Multiple sequence alignment - TraesCS3A01G007800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G007800 chr3A 100.000 3928 0 0 1 3928 7792570 7788643 0.000000e+00 7254.0
1 TraesCS3A01G007800 chr3A 86.058 208 27 2 3429 3636 747736919 747736714 5.110000e-54 222.0
2 TraesCS3A01G007800 chr3A 91.367 139 10 2 1679 1815 681099621 681099483 5.180000e-44 189.0
3 TraesCS3A01G007800 chr3A 74.126 286 62 10 1092 1368 599528627 599528909 1.490000e-19 108.0
4 TraesCS3A01G007800 chr3D 91.436 1518 72 26 1 1479 1278501 1279999 0.000000e+00 2030.0
5 TraesCS3A01G007800 chr3D 88.573 1549 118 26 1914 3423 1280078 1281606 0.000000e+00 1825.0
6 TraesCS3A01G007800 chr3D 94.954 654 29 2 3277 3928 1289777 1290428 0.000000e+00 1022.0
7 TraesCS3A01G007800 chr3D 92.539 697 50 2 2527 3221 1287932 1288628 0.000000e+00 998.0
8 TraesCS3A01G007800 chr3D 91.489 141 10 2 1679 1817 614664192 614664052 4.010000e-45 193.0
9 TraesCS3A01G007800 chr3D 92.029 138 8 3 1679 1814 69661676 69661812 1.440000e-44 191.0
10 TraesCS3A01G007800 chr3D 73.427 286 64 10 1092 1368 456641437 456641719 3.230000e-16 97.1
11 TraesCS3A01G007800 chr3D 91.525 59 4 1 3871 3928 1284074 1284132 3.250000e-11 80.5
12 TraesCS3A01G007800 chrUn 91.787 1108 71 11 1908 3004 281635860 281634762 0.000000e+00 1524.0
13 TraesCS3A01G007800 chrUn 91.787 1108 71 11 1908 3004 281642734 281641636 0.000000e+00 1524.0
14 TraesCS3A01G007800 chrUn 91.787 1108 71 11 1908 3004 312315718 312314620 0.000000e+00 1524.0
15 TraesCS3A01G007800 chrUn 90.476 1092 64 25 575 1643 281636947 281635873 0.000000e+00 1404.0
16 TraesCS3A01G007800 chrUn 90.476 1092 64 25 575 1643 281643821 281642747 0.000000e+00 1404.0
17 TraesCS3A01G007800 chrUn 90.476 1092 64 25 575 1643 312316805 312315731 0.000000e+00 1404.0
18 TraesCS3A01G007800 chr7D 82.313 294 45 5 1087 1378 498495988 498496276 8.430000e-62 248.0
19 TraesCS3A01G007800 chr7D 84.390 205 32 0 3429 3633 588090587 588090383 6.660000e-48 202.0
20 TraesCS3A01G007800 chr6D 82.155 297 46 5 1087 1378 140156115 140155821 8.430000e-62 248.0
21 TraesCS3A01G007800 chr6D 72.819 298 74 7 247 539 362854022 362854317 1.160000e-15 95.3
22 TraesCS3A01G007800 chr2D 89.583 192 20 0 3426 3617 547853958 547854149 1.090000e-60 244.0
23 TraesCS3A01G007800 chr2D 73.348 469 107 15 17 481 572065340 572064886 1.460000e-34 158.0
24 TraesCS3A01G007800 chr2D 72.329 365 87 12 144 498 474989172 474989532 6.940000e-18 102.0
25 TraesCS3A01G007800 chr6B 81.879 298 45 7 1087 1378 240250360 240250066 3.920000e-60 243.0
26 TraesCS3A01G007800 chr4D 75.092 542 114 18 18 545 464305607 464305073 2.360000e-57 233.0
27 TraesCS3A01G007800 chr7B 87.500 192 24 0 3426 3617 527966344 527966535 5.110000e-54 222.0
28 TraesCS3A01G007800 chr1A 86.598 194 22 3 3426 3617 571987456 571987647 1.110000e-50 211.0
29 TraesCS3A01G007800 chr1A 91.429 140 10 2 1679 1816 551940047 551939908 1.440000e-44 191.0
30 TraesCS3A01G007800 chr5A 86.702 188 25 0 3426 3613 174924922 174925109 3.980000e-50 209.0
31 TraesCS3A01G007800 chr5A 92.754 138 8 2 1679 1814 671959639 671959502 8.610000e-47 198.0
32 TraesCS3A01G007800 chr5A 72.263 274 54 17 2368 2627 353054799 353055064 9.110000e-07 65.8
33 TraesCS3A01G007800 chr4A 84.804 204 31 0 3429 3632 571211426 571211223 5.140000e-49 206.0
34 TraesCS3A01G007800 chr4A 92.701 137 9 1 1679 1814 609417114 609417250 3.100000e-46 196.0
35 TraesCS3A01G007800 chr2A 85.417 192 28 0 3426 3617 740231690 740231881 2.390000e-47 200.0
36 TraesCS3A01G007800 chr2A 92.029 138 8 3 1679 1814 762775559 762775423 1.440000e-44 191.0
37 TraesCS3A01G007800 chr6A 91.367 139 11 1 1679 1816 502340536 502340674 5.180000e-44 189.0
38 TraesCS3A01G007800 chr5B 91.304 138 10 2 1679 1814 633278173 633278310 1.860000e-43 187.0
39 TraesCS3A01G007800 chr5B 72.628 274 53 17 2368 2627 298679423 298679688 1.960000e-08 71.3
40 TraesCS3A01G007800 chr1B 80.519 231 45 0 252 482 606360626 606360396 1.120000e-40 178.0
41 TraesCS3A01G007800 chr7A 79.221 231 43 5 100 327 10893589 10893817 5.260000e-34 156.0
42 TraesCS3A01G007800 chr2B 72.973 444 95 20 32 459 587245183 587244749 8.860000e-27 132.0
43 TraesCS3A01G007800 chr1D 75.862 261 50 8 103 351 308051350 308051091 1.920000e-23 121.0
44 TraesCS3A01G007800 chr1D 76.733 202 46 1 247 448 353565619 353565819 1.150000e-20 111.0
45 TraesCS3A01G007800 chr3B 75.697 251 50 9 301 544 130247374 130247128 8.920000e-22 115.0
46 TraesCS3A01G007800 chr5D 72.263 274 54 17 2368 2627 265541563 265541828 9.110000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G007800 chr3A 7788643 7792570 3927 True 7254.0 7254 100.0000 1 3928 1 chr3A.!!$R1 3927
1 TraesCS3A01G007800 chr3D 1278501 1290428 11927 False 1191.1 2030 91.8054 1 3928 5 chr3D.!!$F3 3927
2 TraesCS3A01G007800 chrUn 281634762 281636947 2185 True 1464.0 1524 91.1315 575 3004 2 chrUn.!!$R1 2429
3 TraesCS3A01G007800 chrUn 281641636 281643821 2185 True 1464.0 1524 91.1315 575 3004 2 chrUn.!!$R2 2429
4 TraesCS3A01G007800 chrUn 312314620 312316805 2185 True 1464.0 1524 91.1315 575 3004 2 chrUn.!!$R3 2429
5 TraesCS3A01G007800 chr4D 464305073 464305607 534 True 233.0 233 75.0920 18 545 1 chr4D.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 328 0.389948 GTTCAGGTACGCTGGTCCTG 60.390 60.000 10.33 4.3 46.94 3.86 F
858 874 1.004440 GCATGATACCTCGCCTCCC 60.004 63.158 0.00 0.0 0.00 4.30 F
