 2.41
2321 2967 3.317149 GGTGTTGTTTCCCTCCTTGTAAC 59.683 47.826 0.00 0.00 0.00 2.50
2339 2985 3.524095 AACCATCATTGTGAACCTCCA 57.476 42.857 0.00 0.00 0.00 3.86
2342 2988 2.619849 CCATCATTGTGAACCTCCAGCT 60.620 50.000 0.00 0.00 0.00 4.24
2346 2992 2.550830 TTGTGAACCTCCAGCTCTTC 57.449 50.000 0.00 0.00 0.00 2.87
2347 2993 0.687354 TGTGAACCTCCAGCTCTTCC 59.313 55.000 0.00 0.00 0.00 3.46
2351 2997 0.610687 AACCTCCAGCTCTTCCTTCG 59.389 55.000 0.00 0.00 0.00 3.79
2365 3011 7.772757 AGCTCTTCCTTCGATTTATTCTTCATT 59.227 33.333 0.00 0.00 0.00 2.57
2366 3012 8.401709 GCTCTTCCTTCGATTTATTCTTCATTT 58.598 33.333 0.00 0.00 0.00 2.32
2486 3132 1.001378 GTTTGGCATCTCGTTTGTGCT 60.001 47.619 0.00 0.00 38.83 4.40
2568 3214 1.003116 CGACCGTCGATACCTTGGTAG 60.003 57.143 16.03 0.00 43.74 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.159984 CGTCCTCGCTTCAACAGC 58.840 61.111 0.00 0.00 46.31 4.40
13 14 4.994201 TGTGTCACGCGCGTCCTC 62.994 66.667 35.61 25.22 0.00 3.71
22 23 3.916392 GACCCGAGCCTGTGTCACG 62.916 68.421 0.00 0.00 0.00 4.35
23 24 2.048127 GACCCGAGCCTGTGTCAC 60.048 66.667 0.00 0.00 0.00 3.67
24 25 3.680786 CGACCCGAGCCTGTGTCA 61.681 66.667 0.00 0.00 0.00 3.58
25 26 3.371063 TCGACCCGAGCCTGTGTC 61.371 66.667 0.00 0.00 0.00 3.67
26 27 3.681835 GTCGACCCGAGCCTGTGT 61.682 66.667 3.51 0.00 36.23 3.72
27 28 2.890847 GATGTCGACCCGAGCCTGTG 62.891 65.000 14.12 0.00 36.23 3.66
28 29 2.680352 ATGTCGACCCGAGCCTGT 60.680 61.111 14.12 0.00 36.23 4.00
29 30 2.105128 GATGTCGACCCGAGCCTG 59.895 66.667 14.12 0.00 36.23 4.85
30 31 2.280404 TAGGATGTCGACCCGAGCCT 62.280 60.000 14.12 14.43 36.23 4.58
31 32 1.797211 CTAGGATGTCGACCCGAGCC 61.797 65.000 14.12 6.84 36.23 4.70
32 33 1.655329 CTAGGATGTCGACCCGAGC 59.345 63.158 14.12 0.00 36.23 5.03
33 34 1.655329 GCTAGGATGTCGACCCGAG 59.345 63.158 14.12 14.03 36.23 4.63
34 35 2.184830 CGCTAGGATGTCGACCCGA 61.185 63.158 14.12 3.25 0.00 5.14
35 36 2.184830 TCGCTAGGATGTCGACCCG 61.185 63.158 14.12 4.61 0.00 5.28
36 37 1.359475 GTCGCTAGGATGTCGACCC 59.641 63.158 14.12 8.00 44.62 4.46
39 40 2.158856 TCCTAAGTCGCTAGGATGTCGA 60.159 50.000 4.24 0.00 42.14 4.20
40 41 2.219458 TCCTAAGTCGCTAGGATGTCG 58.781 52.381 4.24 0.00 42.14 4.35
46 47 2.688446 TCACACATCCTAAGTCGCTAGG 59.312 50.000 0.00 0.04 40.03 3.02
47 48 3.489398 GGTCACACATCCTAAGTCGCTAG 60.489 52.174 0.00 0.00 0.00 3.42
48 49 2.426024 GGTCACACATCCTAAGTCGCTA 59.574 50.000 0.00 0.00 0.00 4.26
49 50 1.204941 GGTCACACATCCTAAGTCGCT 59.795 52.381 0.00 0.00 0.00 4.93
50 51 1.067142 TGGTCACACATCCTAAGTCGC 60.067 52.381 0.00 0.00 0.00 5.19
51 52 3.056821 TCTTGGTCACACATCCTAAGTCG 60.057 47.826 0.00 0.00 0.00 4.18
52 53 4.537135 TCTTGGTCACACATCCTAAGTC 57.463 45.455 0.00 0.00 0.00 3.01
53 54 4.974645 TTCTTGGTCACACATCCTAAGT 57.025 40.909 0.00 0.00 0.00 2.24
54 55 4.637534 CCATTCTTGGTCACACATCCTAAG 59.362 45.833 0.00 0.00 38.30 2.18
55 56 4.588899 CCATTCTTGGTCACACATCCTAA 58.411 43.478 0.00 0.00 38.30 2.69
56 57 3.622206 GCCATTCTTGGTCACACATCCTA 60.622 47.826 0.00 0.00 45.57 2.94
57 58 2.881403 GCCATTCTTGGTCACACATCCT 60.881 50.000 0.00 0.00 45.57 3.24
58 59 1.474077 GCCATTCTTGGTCACACATCC 59.526 52.381 0.00 0.00 45.57 3.51
59 60 2.095059 GTGCCATTCTTGGTCACACATC 60.095 50.000 11.90 0.00 45.57 3.06
