Multiple sequence alignment - TraesCS3A01G008500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G008500 chr3A 100.000 1931 0 0 1466 3396 8160832 8162762 0.000000e+00 3567.0
1 TraesCS3A01G008500 chr3A 100.000 1071 0 0 1 1071 8159367 8160437 0.000000e+00 1978.0
2 TraesCS3A01G008500 chr3D 96.030 1184 40 6 1501 2678 1126848 1125666 0.000000e+00 1919.0
3 TraesCS3A01G008500 chr3D 83.676 729 86 11 1 712 1128064 1127352 0.000000e+00 656.0
4 TraesCS3A01G008500 chr3D 83.600 250 11 18 795 1018 1127307 1127062 1.240000e-49 207.0
5 TraesCS3A01G008500 chrUn 94.276 1223 55 10 1466 2678 34209153 34210370 0.000000e+00 1857.0
6 TraesCS3A01G008500 chrUn 82.699 578 52 19 1980 2541 308119602 308120147 1.430000e-128 470.0
7 TraesCS3A01G008500 chrUn 82.922 486 66 16 2754 3230 34211648 34212125 4.050000e-114 422.0
8 TraesCS3A01G008500 chrUn 89.474 285 19 9 791 1071 478259716 478259993 1.940000e-92 350.0
9 TraesCS3A01G008500 chrUn 89.412 255 20 4 2407 2654 242485396 242485142 7.070000e-82 315.0
10 TraesCS3A01G008500 chrUn 89.960 249 18 4 2407 2648 385936372 385936620 7.070000e-82 315.0
11 TraesCS3A01G008500 chrUn 84.454 238 22 7 2846 3082 34237634 34237411 1.590000e-53 220.0
12 TraesCS3A01G008500 chrUn 80.447 179 16 10 2069 2239 473781981 473781814 5.950000e-23 119.0
13 TraesCS3A01G008500 chrUn 96.154 52 2 0 2679 2730 242485076 242485025 6.040000e-13 86.1
14 TraesCS3A01G008500 chrUn 96.154 52 2 0 2679 2730 385936692 385936743 6.040000e-13 86.1
15 TraesCS3A01G008500 chrUn 96.154 52 2 0 2679 2730 396151640 396151589 6.040000e-13 86.1
16 TraesCS3A01G008500 chrUn 93.617 47 3 0 1798 1844 431347887 431347933 1.690000e-08 71.3
17 TraesCS3A01G008500 chrUn 93.617 47 3 0 1798 1844 473782068 473782022 1.690000e-08 71.3
18 TraesCS3A01G008500 chrUn 95.122 41 2 0 2690 2730 34210423 34210463 7.870000e-07 65.8
19 TraesCS3A01G008500 chr4B 90.400 250 16 5 2407 2648 420428743 420428992 4.230000e-84 322.0
20 TraesCS3A01G008500 chr4B 96.154 52 2 0 2679 2730 420429064 420429115 6.040000e-13 86.1
21 TraesCS3A01G008500 chr4B 83.099 71 8 3 3018 3086 128267188 128267120 1.020000e-05 62.1
22 TraesCS3A01G008500 chr5A 89.804 255 19 4 2407 2654 227685722 227685468 1.520000e-83 320.0
23 TraesCS3A01G008500 chr5A 89.020 255 21 4 2407 2654 227686910 227686656 3.290000e-80 309.0
24 TraesCS3A01G008500 chr5A 96.154 52 2 0 2679 2730 227686590 227686539 6.040000e-13 86.1
25 TraesCS3A01G008500 chr5A 94.231 52 3 0 2679 2730 227685402 227685351 2.810000e-11 80.5
26 TraesCS3A01G008500 chr1A 89.804 255 19 4 2407 2654 579079700 579079446 1.520000e-83 320.0
27 TraesCS3A01G008500 chr1A 96.154 52 2 0 2679 2730 579079380 579079329 6.040000e-13 86.1
28 TraesCS3A01G008500 chr1D 75.076 329 70 9 138 465 10394682 10394999 3.530000e-30 143.0
29 TraesCS3A01G008500 chr1B 72.747 466 83 24 250 679 644564406 644564863 2.140000e-22 117.0
30 TraesCS3A01G008500 chr7D 87.209 86 11 0 621 706 234555266 234555351 7.760000e-17 99.0
31 TraesCS3A01G008500 chr7D 83.784 74 11 1 153 225 46610263 46610190 6.080000e-08 69.4
32 TraesCS3A01G008500 chr6B 80.734 109 14 5 3001 3103 34074707 34074814 1.010000e-10 78.7
33 TraesCS3A01G008500 chr6B 85.333 75 7 4 3018 3090 719738709 719738781 1.310000e-09 75.0
34 TraesCS3A01G008500 chr4D 83.133 83 10 3 3021 3099 39269018 39269100 4.700000e-09 73.1
35 TraesCS3A01G008500 chr6D 84.507 71 3 7 3018 3088 435848775 435848713 2.830000e-06 63.9
36 TraesCS3A01G008500 chr4A 83.099 71 8 3 3018 3086 202587261 202587193 1.020000e-05 62.1
37 TraesCS3A01G008500 chr3B 83.824 68 7 3 3018 3085 826959456 826959393 1.020000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G008500 chr3A 8159367 8162762 3395 False 2772.500000 3567 100.000000 1 3396 2 chr3A.!!$F1 3395
1 TraesCS3A01G008500 chr3D 1125666 1128064 2398 True 927.333333 1919 87.768667 1 2678 3 chr3D.!!$R1 2677
2 TraesCS3A01G008500 chrUn 34209153 34212125 2972 False 781.600000 1857 90.773333 1466 3230 3 chrUn.!!$F4 1764
3 TraesCS3A01G008500 chrUn 308119602 308120147 545 False 470.000000 470 82.699000 1980 2541 1 chrUn.!!$F1 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 300 0.093026 CGATGAAAAGCGTGTCGGTC 59.907 55.0 0.0 0.0 36.27 4.79 F
756 773 0.320421 GGGCAGCTCGTTCACTAACA 60.320 55.0 0.0 0.0 35.16 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 1997 0.250166 CCATCATGAGCAGGATCGCA 60.250 55.0 0.09 0.0 28.16 5.10 R
2681 2745 0.110688 CAACGACATTGCCGTCACTG 60.111 55.0 0.00 0.0 39.57 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.056660 ACTGACCCTCAAATGTCCGT 58.943 50.000 0.00 0.00 0.00 4.69
95 96 8.955388 TCTATTCTCTGCATCTACATATCTCAC 58.045 37.037 0.00 0.00 0.00 3.51
115 116 8.463930 TCTCACAGTTTGAATCTTAAAACCAT 57.536 30.769 0.20 0.00 37.04 3.55
126 127 9.709495 TGAATCTTAAAACCATCCAAAAGAATG 57.291 29.630 0.00 0.00 0.00 2.67
127 128 9.927668 GAATCTTAAAACCATCCAAAAGAATGA 57.072 29.630 0.00 0.00 0.00 2.57
130 131 9.312904 TCTTAAAACCATCCAAAAGAATGATCT 57.687 29.630 0.00 0.00 37.57 2.75
133 134 8.421249 AAAACCATCCAAAAGAATGATCTACA 57.579 30.769 0.00 0.00 33.77 2.74
134 135 8.421249 AAACCATCCAAAAGAATGATCTACAA 57.579 30.769 0.00 0.00 33.77 2.41
135 136 7.396540 ACCATCCAAAAGAATGATCTACAAC 57.603 36.000 0.00 0.00 33.77 3.32
136 137 6.094048 ACCATCCAAAAGAATGATCTACAACG 59.906 38.462 0.00 0.00 33.77 4.10
137 138 6.316140 CCATCCAAAAGAATGATCTACAACGA 59.684 38.462 0.00 0.00 33.77 3.85
138 139 7.148255 CCATCCAAAAGAATGATCTACAACGAA 60.148 37.037 0.00 0.00 33.77 3.85
147 148 7.545965 AGAATGATCTACAACGAAAACCTACAG 59.454 37.037 0.00 0.00 32.88 2.74
150 151 7.833786 TGATCTACAACGAAAACCTACAGTAT 58.166 34.615 0.00 0.00 0.00 2.12
