Multiple sequence alignment - TraesCS3A01G007700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G007700 chr3A 100.000 2495 0 0 1 2495 7780684 7783178 0.000000e+00 4608.0
1 TraesCS3A01G007700 chr3D 90.902 1220 77 12 746 1950 1298027 1296827 0.000000e+00 1607.0
2 TraesCS3A01G007700 chr3D 87.104 442 31 13 2046 2462 1296783 1296343 6.240000e-131 477.0
3 TraesCS3A01G007700 chr3D 92.166 217 16 1 529 745 108290851 108291066 3.120000e-79 305.0
4 TraesCS3A01G007700 chr3D 86.765 136 17 1 52 186 1298553 1298418 1.550000e-32 150.0
5 TraesCS3A01G007700 chr3D 93.684 95 6 0 442 536 1298178 1298084 2.590000e-30 143.0
6 TraesCS3A01G007700 chrUn 89.300 1243 67 27 745 1950 34529919 34528706 0.000000e+00 1498.0
7 TraesCS3A01G007700 chrUn 88.393 336 24 9 2046 2366 34528662 34528327 8.370000e-105 390.0
8 TraesCS3A01G007700 chr7A 94.366 213 12 0 529 741 429734495 429734707 6.650000e-86 327.0
9 TraesCS3A01G007700 chr7A 94.231 208 12 0 532 739 299326030 299325823 4.000000e-83 318.0
10 TraesCS3A01G007700 chr2A 93.839 211 13 0 529 739 509549466 509549256 4.000000e-83 318.0
11 TraesCS3A01G007700 chr6A 92.925 212 15 0 529 740 117403106 117403317 2.410000e-80 309.0
12 TraesCS3A01G007700 chr2B 91.892 222 17 1 519 739 782101590 782101369 2.410000e-80 309.0
13 TraesCS3A01G007700 chr1A 92.925 212 15 0 529 740 265038582 265038793 2.410000e-80 309.0
14 TraesCS3A01G007700 chr1A 92.891 211 15 0 529 739 291232833 291233043 8.670000e-80 307.0
15 TraesCS3A01G007700 chr1A 92.891 211 15 0 529 739 351584643 351584433 8.670000e-80 307.0
16 TraesCS3A01G007700 chr4B 82.927 164 23 1 213 376 124756080 124755922 2.590000e-30 143.0
17 TraesCS3A01G007700 chr7B 83.226 155 21 2 220 374 557186109 557186258 1.200000e-28 137.0
18 TraesCS3A01G007700 chr1B 79.891 184 28 5 193 376 537313107 537312933 2.610000e-25 126.0
19 TraesCS3A01G007700 chr1B 87.500 56 1 4 317 370 484286653 484286704 2.680000e-05 60.2
20 TraesCS3A01G007700 chr1B 96.774 31 1 0 17 47 171594518 171594488 4.000000e-03 52.8
21 TraesCS3A01G007700 chr4A 79.348 184 30 5 193 376 372017345 372017520 3.370000e-24 122.0
22 TraesCS3A01G007700 chr4D 80.120 166 24 4 213 376 88135919 88135761 5.640000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G007700 chr3A 7780684 7783178 2494 False 4608.00 4608 100.00000 1 2495 1 chr3A.!!$F1 2494
1 TraesCS3A01G007700 chr3D 1296343 1298553 2210 True 594.25 1607 89.61375 52 2462 4 chr3D.!!$R1 2410
2 TraesCS3A01G007700 chrUn 34528327 34529919 1592 True 944.00 1498 88.84650 745 2366 2 chrUn.!!$R1 1621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
959 993 0.104671 GCCATCTCTCTCACAGGCTC 59.895 60.0 0.0 0.0 39.02 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2414 2527 0.249322 ATGCATGTACGTACTCGGGC 60.249 55.0 25.12 20.98 41.85 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.457496 GCCGCCTGCTAGCACAGA 62.457 66.667 14.93 0.00 40.25 3.41
18 19 2.202851 CCGCCTGCTAGCACAGAG 60.203 66.667 14.93 9.94 40.25 3.35