60 61 1.888512 GTGCCATTCTTGGTCACACAT 59.111 47.619 11.90 0.00 45.57 3.21
61 62 1.317613 GTGCCATTCTTGGTCACACA 58.682 50.000 11.90 0.00 45.57 3.72
62 63 0.598065 GGTGCCATTCTTGGTCACAC 59.402 55.000 16.05 7.09 44.77 3.82
63 64 0.184692 TGGTGCCATTCTTGGTCACA 59.815 50.000 16.05 2.76 44.77 3.58
64 65 1.549203 ATGGTGCCATTCTTGGTCAC 58.451 50.000 0.00 9.59 45.57 3.67
65 66 2.722094 GTATGGTGCCATTCTTGGTCA 58.278 47.619 9.19 0.00 45.57 4.02
66 67 1.670811 CGTATGGTGCCATTCTTGGTC 59.329 52.381 9.19 0.00 45.57 4.02
67 68 1.750193 CGTATGGTGCCATTCTTGGT 58.250 50.000 9.19 0.00 45.57 3.67
68 69 0.381801 GCGTATGGTGCCATTCTTGG 59.618 55.000 9.19 0.00 46.66 3.61
69 70 3.924238 GCGTATGGTGCCATTCTTG 57.076 52.632 9.19 0.00 37.82 3.02
77 78 4.910585 CGGGAGGGCGTATGGTGC 62.911 72.222 0.00 0.00 0.00 5.01
89 90 2.361610 ATGTTTGGCAGCCGGGAG 60.362 61.111 7.03 0.00 0.00 4.30
90 91 2.676121 CATGTTTGGCAGCCGGGA 60.676 61.111 7.03 0.00 0.00 5.14
91 92 2.098426 AAACATGTTTGGCAGCCGGG 62.098 55.000 22.71 0.00 0.00 5.73
92 93 0.667184 GAAACATGTTTGGCAGCCGG 60.667 55.000 27.85 0.00 32.11 6.13
93 94 0.314935 AGAAACATGTTTGGCAGCCG 59.685 50.000 27.85 0.00 32.11 5.52
94 95 1.337167 GGAGAAACATGTTTGGCAGCC 60.337 52.381 27.85 16.14 32.11 4.85
95 96 1.615392 AGGAGAAACATGTTTGGCAGC 59.385 47.619 27.85 13.05 32.11 5.25
96 97 3.119708 GCTAGGAGAAACATGTTTGGCAG 60.120 47.826 27.85 16.56 32.11 4.85
97 98 2.819608 GCTAGGAGAAACATGTTTGGCA 59.180 45.455 27.85 7.82 32.11 4.92
98 99 2.164422 GGCTAGGAGAAACATGTTTGGC 59.836 50.000 27.85 19.22 32.11 4.52
99 100 2.420022 CGGCTAGGAGAAACATGTTTGG 59.580 50.000 27.85 7.36 32.11 3.28
100 101 3.074412 ACGGCTAGGAGAAACATGTTTG 58.926 45.455 27.85 13.32 32.11 2.93
101 102 3.418684 ACGGCTAGGAGAAACATGTTT 57.581 42.857 23.49 23.49 35.14 2.83
102 103 3.074412 CAACGGCTAGGAGAAACATGTT 58.926 45.455 4.92 4.92 0.00 2.71
103 104 2.038557 ACAACGGCTAGGAGAAACATGT 59.961 45.455 0.00 0.00 0.00 3.21
104 105 2.416547 CACAACGGCTAGGAGAAACATG 59.583 50.000 0.00 0.00 0.00 3.21
105 106 2.038557 ACACAACGGCTAGGAGAAACAT 59.961 45.455 0.00 0.00 0.00 2.71
106 107 1.414919 ACACAACGGCTAGGAGAAACA 59.585 47.619 0.00 0.00 0.00 2.83
107 108 1.798813 CACACAACGGCTAGGAGAAAC 59.201 52.381 0.00 0.00 0.00 2.78
108 109 1.876416 GCACACAACGGCTAGGAGAAA 60.876 52.381 0.00 0.00 0.00 2.52
109 110 0.320421 GCACACAACGGCTAGGAGAA 60.320 55.000 0.00 0.00 0.00 2.87
110 111 1.292223 GCACACAACGGCTAGGAGA 59.708 57.895 0.00 0.00 0.00 3.71
111 112 1.741770 GGCACACAACGGCTAGGAG 60.742 63.158 0.00 0.00 0.00 3.69
112 113 2.345991 GGCACACAACGGCTAGGA 59.654 61.111 0.00 0.00 0.00 2.94
113 114 3.118454 CGGCACACAACGGCTAGG 61.118 66.667 0.00 0.00 0.00 3.02
114 115 3.788766 GCGGCACACAACGGCTAG 61.789 66.667 0.00 0.00 0.00 3.42
131 132 3.882326 ATGGGGCCAGAGATGCGG 61.882 66.667 4.39 0.00 0.00 5.69
132 133 2.593725 CATGGGGCCAGAGATGCG 60.594 66.667 4.39 0.00 0.00 4.73
133 134 2.910994 GCATGGGGCCAGAGATGC 60.911 66.667 4.39 9.52 36.11 3.91
134 135 2.593725 CGCATGGGGCCAGAGATG 60.594 66.667 4.39 2.68 40.31 2.90
135 136 4.575973 GCGCATGGGGCCAGAGAT 62.576 66.667 12.19 0.00 40.31 2.75
145 146 3.554692 GAACGACGAGGCGCATGG 61.555 66.667 10.83 5.99 33.86 3.66