157 158 6.847421 ACGAAAACCTACAGTATCCTACTT 57.153 37.500 0.00 0.00 36.76 2.24
161 162 7.275123 CGAAAACCTACAGTATCCTACTTGTTC 59.725 40.741 0.00 0.00 36.76 3.18
163 164 7.407393 AACCTACAGTATCCTACTTGTTCTC 57.593 40.000 0.00 0.00 36.76 2.87
166 167 5.564048 ACAGTATCCTACTTGTTCTCGTC 57.436 43.478 0.00 0.00 36.76 4.20
170 171 4.778534 ATCCTACTTGTTCTCGTCGAAA 57.221 40.909 0.00 0.00 32.41 3.46
175 176 5.176958 CCTACTTGTTCTCGTCGAAAATGTT 59.823 40.000 0.00 0.00 31.69 2.71
178 179 5.236478 ACTTGTTCTCGTCGAAAATGTTCAT 59.764 36.000 0.00 0.00 32.89 2.57
233 234 1.993391 CCGCAACTCCCCCTCCTAA 60.993 63.158 0.00 0.00 0.00 2.69
257 258 3.398353 CTCCTTCGCGTCGGTCTCC 62.398 68.421 5.77 0.00 0.00 3.71
291 292 1.394917 CCTCCAGTTCGATGAAAAGCG 59.605 52.381 0.00 0.00 0.00 4.68
292 293 2.069273 CTCCAGTTCGATGAAAAGCGT 58.931 47.619 0.00 0.00 0.00 5.07
293 294 1.798223 TCCAGTTCGATGAAAAGCGTG 59.202 47.619 0.00 0.00 0.00 5.34
294 295 1.531149 CCAGTTCGATGAAAAGCGTGT 59.469 47.619 0.00 0.00 0.00 4.49
295 296 2.411547 CCAGTTCGATGAAAAGCGTGTC 60.412 50.000 0.00 0.00 0.00 3.67
297 298 0.787787 TTCGATGAAAAGCGTGTCGG 59.212 50.000 0.00 0.00 33.46 4.79
298 299 0.319211 TCGATGAAAAGCGTGTCGGT 60.319 50.000 0.00 0.00 40.00 4.69
299 300 0.093026 CGATGAAAAGCGTGTCGGTC 59.907 55.000 0.00 0.00 36.27 4.79
300 301 1.429463 GATGAAAAGCGTGTCGGTCT 58.571 50.000 0.00 0.00 36.27 3.85
301 302 1.390463 GATGAAAAGCGTGTCGGTCTC 59.610 52.381 0.00 0.00 36.27 3.36
302 303 0.599204 TGAAAAGCGTGTCGGTCTCC 60.599 55.000 0.00 0.00 36.27 3.71
323 324 1.670967 GCCCTTGCTGTTGAATGAAGC 60.671 52.381 0.00 0.00 37.46 3.86
325 326 1.334054 CTTGCTGTTGAATGAAGCGC 58.666 50.000 0.00 0.00 39.88 5.92
328 329 1.911293 GCTGTTGAATGAAGCGCCGA 61.911 55.000 2.29 0.00 0.00 5.54
336 337 2.589159 GAAGCGCCGATTCCCCTC 60.589 66.667 3.24 0.00 0.00 4.30
341 342 4.547367 GCCGATTCCCCTCCACGG 62.547 72.222 0.00 0.00 45.26 4.94
351 352 4.899239 CTCCACGGCGGCCTCATC 62.899 72.222 18.34 0.00 33.14 2.92
392 393 1.033574 GGTCTACTCCACCATCTCCG 58.966 60.000 0.00 0.00 33.63 4.63
394 395 1.101635 TCTACTCCACCATCTCCGCG 61.102 60.000 0.00 0.00 0.00 6.46
399 400 2.436646 CACCATCTCCGCGGCTTT 60.437 61.111 23.51 3.60 0.00 3.51
460 461 4.767255 CACCACCGGCTCCTGCTC 62.767 72.222 0.00 0.00 39.59 4.26
491 503 4.096003 GGCTCCGGCTGCAGGTTA 62.096 66.667 17.12 0.00 38.73 2.85
504 516 0.984230 CAGGTTACTGCTTCCCCTCA 59.016 55.000 0.00 0.00 38.01 3.86
587 604 2.107141 CGCCGGATCTCCTCCAAC 59.893 66.667 5.05 0.00 45.24 3.77
591 608 1.408822 GCCGGATCTCCTCCAACATTT 60.409 52.381 5.05 0.00 45.24 2.32
608 625 4.128580 TGGAATCGCCACTCTGGA 57.871 55.556 0.00 0.00 43.33 3.86
609 626 2.607811 TGGAATCGCCACTCTGGAT 58.392 52.632 0.00 0.00 43.33 3.41
612 629 1.071385 GGAATCGCCACTCTGGATCAT 59.929 52.381 0.00 0.00 40.96 2.45
613 630 2.141517 GAATCGCCACTCTGGATCATG 58.858 52.381 0.00 0.00 40.96 3.07
614 631 0.395686 ATCGCCACTCTGGATCATGG 59.604 55.000 0.00 0.00 40.96 3.66
619 636 3.715638 CCACTCTGGATCATGGCATAT 57.284 47.619 0.00 0.00 40.96 1.78
623 640 3.396946 ACTCTGGATCATGGCATATTGGT 59.603 43.478 0.00 0.00 0.00 3.67
630 647 5.182760 GGATCATGGCATATTGGTCTTCTTC 59.817 44.000 0.00 0.00 0.00 2.87
633 650 3.282021 TGGCATATTGGTCTTCTTCTGC 58.718 45.455 0.00 0.00 0.00 4.26
634 651 3.054139 TGGCATATTGGTCTTCTTCTGCT 60.054 43.478 0.00 0.00 0.00 4.24
643 660 1.000521 TTCTTCTGCTGGGCCATGG 60.001 57.895 6.72 7.63 0.00 3.66
667 684 4.194720 CGGACGGCGAGGGAAGAG 62.195 72.222 16.62 0.00 0.00 2.85
674 691 3.157949 CGAGGGAAGAGGGAGGCC 61.158 72.222 0.00 0.00 0.00 5.19
727 744 4.323477 CGGGTGGCTCGGGTGAAA 62.323 66.667 0.00 0.00 0.00 2.69
728 745 2.671963 GGGTGGCTCGGGTGAAAC 60.672 66.667 0.00 0.00 0.00 2.78
729 746 3.047877 GGTGGCTCGGGTGAAACG 61.048 66.667 0.00 0.00 38.12 3.60
753 770 2.571757 CGGGCAGCTCGTTCACTA 59.428 61.111 6.48 0.00 0.00 2.74
754 771 1.080093 CGGGCAGCTCGTTCACTAA 60.080 57.895 6.48 0.00 0.00 2.24
755 772 1.352156 CGGGCAGCTCGTTCACTAAC 61.352 60.000 6.48 0.00 0.00 2.34
756 773 0.320421 GGGCAGCTCGTTCACTAACA 60.320 55.000 0.00 0.00 35.16 2.41
757 774 1.508632 GGCAGCTCGTTCACTAACAA 58.491 50.000 0.00 0.00 35.16 2.83
758 775 1.871039 GGCAGCTCGTTCACTAACAAA 59.129 47.619 0.00 0.00 35.16 2.83
759 776 2.096218 GGCAGCTCGTTCACTAACAAAG 60.096 50.000 0.00 0.00 35.16 2.77
760 777 2.096218 GCAGCTCGTTCACTAACAAAGG 60.096 50.000 0.00 0.00 35.16 3.11
761 778 3.390135 CAGCTCGTTCACTAACAAAGGA 58.610 45.455 0.00 0.00 35.16 3.36
762 779 3.184581 CAGCTCGTTCACTAACAAAGGAC 59.815 47.826 0.00 0.00 35.16 3.85
763 780 2.479275 GCTCGTTCACTAACAAAGGACC 59.521 50.000 0.00 0.00 35.16 4.46
764 781 2.729882 CTCGTTCACTAACAAAGGACCG 59.270 50.000 0.00 0.00 35.16 4.79
765 782 1.796459 CGTTCACTAACAAAGGACCGG 59.204 52.381 0.00 0.00 35.16 5.28
766 783 2.804212 CGTTCACTAACAAAGGACCGGT 60.804 50.000 6.92 6.92 35.16 5.28
767 784 2.804527 GTTCACTAACAAAGGACCGGTC 59.195 50.000 27.04 27.04 35.56 4.79
768 785 2.322658 TCACTAACAAAGGACCGGTCT 58.677 47.619 32.52 16.77 0.00 3.85
769 786 2.298163 TCACTAACAAAGGACCGGTCTC 59.702 50.000 32.52 22.35 0.00 3.36
770 787 2.299297 CACTAACAAAGGACCGGTCTCT 59.701 50.000 32.52 24.13 0.00 3.10
771 788 2.970640 ACTAACAAAGGACCGGTCTCTT 59.029 45.455 32.52 27.81 0.00 2.85
772 789 3.390311 ACTAACAAAGGACCGGTCTCTTT 59.610 43.478 29.95 29.95 33.48 2.52
773 790 3.292492 AACAAAGGACCGGTCTCTTTT 57.708 42.857 31.66 25.81 32.03 2.27
774 791 2.847441 ACAAAGGACCGGTCTCTTTTC 58.153 47.619 31.66 18.89 32.03 2.29
775 792 2.438392 ACAAAGGACCGGTCTCTTTTCT 59.562 45.455 31.66 22.56 32.03 2.52
776 793 3.118000 ACAAAGGACCGGTCTCTTTTCTT 60.118 43.478 31.66 23.87 32.03 2.52
777 794 3.859061 AAGGACCGGTCTCTTTTCTTT 57.141 42.857 32.52 6.64 0.00 2.52