2123 2297 0.174162 GGCATTTACAGGCAAGGCAG 59.826 55.000 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2077 2249 0.182061 CCATGCATGGTACTCCTGCT 59.818 55.0 33.68 0.0 43.05 4.24 R
2474 2678 0.107606 AGAGCTCGACGAGGAAGCTA 60.108 55.0 25.31 0.0 35.83 3.32 R
3540 12078 0.179145 CACGGTGGTCCACGATCTAC 60.179 60.0 15.93 0.0 34.83 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.087501 GAGGGCTCCGTTTTTAGCTG 58.912 55.000 0.00 0.00 38.80 4.24
90 91 3.330720 CAGGAAGGCGGGGAGGTT 61.331 66.667 0.00 0.00 0.00 3.50
93 94 4.035102 GAAGGCGGGGAGGTTGCT 62.035 66.667 0.00 0.00 0.00 3.91
153 154 2.214181 CTTCCGGCAGTGCGTCTAGT 62.214 60.000 9.45 0.00 0.00 2.57
162 163 1.962822 TGCGTCTAGTGTCGTCGGT 60.963 57.895 0.00 0.00 0.00 4.69
186 187 2.137528 TGTGGAAGTGTGGCTCCGA 61.138 57.895 0.00 0.00 0.00 4.55
190 191 1.296715 GAAGTGTGGCTCCGATGGT 59.703 57.895 0.00 0.00 0.00 3.55
195 196 1.519455 GTGGCTCCGATGGTTCTCG 60.519 63.158 0.00 0.00 38.37 4.04
199 200 3.774959 CTCCGATGGTTCTCGCGGG 62.775 68.421 6.13 1.01 43.71 6.13
248 249 1.376812 GTTGGATCCGGCCTTCGTT 60.377 57.895 7.39 0.00 37.11 3.85
260 261 2.611971 GGCCTTCGTTCATGTGTCTACA 60.612 50.000 0.00 0.00 41.89 2.74
275 276 4.932200 GTGTCTACAGGTTGGATTCTTCTG 59.068 45.833 0.00 0.00 0.00 3.02
279 280 5.960811 TCTACAGGTTGGATTCTTCTGATCT 59.039 40.000 0.00 0.00 0.00 2.75
280 281 5.096443 ACAGGTTGGATTCTTCTGATCTC 57.904 43.478 0.00 0.00 0.00 2.75
282 283 4.080695 CAGGTTGGATTCTTCTGATCTCCA 60.081 45.833 0.00 0.00 34.55 3.86
283 284 4.725810 AGGTTGGATTCTTCTGATCTCCAT 59.274 41.667 0.00 0.00 35.60 3.41
286 287 6.039159 GGTTGGATTCTTCTGATCTCCATTTC 59.961 42.308 0.00 0.00 35.60 2.17
300 301 4.100653 TCTCCATTTCTCTTCATCTGCGAT 59.899 41.667 0.00 0.00 0.00 4.58
318 319 2.156891 CGATGGTTGTTGTTCAGGTACG 59.843 50.000 0.00 0.00 0.00 3.67
327 328 0.389948 GTTCAGGTACGCTGGTCCTG 60.390 60.000 10.33 4.30 46.94 3.86
330 331 1.533273 AGGTACGCTGGTCCTGTGT 60.533 57.895 17.79 17.79 0.00 3.72
341 346 1.486726 GGTCCTGTGTAGCCTTAGCAT 59.513 52.381 0.00 0.00 43.56 3.79
344 349 3.041211 TCCTGTGTAGCCTTAGCATGAT 58.959 45.455 0.00 0.00 43.56 2.45
363 368 9.270640 AGCATGATGACTTTTTGATAGTCTATC 57.729 33.333 12.29 12.29 41.99 2.08
410 415 1.884926 GAAGGAGCGATGAAGGCGG 60.885 63.158 0.00 0.00 35.00 6.13
448 453 1.635844 CGGTGCTTATAGTCGTTGCA 58.364 50.000 0.00 0.00 0.00 4.08
484 489 7.118390 ACAGACCTCGATGAACTTTTATTTCTG 59.882 37.037 0.00 0.00 0.00 3.02
491 496 9.825972 TCGATGAACTTTTATTTCTGATGTTTC 57.174 29.630 0.00 0.00 0.00 2.78
522 527 9.787532 CTACCTTTACATTTCACAAATACATGG 57.212 33.333 0.00 0.00 0.00 3.66
624 639 5.128499 ACTCTGTACTGGATCAGATCTTTGG 59.872 44.000 10.36 1.61 39.48 3.28
709 725 9.620660 AATTTTCTCCAATACAAACGTGTTATC 57.379 29.630 0.00 0.00 39.30 1.75
744 760 3.762779 ACTACGTACGTACCTGCATTTC 58.237 45.455 23.60 0.00 0.00 2.17
823 839 1.555533 ACCAACCTACCTAGCAAGCTC 59.444 52.381 0.00 0.00 0.00 4.09
824 840 1.555075 CCAACCTACCTAGCAAGCTCA 59.445 52.381 0.00 0.00 0.00 4.26
852 868 1.202417 ACAAGGTCGCATGATACCTCG 60.202 52.381 17.06 10.62 45.51 4.63
858 874 1.004440 GCATGATACCTCGCCTCCC 60.004 63.158 0.00 0.00 0.00 4.30
870 886 1.729881 GCCTCCCGCTTTATTGCTG 59.270 57.895 0.00 0.00 0.00 4.41
972 1000 2.358369 TCTCAGCAGCAGCAGCAC 60.358 61.111 12.92 0.00 45.49 4.40
973 1001 2.668550 CTCAGCAGCAGCAGCACA 60.669 61.111 12.92 0.00 45.49 4.57
974 1002 2.668550 TCAGCAGCAGCAGCACAG 60.669 61.111 12.92 1.69 45.49 3.66
975 1003 2.668550 CAGCAGCAGCAGCACAGA 60.669 61.111 12.92 0.00 45.49 3.41
978 1006 2.561885 CAGCAGCAGCACAGAAGC 59.438 61.111 3.17 0.00 45.49 3.86
1176 1224 4.697756 CGGAGCAACTTCCCGCCA 62.698 66.667 0.00 0.00 36.62 5.69
1394 1561 2.341257 CGTCTTTGTGAGTGATCCCTG 58.659 52.381 0.00 0.00 0.00 4.45
1409 1577 5.049129 GTGATCCCTGTCTTTTTCTTCACTG 60.049 44.000 0.00 0.00 0.00 3.66
1411 1579 3.202151 TCCCTGTCTTTTTCTTCACTGGT 59.798 43.478 0.00 0.00 0.00 4.00
1492 1660 9.771915 AACAAATGCAAAAGTGAAAACTAATTG 57.228 25.926 0.00 0.00 0.00 2.32
1494 1662 9.640974 CAAATGCAAAAGTGAAAACTAATTGAG 57.359 29.630 0.00 0.00 0.00 3.02
1512 1680 7.639113 AATTGAGGATATCGGTTTTGCTAAA 57.361 32.000 0.00 0.00 0.00 1.85
1513 1681 6.677781 TTGAGGATATCGGTTTTGCTAAAG 57.322 37.500 0.00 0.00 0.00 1.85
1514 1682 4.574828 TGAGGATATCGGTTTTGCTAAAGC 59.425 41.667 11.98 11.98 42.50 3.51
1538 1707 7.050970 CACATGTAGAGTGCCCTAACTATTA 57.949 40.000 0.00 0.00 0.00 0.98
1541 1710 7.290248 ACATGTAGAGTGCCCTAACTATTACAT 59.710 37.037 0.00 7.58 39.35 2.29
1548 1717 9.991906 GAGTGCCCTAACTATTACATATGTAAA 57.008 33.333 27.45 17.09 42.93 2.01
1592 1761 3.426615 TGAGATTGGCGTGGGTATTTTT 58.573 40.909 0.00 0.00 0.00 1.94
1593 1762 3.442273 TGAGATTGGCGTGGGTATTTTTC 59.558 43.478 0.00 0.00 0.00 2.29
1596 1765 4.526650 AGATTGGCGTGGGTATTTTTCTTT 59.473 37.500 0.00 0.00 0.00 2.52
1597 1766 3.926821 TGGCGTGGGTATTTTTCTTTC 57.073 42.857 0.00 0.00 0.00 2.62
1598 1767 3.492337 TGGCGTGGGTATTTTTCTTTCT 58.508 40.909 0.00 0.00 0.00 2.52
1599 1768 3.892588 TGGCGTGGGTATTTTTCTTTCTT 59.107 39.130 0.00 0.00 0.00 2.52
1600 1769 4.342665 TGGCGTGGGTATTTTTCTTTCTTT 59.657 37.500 0.00 0.00 0.00 2.52
1601 1770 5.535406 TGGCGTGGGTATTTTTCTTTCTTTA 59.465 36.000 0.00 0.00 0.00 1.85
1625 1794 7.865706 ATATGTTTGATTGGGTCACTTAGAC 57.134 36.000 0.00 0.00 46.83 2.59
1643 1812 8.058328 CACTTAGACGTGCAATAATTAGATGTG 58.942 37.037 0.00 0.00 0.00 3.21
1644 1813 5.409643 AGACGTGCAATAATTAGATGTGC 57.590 39.130 0.00 6.37 35.75 4.57
1645 1814 4.273480 AGACGTGCAATAATTAGATGTGCC 59.727 41.667 0.00 3.15 34.25 5.01
1646 1815 3.315191 ACGTGCAATAATTAGATGTGCCC 59.685 43.478 0.00 0.55 34.25 5.36