146 147 3.554692 GGAACGACGAGGCGCATG 61.555 66.667 10.83 0.00 33.86 4.06
147 148 4.063967 TGGAACGACGAGGCGCAT 62.064 61.111 10.83 0.00 33.86 4.73
150 151 2.126071 ATGTGGAACGACGAGGCG 60.126 61.111 0.00 0.00 42.39 5.52
151 152 0.802607 GAGATGTGGAACGACGAGGC 60.803 60.000 0.00 0.00 42.39 4.70
152 153 0.811915 AGAGATGTGGAACGACGAGG 59.188 55.000 0.00 0.00 42.39 4.63
153 154 1.901538 CAGAGATGTGGAACGACGAG 58.098 55.000 0.00 0.00 42.39 4.18
154 155 0.109272 GCAGAGATGTGGAACGACGA 60.109 55.000 0.00 0.00 42.39 4.20
155 156 0.109086 AGCAGAGATGTGGAACGACG 60.109 55.000 0.00 0.00 42.39 5.12
156 157 1.354040 CAGCAGAGATGTGGAACGAC 58.646 55.000 0.00 0.00 42.39 4.34
157 158 0.247460 CCAGCAGAGATGTGGAACGA 59.753 55.000 0.00 0.00 42.39 3.85
158 159 1.364626 GCCAGCAGAGATGTGGAACG 61.365 60.000 0.00 0.00 42.39 3.95
159 160 1.028868 GGCCAGCAGAGATGTGGAAC 61.029 60.000 0.00 0.00 32.60 3.62
160 161 1.300963 GGCCAGCAGAGATGTGGAA 59.699 57.895 0.00 0.00 32.60 3.53
161 162 1.276859 ATGGCCAGCAGAGATGTGGA 61.277 55.000 13.05 0.00 32.60 4.02
162 163 0.818445 GATGGCCAGCAGAGATGTGG 60.818 60.000 18.08 0.00 0.00 4.17
163 164 0.180642 AGATGGCCAGCAGAGATGTG 59.819 55.000 25.38 0.00 0.00 3.21
164 165 0.180642 CAGATGGCCAGCAGAGATGT 59.819 55.000 25.38 0.00 0.00 3.06
165 166 1.167155 GCAGATGGCCAGCAGAGATG 61.167 60.000 25.38 13.44 36.11 2.90
166 167 1.148723 GCAGATGGCCAGCAGAGAT 59.851 57.895 25.38 0.00 36.11 2.75
167 168 1.993948 AGCAGATGGCCAGCAGAGA 60.994 57.895 25.38 0.00 46.50 3.10
168 169 1.820056 CAGCAGATGGCCAGCAGAG 60.820 63.158 25.38 13.67 46.50 3.35
169 170 2.271173 CAGCAGATGGCCAGCAGA 59.729 61.111 25.38 0.00 46.50 4.26
170 171 3.518998 GCAGCAGATGGCCAGCAG 61.519 66.667 25.38 17.49 46.50 4.24
172 173 3.823330 GTGCAGCAGATGGCCAGC 61.823 66.667 14.72 14.72 46.50 4.85
173 174 3.506096 CGTGCAGCAGATGGCCAG 61.506 66.667 13.05 0.00 46.50 4.85
187 188 4.764336 CTTGTGCGGCATGGCGTG 62.764 66.667 37.28 20.63 35.06 5.34
188 189 2.867793 TATCTTGTGCGGCATGGCGT 62.868 55.000 37.28 21.26 35.06 5.68
189 190 1.509644 ATATCTTGTGCGGCATGGCG 61.510 55.000 34.70 34.70 35.06 5.69
190 191 0.039798 CATATCTTGTGCGGCATGGC 60.040 55.000 9.69 9.69 0.00 4.40
191 192 0.039798 GCATATCTTGTGCGGCATGG 60.040 55.000 5.72 0.00 32.29 3.66
192 193 3.467043 GCATATCTTGTGCGGCATG 57.533 52.632 5.72 0.00 32.29 4.06
199 200 0.029834 GGCAAGGCGCATATCTTGTG 59.970 55.000 20.40 5.54 45.17 3.33
200 201 1.439353 CGGCAAGGCGCATATCTTGT 61.439 55.000 20.40 0.00 45.17 3.16
201 202 1.280746 CGGCAAGGCGCATATCTTG 59.719 57.895 16.77 16.77 45.17 3.02
202 203 2.546494 GCGGCAAGGCGCATATCTT 61.546 57.895 31.59 0.00 45.17 2.40
203 204 2.974698 GCGGCAAGGCGCATATCT 60.975 61.111 31.59 0.00 45.17 1.98
204 205 2.974698 AGCGGCAAGGCGCATATC 60.975 61.111 35.96 12.34 45.17 1.63
205 206 3.282157 CAGCGGCAAGGCGCATAT 61.282 61.111 35.96 18.00 45.17 1.78
234 235 4.337060 TCGTGTGGTGACGGCTCG 62.337 66.667 0.00 0.00 39.88 5.03
235 236 2.733593 GTCGTGTGGTGACGGCTC 60.734 66.667 0.00 0.00 40.81 4.70
236 237 4.295119 GGTCGTGTGGTGACGGCT 62.295 66.667 0.00 0.00 43.53 5.52
237 238 4.295119 AGGTCGTGTGGTGACGGC 62.295 66.667 0.00 0.00 43.28 5.68
238 239 2.049433 GAGGTCGTGTGGTGACGG 60.049 66.667 0.00 0.00 39.88 4.79
239 240 2.049433 GGAGGTCGTGTGGTGACG 60.049 66.667 0.00 0.00 40.83 4.35