778 795 3.859061 AGGACCGGTCTCTTTTCTTTT 57.141 42.857 32.52 3.32 0.00 2.27
779 796 4.166246 AGGACCGGTCTCTTTTCTTTTT 57.834 40.909 32.52 2.64 0.00 1.94
807 824 5.259632 AGAAAATGGCTGTAGATGCTCTTT 58.740 37.500 0.00 0.00 0.00 2.52
848 866 4.152625 GAGGACATGCACGCACGC 62.153 66.667 0.00 0.00 0.00 5.34
850 868 4.741781 GGACATGCACGCACGCAC 62.742 66.667 0.00 0.00 46.56 5.34
861 879 4.326766 CACGCACCACAAAGGCCG 62.327 66.667 0.00 0.00 43.14 6.13
871 889 4.548513 AAAGGCCGCAAACCCCCA 62.549 61.111 0.00 0.00 0.00 4.96
895 913 1.051008 AAAAAGCCCAGAAGCCCAAG 58.949 50.000 0.00 0.00 0.00 3.61
896 914 1.475169 AAAAGCCCAGAAGCCCAAGC 61.475 55.000 0.00 0.00 40.32 4.01
897 915 3.893961 AAGCCCAGAAGCCCAAGCC 62.894 63.158 0.00 0.00 41.25 4.35
936 976 2.869192 CCCCACAAAACAAAATCAACCG 59.131 45.455 0.00 0.00 0.00 4.44
938 978 4.376146 CCCACAAAACAAAATCAACCGAT 58.624 39.130 0.00 0.00 0.00 4.18
946 986 2.256117 AAATCAACCGATCCGATCCC 57.744 50.000 2.69 0.00 0.00 3.85
965 1005 2.499515 CCTCCATAAACCCTAACCCCT 58.500 52.381 0.00 0.00 0.00 4.79
969 1009 2.442126 CCATAAACCCTAACCCCTCTCC 59.558 54.545 0.00 0.00 0.00 3.71
971 1011 0.551871 AAACCCTAACCCCTCTCCCC 60.552 60.000 0.00 0.00 0.00 4.81
972 1012 1.470448 AACCCTAACCCCTCTCCCCT 61.470 60.000 0.00 0.00 0.00 4.79
974 1014 1.074395 CCTAACCCCTCTCCCCTCC 60.074 68.421 0.00 0.00 0.00 4.30
975 1015 1.604592 CCTAACCCCTCTCCCCTCCT 61.605 65.000 0.00 0.00 0.00 3.69
977 1017 1.600763 TAACCCCTCTCCCCTCCTCC 61.601 65.000 0.00 0.00 0.00 4.30
978 1018 3.039526 CCCCTCTCCCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
988 1028 4.179599 CTCCTCCTCCCCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
1023 1063 4.899239 CTCCTCGCCGCCATCACC 62.899 72.222 0.00 0.00 0.00 4.02
1030 1070 3.790437 CCGCCATCACCAGCTCCT 61.790 66.667 0.00 0.00 0.00 3.69
1031 1071 2.202987 CGCCATCACCAGCTCCTC 60.203 66.667 0.00 0.00 0.00 3.71
1032 1072 2.729479 CGCCATCACCAGCTCCTCT 61.729 63.158 0.00 0.00 0.00 3.69
1033 1073 1.145819 GCCATCACCAGCTCCTCTC 59.854 63.158 0.00 0.00 0.00 3.20
1034 1074 1.828768 CCATCACCAGCTCCTCTCC 59.171 63.158 0.00 0.00 0.00 3.71
1035 1075 1.440893 CATCACCAGCTCCTCTCCG 59.559 63.158 0.00 0.00 0.00 4.63
1036 1076 1.760086 ATCACCAGCTCCTCTCCGG 60.760 63.158 0.00 0.00 0.00 5.14
1037 1077 4.154347 CACCAGCTCCTCTCCGGC 62.154 72.222 0.00 0.00 0.00 6.13
1063 1103 4.692475 CCAACCACCCCGTCGTCC 62.692 72.222 0.00 0.00 0.00 4.79
1064 1104 3.622826 CAACCACCCCGTCGTCCT 61.623 66.667 0.00 0.00 0.00 3.85
1065 1105 3.308705 AACCACCCCGTCGTCCTC 61.309 66.667 0.00 0.00 0.00 3.71
1066 1106 4.608774 ACCACCCCGTCGTCCTCA 62.609 66.667 0.00 0.00 0.00 3.86
1067 1107 4.065281 CCACCCCGTCGTCCTCAC 62.065 72.222 0.00 0.00 0.00 3.51
1068 1108 4.065281 CACCCCGTCGTCCTCACC 62.065 72.222 0.00 0.00 0.00 4.02
1926 1966 4.498520 CATGGCCGTCGACGAGCT 62.499 66.667 37.65 20.38 43.02 4.09
2045 2085 0.388263 GTCGAGGAACGTTGAGGACC 60.388 60.000 5.00 0.00 43.13 4.46
2267 2317 0.038166 GGACCAGCATTTCTCCCACA 59.962 55.000 0.00 0.00 0.00 4.17
2371 2421 1.339151 GGTCCAATCCTCGACTTGCTT 60.339 52.381 0.00 0.00 0.00 3.91
2423 2473 8.135529 AGATTAAACTGTCTGTTTACTTTTGGC 58.864 33.333 12.97 0.00 46.91 4.52
2442 2492 5.939764 TGGCACTACTAGTTCTGATGATT 57.060 39.130 0.00 0.00 0.00 2.57
2542 2602 4.155826 TCCTTCTGTTGGCATTTTACATCG 59.844 41.667 0.00 0.00 0.00 3.84
2565 2627 8.683550 TCGTGTGTATCACTATCAGTTAAAAG 57.316 34.615 1.72 0.00 44.16 2.27
2678 2742 5.476599 CCATTCCAGGTGAAAATACTGAACA 59.523 40.000 0.00 0.00 36.33 3.18
2679 2743 6.153340 CCATTCCAGGTGAAAATACTGAACAT 59.847 38.462 0.00 0.00 36.33 2.71
2680 2744 7.309990 CCATTCCAGGTGAAAATACTGAACATT 60.310 37.037 0.00 0.00 36.33 2.71
2681 2745 6.817765 TCCAGGTGAAAATACTGAACATTC 57.182 37.500 0.00 0.00 34.21 2.67
2682 2746 6.303054 TCCAGGTGAAAATACTGAACATTCA 58.697 36.000 0.00 0.00 34.21 2.57
2691 2755 3.696306 TGAACATTCAGTGACGGCA 57.304 47.368 0.00 0.00 32.50 5.69
2730 2835 5.473931 AGTATTCCATGCTTATACTCTGCG 58.526 41.667 6.73 0.00 31.23 5.18
2731 2836 3.819564 TTCCATGCTTATACTCTGCGT 57.180 42.857 0.00 0.00 0.00 5.24
2732 2837 4.929819 TTCCATGCTTATACTCTGCGTA 57.070 40.909 0.00 0.00 0.00 4.42
2733 2838 4.238761 TCCATGCTTATACTCTGCGTAC 57.761 45.455 0.00 0.00 0.00 3.67
2734 2839 3.005472 TCCATGCTTATACTCTGCGTACC 59.995 47.826 0.00 0.00 0.00 3.34
2735 2840 3.243737 CCATGCTTATACTCTGCGTACCA 60.244 47.826 0.00 0.00 0.00 3.25
2736 2841 4.560128 CATGCTTATACTCTGCGTACCAT 58.440 43.478 0.00 0.00 0.00 3.55
2738 2843 3.889538 TGCTTATACTCTGCGTACCATCT 59.110 43.478 0.00 0.00 0.00 2.90
2742 2847 6.072618 GCTTATACTCTGCGTACCATCTTCTA 60.073 42.308 0.00 0.00 0.00 2.10
2743 2848 7.521748 GCTTATACTCTGCGTACCATCTTCTAA 60.522 40.741 0.00 0.00 0.00 2.10
2744 2849 6.710597 ATACTCTGCGTACCATCTTCTAAA 57.289 37.500 0.00 0.00 0.00 1.85
2746 2851 5.978814 ACTCTGCGTACCATCTTCTAAATT 58.021 37.500 0.00 0.00 0.00 1.82
2747 2852 7.108841 ACTCTGCGTACCATCTTCTAAATTA 57.891 36.000 0.00 0.00 0.00 1.40
2748 2853 6.979238 ACTCTGCGTACCATCTTCTAAATTAC 59.021 38.462 0.00 0.00 0.00 1.89
2749 2854 5.975344 TCTGCGTACCATCTTCTAAATTACG 59.025 40.000 0.00 0.00 35.19 3.18
2751 2856 4.084693 GCGTACCATCTTCTAAATTACGCC 60.085 45.833 11.17 0.00 46.53 5.68
2759 4025 6.677781 TCTTCTAAATTACGCCAATGGAAG 57.322 37.500 2.05 0.00 33.97 3.46
2762 4028 4.887071 TCTAAATTACGCCAATGGAAGCAT 59.113 37.500 2.05 0.00 0.00 3.79
2798 4064 3.722780 CGTACCATCTTCTAAACTACGCG 59.277 47.826 3.53 3.53 0.00 6.01
2799 4065 4.494690 CGTACCATCTTCTAAACTACGCGA 60.495 45.833 15.93 0.00 0.00 5.87
2801 4067 4.421948 ACCATCTTCTAAACTACGCGAAG 58.578 43.478 15.93 2.86 35.40 3.79