19 20 2.714991 CCGCCTGCTAGCACAGAGA 61.715 63.158 14.93 0.00 40.25 3.10
20 21 1.216444 CGCCTGCTAGCACAGAGAA 59.784 57.895 14.93 0.00 40.25 2.87
21 22 1.080995 CGCCTGCTAGCACAGAGAAC 61.081 60.000 14.93 0.00 40.25 3.01
22 23 0.742635 GCCTGCTAGCACAGAGAACC 60.743 60.000 14.93 0.00 40.25 3.62
23 24 0.610174 CCTGCTAGCACAGAGAACCA 59.390 55.000 14.93 0.00 40.25 3.67
24 25 1.209019 CCTGCTAGCACAGAGAACCAT 59.791 52.381 14.93 0.00 40.25 3.55
25 26 2.277969 CTGCTAGCACAGAGAACCATG 58.722 52.381 14.93 0.00 40.25 3.66
26 27 1.901833 TGCTAGCACAGAGAACCATGA 59.098 47.619 14.93 0.00 0.00 3.07
27 28 2.275318 GCTAGCACAGAGAACCATGAC 58.725 52.381 10.63 0.00 0.00 3.06
28 29 2.093764 GCTAGCACAGAGAACCATGACT 60.094 50.000 10.63 0.00 0.00 3.41
29 30 3.618507 GCTAGCACAGAGAACCATGACTT 60.619 47.826 10.63 0.00 0.00 3.01
30 31 3.051081 AGCACAGAGAACCATGACTTC 57.949 47.619 0.00 0.00 0.00 3.01
31 32 1.728971 GCACAGAGAACCATGACTTCG 59.271 52.381 0.00 0.00 0.00 3.79
32 33 2.341257 CACAGAGAACCATGACTTCGG 58.659 52.381 0.00 0.00 0.00 4.30
33 34 1.338200 ACAGAGAACCATGACTTCGGC 60.338 52.381 0.00 0.00 0.00 5.54
34 35 0.976641 AGAGAACCATGACTTCGGCA 59.023 50.000 0.00 0.00 0.00 5.69
35 36 1.556911 AGAGAACCATGACTTCGGCAT 59.443 47.619 0.00 0.00 0.00 4.40
36 37 1.667724 GAGAACCATGACTTCGGCATG 59.332 52.381 2.70 2.70 42.07 4.06
40 41 3.157727 CATGACTTCGGCATGGTGA 57.842 52.632 1.73 0.00 39.48 4.02
41 42 1.012086 CATGACTTCGGCATGGTGAG 58.988 55.000 1.73 0.00 39.48 3.51
42 43 0.107508 ATGACTTCGGCATGGTGAGG 60.108 55.000 0.00 0.00 0.00 3.86
43 44 1.296715 GACTTCGGCATGGTGAGGT 59.703 57.895 0.00 0.00 0.00 3.85
44 45 1.003355 ACTTCGGCATGGTGAGGTG 60.003 57.895 0.00 0.00 0.00 4.00
45 46 1.003355 CTTCGGCATGGTGAGGTGT 60.003 57.895 0.00 0.00 0.00 4.16
46 47 1.300971 CTTCGGCATGGTGAGGTGTG 61.301 60.000 0.00 0.00 0.00 3.82
47 48 2.746412 TTCGGCATGGTGAGGTGTGG 62.746 60.000 0.00 0.00 0.00 4.17
48 49 2.756400 GGCATGGTGAGGTGTGGA 59.244 61.111 0.00 0.00 0.00 4.02
49 50 1.675641 GGCATGGTGAGGTGTGGAC 60.676 63.158 0.00 0.00 0.00 4.02
50 51 1.073025 GCATGGTGAGGTGTGGACA 59.927 57.895 0.00 0.00 0.00 4.02
51 52 0.957395 GCATGGTGAGGTGTGGACAG 60.957 60.000 0.00 0.00 0.00 3.51
52 53 0.957395 CATGGTGAGGTGTGGACAGC 60.957 60.000 0.56 0.56 44.12 4.40
74 75 2.680370 GGGCGATGGGAAGGGAAGT 61.680 63.158 0.00 0.00 0.00 3.01
101 102 2.002586 CAATGTGGCGACTGGAGTAAG 58.997 52.381 0.00 0.00 0.00 2.34
117 118 2.573341 TAAGCTTCTCGGTCGTCGCG 62.573 60.000 0.00 0.00 39.05 5.87
118 119 4.755614 GCTTCTCGGTCGTCGCGT 62.756 66.667 5.77 0.00 39.05 6.01
126 127 4.191485 GTCGTCGCGTCGGCATTG 62.191 66.667 24.32 0.00 39.92 2.82
130 131 2.048597 TCGCGTCGGCATTGAAGT 60.049 55.556 5.77 0.00 39.92 3.01
131 132 1.074319 GTCGCGTCGGCATTGAAGTA 61.074 55.000 5.77 0.00 39.92 2.24
132 133 0.800683 TCGCGTCGGCATTGAAGTAG 60.801 55.000 5.77 0.00 39.92 2.57
139 140 2.170738 GCATTGAAGTAGTGCCGCA 58.829 52.632 0.00 0.00 36.13 5.69
140 141 0.734889 GCATTGAAGTAGTGCCGCAT 59.265 50.000 0.00 0.00 36.13 4.73