240 241 1.300697 GTGGAGGTCGTGTGGTGAC 60.301 63.158 0.00 0.00 35.60 3.67
241 242 2.852180 CGTGGAGGTCGTGTGGTGA 61.852 63.158 0.00 0.00 0.00 4.02
242 243 2.355837 CGTGGAGGTCGTGTGGTG 60.356 66.667 0.00 0.00 0.00 4.17
243 244 4.295119 GCGTGGAGGTCGTGTGGT 62.295 66.667 0.00 0.00 0.00 4.16
244 245 4.293648 TGCGTGGAGGTCGTGTGG 62.294 66.667 0.00 0.00 0.00 4.17
245 246 3.036084 GTGCGTGGAGGTCGTGTG 61.036 66.667 0.00 0.00 0.00 3.82
246 247 2.581208 TTTGTGCGTGGAGGTCGTGT 62.581 55.000 0.00 0.00 0.00 4.49
247 248 1.885388 TTTGTGCGTGGAGGTCGTG 60.885 57.895 0.00 0.00 0.00 4.35
248 249 1.885850 GTTTGTGCGTGGAGGTCGT 60.886 57.895 0.00 0.00 0.00 4.34
249 250 1.157870 AAGTTTGTGCGTGGAGGTCG 61.158 55.000 0.00 0.00 0.00 4.79
250 251 1.021968 AAAGTTTGTGCGTGGAGGTC 58.978 50.000 0.00 0.00 0.00 3.85
251 252 0.738389 CAAAGTTTGTGCGTGGAGGT 59.262 50.000 7.48 0.00 0.00 3.85
252 253 0.030638 CCAAAGTTTGTGCGTGGAGG 59.969 55.000 14.36 0.00 0.00 4.30
253 254 0.594796 GCCAAAGTTTGTGCGTGGAG 60.595 55.000 14.36 0.00 0.00 3.86
254 255 1.435515 GCCAAAGTTTGTGCGTGGA 59.564 52.632 14.36 0.00 0.00 4.02
255 256 1.591327 GGCCAAAGTTTGTGCGTGG 60.591 57.895 14.36 0.00 0.00 4.94
256 257 1.140589 TGGCCAAAGTTTGTGCGTG 59.859 52.632 0.61 0.06 0.00 5.34
257 258 1.140804 GTGGCCAAAGTTTGTGCGT 59.859 52.632 7.24 0.00 0.00 5.24
258 259 0.249405 ATGTGGCCAAAGTTTGTGCG 60.249 50.000 7.24 0.77 0.00 5.34
259 260 2.403259 GTATGTGGCCAAAGTTTGTGC 58.597 47.619 7.24 15.48 0.00 4.57
260 261 2.363680 TGGTATGTGGCCAAAGTTTGTG 59.636 45.455 7.24 7.20 32.29 3.33
261 262 2.672098 TGGTATGTGGCCAAAGTTTGT 58.328 42.857 7.24 0.00 32.29 2.83
262 263 3.959535 ATGGTATGTGGCCAAAGTTTG 57.040 42.857 7.24 8.73 39.72 2.93
263 264 6.267471 CCATATATGGTATGTGGCCAAAGTTT 59.733 38.462 21.85 0.00 43.05 2.66
264 265 5.774690 CCATATATGGTATGTGGCCAAAGTT 59.225 40.000 21.85 0.00 43.05 2.66
265 266 5.324409 CCATATATGGTATGTGGCCAAAGT 58.676 41.667 21.85 0.00 43.05 2.66
266 267 4.706476 CCCATATATGGTATGTGGCCAAAG 59.294 45.833 26.59 6.27 46.65 2.77
267 268 4.510024 CCCCATATATGGTATGTGGCCAAA 60.510 45.833 26.59 0.15 46.65 3.28
268 269 3.011144 CCCCATATATGGTATGTGGCCAA 59.989 47.826 26.59 0.00 46.65 4.52
269 270 2.580322 CCCCATATATGGTATGTGGCCA 59.420 50.000 26.59 0.00 46.65 5.36
270 271 2.849943 TCCCCATATATGGTATGTGGCC 59.150 50.000 26.59 0.00 46.65 5.36
271 272 4.584638 TTCCCCATATATGGTATGTGGC 57.415 45.455 26.59 0.00 46.65 5.01
272 273 7.181361 TCATTTTCCCCATATATGGTATGTGG 58.819 38.462 26.59 20.31 46.65 4.17
273 274 8.827832 ATCATTTTCCCCATATATGGTATGTG 57.172 34.615 26.59 17.46 46.65 3.21
274 275 8.849844 AGATCATTTTCCCCATATATGGTATGT 58.150 33.333 26.59 13.14 46.65 2.29
275 276 9.705103 AAGATCATTTTCCCCATATATGGTATG 57.295 33.333 26.59 19.80 46.65 2.39
278 279 8.873144 CAAAAGATCATTTTCCCCATATATGGT 58.127 33.333 26.59 8.05 46.65 3.55
282 283 9.659135 ACATCAAAAGATCATTTTCCCCATATA 57.341 29.630 0.00 0.00 0.00 0.86
283 284 8.426489 CACATCAAAAGATCATTTTCCCCATAT 58.574 33.333 0.00 0.00 0.00 1.78
284 285 7.399765 ACACATCAAAAGATCATTTTCCCCATA 59.600 33.333 0.00 0.00 0.00 2.74
285 286 6.214005 ACACATCAAAAGATCATTTTCCCCAT 59.786 34.615 0.00 0.00 0.00 4.00
286 287 5.543405 ACACATCAAAAGATCATTTTCCCCA 59.457 36.000 0.00 0.00 0.00 4.96