2846 4112 4.630894 TTCAGAAAATGTTGCAGAACGT 57.369 36.364 0.00 0.00 34.49 3.99
2864 4130 3.250744 ACGTCATGTTCTCCGTACATTG 58.749 45.455 0.00 0.00 34.11 2.82
2865 4131 3.250744 CGTCATGTTCTCCGTACATTGT 58.749 45.455 0.00 0.00 34.11 2.71
2868 4134 5.333798 CGTCATGTTCTCCGTACATTGTTTT 60.334 40.000 0.00 0.00 34.11 2.43
2871 4137 5.176407 TGTTCTCCGTACATTGTTTTTGG 57.824 39.130 0.00 0.00 0.00 3.28
2914 4180 8.600449 TTAAATGTTACAAGCATCTTTTTGGG 57.400 30.769 0.00 0.00 0.00 4.12
2920 4186 3.325716 ACAAGCATCTTTTTGGGAATGCT 59.674 39.130 3.00 3.00 45.91 3.79
2926 4192 6.070653 AGCATCTTTTTGGGAATGCTATCAAA 60.071 34.615 6.90 0.00 42.69 2.69
2968 4234 3.137533 ACAATTTTTCCCCAATGCGTTG 58.862 40.909 11.90 11.90 35.05 4.10
2970 4236 2.990066 TTTTTCCCCAATGCGTTGTT 57.010 40.000 17.19 0.00 33.36 2.83
2974 4240 2.231215 TCCCCAATGCGTTGTTTTTG 57.769 45.000 17.19 1.69 33.36 2.44
2978 4244 3.871594 CCCCAATGCGTTGTTTTTGTTTA 59.128 39.130 17.19 0.00 33.36 2.01
2979 4245 4.332819 CCCCAATGCGTTGTTTTTGTTTAA 59.667 37.500 17.19 0.00 33.36 1.52
2980 4246 5.163754 CCCCAATGCGTTGTTTTTGTTTAAA 60.164 36.000 17.19 0.00 33.36 1.52
2981 4247 6.314784 CCCAATGCGTTGTTTTTGTTTAAAA 58.685 32.000 17.19 0.00 33.36 1.52
3108 4380 8.581253 AAACAGAGAAGGGAAACTAATTATGG 57.419 34.615 0.00 0.00 0.00 2.74
3109 4381 7.510675 ACAGAGAAGGGAAACTAATTATGGA 57.489 36.000 0.00 0.00 0.00 3.41
3110 4382 7.339482 ACAGAGAAGGGAAACTAATTATGGAC 58.661 38.462 0.00 0.00 0.00 4.02
3111 4383 6.480320 CAGAGAAGGGAAACTAATTATGGACG 59.520 42.308 0.00 0.00 0.00 4.79
3112 4384 6.383147 AGAGAAGGGAAACTAATTATGGACGA 59.617 38.462 0.00 0.00 0.00 4.20
3113 4385 7.071321 AGAGAAGGGAAACTAATTATGGACGAT 59.929 37.037 0.00 0.00 0.00 3.73
3114 4386 8.258850 AGAAGGGAAACTAATTATGGACGATA 57.741 34.615 0.00 0.00 0.00 2.92
3117 4389 7.668492 AGGGAAACTAATTATGGACGATAGAC 58.332 38.462 0.00 0.00 41.38 2.59
3119 4391 7.599245 GGGAAACTAATTATGGACGATAGACAG 59.401 40.741 0.00 0.00 41.38 3.51
3120 4392 7.116519 GGAAACTAATTATGGACGATAGACAGC 59.883 40.741 0.00 0.00 41.38 4.40
3123 4395 4.792521 ATTATGGACGATAGACAGCTCC 57.207 45.455 0.00 0.00 41.38 4.70
3124 4396 2.373335 ATGGACGATAGACAGCTCCT 57.627 50.000 0.00 0.00 41.38 3.69
3125 4397 1.681538 TGGACGATAGACAGCTCCTC 58.318 55.000 0.00 0.00 41.38 3.71
3127 4399 0.955905 GACGATAGACAGCTCCTCCC 59.044 60.000 0.00 0.00 41.38 4.30
3128 4400 0.259065 ACGATAGACAGCTCCTCCCA 59.741 55.000 0.00 0.00 41.38 4.37
3130 4402 2.108425 ACGATAGACAGCTCCTCCCATA 59.892 50.000 0.00 0.00 41.38 2.74
3131 4403 3.245443 ACGATAGACAGCTCCTCCCATAT 60.245 47.826 0.00 0.00 41.38 1.78
3132 4404 3.766591 CGATAGACAGCTCCTCCCATATT 59.233 47.826 0.00 0.00 39.76 1.28
3133 4405 4.381398 CGATAGACAGCTCCTCCCATATTG 60.381 50.000 0.00 0.00 39.76 1.90
3134 4406 1.419387 AGACAGCTCCTCCCATATTGC 59.581 52.381 0.00 0.00 0.00 3.56
3135 4407 0.107456 ACAGCTCCTCCCATATTGCG 59.893 55.000 0.00 0.00 0.00 4.85
3136 4408 0.604780 CAGCTCCTCCCATATTGCGG 60.605 60.000 0.00 0.00 0.00 5.69
3137 4409 1.968540 GCTCCTCCCATATTGCGGC 60.969 63.158 0.00 0.00 0.00 6.53
3148 4420 2.242047 TATTGCGGCCGTGCTAAATA 57.758 45.000 28.70 18.41 35.36 1.40
3150 4422 1.384525 TTGCGGCCGTGCTAAATATT 58.615 45.000 28.70 0.00 35.36 1.28
3152 4424 0.660300 GCGGCCGTGCTAAATATTGC 60.660 55.000 28.70 0.00 0.00 3.56
3153 4425 0.384230 CGGCCGTGCTAAATATTGCG 60.384 55.000 19.50 0.00 0.00 4.85
3155 4427 0.660300 GCCGTGCTAAATATTGCGCC 60.660 55.000 4.18 0.00 36.46 6.53
3161 4433 2.943690 TGCTAAATATTGCGCCCGTTTA 59.056 40.909 4.18 4.67 0.00 2.01
3162 4434 3.242804 TGCTAAATATTGCGCCCGTTTAC 60.243 43.478 4.18 2.18 0.00 2.01
3165 4437 2.319136 ATATTGCGCCCGTTTACTGA 57.681 45.000 4.18 0.00 0.00 3.41
3180 4452 8.273557 CCCGTTTACTGATAAATGTTTCTATCG 58.726 37.037 0.00 0.00 36.08 2.92
3181 4453 9.027129 CCGTTTACTGATAAATGTTTCTATCGA 57.973 33.333 0.00 0.00 36.08 3.59
3196 4468 7.272515 TGTTTCTATCGAAAAATGAAAATCGCC 59.727 33.333 0.00 0.00 40.57 5.54
3230 4503 2.910688 TGTGGGCCGAAATCTATCTC 57.089 50.000 0.00 0.00 0.00 2.75
3231 4504 1.068588 TGTGGGCCGAAATCTATCTCG 59.931 52.381 0.00 0.00 34.83 4.04
3240 4513 5.277601 CGAAATCTATCTCGGTCTCTCTC 57.722 47.826 0.00 0.00 0.00 3.20
3241 4514 4.994852 CGAAATCTATCTCGGTCTCTCTCT 59.005 45.833 0.00 0.00 0.00 3.10
3242 4515 5.120208 CGAAATCTATCTCGGTCTCTCTCTC 59.880 48.000 0.00 0.00 0.00 3.20
3243 4516 5.825593 AATCTATCTCGGTCTCTCTCTCT 57.174 43.478 0.00 0.00 0.00 3.10
3244 4517 5.825593 ATCTATCTCGGTCTCTCTCTCTT 57.174 43.478 0.00 0.00 0.00 2.85
3245 4518 5.209818 TCTATCTCGGTCTCTCTCTCTTC 57.790 47.826 0.00 0.00 0.00 2.87
3246 4519 4.899457 TCTATCTCGGTCTCTCTCTCTTCT 59.101 45.833 0.00 0.00 0.00 2.85
3247 4520 3.536956 TCTCGGTCTCTCTCTCTTCTC 57.463 52.381 0.00 0.00 0.00 2.87
3248 4521 2.169769 TCTCGGTCTCTCTCTCTTCTCC 59.830 54.545 0.00 0.00 0.00 3.71
3249 4522 2.170607 CTCGGTCTCTCTCTCTTCTCCT 59.829 54.545 0.00 0.00 0.00 3.69
3250 4523 2.574369 TCGGTCTCTCTCTCTTCTCCTT 59.426 50.000 0.00 0.00 0.00 3.36
3251 4524 3.775866 TCGGTCTCTCTCTCTTCTCCTTA 59.224 47.826 0.00 0.00 0.00 2.69
3252 4525 4.225492 TCGGTCTCTCTCTCTTCTCCTTAA 59.775 45.833 0.00 0.00 0.00 1.85
3253 4526 4.944930 CGGTCTCTCTCTCTTCTCCTTAAA 59.055 45.833 0.00 0.00 0.00 1.52
3254 4527 5.416326 CGGTCTCTCTCTCTTCTCCTTAAAA 59.584 44.000 0.00 0.00 0.00 1.52
3255 4528 6.071840 CGGTCTCTCTCTCTTCTCCTTAAAAA 60.072 42.308 0.00 0.00 0.00 1.94
3303 4576 2.927553 AAAACTCATCTTGCGATGGC 57.072 45.000 0.00 0.00 45.66 4.40
3326 4599 4.867599 CCGGCGGCGACCTTCTAC 62.868 72.222 34.49 0.00 0.00 2.59
3327 4600 3.823330 CGGCGGCGACCTTCTACT 61.823 66.667 29.19 0.00 0.00 2.57
3328 4601 2.202756 GGCGGCGACCTTCTACTG 60.203 66.667 12.98 0.00 0.00 2.74
3329 4602 2.707849 GGCGGCGACCTTCTACTGA 61.708 63.158 12.98 0.00 0.00 3.41