1647 1816 3.565482 CGTGCAATAATTAGATGTGCCCT 59.435 43.478 0.00 0.00 34.25 5.19
1648 1817 4.754618 CGTGCAATAATTAGATGTGCCCTA 59.245 41.667 0.00 0.00 34.25 3.53
1649 1818 5.106948 CGTGCAATAATTAGATGTGCCCTAG 60.107 44.000 0.00 0.00 34.25 3.02
1650 1819 5.997746 GTGCAATAATTAGATGTGCCCTAGA 59.002 40.000 0.00 0.00 34.25 2.43
1651 1820 6.486657 GTGCAATAATTAGATGTGCCCTAGAA 59.513 38.462 0.00 0.00 34.25 2.10
1652 1821 7.013274 GTGCAATAATTAGATGTGCCCTAGAAA 59.987 37.037 0.00 0.00 34.25 2.52
1653 1822 7.559533 TGCAATAATTAGATGTGCCCTAGAAAA 59.440 33.333 9.45 0.00 34.25 2.29
1654 1823 8.413229 GCAATAATTAGATGTGCCCTAGAAAAA 58.587 33.333 0.00 0.00 0.00 1.94
1657 1826 7.588497 AATTAGATGTGCCCTAGAAAAATCC 57.412 36.000 0.00 0.00 0.00 3.01
1658 1827 4.870021 AGATGTGCCCTAGAAAAATCCT 57.130 40.909 0.00 0.00 0.00 3.24
1659 1828 5.198602 AGATGTGCCCTAGAAAAATCCTT 57.801 39.130 0.00 0.00 0.00 3.36
1660 1829 6.327386 AGATGTGCCCTAGAAAAATCCTTA 57.673 37.500 0.00 0.00 0.00 2.69
1661 1830 6.360618 AGATGTGCCCTAGAAAAATCCTTAG 58.639 40.000 0.00 0.00 0.00 2.18
1662 1831 5.514500 TGTGCCCTAGAAAAATCCTTAGT 57.486 39.130 0.00 0.00 0.00 2.24
1663 1832 6.630203 TGTGCCCTAGAAAAATCCTTAGTA 57.370 37.500 0.00 0.00 0.00 1.82
1664 1833 6.412214 TGTGCCCTAGAAAAATCCTTAGTAC 58.588 40.000 0.00 0.00 0.00 2.73
1695 1864 9.814899 ATGCATCATATGACTATCTAAGTTAGC 57.185 33.333 7.78 0.00 39.07 3.09
1696 1865 9.029368 TGCATCATATGACTATCTAAGTTAGCT 57.971 33.333 7.78 0.00 39.07 3.32
1705 1874 9.476928 TGACTATCTAAGTTAGCTAGGTTTTCT 57.523 33.333 19.83 3.42 39.07 2.52
1710 1879 7.838884 TCTAAGTTAGCTAGGTTTTCTTCTCC 58.161 38.462 0.00 0.00 0.00 3.71
1711 1880 5.074584 AGTTAGCTAGGTTTTCTTCTCCG 57.925 43.478 0.00 0.00 0.00 4.63
1712 1881 4.081586 AGTTAGCTAGGTTTTCTTCTCCGG 60.082 45.833 0.00 0.00 0.00 5.14
1713 1882 1.555533 AGCTAGGTTTTCTTCTCCGGG 59.444 52.381 0.00 0.00 0.00 5.73
1714 1883 1.278413 GCTAGGTTTTCTTCTCCGGGT 59.722 52.381 0.00 0.00 0.00 5.28
1715 1884 2.935676 GCTAGGTTTTCTTCTCCGGGTG 60.936 54.545 0.00 0.00 0.00 4.61
1716 1885 1.137697 AGGTTTTCTTCTCCGGGTGT 58.862 50.000 0.00 0.00 0.00 4.16
1717 1886 1.493446 AGGTTTTCTTCTCCGGGTGTT 59.507 47.619 0.00 0.00 0.00 3.32
1718 1887 2.092049 AGGTTTTCTTCTCCGGGTGTTT 60.092 45.455 0.00 0.00 0.00 2.83
1719 1888 2.034179 GGTTTTCTTCTCCGGGTGTTTG 59.966 50.000 0.00 0.00 0.00 2.93
1720 1889 2.946990 GTTTTCTTCTCCGGGTGTTTGA 59.053 45.455 0.00 0.00 0.00 2.69
1721 1890 3.284793 TTTCTTCTCCGGGTGTTTGAA 57.715 42.857 0.00 0.00 0.00 2.69
1722 1891 3.502123 TTCTTCTCCGGGTGTTTGAAT 57.498 42.857 0.00 0.00 0.00 2.57
1723 1892 2.778299 TCTTCTCCGGGTGTTTGAATG 58.222 47.619 0.00 0.00 0.00 2.67
1724 1893 1.812571 CTTCTCCGGGTGTTTGAATGG 59.187 52.381 0.00 0.00 0.00 3.16
1725 1894 1.060729 TCTCCGGGTGTTTGAATGGA 58.939 50.000 0.00 0.00 0.00 3.41
1726 1895 1.633432 TCTCCGGGTGTTTGAATGGAT 59.367 47.619 0.00 0.00 0.00 3.41
1727 1896 2.841266 TCTCCGGGTGTTTGAATGGATA 59.159 45.455 0.00 0.00 0.00 2.59
1728 1897 3.264706 TCTCCGGGTGTTTGAATGGATAA 59.735 43.478 0.00 0.00 0.00 1.75
1729 1898 3.349022 TCCGGGTGTTTGAATGGATAAC 58.651 45.455 0.00 0.00 0.00 1.89
1730 1899 2.096819 CCGGGTGTTTGAATGGATAACG 59.903 50.000 0.00 0.00 0.00 3.18
1731 1900 2.477189 CGGGTGTTTGAATGGATAACGC 60.477 50.000 0.00 0.00 0.00 4.84
1732 1901 2.159296 GGGTGTTTGAATGGATAACGCC 60.159 50.000 0.00 0.00 46.57 5.68
1733 1902 2.159296 GGTGTTTGAATGGATAACGCCC 60.159 50.000 0.00 0.00 43.34 6.13
1734 1903 2.096248 TGTTTGAATGGATAACGCCCC 58.904 47.619 0.00 0.00 0.00 5.80
1735 1904 2.291282 TGTTTGAATGGATAACGCCCCT 60.291 45.455 0.00 0.00 0.00 4.79
1736 1905 3.054287 TGTTTGAATGGATAACGCCCCTA 60.054 43.478 0.00 0.00 0.00 3.53
1737 1906 3.935818 TTGAATGGATAACGCCCCTAA 57.064 42.857 0.00 0.00 0.00 2.69
1738 1907 4.447138 TTGAATGGATAACGCCCCTAAT 57.553 40.909 0.00 0.00 0.00 1.73
1739 1908 3.750371 TGAATGGATAACGCCCCTAATG 58.250 45.455 0.00 0.00 0.00 1.90
1740 1909 3.392947 TGAATGGATAACGCCCCTAATGA 59.607 43.478 0.00 0.00 0.00 2.57
1741 1910 3.703001 ATGGATAACGCCCCTAATGAG 57.297 47.619 0.00 0.00 0.00 2.90
1742 1911 1.697432 TGGATAACGCCCCTAATGAGG 59.303 52.381 0.00 0.00 43.33 3.86
1743 1912 1.697982 GGATAACGCCCCTAATGAGGT 59.302 52.381 0.00 0.00 41.95 3.85
1744 1913 2.105993 GGATAACGCCCCTAATGAGGTT 59.894 50.000 0.00 0.00 41.95 3.50
1745 1914 3.325716 GGATAACGCCCCTAATGAGGTTA 59.674 47.826 0.00 0.00 41.95 2.85
1746 1915 4.019591 GGATAACGCCCCTAATGAGGTTAT 60.020 45.833 0.00 0.00 41.95 1.89
1747 1916 3.945640 AACGCCCCTAATGAGGTTATT 57.054 42.857 0.00 0.00 41.95 1.40
1748 1917 3.487120 ACGCCCCTAATGAGGTTATTC 57.513 47.619 0.00 0.00 41.95 1.75
1749 1918 2.105993 ACGCCCCTAATGAGGTTATTCC 59.894 50.000 0.00 0.00 41.95 3.01
1764 1933 7.775053 AGGTTATTCCTTTACTTGCAAATGA 57.225 32.000 0.00 0.00 45.67 2.57
1783 1952 8.867112 CAAATGATGCTACTTTGCTTATGAAT 57.133 30.769 0.00 0.00 0.00 2.57
1785 1954 7.812690 ATGATGCTACTTTGCTTATGAATGA 57.187 32.000 0.00 0.00 0.00 2.57
1786 1955 7.628769 TGATGCTACTTTGCTTATGAATGAA 57.371 32.000 0.00 0.00 0.00 2.57
1787 1956 8.229253 TGATGCTACTTTGCTTATGAATGAAT 57.771 30.769 0.00 0.00 0.00 2.57
1788 1957 9.341078 TGATGCTACTTTGCTTATGAATGAATA 57.659 29.630 0.00 0.00 0.00 1.75
1795 1964 9.466497 ACTTTGCTTATGAATGAATAAAGGAGA 57.534 29.630 0.00 0.00 0.00 3.71
1798 1967 9.685276 TTGCTTATGAATGAATAAAGGAGAAGA 57.315 29.630 0.00 0.00 0.00 2.87
1799 1968 9.685276 TGCTTATGAATGAATAAAGGAGAAGAA 57.315 29.630 0.00 0.00 0.00 2.52