287 288 6.041423 ACACATCAAAAGATCATTTTCCCC 57.959 37.500 0.00 0.00 0.00 4.81
288 289 6.690530 TGACACATCAAAAGATCATTTTCCC 58.309 36.000 0.00 0.00 0.00 3.97
289 290 8.767478 AATGACACATCAAAAGATCATTTTCC 57.233 30.769 0.00 0.00 38.69 3.13
307 308 7.627513 TTGAACCTCAACAGTGTTAAATGACAC 60.628 37.037 8.49 0.56 39.71 3.67
308 309 5.883115 TGAACCTCAACAGTGTTAAATGACA 59.117 36.000 8.49 3.42 0.00 3.58
309 310 6.371809 TGAACCTCAACAGTGTTAAATGAC 57.628 37.500 8.49 0.86 0.00 3.06
310 311 7.397892 TTTGAACCTCAACAGTGTTAAATGA 57.602 32.000 8.49 1.47 35.89 2.57
311 312 8.542132 CATTTTGAACCTCAACAGTGTTAAATG 58.458 33.333 8.49 13.63 35.89 2.32
312 313 7.710475 CCATTTTGAACCTCAACAGTGTTAAAT 59.290 33.333 8.49 5.82 35.89 1.40
313 314 7.038659 CCATTTTGAACCTCAACAGTGTTAAA 58.961 34.615 8.49 3.60 35.89 1.52
314 315 6.378564 TCCATTTTGAACCTCAACAGTGTTAA 59.621 34.615 8.49 0.00 35.89 2.01
315 316 5.888724 TCCATTTTGAACCTCAACAGTGTTA 59.111 36.000 8.49 0.00 35.89 2.41
316 317 4.709397 TCCATTTTGAACCTCAACAGTGTT 59.291 37.500 1.64 1.64 35.89 3.32
317 318 4.277476 TCCATTTTGAACCTCAACAGTGT 58.723 39.130 0.00 0.00 35.89 3.55
318 319 4.916983 TCCATTTTGAACCTCAACAGTG 57.083 40.909 0.00 0.00 35.89 3.66
319 320 5.139727 TCATCCATTTTGAACCTCAACAGT 58.860 37.500 0.00 0.00 35.89 3.55
320 321 5.710513 TCATCCATTTTGAACCTCAACAG 57.289 39.130 0.00 0.00 35.89 3.16
321 322 6.477053 TTTCATCCATTTTGAACCTCAACA 57.523 33.333 0.00 0.00 35.89 3.33
322 323 7.442062 ACATTTTCATCCATTTTGAACCTCAAC 59.558 33.333 0.00 0.00 35.89 3.18
323 324 7.507829 ACATTTTCATCCATTTTGAACCTCAA 58.492 30.769 0.00 0.00 33.03 3.02
324 325 7.065120 ACATTTTCATCCATTTTGAACCTCA 57.935 32.000 0.00 0.00 33.03 3.86
325 326 7.153985 TGACATTTTCATCCATTTTGAACCTC 58.846 34.615 0.00 0.00 33.03 3.85
326 327 7.065120 TGACATTTTCATCCATTTTGAACCT 57.935 32.000 0.00 0.00 33.03 3.50
327 328 7.910441 ATGACATTTTCATCCATTTTGAACC 57.090 32.000 0.00 0.00 41.53 3.62
332 333 8.895737 GCCATTTATGACATTTTCATCCATTTT 58.104 29.630 0.00 0.00 41.53 1.82
333 334 8.047911 TGCCATTTATGACATTTTCATCCATTT 58.952 29.630 0.00 0.00 41.53 2.32
334 335 7.566569 TGCCATTTATGACATTTTCATCCATT 58.433 30.769 0.00 0.00 41.53 3.16
335 336 7.127012 TGCCATTTATGACATTTTCATCCAT 57.873 32.000 0.00 0.00 41.53 3.41
336 337 6.541934 TGCCATTTATGACATTTTCATCCA 57.458 33.333 0.00 0.00 41.53 3.41
337 338 7.846644 TTTGCCATTTATGACATTTTCATCC 57.153 32.000 0.00 0.00 41.53 3.51
389 390 6.865520 TGGGGTAATCCTCCTTTTCTAAAAA 58.134 36.000 0.00 0.00 32.02 1.94
390 391 6.471942 TGGGGTAATCCTCCTTTTCTAAAA 57.528 37.500 0.00 0.00 32.02 1.52
391 392 5.574948 GCTGGGGTAATCCTCCTTTTCTAAA 60.575 44.000 0.00 0.00 32.02 1.85
392 393 4.079958 GCTGGGGTAATCCTCCTTTTCTAA 60.080 45.833 0.00 0.00 32.02 2.10
393 394 3.458487 GCTGGGGTAATCCTCCTTTTCTA 59.542 47.826 0.00 0.00 32.02 2.10
394 395 2.242452 GCTGGGGTAATCCTCCTTTTCT 59.758 50.000 0.00 0.00 32.02 2.52
395 396 2.656002 GCTGGGGTAATCCTCCTTTTC 58.344 52.381 0.00 0.00 32.02 2.29
396 397 1.288037 GGCTGGGGTAATCCTCCTTTT 59.712 52.381 0.00 0.00 32.02 2.27
397 398 0.927029 GGCTGGGGTAATCCTCCTTT 59.073 55.000 0.00 0.00 32.02 3.11
398 399 0.046397 AGGCTGGGGTAATCCTCCTT 59.954 55.000 0.00 0.00 32.02 3.36
399 400 0.400670 GAGGCTGGGGTAATCCTCCT 60.401 60.000 0.00 0.00 39.27 3.69