3330 4603 1.516603 GCGGCGACCTTCTACTGAC 60.517 63.158 12.98 0.00 0.00 3.51
3331 4604 1.226323 CGGCGACCTTCTACTGACG 60.226 63.158 0.00 0.00 0.00 4.35
3332 4605 1.139095 GGCGACCTTCTACTGACGG 59.861 63.158 0.00 0.00 37.60 4.79
3333 4606 1.516603 GCGACCTTCTACTGACGGC 60.517 63.158 0.00 0.00 35.26 5.68
3334 4607 1.226323 CGACCTTCTACTGACGGCG 60.226 63.158 4.80 4.80 35.26 6.46
3335 4608 1.642037 CGACCTTCTACTGACGGCGA 61.642 60.000 16.62 0.00 35.26 5.54
3336 4609 0.739561 GACCTTCTACTGACGGCGAT 59.260 55.000 16.62 0.00 35.26 4.58
3337 4610 0.456221 ACCTTCTACTGACGGCGATG 59.544 55.000 16.62 5.38 35.26 3.84
3338 4611 0.249073 CCTTCTACTGACGGCGATGG 60.249 60.000 16.62 4.97 0.00 3.51
3339 4612 0.872021 CTTCTACTGACGGCGATGGC 60.872 60.000 16.62 0.00 38.90 4.40
3340 4613 1.320344 TTCTACTGACGGCGATGGCT 61.320 55.000 16.62 0.00 39.81 4.75
3348 4621 4.479993 GGCGATGGCTGGCTGACT 62.480 66.667 2.00 0.00 39.81 3.41
3349 4622 2.894387 GCGATGGCTGGCTGACTC 60.894 66.667 2.00 0.00 35.83 3.36
3350 4623 2.898738 CGATGGCTGGCTGACTCT 59.101 61.111 2.00 0.00 0.00 3.24
3351 4624 1.521010 CGATGGCTGGCTGACTCTG 60.521 63.158 2.00 0.00 0.00 3.35
3352 4625 1.601171 GATGGCTGGCTGACTCTGT 59.399 57.895 2.00 0.00 0.00 3.41
3353 4626 0.743701 GATGGCTGGCTGACTCTGTG 60.744 60.000 2.00 0.00 0.00 3.66
3354 4627 1.196766 ATGGCTGGCTGACTCTGTGA 61.197 55.000 2.00 0.00 0.00 3.58
3355 4628 1.375268 GGCTGGCTGACTCTGTGAC 60.375 63.158 0.00 0.00 0.00 3.67
3356 4629 1.735920 GCTGGCTGACTCTGTGACG 60.736 63.158 0.00 0.00 0.00 4.35
3357 4630 1.735920 CTGGCTGACTCTGTGACGC 60.736 63.158 0.00 0.00 0.00 5.19
3358 4631 2.340078 GGCTGACTCTGTGACGCA 59.660 61.111 0.00 0.00 0.00 5.24
3359 4632 1.735920 GGCTGACTCTGTGACGCAG 60.736 63.158 9.85 9.85 46.34 5.18
3360 4633 2.378858 GCTGACTCTGTGACGCAGC 61.379 63.158 11.29 0.00 44.66 5.25
3361 4634 1.288439 CTGACTCTGTGACGCAGCT 59.712 57.895 11.29 0.00 44.66 4.24
3362 4635 0.732196 CTGACTCTGTGACGCAGCTC 60.732 60.000 11.29 8.52 44.66 4.09
3363 4636 1.445238 GACTCTGTGACGCAGCTCC 60.445 63.158 11.29 0.00 44.66 4.70
3364 4637 2.125753 CTCTGTGACGCAGCTCCC 60.126 66.667 11.29 0.00 44.66 4.30
3365 4638 3.655810 CTCTGTGACGCAGCTCCCC 62.656 68.421 11.29 0.00 44.66 4.81
3366 4639 4.767255 CTGTGACGCAGCTCCCCC 62.767 72.222 2.48 0.00 38.52 5.40
3374 4647 4.436998 CAGCTCCCCCACGACGTC 62.437 72.222 5.18 5.18 0.00 4.34
3383 4656 4.700365 CACGACGTCGCTGCTCCA 62.700 66.667 35.92 0.00 44.43 3.86
3384 4657 3.749064 ACGACGTCGCTGCTCCAT 61.749 61.111 35.92 12.80 44.43 3.41
3385 4658 2.404186 ACGACGTCGCTGCTCCATA 61.404 57.895 35.92 0.00 44.43 2.74
3386 4659 1.008424 CGACGTCGCTGCTCCATAT 60.008 57.895 26.59 0.00 0.00 1.78
3387 4660 0.999228 CGACGTCGCTGCTCCATATC 60.999 60.000 26.59 0.00 0.00 1.63
3388 4661 0.664767 GACGTCGCTGCTCCATATCC 60.665 60.000 0.00 0.00 0.00 2.59
3389 4662 1.373497 CGTCGCTGCTCCATATCCC 60.373 63.158 0.00 0.00 0.00 3.85
3390 4663 1.748403 GTCGCTGCTCCATATCCCA 59.252 57.895 0.00 0.00 0.00 4.37
3391 4664 0.320247 GTCGCTGCTCCATATCCCAG 60.320 60.000 0.00 0.00 0.00 4.45
3392 4665 0.760567 TCGCTGCTCCATATCCCAGT 60.761 55.000 0.00 0.00 0.00 4.00
3393 4666 0.602106 CGCTGCTCCATATCCCAGTG 60.602 60.000 0.00 0.00 0.00 3.66
3394 4667 0.761187 GCTGCTCCATATCCCAGTGA 59.239 55.000 0.00 0.00 0.00 3.41
3395 4668 1.542108 GCTGCTCCATATCCCAGTGAC 60.542 57.143 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.265056 GGTTGCCCCGGTCAGTGT 62.265 66.667 0.00 0.00 0.00 3.55
56 57 5.449725 GCAGAGAATAGATTTTGAGGGTTGC 60.450 44.000 0.00 0.00 0.00 4.17
57 58 5.649395 TGCAGAGAATAGATTTTGAGGGTTG 59.351 40.000 0.00 0.00 0.00 3.77
70 71 8.738106 TGTGAGATATGTAGATGCAGAGAATAG 58.262 37.037 0.00 0.00 0.00 1.73
95 96 8.885494 TTTGGATGGTTTTAAGATTCAAACTG 57.115 30.769 3.23 0.00 34.00 3.16
115 116 7.737972 TTTCGTTGTAGATCATTCTTTTGGA 57.262 32.000 0.00 0.00 33.17 3.53
125 126 6.092955 ACTGTAGGTTTTCGTTGTAGATCA 57.907 37.500 0.00 0.00 0.00 2.92
126 127 7.434602 GGATACTGTAGGTTTTCGTTGTAGATC 59.565 40.741 0.00 0.00 0.00 2.75
127 128 7.263496 GGATACTGTAGGTTTTCGTTGTAGAT 58.737 38.462 0.00 0.00 0.00 1.98
128 129 6.624423 GGATACTGTAGGTTTTCGTTGTAGA 58.376 40.000 0.00 0.00 0.00 2.59
129 130 6.882458 GGATACTGTAGGTTTTCGTTGTAG 57.118 41.667 0.00 0.00 0.00 2.74
147 148 4.871993 TCGACGAGAACAAGTAGGATAC 57.128 45.455 0.00 0.00 43.47 2.24
150 151 4.572985 TTTTCGACGAGAACAAGTAGGA 57.427 40.909 0.00 0.00 38.83 2.94
157 158 4.747605 TCATGAACATTTTCGACGAGAACA 59.252 37.500 2.58 0.00 38.83 3.18
161 162 5.276584 GGAGATCATGAACATTTTCGACGAG 60.277 44.000 0.00 0.00 34.04 4.18
163 164 4.548916 CGGAGATCATGAACATTTTCGACG 60.549 45.833 0.00 0.00 34.04 5.12
166 167 4.581493 CACGGAGATCATGAACATTTTCG 58.419 43.478 0.00 0.00 34.04 3.46
170 171 2.292267 GGCACGGAGATCATGAACATT 58.708 47.619 0.00 0.00 0.00 2.71
196 197 3.697439 CTGCCACCCATGTACCCGG 62.697 68.421 0.00 0.00 0.00 5.73
223 224 1.130678 GGAGCCAGATTAGGAGGGGG 61.131 65.000 0.00 0.00 0.00 5.40
224 225 0.104725 AGGAGCCAGATTAGGAGGGG 60.105 60.000 0.00 0.00 0.00 4.79
233 234 2.496817 GACGCGAAGGAGCCAGAT 59.503 61.111 15.93 0.00 0.00 2.90
253 254 3.347590 TGGAGGAGGAGGCGGAGA 61.348 66.667 0.00 0.00 0.00 3.71
257 258 3.151022 GAGGTGGAGGAGGAGGCG 61.151 72.222 0.00 0.00 0.00 5.52
265 266 0.176680 CATCGAACTGGAGGTGGAGG 59.823 60.000 0.00 0.00 0.00 4.30
303 304 1.670967 GCTTCATTCAACAGCAAGGGC 60.671 52.381 0.00 0.00 41.61 5.19
306 307 1.334054 GCGCTTCATTCAACAGCAAG 58.666 50.000 0.00 0.00 32.71 4.01
310 311 0.729116 ATCGGCGCTTCATTCAACAG 59.271 50.000 7.64 0.00 0.00 3.16
323 324 4.891727 CGTGGAGGGGAATCGGCG 62.892 72.222 0.00 0.00 0.00 6.46