1838 2007 3.930229 TCGTGCTATGTATGTTGTTGGTC 59.070 43.478 0.00 0.00 0.00 4.02
1839 2008 3.063452 CGTGCTATGTATGTTGTTGGTCC 59.937 47.826 0.00 0.00 0.00 4.46
1842 2012 5.878116 GTGCTATGTATGTTGTTGGTCCTTA 59.122 40.000 0.00 0.00 0.00 2.69
1853 2023 7.007723 TGTTGTTGGTCCTTAGATTTATTGGT 58.992 34.615 0.00 0.00 0.00 3.67
1854 2024 7.507616 TGTTGTTGGTCCTTAGATTTATTGGTT 59.492 33.333 0.00 0.00 0.00 3.67
1855 2025 8.364894 GTTGTTGGTCCTTAGATTTATTGGTTT 58.635 33.333 0.00 0.00 0.00 3.27
1856 2026 8.485578 TGTTGGTCCTTAGATTTATTGGTTTT 57.514 30.769 0.00 0.00 0.00 2.43
1857 2027 9.589461 TGTTGGTCCTTAGATTTATTGGTTTTA 57.411 29.630 0.00 0.00 0.00 1.52
1860 2030 9.983024 TGGTCCTTAGATTTATTGGTTTTATCA 57.017 29.630 0.00 0.00 0.00 2.15
1887 2057 9.844257 TTTTGTGATTTTATTCATTCCTTGGTT 57.156 25.926 0.00 0.00 0.00 3.67
1888 2058 9.844257 TTTGTGATTTTATTCATTCCTTGGTTT 57.156 25.926 0.00 0.00 0.00 3.27
1896 2066 6.731292 ATTCATTCCTTGGTTTAATAGGGC 57.269 37.500 0.00 0.00 0.00 5.19
1899 2069 2.289467 TCCTTGGTTTAATAGGGCCCA 58.711 47.619 27.56 10.89 0.00 5.36
1902 2072 2.765689 TGGTTTAATAGGGCCCATGG 57.234 50.000 27.56 4.14 0.00 3.66
1906 2076 3.778075 GGTTTAATAGGGCCCATGGTTTT 59.222 43.478 27.56 7.13 0.00 2.43
1918 2088 4.094739 GCCCATGGTTTTATCATTTTGTGC 59.905 41.667 11.73 0.00 0.00 4.57
1919 2089 5.243981 CCCATGGTTTTATCATTTTGTGCA 58.756 37.500 11.73 0.00 0.00 4.57
1924 2094 9.757859 CATGGTTTTATCATTTTGTGCATTTAC 57.242 29.630 0.00 0.00 0.00 2.01
2055 2227 2.932614 GTGTGGACTAGCTAGCAATGTG 59.067 50.000 20.91 4.30 0.00 3.21
2072 2244 3.097877 TGTGAGCTTGTGAGTACAGTG 57.902 47.619 0.00 0.00 38.23 3.66
2073 2245 2.430694 TGTGAGCTTGTGAGTACAGTGT 59.569 45.455 0.00 0.00 38.23 3.55
2074 2246 2.797156 GTGAGCTTGTGAGTACAGTGTG 59.203 50.000 5.88 0.00 38.23 3.82
2075 2247 1.795286 GAGCTTGTGAGTACAGTGTGC 59.205 52.381 5.88 4.24 38.23 4.57
2077 2249 2.628178 AGCTTGTGAGTACAGTGTGCTA 59.372 45.455 14.29 0.00 38.23 3.49
2078 2250 2.989840 GCTTGTGAGTACAGTGTGCTAG 59.010 50.000 14.29 8.97 38.23 3.42
2079 2251 2.724977 TGTGAGTACAGTGTGCTAGC 57.275 50.000 14.29 8.10 31.91 3.42
2080 2252 1.960689 TGTGAGTACAGTGTGCTAGCA 59.039 47.619 14.93 14.93 31.91 3.49
2081 2253 2.029918 TGTGAGTACAGTGTGCTAGCAG 60.030 50.000 20.03 9.07 31.91 4.24
2082 2254 1.546029 TGAGTACAGTGTGCTAGCAGG 59.454 52.381 20.03 10.72 0.00 4.85
2115 2289 1.029947 GTCCCGGTGGCATTTACAGG 61.030 60.000 0.00 0.00 33.83 4.00
2123 2297 0.174162 GGCATTTACAGGCAAGGCAG 59.826 55.000 0.00 0.00 0.00 4.85
2124 2298 1.176527 GCATTTACAGGCAAGGCAGA 58.823 50.000 0.00 0.00 0.00 4.26
2125 2299 1.753073 GCATTTACAGGCAAGGCAGAT 59.247 47.619 0.00 0.00 0.00 2.90
2221 2410 6.731164 AGTTTTTACCCAATCAAGTGTAACG 58.269 36.000 0.00 0.00 45.86 3.18
2223 2412 6.939132 TTTTACCCAATCAAGTGTAACGAA 57.061 33.333 0.00 0.00 45.86 3.85
2227 2416 4.992951 ACCCAATCAAGTGTAACGAAGTAC 59.007 41.667 0.00 0.00 45.00 2.73
2241 2430 8.702438 TGTAACGAAGTACTAAATGTTTACTGC 58.298 33.333 0.00 0.00 45.00 4.40
2267 2471 3.506398 TCAGTCAGTGATACCCTTGTCA 58.494 45.455 0.00 0.00 0.00 3.58
2450 2654 2.979676 ACCGTCGGCGACTACACA 60.980 61.111 33.90 0.00 41.33 3.72
2483 2687 2.413765 CTCGCCCGTAGCTTCCTC 59.586 66.667 0.00 0.00 40.39 3.71
2525 2729 1.805539 TCGCAAGATCGGCTTCACG 60.806 57.895 10.10 0.00 45.01 4.35
2630 2834 2.668212 TTCAACGCCAAGCTCCGG 60.668 61.111 0.00 0.00 0.00 5.14
2632 2836 4.697756 CAACGCCAAGCTCCGGGA 62.698 66.667 0.00 0.00 0.00 5.14
2648 2852 1.215647 GGACATGGTCGACGAGCTT 59.784 57.895 25.62 17.76 32.65 3.74
2649 2853 1.078759 GGACATGGTCGACGAGCTTG 61.079 60.000 30.00 30.00 39.80 4.01
2653 2857 4.415332 GGTCGACGAGCTTGCCGA 62.415 66.667 19.29 8.44 0.00 5.54
2695 2899 2.181021 GGTCGCAGAGGTGTACGG 59.819 66.667 0.00 0.00 36.95 4.02
2724 2928 2.573340 GCATCCTGCAAAACCCGG 59.427 61.111 0.00 0.00 44.26 5.73
2756 2960 3.319198 GTGAAGGCGTCCAGGGGA 61.319 66.667 0.00 0.00 0.00 4.81
2930 3134 4.015084 CCTTCAGCCATTTCTTGTGATCT 58.985 43.478 0.00 0.00 0.00 2.75
2934 3138 6.409524 TCAGCCATTTCTTGTGATCTTTTT 57.590 33.333 0.00 0.00 0.00 1.94
3008 10436 5.277250 GCTTGATTCATGTGCTACTTCTAGC 60.277 44.000 0.00 0.00 45.19 3.42
3015 10443 3.674997 TGTGCTACTTCTAGCCCTTTTG 58.325 45.455 0.00 0.00 44.45 2.44
3027 10455 3.038280 AGCCCTTTTGGTGCTTAGTTTT 58.962 40.909 0.00 0.00 41.27 2.43
3028 10456 4.219919 AGCCCTTTTGGTGCTTAGTTTTA 58.780 39.130 0.00 0.00 41.27 1.52
3034 10462 6.350194 CCTTTTGGTGCTTAGTTTTATCTCCC 60.350 42.308 0.00 0.00 34.07 4.30
3063 10491 2.864343 GCAGGGTAGTGCGTAGTTTATG 59.136 50.000 0.00 0.00 32.74 1.90
3064 10492 3.677976 GCAGGGTAGTGCGTAGTTTATGT 60.678 47.826 0.00 0.00 32.74 2.29
3068 10496 4.098501 GGGTAGTGCGTAGTTTATGTAGGT 59.901 45.833 0.00 0.00 0.00 3.08
3070 10498 5.517770 GGTAGTGCGTAGTTTATGTAGGTTG 59.482 44.000 0.00 0.00 0.00 3.77
3071 10499 3.930848 AGTGCGTAGTTTATGTAGGTTGC 59.069 43.478 0.00 0.00 0.00 4.17
3072 10500 3.680937 GTGCGTAGTTTATGTAGGTTGCA 59.319 43.478 0.00 0.00 0.00 4.08
3073 10501 4.331717 GTGCGTAGTTTATGTAGGTTGCAT 59.668 41.667 0.00 0.00 0.00 3.96
3093 10522 4.277672 GCATGCCATACTCTCATGATTTGT 59.722 41.667 6.36 0.00 39.80 2.83
3179 10608 0.181114 TGCAGTGACCAGAAGCAACT 59.819 50.000 0.00 0.00 31.42 3.16
3213 10643 6.346838 CGTTTCAAAAATGAAATCCTGGCTTC 60.347 38.462 7.21 0.00 39.58 3.86
3221 10651 4.158786 TGAAATCCTGGCTTCAAATGGAA 58.841 39.130 8.16 0.00 0.00 3.53
3222 10652 4.021192 TGAAATCCTGGCTTCAAATGGAAC 60.021 41.667 8.16 0.00 0.00 3.62
3223 10653 2.978156 TCCTGGCTTCAAATGGAACT 57.022 45.000 0.00 0.00 0.00 3.01