400 401 0.400670 AGAGGCTGGGGTAATCCTCC 60.401 60.000 0.00 0.00 44.67 4.30
401 402 0.761802 CAGAGGCTGGGGTAATCCTC 59.238 60.000 0.00 0.00 44.09 3.71
402 403 0.044855 ACAGAGGCTGGGGTAATCCT 59.955 55.000 0.00 0.00 35.51 3.24
403 404 1.802553 TACAGAGGCTGGGGTAATCC 58.197 55.000 0.00 0.00 35.51 3.01
404 405 2.972713 TGATACAGAGGCTGGGGTAATC 59.027 50.000 0.00 0.00 35.51 1.75
405 406 2.975489 CTGATACAGAGGCTGGGGTAAT 59.025 50.000 0.00 0.00 35.51 1.89
406 407 2.023404 TCTGATACAGAGGCTGGGGTAA 60.023 50.000 0.00 0.00 35.39 2.85
407 408 1.573857 TCTGATACAGAGGCTGGGGTA 59.426 52.381 0.00 0.00 35.39 3.69
408 409 0.339859 TCTGATACAGAGGCTGGGGT 59.660 55.000 0.00 0.00 35.39 4.95
409 410 1.727062 ATCTGATACAGAGGCTGGGG 58.273 55.000 0.00 0.00 44.08 4.96
410 411 2.288702 CGAATCTGATACAGAGGCTGGG 60.289 54.545 0.00 0.00 44.08 4.45
411 412 2.625314 TCGAATCTGATACAGAGGCTGG 59.375 50.000 0.00 0.00 44.08 4.85
412 413 3.998099 TCGAATCTGATACAGAGGCTG 57.002 47.619 0.00 0.00 44.08 4.85
413 414 3.894427 ACATCGAATCTGATACAGAGGCT 59.106 43.478 7.50 0.00 44.08 4.58
414 415 4.250116 ACATCGAATCTGATACAGAGGC 57.750 45.455 7.50 1.75 44.08 4.70
415 416 7.208225 TCTAACATCGAATCTGATACAGAGG 57.792 40.000 7.50 0.00 44.08 3.69
416 417 9.986833 CTATCTAACATCGAATCTGATACAGAG 57.013 37.037 7.50 0.00 44.08 3.35
417 418 8.951243 CCTATCTAACATCGAATCTGATACAGA 58.049 37.037 3.95 3.95 44.99 3.41
418 419 8.951243 TCCTATCTAACATCGAATCTGATACAG 58.049 37.037 0.00 0.00 0.00 2.74
419 420 8.863872 TCCTATCTAACATCGAATCTGATACA 57.136 34.615 0.00 0.00 0.00 2.29
452 453 4.394729 TCCCTATTTGACGCTGAAAAACT 58.605 39.130 0.00 0.00 0.00 2.66
462 463 8.026607 TCTTAAATTTTGCTTCCCTATTTGACG 58.973 33.333 0.00 0.00 0.00 4.35
559 565 0.171903 GCGCATGGCTTGAACTGAAT 59.828 50.000 0.30 0.00 39.11 2.57
584 590 0.907230 TGTCCGTGATGTCCCATCCA 60.907 55.000 2.02 0.00 0.00 3.41
588 594 1.003839 GCTTGTCCGTGATGTCCCA 60.004 57.895 0.00 0.00 0.00 4.37
595 601 1.533033 TCCCTCTGCTTGTCCGTGA 60.533 57.895 0.00 0.00 0.00 4.35
599 605 1.079750 GTCGTCCCTCTGCTTGTCC 60.080 63.158 0.00 0.00 0.00 4.02
604 610 1.228894 TCCAAGTCGTCCCTCTGCT 60.229 57.895 0.00 0.00 0.00 4.24
649 657 1.471684 CTTCTGCACTGCCATTCTTCC 59.528 52.381 0.00 0.00 0.00 3.46
669 677 1.409064 TCTGATCACCGCCATCTACAC 59.591 52.381 0.00 0.00 0.00 2.90
680 688 6.291377 TCTAATTAACCATGCTCTGATCACC 58.709 40.000 0.00 0.00 0.00 4.02
686 694 6.346120 CGTTCGATCTAATTAACCATGCTCTG 60.346 42.308 0.00 0.00 0.00 3.35
699 707 4.202161 ACCATGCTCTTCGTTCGATCTAAT 60.202 41.667 0.00 0.00 0.00 1.73
700 708 3.130516 ACCATGCTCTTCGTTCGATCTAA 59.869 43.478 0.00 0.00 0.00 2.10
701 709 2.688446 ACCATGCTCTTCGTTCGATCTA 59.312 45.455 0.00 0.00 0.00 1.98
702 710 1.478510 ACCATGCTCTTCGTTCGATCT 59.521 47.619 0.00 0.00 0.00 2.75
703 711 1.927895 ACCATGCTCTTCGTTCGATC 58.072 50.000 0.00 0.00 0.00 3.69
712 720 7.800092 AGTGATTCTAATCTAACCATGCTCTT 58.200 34.615 4.45 0.00 36.39 2.85
764 775 2.035442 GGGCAACGGCTTCTCTGAC 61.035 63.158 0.00 0.00 40.87 3.51
806 817 0.320771 ATTGCAGCGTCTCGGAAGTT 60.321 50.000 0.00 0.00 0.00 2.66
858 870 6.528014 AAGTCATCTCTCAGTACGTATACG 57.472 41.667 23.24 23.24 46.33 3.06
859 871 7.851963 GTCAAAGTCATCTCTCAGTACGTATAC 59.148 40.741 0.00 0.00 0.00 1.47