325 326 4.547367 GCCGTGGAGGGGAATCGG 62.547 72.222 0.00 0.00 43.37 4.18
336 337 4.473520 AAGATGAGGCCGCCGTGG 62.474 66.667 3.22 0.00 42.50 4.94
341 342 1.958205 CGATCCAAGATGAGGCCGC 60.958 63.158 0.00 0.00 0.00 6.53
351 352 3.648009 GCCATCTTAGAGTCGATCCAAG 58.352 50.000 0.00 0.00 0.00 3.61
399 400 2.606519 AGAGTACAAGGCCGCCCA 60.607 61.111 5.55 0.00 0.00 5.36
466 467 3.801997 AGCCGGAGCCCATGAAGG 61.802 66.667 5.05 0.00 41.25 3.46
491 503 2.708325 GAGGAATATGAGGGGAAGCAGT 59.292 50.000 0.00 0.00 0.00 4.40
494 506 2.304470 GAGGAGGAATATGAGGGGAAGC 59.696 54.545 0.00 0.00 0.00 3.86
495 507 2.909662 GGAGGAGGAATATGAGGGGAAG 59.090 54.545 0.00 0.00 0.00 3.46
496 508 2.528813 AGGAGGAGGAATATGAGGGGAA 59.471 50.000 0.00 0.00 0.00 3.97
528 540 2.359169 CGGCCTGCCTCCAGACTTA 61.359 63.158 6.60 0.00 41.77 2.24
562 574 4.148825 AGATCCGGCGAGGTGTGC 62.149 66.667 9.30 0.00 41.99 4.57
564 576 3.148279 GGAGATCCGGCGAGGTGT 61.148 66.667 9.30 0.00 41.99 4.16
565 577 2.835431 AGGAGATCCGGCGAGGTG 60.835 66.667 9.30 0.00 42.08 4.00
566 578 2.519780 GAGGAGATCCGGCGAGGT 60.520 66.667 9.30 0.00 42.08 3.85
591 608 0.465705 GATCCAGAGTGGCGATTCCA 59.534 55.000 0.00 0.00 44.18 3.53
593 610 2.141517 CATGATCCAGAGTGGCGATTC 58.858 52.381 0.00 0.00 37.47 2.52
601 618 3.396946 ACCAATATGCCATGATCCAGAGT 59.603 43.478 0.00 0.00 0.00 3.24
604 621 4.030314 AGACCAATATGCCATGATCCAG 57.970 45.455 0.00 0.00 0.00 3.86
605 622 4.105217 AGAAGACCAATATGCCATGATCCA 59.895 41.667 0.00 0.00 0.00 3.41
608 625 5.768662 CAGAAGAAGACCAATATGCCATGAT 59.231 40.000 0.00 0.00 0.00 2.45
609 626 5.128205 CAGAAGAAGACCAATATGCCATGA 58.872 41.667 0.00 0.00 0.00 3.07
612 629 3.054139 AGCAGAAGAAGACCAATATGCCA 60.054 43.478 0.00 0.00 32.95 4.92
613 630 3.314635 CAGCAGAAGAAGACCAATATGCC 59.685 47.826 0.00 0.00 32.95 4.40
614 631 3.314635 CCAGCAGAAGAAGACCAATATGC 59.685 47.826 0.00 0.00 0.00 3.14
619 636 0.250901 GCCCAGCAGAAGAAGACCAA 60.251 55.000 0.00 0.00 0.00 3.67
623 640 0.034767 CATGGCCCAGCAGAAGAAGA 60.035 55.000 0.00 0.00 0.00 2.87
656 673 3.855853 GCCTCCCTCTTCCCTCGC 61.856 72.222 0.00 0.00 0.00 5.03
667 684 1.608046 CTATCCCTCTCGGCCTCCC 60.608 68.421 0.00 0.00 0.00 4.30
674 691 2.625790 CCTTCCACTTCTATCCCTCTCG 59.374 54.545 0.00 0.00 0.00 4.04
683 700 1.848652 CCCGAGACCTTCCACTTCTA 58.151 55.000 0.00 0.00 0.00 2.10
712 729 3.047877 CGTTTCACCCGAGCCACC 61.048 66.667 0.00 0.00 0.00 4.61
714 731 3.876589 GAGCGTTTCACCCGAGCCA 62.877 63.158 0.00 0.00 0.00 4.75
715 732 3.119096 GAGCGTTTCACCCGAGCC 61.119 66.667 0.00 0.00 0.00 4.70
717 734 2.809601 CCGAGCGTTTCACCCGAG 60.810 66.667 0.00 0.00 0.00 4.63
718 735 4.367023 CCCGAGCGTTTCACCCGA 62.367 66.667 0.00 0.00 0.00 5.14
736 753 1.080093 TTAGTGAACGAGCTGCCCG 60.080 57.895 0.85 0.85 0.00 6.13
737 754 0.320421 TGTTAGTGAACGAGCTGCCC 60.320 55.000 0.00 0.00 38.51 5.36
738 755 1.508632 TTGTTAGTGAACGAGCTGCC 58.491 50.000 0.00 0.00 38.51 4.85
740 757 3.184581 GTCCTTTGTTAGTGAACGAGCTG 59.815 47.826 0.00 0.00 38.51 4.24
741 758 3.391049 GTCCTTTGTTAGTGAACGAGCT 58.609 45.455 0.00 0.00 38.51 4.09
742 759 2.479275 GGTCCTTTGTTAGTGAACGAGC 59.521 50.000 0.00 0.00 38.51 5.03
743 760 2.729882 CGGTCCTTTGTTAGTGAACGAG 59.270 50.000 0.00 0.00 36.79 4.18
744 761 2.546373 CCGGTCCTTTGTTAGTGAACGA 60.546 50.000 0.00 0.00 36.79 3.85
745 762 1.796459 CCGGTCCTTTGTTAGTGAACG 59.204 52.381 0.00 0.00 38.51 3.95
747 764 2.701951 AGACCGGTCCTTTGTTAGTGAA 59.298 45.455 30.82 0.00 0.00 3.18
748 765 2.298163 GAGACCGGTCCTTTGTTAGTGA 59.702 50.000 30.82 0.00 0.00 3.41
749 766 2.299297 AGAGACCGGTCCTTTGTTAGTG 59.701 50.000 30.82 0.00 0.00 2.74
750 767 2.606378 AGAGACCGGTCCTTTGTTAGT 58.394 47.619 30.82 9.09 0.00 2.24
751 768 3.679824 AAGAGACCGGTCCTTTGTTAG 57.320 47.619 30.82 0.00 0.00 2.34
752 769 4.102054 AGAAAAGAGACCGGTCCTTTGTTA 59.898 41.667 33.14 0.00 33.52 2.41
753 770 3.118000 AGAAAAGAGACCGGTCCTTTGTT 60.118 43.478 33.14 24.89 33.52 2.83
754 771 2.438392 AGAAAAGAGACCGGTCCTTTGT 59.562 45.455 33.14 26.08 33.52 2.83
755 772 3.127425 AGAAAAGAGACCGGTCCTTTG 57.873 47.619 33.14 2.01 33.52 2.77
756 773 3.859061 AAGAAAAGAGACCGGTCCTTT 57.141 42.857 29.95 29.95 34.14 3.11
757 774 3.859061 AAAGAAAAGAGACCGGTCCTT 57.141 42.857 30.82 26.98 0.00 3.36
758 775 3.859061 AAAAGAAAAGAGACCGGTCCT 57.141 42.857 30.82 23.11 0.00 3.85
778 795 6.015180 AGCATCTACAGCCATTTTCTCAAAAA 60.015 34.615 0.00 0.00 38.66 1.94
779 796 5.477984 AGCATCTACAGCCATTTTCTCAAAA 59.522 36.000 0.00 0.00 34.41 2.44
780 797 5.012239 AGCATCTACAGCCATTTTCTCAAA 58.988 37.500 0.00 0.00 0.00 2.69
781 798 4.592942 AGCATCTACAGCCATTTTCTCAA 58.407 39.130 0.00 0.00 0.00 3.02
782 799 4.194640 GAGCATCTACAGCCATTTTCTCA 58.805 43.478 0.00 0.00 0.00 3.27
783 800 4.809815 GAGCATCTACAGCCATTTTCTC 57.190 45.455 0.00 0.00 0.00 2.87
807 824 1.169661 CCGGCAGCACAAAACACCTA 61.170 55.000 0.00 0.00 0.00 3.08
843 861 4.645921 GGCCTTTGTGGTGCGTGC 62.646 66.667 0.00 0.00 38.35 5.34
848 866 1.591327 GTTTGCGGCCTTTGTGGTG 60.591 57.895 0.00 0.00 38.35 4.17
850 868 2.028925 GGTTTGCGGCCTTTGTGG 59.971 61.111 0.00 0.00 39.35 4.17
897 915 3.083600 GAATGAACACGAGCGGCCG 62.084 63.158 24.05 24.05 0.00 6.13
898 916 2.750888 GGAATGAACACGAGCGGCC 61.751 63.158 0.00 0.00 0.00 6.13
899 917 2.750888 GGGAATGAACACGAGCGGC 61.751 63.158 0.00 0.00 0.00 6.53
900 918 2.106683 GGGGAATGAACACGAGCGG 61.107 63.158 0.00 0.00 0.00 5.52
901 919 1.375396 TGGGGAATGAACACGAGCG 60.375 57.895 0.00 0.00 0.00 5.03
904 922 2.350057 TTTGTGGGGAATGAACACGA 57.650 45.000 0.00 0.00 37.92 4.35
906 924 3.810310 TGTTTTGTGGGGAATGAACAC 57.190 42.857 0.00 0.00 35.75 3.32
907 925 4.826274 TTTGTTTTGTGGGGAATGAACA 57.174 36.364 0.00 0.00 0.00 3.18