3224 10654 4.591321 ATCCTGGCTTCAAATGGAACTA 57.409 40.909 0.00 0.00 0.00 2.24
3236 11774 1.542492 TGGAACTAGTCACTCCGTCC 58.458 55.000 7.44 4.43 31.37 4.79
3252 11790 4.843728 TCCGTCCTTCAGCATAGAAATTT 58.156 39.130 0.00 0.00 0.00 1.82
3263 11801 6.094048 TCAGCATAGAAATTTCTTAGGCACAC 59.906 38.462 25.02 7.54 38.70 3.82
3264 11802 5.945784 AGCATAGAAATTTCTTAGGCACACA 59.054 36.000 25.02 5.07 38.70 3.72
3265 11803 6.604795 AGCATAGAAATTTCTTAGGCACACAT 59.395 34.615 25.02 7.19 38.70 3.21
3266 11804 7.123247 AGCATAGAAATTTCTTAGGCACACATT 59.877 33.333 25.02 7.62 38.70 2.71
3267 11805 7.761249 GCATAGAAATTTCTTAGGCACACATTT 59.239 33.333 25.02 0.00 38.70 2.32
3277 11815 8.916628 TCTTAGGCACACATTTATATTATGCA 57.083 30.769 0.00 0.00 33.24 3.96
3305 11843 3.378427 GGAGGGAGTACACGTACGTTTAT 59.622 47.826 20.23 9.96 40.80 1.40
3311 11849 6.197096 GGGAGTACACGTACGTTTATGTTATG 59.803 42.308 20.23 6.68 40.80 1.90
3343 11881 4.201608 CGTACACGTTTGTTGTAAGTGTGT 60.202 41.667 9.44 3.19 44.50 3.72
3358 11896 0.983467 TGTGTATGGCAAGCTCAGGA 59.017 50.000 0.00 0.00 0.00 3.86
3362 11900 1.484240 GTATGGCAAGCTCAGGAGTCT 59.516 52.381 0.00 0.00 0.00 3.24
3366 11904 0.108233 GCAAGCTCAGGAGTCTGGAG 60.108 60.000 7.09 7.09 41.23 3.86
3402 11940 2.714250 TCCCTTTTTGAGGTAAGGAGCA 59.286 45.455 0.00 0.00 44.71 4.26
3444 11982 3.849645 GCGCATGCATCTTATGGTACAAC 60.850 47.826 19.57 0.00 41.97 3.32
3476 12014 8.908786 TTATTCCGAAGAAGATTAAGCATGAT 57.091 30.769 0.00 0.00 34.86 2.45
3486 12024 9.857656 AGAAGATTAAGCATGATCAAAATAGGA 57.142 29.630 0.00 0.00 0.00 2.94
3495 12033 7.889073 AGCATGATCAAAATAGGATAGCAGATT 59.111 33.333 0.00 0.00 0.00 2.40
3505 12043 2.295349 GGATAGCAGATTGGTTGGCATG 59.705 50.000 0.00 0.00 0.00 4.06
3511 12049 3.254166 GCAGATTGGTTGGCATGGTATAG 59.746 47.826 0.00 0.00 0.00 1.31
3540 12078 5.816258 TCTGAGAGTACGACTGTTGTATAGG 59.184 44.000 10.91 0.90 0.00 2.57
3549 12087 5.007430 ACGACTGTTGTATAGGTAGATCGTG 59.993 44.000 0.00 0.00 37.65 4.35
3556 12094 2.062971 TAGGTAGATCGTGGACCACC 57.937 55.000 19.11 5.15 35.56 4.61
3575 12113 3.074412 ACCGTGCATAGAGGAACTTTTG 58.926 45.455 7.35 0.00 41.55 2.44
3577 12115 2.474526 CGTGCATAGAGGAACTTTTGCG 60.475 50.000 0.00 0.00 41.55 4.85
3582 12120 2.910688 AGAGGAACTTTTGCGTCTCA 57.089 45.000 0.00 0.00 41.55 3.27
3757 12297 5.392380 GCATGAGAACTAAATGTTGTCCCAG 60.392 44.000 0.00 0.00 45.15 4.45
3760 12300 2.851263 ACTAAATGTTGTCCCAGCGA 57.149 45.000 0.00 0.00 0.00 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.198304 GAGCCCTCCCGGTTTCATGT 62.198 60.000 0.00 0.00 0.00 3.21
9 10 2.680370 GGAGCCCTCCCGGTTTCAT 61.680 63.158 0.00 0.00 43.94 2.57
90 91 6.498303 TCTTATTATATCTTCAGGGAGCAGCA 59.502 38.462 0.00 0.00 0.00 4.41
93 94 8.670521 TGATCTTATTATATCTTCAGGGAGCA 57.329 34.615 0.00 0.00 0.00 4.26
142 143 1.496393 CGACGACACTAGACGCACT 59.504 57.895 0.00 0.00 36.39 4.40
153 154 2.979676 ACACGCCTACCGACGACA 60.980 61.111 0.00 0.00 41.02 4.35
162 163 1.369692 CCACACTTCCACACGCCTA 59.630 57.895 0.00 0.00 0.00 3.93
186 187 1.153168 CCAATCCCGCGAGAACCAT 60.153 57.895 8.23 0.00 0.00 3.55
190 191 1.376683 CCAACCAATCCCGCGAGAA 60.377 57.895 8.23 0.00 0.00 2.87
195 196 0.319469 CAAACACCAACCAATCCCGC 60.319 55.000 0.00 0.00 0.00 6.13
199 200 5.957842 TCATAGACAAACACCAACCAATC 57.042 39.130 0.00 0.00 0.00 2.67
235 236 0.744414 CACATGAACGAAGGCCGGAT 60.744 55.000 5.05 0.00 43.93 4.18
248 249 4.532126 AGAATCCAACCTGTAGACACATGA 59.468 41.667 0.00 0.00 33.14 3.07
260 261 4.107072 TGGAGATCAGAAGAATCCAACCT 58.893 43.478 0.00 0.00 39.43 3.50
275 276 4.448395 CGCAGATGAAGAGAAATGGAGATC 59.552 45.833 0.00 0.00 0.00 2.75
279 280 3.893326 TCGCAGATGAAGAGAAATGGA 57.107 42.857 0.00 0.00 0.00 3.41
280 281 3.250280 CCATCGCAGATGAAGAGAAATGG 59.750 47.826 16.69 0.00 45.12 3.16
282 283 4.148128 ACCATCGCAGATGAAGAGAAAT 57.852 40.909 16.69 0.00 45.12 2.17
283 284 3.616956 ACCATCGCAGATGAAGAGAAA 57.383 42.857 16.69 0.00 45.12 2.52
286 287 2.625737 ACAACCATCGCAGATGAAGAG 58.374 47.619 16.69 5.84 45.12 2.85
300 301 1.134340 AGCGTACCTGAACAACAACCA 60.134 47.619 0.00 0.00 0.00 3.67
318 319 0.902531 TAAGGCTACACAGGACCAGC 59.097 55.000 0.00 0.00 0.00 4.85
327 328 4.065321 AGTCATCATGCTAAGGCTACAC 57.935 45.455 0.00 0.00 39.59 2.90
330 331 6.179756 TCAAAAAGTCATCATGCTAAGGCTA 58.820 36.000 0.00 0.00 39.59 3.93
341 346 9.942850 TTGTGATAGACTATCAAAAAGTCATCA 57.057 29.630 23.64 12.82 45.91 3.07
344 349 9.554395 TTGTTGTGATAGACTATCAAAAAGTCA 57.446 29.630 23.83 16.89 45.91 3.41
362 367 3.554934 AGCCAGACAAATCTTGTTGTGA 58.445 40.909 0.00 0.00 45.52 3.58
363 368 3.304928 GGAGCCAGACAAATCTTGTTGTG 60.305 47.826 0.00 0.00 45.52 3.33
365 370 2.095567 CGGAGCCAGACAAATCTTGTTG 60.096 50.000 0.00 0.00 45.52 3.33
430 435 3.259064 TCTTGCAACGACTATAAGCACC 58.741 45.455 0.00 0.00 34.56 5.01
466 471 9.831737 AGAAACATCAGAAATAAAAGTTCATCG 57.168 29.630 0.00 0.00 0.00 3.84
624 639 1.956477 ACACCTGCATGACTTTTCACC 59.044 47.619 0.00 0.00 33.38 4.02
689 704 6.370442 TCAAGGATAACACGTTTGTATTGGAG 59.630 38.462 0.00 0.00 33.55 3.86
690 705 6.148150 GTCAAGGATAACACGTTTGTATTGGA 59.852 38.462 0.00 0.00 33.55 3.53
691 706 6.148811 AGTCAAGGATAACACGTTTGTATTGG 59.851 38.462 0.00 0.00 33.55 3.16
744 760 2.995258 GCAGAGCTGTCAAGAAGAAGAG 59.005 50.000 0.00 0.00 0.00 2.85
823 839 3.716006 CGACCTTGTGCGGTGCTG 61.716 66.667 0.00 0.00 37.42 4.41
852 868 1.729881 CAGCAATAAAGCGGGAGGC 59.270 57.895 0.00 0.00 44.05 4.70
858 874 0.523072 ACAGTGGCAGCAATAAAGCG 59.477 50.000 0.00 0.00 40.15 4.68