860 872 7.012138 GGTCAAAGTCATCTCTCAGTACGTATA 59.988 40.741 0.00 0.00 0.00 1.47
861 873 6.183360 GGTCAAAGTCATCTCTCAGTACGTAT 60.183 42.308 0.00 0.00 0.00 3.06
862 874 5.123502 GGTCAAAGTCATCTCTCAGTACGTA 59.876 44.000 0.00 0.00 0.00 3.57
863 875 4.082679 GGTCAAAGTCATCTCTCAGTACGT 60.083 45.833 0.00 0.00 0.00 3.57
864 876 4.156922 AGGTCAAAGTCATCTCTCAGTACG 59.843 45.833 0.00 0.00 0.00 3.67
865 877 5.406649 CAGGTCAAAGTCATCTCTCAGTAC 58.593 45.833 0.00 0.00 0.00 2.73
876 888 2.229792 GGTGATTGCAGGTCAAAGTCA 58.770 47.619 5.56 0.00 38.34 3.41
896 908 9.559958 GTTACTGACATTTTCATCAATTAGTGG 57.440 33.333 0.00 0.00 32.17 4.00
899 911 9.994432 GGAGTTACTGACATTTTCATCAATTAG 57.006 33.333 0.00 0.00 32.17 1.73
900 912 9.739276 AGGAGTTACTGACATTTTCATCAATTA 57.261 29.630 0.00 0.00 32.17 1.40
901 913 8.641498 AGGAGTTACTGACATTTTCATCAATT 57.359 30.769 0.00 0.00 32.17 2.32
902 914 9.911788 ATAGGAGTTACTGACATTTTCATCAAT 57.088 29.630 0.00 0.00 32.17 2.57
911 923 9.384764 GCTTCTTTTATAGGAGTTACTGACATT 57.615 33.333 0.00 0.00 31.40 2.71
912 924 7.988028 GGCTTCTTTTATAGGAGTTACTGACAT 59.012 37.037 0.00 0.00 31.40 3.06
913 925 7.328737 GGCTTCTTTTATAGGAGTTACTGACA 58.671 38.462 0.00 0.00 31.40 3.58
914 926 6.476053 CGGCTTCTTTTATAGGAGTTACTGAC 59.524 42.308 0.00 0.00 31.40 3.51
915 927 6.154021 ACGGCTTCTTTTATAGGAGTTACTGA 59.846 38.462 0.00 0.00 31.40 3.41
916 928 6.338937 ACGGCTTCTTTTATAGGAGTTACTG 58.661 40.000 0.00 0.00 31.40 2.74
917 929 6.541934 ACGGCTTCTTTTATAGGAGTTACT 57.458 37.500 0.00 0.00 31.40 2.24
918 930 6.416161 CGTACGGCTTCTTTTATAGGAGTTAC 59.584 42.308 7.57 0.00 31.40 2.50
919 931 6.095440 ACGTACGGCTTCTTTTATAGGAGTTA 59.905 38.462 21.06 0.00 31.40 2.24
920 932 5.105595 ACGTACGGCTTCTTTTATAGGAGTT 60.106 40.000 21.06 0.00 31.40 3.01
921 933 4.400567 ACGTACGGCTTCTTTTATAGGAGT 59.599 41.667 21.06 0.00 31.40 3.85
922 934 4.929781 ACGTACGGCTTCTTTTATAGGAG 58.070 43.478 21.06 0.00 31.99 3.69
925 937 4.269363 CCCAACGTACGGCTTCTTTTATAG 59.731 45.833 21.06 0.00 0.00 1.31
931 943 0.393820 TTCCCAACGTACGGCTTCTT 59.606 50.000 21.06 0.69 0.00 2.52
933 945 0.320160 AGTTCCCAACGTACGGCTTC 60.320 55.000 21.06 3.35 36.23 3.86
935 947 1.005394 CAGTTCCCAACGTACGGCT 60.005 57.895 21.06 2.93 36.23 5.52
939 951 3.755378 TCTCTAGACAGTTCCCAACGTAC 59.245 47.826 0.00 0.00 36.23 3.67
985 1009 4.038763 TCGCCTCATTATCGATACCAAACT 59.961 41.667 4.16 0.00 0.00 2.66
986 1010 4.304110 TCGCCTCATTATCGATACCAAAC 58.696 43.478 4.16 0.00 0.00 2.93
987 1011 4.594123 TCGCCTCATTATCGATACCAAA 57.406 40.909 4.16 0.00 0.00 3.28
1012 1036 1.807573 CGAGCCAGGACGAAGAAGC 60.808 63.158 0.00 0.00 0.00 3.86
1042 1066 1.895798 TGCGATAATAGGCAGGAGGAG 59.104 52.381 0.00 0.00 33.52 3.69
1092 1116 2.401130 GGGGTTACCTTTGGGCCTA 58.599 57.895 4.53 0.00 36.80 3.93
1109 1133 0.034477 AAATAACAGGGTCCGCCAGG 60.034 55.000 0.00 0.00 36.17 4.45
1110 1134 1.834188 AAAATAACAGGGTCCGCCAG 58.166 50.000 0.00 0.00 36.17 4.85
1111 1135 2.296073 AAAAATAACAGGGTCCGCCA 57.704 45.000 0.00 0.00 36.17 5.69
1116 1140 8.349568 ACTCCAAAGATAAAAATAACAGGGTC 57.650 34.615 0.00 0.00 0.00 4.46
1131 1155 3.624861 GCATGAACATCGACTCCAAAGAT 59.375 43.478 0.00 0.00 0.00 2.40
1132 1156 3.002791 GCATGAACATCGACTCCAAAGA 58.997 45.455 0.00 0.00 0.00 2.52