936 976 2.027100 GGGTTTATGGAGGGATCGGATC 60.027 54.545 9.54 9.54 0.00 3.36
938 978 1.061657 AGGGTTTATGGAGGGATCGGA 60.062 52.381 0.00 0.00 0.00 4.55
946 986 3.391626 GAGAGGGGTTAGGGTTTATGGAG 59.608 52.174 0.00 0.00 0.00 3.86
965 1005 3.036959 GGGGAGGAGGAGGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
969 1009 4.179599 GGGAGGGGAGGAGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
971 1011 4.179599 GGGGGAGGGGAGGAGGAG 62.180 77.778 0.00 0.00 0.00 3.69
1018 1058 1.760086 CCGGAGAGGAGCTGGTGAT 60.760 63.158 0.00 0.00 45.00 3.06
1019 1059 2.363018 CCGGAGAGGAGCTGGTGA 60.363 66.667 0.00 0.00 45.00 4.02
1020 1060 4.154347 GCCGGAGAGGAGCTGGTG 62.154 72.222 5.05 0.00 45.00 4.17
1046 1086 4.692475 GGACGACGGGGTGGTTGG 62.692 72.222 0.00 0.00 0.00 3.77
1047 1087 3.584868 GAGGACGACGGGGTGGTTG 62.585 68.421 0.00 0.00 0.00 3.77
1048 1088 3.308705 GAGGACGACGGGGTGGTT 61.309 66.667 0.00 0.00 0.00 3.67
1049 1089 4.608774 TGAGGACGACGGGGTGGT 62.609 66.667 0.00 0.00 0.00 4.16
1050 1090 4.065281 GTGAGGACGACGGGGTGG 62.065 72.222 0.00 0.00 0.00 4.61
1051 1091 4.065281 GGTGAGGACGACGGGGTG 62.065 72.222 0.00 0.00 0.00 4.61
1510 1550 3.731653 GAGGAAGGAGCCGAGCAGC 62.732 68.421 0.00 0.00 0.00 5.25
1957 1997 0.250166 CCATCATGAGCAGGATCGCA 60.250 55.000 0.09 0.00 28.16 5.10
2267 2317 2.176273 GCTCCGCATTCAGCACGAT 61.176 57.895 0.00 0.00 46.13 3.73
2350 2400 0.744771 GCAAGTCGAGGATTGGACCC 60.745 60.000 6.97 0.00 32.98 4.46
2423 2473 6.977502 CACCAGAATCATCAGAACTAGTAGTG 59.022 42.308 2.90 0.00 0.00 2.74
2442 2492 4.437682 ACCAAAATTCTCAGACACCAGA 57.562 40.909 0.00 0.00 0.00 3.86
2565 2627 9.495754 GAAAAGTACTGCTTTCACATATTCATC 57.504 33.333 13.00 0.00 45.91 2.92
2651 2713 6.785076 TCAGTATTTTCACCTGGAATGGTTA 58.215 36.000 0.00 0.00 38.45 2.85
2678 2742 1.078709 CGACATTGCCGTCACTGAAT 58.921 50.000 0.00 0.00 35.54 2.57
2679 2743 0.249699 ACGACATTGCCGTCACTGAA 60.250 50.000 0.00 0.00 34.97 3.02
2680 2744 0.249699 AACGACATTGCCGTCACTGA 60.250 50.000 0.00 0.00 39.57 3.41
2681 2745 0.110688 CAACGACATTGCCGTCACTG 60.111 55.000 0.00 0.00 39.57 3.66
2682 2746 0.249699 TCAACGACATTGCCGTCACT 60.250 50.000 0.00 0.00 39.57 3.41
2683 2747 0.584396 TTCAACGACATTGCCGTCAC 59.416 50.000 0.00 0.00 39.57 3.67
2684 2748 1.518325 ATTCAACGACATTGCCGTCA 58.482 45.000 0.00 0.00 39.57 4.35
2685 2749 2.413796 TGTATTCAACGACATTGCCGTC 59.586 45.455 0.00 0.00 39.57 4.79
2686 2750 2.418692 TGTATTCAACGACATTGCCGT 58.581 42.857 0.00 0.00 42.61 5.68
2688 2752 4.419522 ACTTGTATTCAACGACATTGCC 57.580 40.909 0.00 0.00 38.29 4.52
2689 2753 6.687105 GGAATACTTGTATTCAACGACATTGC 59.313 38.462 25.44 8.60 38.00 3.56
2690 2754 7.747888 TGGAATACTTGTATTCAACGACATTG 58.252 34.615 25.44 0.00 38.00 2.82
2691 2755 7.915293 TGGAATACTTGTATTCAACGACATT 57.085 32.000 25.44 0.00 38.00 2.71
2730 2835 6.913873 TTGGCGTAATTTAGAAGATGGTAC 57.086 37.500 0.00 0.00 0.00 3.34
2731 2836 6.485313 CCATTGGCGTAATTTAGAAGATGGTA 59.515 38.462 0.00 0.00 0.00 3.25
2732 2837 5.299279 CCATTGGCGTAATTTAGAAGATGGT 59.701 40.000 0.00 0.00 0.00 3.55
2733 2838 5.530915 TCCATTGGCGTAATTTAGAAGATGG 59.469 40.000 0.00 0.00 33.38 3.51
2734 2839 6.618287 TCCATTGGCGTAATTTAGAAGATG 57.382 37.500 0.00 0.00 0.00 2.90
2735 2840 6.238759 GCTTCCATTGGCGTAATTTAGAAGAT 60.239 38.462 0.00 0.00 33.63 2.40
2736 2841 5.065988 GCTTCCATTGGCGTAATTTAGAAGA 59.934 40.000 0.00 0.00 33.63 2.87
2738 2843 4.702612 TGCTTCCATTGGCGTAATTTAGAA 59.297 37.500 0.00 0.00 0.00 2.10
2742 2847 4.470334 AATGCTTCCATTGGCGTAATTT 57.530 36.364 0.00 0.00 40.09 1.82
2743 2848 4.470334 AAATGCTTCCATTGGCGTAATT 57.530 36.364 0.00 0.00 40.69 1.40
2744 2849 4.470334 AAAATGCTTCCATTGGCGTAAT 57.530 36.364 0.00 0.00 40.69 1.89
2746 2851 3.951775 AAAAATGCTTCCATTGGCGTA 57.048 38.095 0.00 0.00 40.69 4.42
2747 2852 2.837532 AAAAATGCTTCCATTGGCGT 57.162 40.000 0.00 0.00 40.69 5.68
2772 4038 7.569408 CGCGTAGTTTAGAAGATGGTACGTATA 60.569 40.741 0.00 0.00 35.41 1.47
2776 4042 3.722780 CGCGTAGTTTAGAAGATGGTACG 59.277 47.826 0.00 0.00 35.92 3.67
2780 4046 4.669318 TCTTCGCGTAGTTTAGAAGATGG 58.331 43.478 12.66 0.00 42.61 3.51
2784 4050 8.116624 ACATATTTCTTCGCGTAGTTTAGAAG 57.883 34.615 12.66 3.18 40.85 2.85
2823 4089 5.591099 ACGTTCTGCAACATTTTCTGAAAT 58.409 33.333 3.31 0.00 35.90 2.17
2846 4112 6.434596 CAAAAACAATGTACGGAGAACATGA 58.565 36.000 0.00 0.00 37.62 3.07
2858 4124 5.549347 AGCATGCATTCCAAAAACAATGTA 58.451 33.333 21.98 0.00 33.27 2.29
2902 4168 5.266733 TGATAGCATTCCCAAAAAGATGC 57.733 39.130 0.00 0.00 35.47 3.91
2935 4201 9.868160 TTGGGGAAAAATTGTTACCATAATTTT 57.132 25.926 11.98 0.00 44.12 1.82
2939 4205 6.881602 GCATTGGGGAAAAATTGTTACCATAA 59.118 34.615 11.98 6.49 0.00 1.90
2943 4209 3.682377 CGCATTGGGGAAAAATTGTTACC 59.318 43.478 0.14 0.14 0.00 2.85
2948 4214 3.137533 ACAACGCATTGGGGAAAAATTG 58.862 40.909 0.00 2.43 40.42 2.32
2949 4215 3.483808 ACAACGCATTGGGGAAAAATT 57.516 38.095 0.00 0.00 40.42 1.82
2951 4217 2.990066 AACAACGCATTGGGGAAAAA 57.010 40.000 0.00 0.00 40.42 1.94
2952 4218 2.990066 AAACAACGCATTGGGGAAAA 57.010 40.000 0.00 0.00 40.42 2.29
2956 4222 1.946745 ACAAAAACAACGCATTGGGG 58.053 45.000 0.00 0.00 40.42 4.96
2958 4224 7.781763 TTTTTAAACAAAAACAACGCATTGG 57.218 28.000 0.00 0.00 40.42 3.16
2984 4250 9.424319 TGTATTTAAAAGTTTGCAAAACTGTGA 57.576 25.926 14.67 0.00 0.00 3.58
3076 4348 7.987750 AGTTTCCCTTCTCTGTTTTCTTATC 57.012 36.000 0.00 0.00 0.00 1.75
3089 4361 6.555463 TCGTCCATAATTAGTTTCCCTTCT 57.445 37.500 0.00 0.00 0.00 2.85
3106 4378 1.681538 GAGGAGCTGTCTATCGTCCA 58.318 55.000 0.00 0.00 0.00 4.02
3107 4379 0.955905 GGAGGAGCTGTCTATCGTCC 59.044 60.000 0.00 0.00 41.67 4.79
3108 4380 0.955905 GGGAGGAGCTGTCTATCGTC 59.044 60.000 0.00 0.00 0.00 4.20