1095 1143 1.443872 GTCGCCGAACACGATCAGT 60.444 57.895 0.00 0.00 42.26 3.41
1394 1561 4.370364 TGCAACCAGTGAAGAAAAAGAC 57.630 40.909 0.00 0.00 0.00 3.01
1409 1577 3.935196 CAAACGGTGCATGCAACC 58.065 55.556 29.32 25.14 0.00 3.77
1476 1644 8.893727 CCGATATCCTCAATTAGTTTTCACTTT 58.106 33.333 0.00 0.00 34.06 2.66
1479 1647 7.787725 ACCGATATCCTCAATTAGTTTTCAC 57.212 36.000 0.00 0.00 0.00 3.18
1480 1648 8.801882 AAACCGATATCCTCAATTAGTTTTCA 57.198 30.769 0.00 0.00 0.00 2.69
1492 1660 5.096954 GCTTTAGCAAAACCGATATCCTC 57.903 43.478 0.00 0.00 41.59 3.71
1514 1682 3.895232 AGTTAGGGCACTCTACATGTG 57.105 47.619 9.11 0.00 38.36 3.21
1515 1683 6.610020 TGTAATAGTTAGGGCACTCTACATGT 59.390 38.462 2.69 2.69 0.00 3.21
1516 1684 7.050970 TGTAATAGTTAGGGCACTCTACATG 57.949 40.000 0.00 0.00 0.00 3.21
1517 1685 7.857404 ATGTAATAGTTAGGGCACTCTACAT 57.143 36.000 0.00 0.00 34.29 2.29
1518 1686 8.803235 CATATGTAATAGTTAGGGCACTCTACA 58.197 37.037 0.00 0.00 33.21 2.74
1519 1687 8.804204 ACATATGTAATAGTTAGGGCACTCTAC 58.196 37.037 6.56 0.00 28.50 2.59
1520 1688 8.951614 ACATATGTAATAGTTAGGGCACTCTA 57.048 34.615 6.56 0.00 28.50 2.43
1521 1689 7.857404 ACATATGTAATAGTTAGGGCACTCT 57.143 36.000 6.56 0.00 28.50 3.24
1522 1690 9.991906 TTTACATATGTAATAGTTAGGGCACTC 57.008 33.333 25.09 0.00 39.89 3.51
1555 1724 8.131100 CGCCAATCTCAGTGTAAAATAAATGAT 58.869 33.333 0.00 0.00 0.00 2.45
1561 1730 4.634004 CCACGCCAATCTCAGTGTAAAATA 59.366 41.667 0.00 0.00 33.14 1.40
1569 1738 1.204146 ATACCCACGCCAATCTCAGT 58.796 50.000 0.00 0.00 0.00 3.41
1570 1739 2.332063 AATACCCACGCCAATCTCAG 57.668 50.000 0.00 0.00 0.00 3.35
1571 1740 2.799126 AAATACCCACGCCAATCTCA 57.201 45.000 0.00 0.00 0.00 3.27
1572 1741 3.694566 AGAAAAATACCCACGCCAATCTC 59.305 43.478 0.00 0.00 0.00 2.75
1578 1747 4.514781 AAGAAAGAAAAATACCCACGCC 57.485 40.909 0.00 0.00 0.00 5.68
1592 1761 9.527157 TGACCCAATCAAACATATAAAGAAAGA 57.473 29.630 0.00 0.00 33.02 2.52
1593 1762 9.573133 GTGACCCAATCAAACATATAAAGAAAG 57.427 33.333 0.00 0.00 39.72 2.62
1596 1765 8.877864 AAGTGACCCAATCAAACATATAAAGA 57.122 30.769 0.00 0.00 39.72 2.52
1598 1767 9.967451 TCTAAGTGACCCAATCAAACATATAAA 57.033 29.630 0.00 0.00 39.72 1.40
1599 1768 9.391006 GTCTAAGTGACCCAATCAAACATATAA 57.609 33.333 0.00 0.00 39.72 0.98
1600 1769 7.709182 CGTCTAAGTGACCCAATCAAACATATA 59.291 37.037 0.00 0.00 42.49 0.86
1601 1770 6.538742 CGTCTAAGTGACCCAATCAAACATAT 59.461 38.462 0.00 0.00 42.49 1.78
1614 1783 5.796350 AATTATTGCACGTCTAAGTGACC 57.204 39.130 0.88 0.00 44.43 4.02
1615 1784 7.751047 TCTAATTATTGCACGTCTAAGTGAC 57.249 36.000 0.88 0.00 44.43 3.67
1625 1794 3.565482 AGGGCACATCTAATTATTGCACG 59.435 43.478 0.00 0.00 41.65 5.34
1626 1795 5.997746 TCTAGGGCACATCTAATTATTGCAC 59.002 40.000 0.00 6.70 36.83 4.57
1632 1801 8.502738 AGGATTTTTCTAGGGCACATCTAATTA 58.497 33.333 0.00 0.00 0.00 1.40
1643 1812 7.933215 TTTGTACTAAGGATTTTTCTAGGGC 57.067 36.000 0.00 0.00 0.00 5.19
1670 1839 9.029368 AGCTAACTTAGATAGTCATATGATGCA 57.971 33.333 9.02 0.00 35.54 3.96
1684 1853 8.479689 GGAGAAGAAAACCTAGCTAACTTAGAT 58.520 37.037 0.00 0.00 0.00 1.98
1685 1854 7.362747 CGGAGAAGAAAACCTAGCTAACTTAGA 60.363 40.741 0.00 0.00 0.00 2.10
1686 1855 6.752815 CGGAGAAGAAAACCTAGCTAACTTAG 59.247 42.308 0.00 0.00 0.00 2.18
1689 1858 4.081586 CCGGAGAAGAAAACCTAGCTAACT 60.082 45.833 0.00 0.00 0.00 2.24
1690 1859 4.182339 CCGGAGAAGAAAACCTAGCTAAC 58.818 47.826 0.00 0.00 0.00 2.34
1692 1861 2.764572 CCCGGAGAAGAAAACCTAGCTA 59.235 50.000 0.73 0.00 0.00 3.32
1693 1862 1.555533 CCCGGAGAAGAAAACCTAGCT 59.444 52.381 0.73 0.00 0.00 3.32
1694 1863 1.278413 ACCCGGAGAAGAAAACCTAGC 59.722 52.381 0.73 0.00 0.00 3.42
1695 1864 2.302157 ACACCCGGAGAAGAAAACCTAG 59.698 50.000 0.73 0.00 0.00 3.02
1696 1865 2.332117 ACACCCGGAGAAGAAAACCTA 58.668 47.619 0.73 0.00 0.00 3.08
1697 1866 1.137697 ACACCCGGAGAAGAAAACCT 58.862 50.000 0.73 0.00 0.00 3.50
1698 1867 1.977056 AACACCCGGAGAAGAAAACC 58.023 50.000 0.73 0.00 0.00 3.27
1699 1868 2.946990 TCAAACACCCGGAGAAGAAAAC 59.053 45.455 0.73 0.00 0.00 2.43
1700 1869 3.284793 TCAAACACCCGGAGAAGAAAA 57.715 42.857 0.73 0.00 0.00 2.29
1701 1870 3.284793 TTCAAACACCCGGAGAAGAAA 57.715 42.857 0.73 0.00 0.00 2.52
1702 1871 3.146066 CATTCAAACACCCGGAGAAGAA 58.854 45.455 0.73 0.00 0.00 2.52
1703 1872 2.552155 CCATTCAAACACCCGGAGAAGA 60.552 50.000 0.73 0.00 0.00 2.87
1704 1873 1.812571 CCATTCAAACACCCGGAGAAG 59.187 52.381 0.73 0.00 0.00 2.85
1705 1874 1.422024 TCCATTCAAACACCCGGAGAA 59.578 47.619 0.73 0.00 0.00 2.87
1706 1875 1.060729 TCCATTCAAACACCCGGAGA 58.939 50.000 0.73 0.00 0.00 3.71
1707 1876 2.128771 ATCCATTCAAACACCCGGAG 57.871 50.000 0.73 0.00 0.00 4.63
1708 1877 3.349022 GTTATCCATTCAAACACCCGGA 58.651 45.455 0.73 0.00 0.00 5.14
1709 1878 2.096819 CGTTATCCATTCAAACACCCGG 59.903 50.000 0.00 0.00 0.00 5.73
1710 1879 2.477189 GCGTTATCCATTCAAACACCCG 60.477 50.000 0.00 0.00 0.00 5.28
1711 1880 2.159296 GGCGTTATCCATTCAAACACCC 60.159 50.000 0.00 0.00 0.00 4.61
1712 1881 2.159296 GGGCGTTATCCATTCAAACACC 60.159 50.000 0.00 0.00 0.00 4.16
1713 1882 2.159296 GGGGCGTTATCCATTCAAACAC 60.159 50.000 0.00 0.00 0.00 3.32
1714 1883 2.096248 GGGGCGTTATCCATTCAAACA 58.904 47.619 0.00 0.00 0.00 2.83
1715 1884 2.375146 AGGGGCGTTATCCATTCAAAC 58.625 47.619 0.00 0.00 0.00 2.93
1716 1885 2.818751 AGGGGCGTTATCCATTCAAA 57.181 45.000 0.00 0.00 0.00 2.69
1717 1886 3.935818 TTAGGGGCGTTATCCATTCAA 57.064 42.857 0.00 0.00 0.00 2.69
1718 1887 3.392947 TCATTAGGGGCGTTATCCATTCA 59.607 43.478 0.00 0.00 0.00 2.57