1133 1157 3.005554 AGCATGAACATCGACTCCAAAG 58.994 45.455 0.00 0.00 0.00 2.77
1141 1166 0.036105 AGTGCCAGCATGAACATCGA 60.036 50.000 0.00 0.00 39.69 3.59
1142 1167 1.596260 CTAGTGCCAGCATGAACATCG 59.404 52.381 0.00 0.00 39.69 3.84
1158 1183 5.942236 AGATGCAAATCACATCACAACTAGT 59.058 36.000 6.53 0.00 45.19 2.57
1182 1207 4.343323 CACACCACCATGGGCCGA 62.343 66.667 18.09 0.00 43.37 5.54
1228 1253 1.299165 CGGCTGTATTCCTCGTCCG 60.299 63.158 0.00 0.00 0.00 4.79
1270 1295 1.747444 AGTCATGGTTCTGTCCCCTT 58.253 50.000 0.00 0.00 0.00 3.95
1375 1400 1.756561 AAGTGCCACACCCACCAAC 60.757 57.895 0.00 0.00 34.49 3.77
1377 1402 2.123939 CAAGTGCCACACCCACCA 60.124 61.111 0.00 0.00 34.49 4.17
1408 1433 1.672356 GCAGTGATGTTGCTCCGGT 60.672 57.895 0.00 0.00 38.51 5.28
1412 1437 2.401766 CCGGGCAGTGATGTTGCTC 61.402 63.158 0.00 0.00 41.27 4.26
1428 1453 0.108329 GTAGACATGGTCACACCCCG 60.108 60.000 0.00 0.00 37.50 5.73
1431 1456 0.606604 ACCGTAGACATGGTCACACC 59.393 55.000 0.00 0.00 40.20 4.16
1443 1468 2.439701 CCGGAGGCAGACCGTAGA 60.440 66.667 0.00 0.00 46.14 2.59
1485 1510 2.281761 CCTGTTGCTTCGGTGGCT 60.282 61.111 0.00 0.00 0.00 4.75
1542 1567 4.078516 GAAGTGCCGTACCCGCCT 62.079 66.667 0.00 0.00 0.00 5.52
1593 1911 0.531311 GGTTCGTGGGACGTTGTTCT 60.531 55.000 0.00 0.00 43.14 3.01
1620 1938 2.666862 TACCGTTGTTGCAGCCCG 60.667 61.111 0.00 0.18 0.00 6.13
1753 2078 5.047377 TGAAACTCTTGCTTTGGTGAAAACT 60.047 36.000 0.00 0.00 0.00 2.66
1777 2102 6.074544 TGTAAAAACCGAACGGAAAATCAT 57.925 33.333 20.14 2.35 38.96 2.45
1807 2133 2.396590 TTCTTGGCCGTCTAATGGAC 57.603 50.000 0.00 0.00 41.28 4.02
1882 2208 9.961265 CGAATCTACAAGACTTGGTTGTATATA 57.039 33.333 19.16 0.00 39.17 0.86
1949 2550 2.490217 CACCTAGACCACCGAGCG 59.510 66.667 0.00 0.00 0.00 5.03
1950 2551 2.184579 GCACCTAGACCACCGAGC 59.815 66.667 0.00 0.00 0.00 5.03
1952 2553 1.379443 ATCGCACCTAGACCACCGA 60.379 57.895 0.00 0.00 0.00 4.69
1994 2595 2.678934 AGCGAGCCACGACCCTTA 60.679 61.111 5.11 0.00 45.77 2.69
2012 2647 1.880027 AGCAAAAACCACCATCGTCTC 59.120 47.619 0.00 0.00 0.00 3.36
2016 2651 0.667184 GCCAGCAAAAACCACCATCG 60.667 55.000 0.00 0.00 0.00 3.84
2018 2653 1.367102 CGCCAGCAAAAACCACCAT 59.633 52.632 0.00 0.00 0.00 3.55
2108 2743 4.363999 CGGCTTCGATAAAAGTCTGATCT 58.636 43.478 0.00 0.00 35.61 2.75
2113 2748 2.618053 CACCGGCTTCGATAAAAGTCT 58.382 47.619 0.00 0.00 35.61 3.24
2137 2772 2.237143 CCATGTCATAGTCACACACCCT 59.763 50.000 0.00 0.00 0.00 4.34
2143 2778 2.118679 CCCTCCCATGTCATAGTCACA 58.881 52.381 0.00 0.00 0.00 3.58
2282 2928 0.261696 ACCCAAAGGCCACTGAAAGT 59.738 50.000 5.01 0.00 44.06 2.66
2288 2934 0.325203 AACAACACCCAAAGGCCACT 60.325 50.000 5.01 0.00 36.11 4.00
2320 2966 2.881403 GCTGGAGGTTCACAATGATGGT 60.881 50.000 0.00 0.00 0.00 3.55
2321 2967 1.747355 GCTGGAGGTTCACAATGATGG 59.253 52.381 0.00 0.00 0.00 3.51
2339 2985 6.644347 TGAAGAATAAATCGAAGGAAGAGCT 58.356 36.000 0.00 0.00 0.00 4.09
2365 3011 7.401060 TCCAATATGGATCTAGGGCTTTTAA 57.599 36.000 0.00 0.00 42.67 1.52
2462 3108 1.531149 CAAACGAGATGCCAAACGACT 59.469 47.619 0.00 0.00 0.00 4.18
2486 3132 2.289547 GAGAGCTAACAAACCAAACGCA 59.710 45.455 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.