3109 4381 0.259065 TGGGAGGAGCTGTCTATCGT 59.741 55.000 0.00 0.00 0.00 3.73
3110 4382 1.626686 ATGGGAGGAGCTGTCTATCG 58.373 55.000 0.00 0.00 0.00 2.92
3111 4383 4.622695 GCAATATGGGAGGAGCTGTCTATC 60.623 50.000 0.00 0.00 0.00 2.08
3112 4384 3.262915 GCAATATGGGAGGAGCTGTCTAT 59.737 47.826 0.00 0.00 0.00 1.98
3113 4385 2.634940 GCAATATGGGAGGAGCTGTCTA 59.365 50.000 0.00 0.00 0.00 2.59
3114 4386 1.419387 GCAATATGGGAGGAGCTGTCT 59.581 52.381 0.00 0.00 0.00 3.41
3117 4389 0.604780 CCGCAATATGGGAGGAGCTG 60.605 60.000 0.00 0.00 31.21 4.24
3119 4391 1.968540 GCCGCAATATGGGAGGAGC 60.969 63.158 2.19 0.00 31.21 4.70
3120 4392 1.302832 GGCCGCAATATGGGAGGAG 60.303 63.158 0.00 0.00 31.21 3.69
3123 4395 2.111043 ACGGCCGCAATATGGGAG 59.889 61.111 28.58 0.00 31.21 4.30
3124 4396 2.203139 CACGGCCGCAATATGGGA 60.203 61.111 28.58 0.00 31.21 4.37
3125 4397 3.964875 GCACGGCCGCAATATGGG 61.965 66.667 28.58 5.67 0.00 4.00
3127 4399 0.660488 TTTAGCACGGCCGCAATATG 59.340 50.000 28.58 17.29 0.00 1.78
3128 4400 1.604604 ATTTAGCACGGCCGCAATAT 58.395 45.000 28.58 9.76 0.00 1.28
3130 4402 1.604604 ATATTTAGCACGGCCGCAAT 58.395 45.000 28.58 17.38 0.00 3.56
3131 4403 1.064803 CAATATTTAGCACGGCCGCAA 59.935 47.619 28.58 11.73 0.00 4.85
3132 4404 0.660488 CAATATTTAGCACGGCCGCA 59.340 50.000 28.58 4.92 0.00 5.69
3133 4405 0.660300 GCAATATTTAGCACGGCCGC 60.660 55.000 28.58 10.39 0.00 6.53
3134 4406 0.384230 CGCAATATTTAGCACGGCCG 60.384 55.000 26.86 26.86 0.00 6.13
3135 4407 0.660300 GCGCAATATTTAGCACGGCC 60.660 55.000 0.30 0.00 0.00 6.13
3136 4408 0.660300 GGCGCAATATTTAGCACGGC 60.660 55.000 10.83 7.86 38.88 5.68
3137 4409 0.040425 GGGCGCAATATTTAGCACGG 60.040 55.000 10.83 0.00 0.00 4.94
3148 4420 2.319136 TATCAGTAAACGGGCGCAAT 57.681 45.000 10.83 0.00 0.00 3.56
3150 4422 2.096220 TTTATCAGTAAACGGGCGCA 57.904 45.000 10.83 0.00 0.00 6.09
3152 4424 4.609691 AACATTTATCAGTAAACGGGCG 57.390 40.909 0.00 0.00 32.91 6.13
3153 4425 6.190954 AGAAACATTTATCAGTAAACGGGC 57.809 37.500 0.00 0.00 32.91 6.13
3155 4427 9.027129 TCGATAGAAACATTTATCAGTAAACGG 57.973 33.333 0.00 0.00 46.15 4.44
3180 4452 1.982913 ACGCGGCGATTTTCATTTTTC 59.017 42.857 30.94 0.00 0.00 2.29
3181 4453 1.718711 CACGCGGCGATTTTCATTTTT 59.281 42.857 30.94 0.00 0.00 1.94
3196 4468 2.021039 CACAATTTTGGCCCACGCG 61.021 57.895 3.53 3.53 35.02 6.01
3219 4492 6.231211 AGAGAGAGAGACCGAGATAGATTTC 58.769 44.000 0.00 0.00 0.00 2.17
3230 4503 2.710096 AGGAGAAGAGAGAGAGACCG 57.290 55.000 0.00 0.00 0.00 4.79
3231 4504 6.844097 TTTTAAGGAGAAGAGAGAGAGACC 57.156 41.667 0.00 0.00 0.00 3.85
3309 4582 4.867599 GTAGAAGGTCGCCGCCGG 62.868 72.222 0.00 0.00 34.56 6.13
3310 4583 3.823330 AGTAGAAGGTCGCCGCCG 61.823 66.667 0.00 0.00 0.00 6.46
3311 4584 2.202756 CAGTAGAAGGTCGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
3312 4585 1.516603 GTCAGTAGAAGGTCGCCGC 60.517 63.158 0.00 0.00 0.00 6.53
3313 4586 1.226323 CGTCAGTAGAAGGTCGCCG 60.226 63.158 0.00 0.00 0.00 6.46
3314 4587 1.139095 CCGTCAGTAGAAGGTCGCC 59.861 63.158 0.00 0.00 38.44 5.54
3315 4588 1.516603 GCCGTCAGTAGAAGGTCGC 60.517 63.158 0.00 0.00 44.22 5.19
3316 4589 1.226323 CGCCGTCAGTAGAAGGTCG 60.226 63.158 0.00 0.00 44.22 4.79
3317 4590 0.739561 ATCGCCGTCAGTAGAAGGTC 59.260 55.000 0.00 0.00 44.22 3.85
3318 4591 0.456221 CATCGCCGTCAGTAGAAGGT 59.544 55.000 0.00 0.00 44.22 3.50
3319 4592 0.249073 CCATCGCCGTCAGTAGAAGG 60.249 60.000 0.00 0.00 45.04 3.46
3320 4593 0.872021 GCCATCGCCGTCAGTAGAAG 60.872 60.000 0.00 0.00 0.00 2.85
3321 4594 1.141019 GCCATCGCCGTCAGTAGAA 59.859 57.895 0.00 0.00 0.00 2.10
3322 4595 1.753078 AGCCATCGCCGTCAGTAGA 60.753 57.895 0.00 0.00 34.57 2.59
3323 4596 1.589993 CAGCCATCGCCGTCAGTAG 60.590 63.158 0.00 0.00 34.57 2.57
3324 4597 2.494445 CAGCCATCGCCGTCAGTA 59.506 61.111 0.00 0.00 34.57 2.74
3325 4598 4.457496 CCAGCCATCGCCGTCAGT 62.457 66.667 0.00 0.00 34.57 3.41
3331 4604 4.479993 AGTCAGCCAGCCATCGCC 62.480 66.667 0.00 0.00 34.57 5.54
3332 4605 2.894387 GAGTCAGCCAGCCATCGC 60.894 66.667 0.00 0.00 0.00 4.58
3333 4606 1.521010 CAGAGTCAGCCAGCCATCG 60.521 63.158 0.00 0.00 0.00 3.84
3334 4607 0.743701 CACAGAGTCAGCCAGCCATC 60.744 60.000 0.00 0.00 0.00 3.51
3335 4608 1.196766 TCACAGAGTCAGCCAGCCAT 61.197 55.000 0.00 0.00 0.00 4.40
3336 4609 1.838396 TCACAGAGTCAGCCAGCCA 60.838 57.895 0.00 0.00 0.00 4.75
3337 4610 1.375268 GTCACAGAGTCAGCCAGCC 60.375 63.158 0.00 0.00 0.00 4.85
3338 4611 1.735920 CGTCACAGAGTCAGCCAGC 60.736 63.158 0.00 0.00 0.00 4.85
3339 4612 1.735920 GCGTCACAGAGTCAGCCAG 60.736 63.158 0.00 0.00 0.00 4.85
3340 4613 2.340078 GCGTCACAGAGTCAGCCA 59.660 61.111 0.00 0.00 0.00 4.75
3341 4614 2.340078 TGCGTCACAGAGTCAGCC 59.660 61.111 0.00 0.00 0.00 4.85
3357 4630 4.436998 GACGTCGTGGGGGAGCTG 62.437 72.222 0.63 0.00 0.00 4.24
3366 4639 2.592623 TATGGAGCAGCGACGTCGTG 62.593 60.000 35.48 29.93 42.22 4.35
3367 4640 1.725557 ATATGGAGCAGCGACGTCGT 61.726 55.000 35.48 21.21 42.22 4.34
3368 4641 0.999228 GATATGGAGCAGCGACGTCG 60.999 60.000 32.57 32.57 43.27 5.12
3369 4642 0.664767 GGATATGGAGCAGCGACGTC 60.665 60.000 5.18 5.18 0.00 4.34
3370 4643 1.364171 GGATATGGAGCAGCGACGT 59.636 57.895 0.00 0.00 0.00 4.34
3371 4644 1.373497 GGGATATGGAGCAGCGACG 60.373 63.158 0.00 0.00 0.00 5.12
3372 4645 0.320247 CTGGGATATGGAGCAGCGAC 60.320 60.000 0.00 0.00 0.00 5.19
3373 4646 0.760567 ACTGGGATATGGAGCAGCGA 60.761 55.000 0.00 0.00 0.00 4.93
3374 4647 0.602106 CACTGGGATATGGAGCAGCG 60.602 60.000 0.00 0.00 0.00 5.18
3375 4648 0.761187 TCACTGGGATATGGAGCAGC 59.239 55.000 0.00 0.00 0.00 5.25
3376 4649 2.540265 GTCACTGGGATATGGAGCAG 57.460 55.000 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.