1719 1888 4.003648 CTCATTAGGGGCGTTATCCATTC 58.996 47.826 0.00 0.00 0.00 2.67
1720 1889 3.244911 CCTCATTAGGGGCGTTATCCATT 60.245 47.826 0.00 0.00 39.48 3.16
1721 1890 2.305927 CCTCATTAGGGGCGTTATCCAT 59.694 50.000 0.00 0.00 39.48 3.41
1722 1891 1.697432 CCTCATTAGGGGCGTTATCCA 59.303 52.381 0.00 0.00 39.48 3.41
1723 1892 2.474410 CCTCATTAGGGGCGTTATCC 57.526 55.000 0.00 0.00 39.48 2.59
1741 1910 8.411318 CATCATTTGCAAGTAAAGGAATAACC 57.589 34.615 0.00 0.00 34.53 2.85
1758 1927 8.752254 CATTCATAAGCAAAGTAGCATCATTTG 58.248 33.333 0.00 0.00 37.07 2.32
1759 1928 8.689061 TCATTCATAAGCAAAGTAGCATCATTT 58.311 29.630 0.00 0.00 36.85 2.32
1760 1929 8.229253 TCATTCATAAGCAAAGTAGCATCATT 57.771 30.769 0.00 0.00 36.85 2.57
1761 1930 7.812690 TCATTCATAAGCAAAGTAGCATCAT 57.187 32.000 0.00 0.00 36.85 2.45
1762 1931 7.628769 TTCATTCATAAGCAAAGTAGCATCA 57.371 32.000 0.00 0.00 36.85 3.07
1769 1938 9.466497 TCTCCTTTATTCATTCATAAGCAAAGT 57.534 29.630 0.00 0.00 0.00 2.66
1772 1941 9.685276 TCTTCTCCTTTATTCATTCATAAGCAA 57.315 29.630 0.00 0.00 0.00 3.91
1809 1978 5.472137 ACAACATACATAGCACGACCTTTTT 59.528 36.000 0.00 0.00 0.00 1.94
1810 1979 5.001232 ACAACATACATAGCACGACCTTTT 58.999 37.500 0.00 0.00 0.00 2.27
1811 1980 4.575885 ACAACATACATAGCACGACCTTT 58.424 39.130 0.00 0.00 0.00 3.11
1812 1981 4.202245 ACAACATACATAGCACGACCTT 57.798 40.909 0.00 0.00 0.00 3.50
1818 1987 4.261801 AGGACCAACAACATACATAGCAC 58.738 43.478 0.00 0.00 0.00 4.40
1821 1990 8.964476 AATCTAAGGACCAACAACATACATAG 57.036 34.615 0.00 0.00 0.00 2.23
1824 1993 9.747898 AATAAATCTAAGGACCAACAACATACA 57.252 29.630 0.00 0.00 0.00 2.29
1861 2031 9.844257 AACCAAGGAATGAATAAAATCACAAAA 57.156 25.926 0.00 0.00 30.82 2.44
1862 2032 9.844257 AAACCAAGGAATGAATAAAATCACAAA 57.156 25.926 0.00 0.00 30.82 2.83
1870 2040 8.700973 GCCCTATTAAACCAAGGAATGAATAAA 58.299 33.333 0.00 0.00 31.64 1.40
1871 2041 7.289084 GGCCCTATTAAACCAAGGAATGAATAA 59.711 37.037 0.00 0.00 31.64 1.40
1872 2042 6.780522 GGCCCTATTAAACCAAGGAATGAATA 59.219 38.462 0.00 0.00 31.64 1.75
1873 2043 5.602561 GGCCCTATTAAACCAAGGAATGAAT 59.397 40.000 0.00 0.00 31.64 2.57
1874 2044 4.959839 GGCCCTATTAAACCAAGGAATGAA 59.040 41.667 0.00 0.00 31.64 2.57
1875 2045 4.542697 GGCCCTATTAAACCAAGGAATGA 58.457 43.478 0.00 0.00 31.64 2.57
1876 2046 3.641436 GGGCCCTATTAAACCAAGGAATG 59.359 47.826 17.04 0.00 31.64 2.67
1877 2047 3.273618 TGGGCCCTATTAAACCAAGGAAT 59.726 43.478 25.70 0.00 31.64 3.01
1878 2048 2.655407 TGGGCCCTATTAAACCAAGGAA 59.345 45.455 25.70 0.00 31.64 3.36
1879 2049 2.289467 TGGGCCCTATTAAACCAAGGA 58.711 47.619 25.70 0.00 31.64 3.36
1880 2050 2.838637 TGGGCCCTATTAAACCAAGG 57.161 50.000 25.70 0.00 0.00 3.61
1881 2051 2.965147 CCATGGGCCCTATTAAACCAAG 59.035 50.000 25.70 0.00 34.45 3.61
1882 2052 2.316372 ACCATGGGCCCTATTAAACCAA 59.684 45.455 25.70 0.00 34.45 3.67
1883 2053 1.933765 ACCATGGGCCCTATTAAACCA 59.066 47.619 25.70 0.00 35.39 3.67
1884 2054 2.767644 ACCATGGGCCCTATTAAACC 57.232 50.000 25.70 0.00 0.00 3.27
1885 2055 6.325286 TGATAAAACCATGGGCCCTATTAAAC 59.675 38.462 25.70 11.18 0.00 2.01
1886 2056 6.444704 TGATAAAACCATGGGCCCTATTAAA 58.555 36.000 25.70 0.07 0.00 1.52
1887 2057 6.031964 TGATAAAACCATGGGCCCTATTAA 57.968 37.500 25.70 1.02 0.00 1.40
1888 2058 5.671463 TGATAAAACCATGGGCCCTATTA 57.329 39.130 25.70 12.80 0.00 0.98
1889 2059 4.551215 TGATAAAACCATGGGCCCTATT 57.449 40.909 25.70 9.00 0.00 1.73
1890 2060 4.765195 ATGATAAAACCATGGGCCCTAT 57.235 40.909 25.70 12.30 0.00 2.57
1891 2061 4.551215 AATGATAAAACCATGGGCCCTA 57.449 40.909 25.70 10.18 0.00 3.53
1892 2062 3.419732 AATGATAAAACCATGGGCCCT 57.580 42.857 25.70 5.48 0.00 5.19
1893 2063 4.198530 CAAAATGATAAAACCATGGGCCC 58.801 43.478 17.59 17.59 0.00 5.80
1894 2064 4.635324 CACAAAATGATAAAACCATGGGCC 59.365 41.667 18.09 0.00 0.00 5.80
1895 2065 4.094739 GCACAAAATGATAAAACCATGGGC 59.905 41.667 18.09 0.00 0.00 5.36
1896 2066 5.243981 TGCACAAAATGATAAAACCATGGG 58.756 37.500 18.09 0.00 0.00 4.00
1899 2069 9.723601 AGTAAATGCACAAAATGATAAAACCAT 57.276 25.926 0.00 0.00 0.00 3.55
1924 2094 6.553100 TGGGCCCTATAAAACCAATAAATGAG 59.447 38.462 25.70 0.00 0.00 2.90
1972 2144 6.087522 GCTAACAGTCACGATATCTATCACC 58.912 44.000 0.34 0.00 32.98 4.02
2055 2227 1.795286 GCACACTGTACTCACAAGCTC 59.205 52.381 0.00 0.00 33.22 4.09
2072 2244 1.808133 GCATGGTACTCCTGCTAGCAC 60.808 57.143 14.93 2.35 36.05 4.40
2073 2245 0.465705 GCATGGTACTCCTGCTAGCA 59.534 55.000 18.22 18.22 36.05 3.49
2074 2246 0.465705 TGCATGGTACTCCTGCTAGC 59.534 55.000 8.10 8.10 38.10 3.42
2075 2247 2.549563 CCATGCATGGTACTCCTGCTAG 60.550 54.545 33.68 6.93 43.05 3.42
2077 2249 0.182061 CCATGCATGGTACTCCTGCT 59.818 55.000 33.68 0.00 43.05 4.24
2078 2250 2.711711 CCATGCATGGTACTCCTGC 58.288 57.895 33.68 7.58 43.05 4.85
2115 2289 2.023318 CTGCTAGCATCTGCCTTGC 58.977 57.895 19.72 2.04 43.38 4.01
2123 2297 1.153568 TGACACGGCTGCTAGCATC 60.154 57.895 19.72 14.63 44.75 3.91
2124 2298 1.448540 GTGACACGGCTGCTAGCAT 60.449 57.895 19.72 0.97 44.75 3.79
2125 2299 2.048222 GTGACACGGCTGCTAGCA 60.048 61.111 18.22 18.22 44.75 3.49
2168 2353 7.458397 ACATTTACTTCATTAACCAGAGGTGA 58.542 34.615 0.00 0.00 35.34 4.02
2205 2394 5.235516 AGTACTTCGTTACACTTGATTGGG 58.764 41.667 0.00 0.00 0.00 4.12
2210 2399 8.876275 AACATTTAGTACTTCGTTACACTTGA 57.124 30.769 0.00 0.00 0.00 3.02
2219 2408 7.654520 TCAAGCAGTAAACATTTAGTACTTCGT 59.345 33.333 0.00 0.00 30.83 3.85
2220 2409 8.014322 TCAAGCAGTAAACATTTAGTACTTCG 57.986 34.615 0.00 0.00 30.83 3.79
2221 2410 9.974750 GATCAAGCAGTAAACATTTAGTACTTC 57.025 33.333 0.00 0.00 30.83 3.01
2223 2412 9.155975 CTGATCAAGCAGTAAACATTTAGTACT 57.844 33.333 0.00 0.00 0.00 2.73
2241 2430 5.114780 CAAGGGTATCACTGACTGATCAAG 58.885 45.833 0.00 0.00 40.38 3.02
2450 2654 1.388065 CGAGGCCGATGAGGAAGTCT 61.388 60.000 0.00 0.00 45.00 3.24
2474 2678 0.107606 AGAGCTCGACGAGGAAGCTA 60.108 55.000 25.31 0.00 35.83 3.32
2483 2687 3.170810 GAGGCCGTAGAGCTCGACG 62.171 68.421 33.91 33.91 43.06 5.12
2507 2711 1.805539 CGTGAAGCCGATCTTGCGA 60.806 57.895 0.00 0.00 34.56 5.10
2630 2834 1.078759 CAAGCTCGTCGACCATGTCC 61.079 60.000 10.58 0.00 0.00 4.02
2632 2836 1.738099 GCAAGCTCGTCGACCATGT 60.738 57.895 10.58 0.00 0.00 3.21
2684 2888 1.272769 GTGAAGAAGCCGTACACCTCT 59.727 52.381 0.00 0.00 0.00 3.69
2695 2899 1.078143 AGGATGCCGGTGAAGAAGC 60.078 57.895 1.90 0.00 0.00 3.86
2717 2921 4.446413 CCGTAGCTCGCCGGGTTT 62.446 66.667 2.18 0.00 40.54 3.27
2748 2952 2.159490 TGCCACAACATCCCCTGGA 61.159 57.895 0.00 0.00 35.55 3.86
2756 2960 2.197324 AACCCCGTGCCACAACAT 59.803 55.556 0.00 0.00 0.00 2.71
2934 3138 8.038944 CCTTACCTTAGTGTATACAAGAAGCAA 58.961 37.037 7.25 9.20 0.00 3.91
2936 3140 7.779073 TCCTTACCTTAGTGTATACAAGAAGC 58.221 38.462 7.25 0.00 0.00 3.86
2949 3153 9.736414 GAATTTCCTACTTTTCCTTACCTTAGT 57.264 33.333 0.00 0.00 0.00 2.24
3008 10436 6.350194 GGAGATAAAACTAAGCACCAAAAGGG 60.350 42.308 0.00 0.00 44.81 3.95
3015 10443 6.835819 AAAAGGGAGATAAAACTAAGCACC 57.164 37.500 0.00 0.00 0.00 5.01
3044 10472 4.340381 CCTACATAAACTACGCACTACCCT 59.660 45.833 0.00 0.00 0.00 4.34
3054 10482 4.638421 TGGCATGCAACCTACATAAACTAC 59.362 41.667 21.36 0.00 0.00 2.73
3063 10491 3.134458 GAGAGTATGGCATGCAACCTAC 58.866 50.000 21.36 13.86 0.00 3.18
3064 10492 2.771372 TGAGAGTATGGCATGCAACCTA 59.229 45.455 21.36 1.82 0.00 3.08
3068 10496 3.564053 TCATGAGAGTATGGCATGCAA 57.436 42.857 21.36 9.21 39.30 4.08
3070 10498 4.277672 ACAAATCATGAGAGTATGGCATGC 59.722 41.667 9.90 9.90 39.30 4.06
3071 10499 6.387041 AACAAATCATGAGAGTATGGCATG 57.613 37.500 10.98 0.00 40.46 4.06
3072 10500 7.414222 AAAACAAATCATGAGAGTATGGCAT 57.586 32.000 4.88 4.88 0.00 4.40
3073 10501 6.839124 AAAACAAATCATGAGAGTATGGCA 57.161 33.333 0.09 0.00 0.00 4.92
3179 10608 8.655651 ATTTCATTTTTGAAACGGAAGCTTTA 57.344 26.923 0.00 0.00 40.12 1.85
3188 10617 4.990426 AGCCAGGATTTCATTTTTGAAACG 59.010 37.500 3.46 0.00 40.12 3.60
3189 10618 6.482973 TGAAGCCAGGATTTCATTTTTGAAAC 59.517 34.615 3.46 0.00 40.12 2.78
3213 10643 3.926616 ACGGAGTGACTAGTTCCATTTG 58.073 45.455 11.71 0.00 42.51 2.32
3236 11774 7.148188 TGTGCCTAAGAAATTTCTATGCTGAAG 60.148 37.037 20.76 9.53 36.28 3.02
3252 11790 8.916628 TGCATAATATAAATGTGTGCCTAAGA 57.083 30.769 0.00 0.00 0.00 2.10
3265 11803 9.432982 ACTCCCTCCAAAAATGCATAATATAAA 57.567 29.630 0.00 0.00 0.00 1.40
3267 11805 9.515226 GTACTCCCTCCAAAAATGCATAATATA 57.485 33.333 0.00 0.00 0.00 0.86
3268 11806 8.004215 TGTACTCCCTCCAAAAATGCATAATAT 58.996 33.333 0.00 0.00 0.00 1.28
3269 11807 7.284489 GTGTACTCCCTCCAAAAATGCATAATA 59.716 37.037 0.00 0.00 0.00 0.98
3270 11808 6.096846 GTGTACTCCCTCCAAAAATGCATAAT 59.903 38.462 0.00 0.00 0.00 1.28
3271 11809 5.417580 GTGTACTCCCTCCAAAAATGCATAA 59.582 40.000 0.00 0.00 0.00 1.90
3272 11810 4.947388 GTGTACTCCCTCCAAAAATGCATA 59.053 41.667 0.00 0.00 0.00 3.14
3273 11811 3.763897 GTGTACTCCCTCCAAAAATGCAT 59.236 43.478 0.00 0.00 0.00 3.96
3274 11812 3.153919 GTGTACTCCCTCCAAAAATGCA 58.846 45.455 0.00 0.00 0.00 3.96
3275 11813 2.161609 CGTGTACTCCCTCCAAAAATGC 59.838 50.000 0.00 0.00 0.00 3.56
3276 11814 3.408634 ACGTGTACTCCCTCCAAAAATG 58.591 45.455 0.00 0.00 0.00 2.32
3277 11815 3.782656 ACGTGTACTCCCTCCAAAAAT 57.217 42.857 0.00 0.00 0.00 1.82
3305 11843 5.564213 CGTGTACGTTTGTCTTCATAACA 57.436 39.130 0.00 0.00 34.11 2.41
3343 11881 1.483827 CAGACTCCTGAGCTTGCCATA 59.516 52.381 0.00 0.00 43.02 2.74
3366 11904 7.996385 TCAAAAAGGGAAAACTAGCTATATGC 58.004 34.615 0.00 0.00 43.29 3.14
3423 11961 3.604543 CGTTGTACCATAAGATGCATGCG 60.605 47.826 14.09 0.00 0.00 4.73
3431 11969 7.977853 GGAATAAACTCTCGTTGTACCATAAGA 59.022 37.037 0.00 0.00 32.65 2.10
3444 11982 8.630278 TTAATCTTCTTCGGAATAAACTCTCG 57.370 34.615 0.00 0.00 33.06 4.04
3476 12014 6.547141 CCAACCAATCTGCTATCCTATTTTGA 59.453 38.462 0.00 0.00 0.00 2.69
3486 12024 2.313317 CCATGCCAACCAATCTGCTAT 58.687 47.619 0.00 0.00 0.00 2.97
3495 12033 4.227300 AGAAAGACTATACCATGCCAACCA 59.773 41.667 0.00 0.00 0.00 3.67
3505 12043 6.762661 AGTCGTACTCTCAGAAAGACTATACC 59.237 42.308 0.00 0.00 35.95 2.73
3511 12049 4.752661 ACAGTCGTACTCTCAGAAAGAC 57.247 45.455 0.00 0.00 0.00 3.01
3540 12078 0.179145 CACGGTGGTCCACGATCTAC 60.179 60.000 15.93 0.00 34.83 2.59
3549 12087 1.144057 CCTCTATGCACGGTGGTCC 59.856 63.158 10.60 0.00 0.00 4.46
3556 12094 2.474526 CGCAAAAGTTCCTCTATGCACG 60.475 50.000 0.00 0.00 38.32 5.34
3575 12113 5.116882 AGAATAGGGTTACAATTGAGACGC 58.883 41.667 13.59 16.58 0.00 5.19
3577 12115 9.057089 CCATAAGAATAGGGTTACAATTGAGAC 57.943 37.037 13.59 9.68 0.00 3.36
3656 12196 2.348660 CTGAGCAAAGAAGAGCTGGAG 58.651 52.381 0.00 0.00 42.04 3.86
3757 12297 1.065764 GATGGGCCGGAAATTTCGC 59.934 57.895 5.05 10.32 0.00 4.70
3760 12300 0.334676 TGGAGATGGGCCGGAAATTT 59.665 50.000 5.05 0.00 0.00 1.82
3788 12328 2.317371 GAGATGGGGCTCCTCAGATA 57.683 55.000 3.07 0.00 0.00 1.98
3854 12394 8.178313 ACTAGAGAATTCGCAAAAATAAGAAGC 58.822 33.333 11.94 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.