144 145 0.321564 TGAAGTAGTGCCGCATGCTT 60.322 50.000 17.13 0.00 42.00 3.91
152 153 2.176546 CCGCATGCTTGTCCGTTG 59.823 61.111 17.13 0.00 0.00 4.10
153 154 2.324330 CCGCATGCTTGTCCGTTGA 61.324 57.895 17.13 0.00 0.00 3.18
186 187 3.181440 ACCGGCATCAATATCATGGAGTT 60.181 43.478 0.00 0.00 0.00 3.01
188 189 4.393062 CCGGCATCAATATCATGGAGTTAC 59.607 45.833 0.00 0.00 0.00 2.50
191 192 5.470098 GGCATCAATATCATGGAGTTACGTT 59.530 40.000 0.00 0.00 0.00 3.99
192 193 6.649141 GGCATCAATATCATGGAGTTACGTTA 59.351 38.462 0.00 0.00 0.00 3.18
193 194 7.360101 GGCATCAATATCATGGAGTTACGTTAC 60.360 40.741 0.00 0.00 0.00 2.50
194 195 7.385205 GCATCAATATCATGGAGTTACGTTACT 59.615 37.037 6.97 6.97 0.00 2.24
195 196 9.908152 CATCAATATCATGGAGTTACGTTACTA 57.092 33.333 7.28 0.00 0.00 1.82
202 203 9.970553 ATCATGGAGTTACGTTACTATATAGGA 57.029 33.333 14.25 2.17 0.00 2.94
203 204 9.797642 TCATGGAGTTACGTTACTATATAGGAA 57.202 33.333 14.25 9.02 0.00 3.36
226 227 8.989980 GGAAAGAGTATTAGTAACATATGTGGC 58.010 37.037 9.63 5.49 0.00 5.01
229 230 9.712305 AAGAGTATTAGTAACATATGTGGCATC 57.288 33.333 9.63 0.00 0.00 3.91
231 232 9.489084 GAGTATTAGTAACATATGTGGCATCAA 57.511 33.333 9.63 0.14 0.00 2.57
232 233 9.845740 AGTATTAGTAACATATGTGGCATCAAA 57.154 29.630 9.63 0.00 0.00 2.69
238 239 6.468333 AACATATGTGGCATCAAATTAGCA 57.532 33.333 9.63 0.00 0.00 3.49
239 240 6.659745 ACATATGTGGCATCAAATTAGCAT 57.340 33.333 7.78 0.00 0.00 3.79
240 241 7.764141 ACATATGTGGCATCAAATTAGCATA 57.236 32.000 7.78 0.00 0.00 3.14
241 242 8.357290 ACATATGTGGCATCAAATTAGCATAT 57.643 30.769 7.78 0.00 0.00 1.78
242 243 8.809066 ACATATGTGGCATCAAATTAGCATATT 58.191 29.630 7.78 0.00 0.00 1.28
246 247 8.406730 TGTGGCATCAAATTAGCATATTATGA 57.593 30.769 7.87 0.00 0.00 2.15
247 248 8.858094 TGTGGCATCAAATTAGCATATTATGAA 58.142 29.630 7.87 0.00 0.00 2.57
248 249 9.695526 GTGGCATCAAATTAGCATATTATGAAA 57.304 29.630 7.87 1.75 0.00 2.69
249 250 9.917129 TGGCATCAAATTAGCATATTATGAAAG 57.083 29.630 7.87 0.00 0.00 2.62
250 251 8.866956 GGCATCAAATTAGCATATTATGAAAGC 58.133 33.333 7.87 0.00 0.00 3.51
251 252 9.414295 GCATCAAATTAGCATATTATGAAAGCA 57.586 29.630 7.87 0.00 0.00 3.91
305 306 9.784531 ATTTAGTATGATAAATGCTGCTACTGT 57.215 29.630 0.00 0.00 34.76 3.55
306 307 9.613428 TTTAGTATGATAAATGCTGCTACTGTT 57.387 29.630 0.00 0.00 0.00 3.16
307 308 7.721286 AGTATGATAAATGCTGCTACTGTTC 57.279 36.000 0.00 0.00 0.00 3.18
308 309 6.708054 AGTATGATAAATGCTGCTACTGTTCC 59.292 38.462 0.00 0.00 0.00 3.62
309 310 5.102953 TGATAAATGCTGCTACTGTTCCT 57.897 39.130 0.00 0.00 0.00 3.36
310 311 6.233905 TGATAAATGCTGCTACTGTTCCTA 57.766 37.500 0.00 0.00 0.00 2.94
311 312 6.830912 TGATAAATGCTGCTACTGTTCCTAT 58.169 36.000 0.00 0.00 0.00 2.57
312 313 7.962441 TGATAAATGCTGCTACTGTTCCTATA 58.038 34.615 0.00 0.00 0.00 1.31
313 314 8.597167 TGATAAATGCTGCTACTGTTCCTATAT 58.403 33.333 0.00 0.00 0.00 0.86
317 318 9.799106 AAATGCTGCTACTGTTCCTATATAAAT 57.201 29.630 0.00 0.00 0.00 1.40
346 347 9.788960 AGTTGATTGAAGTTTTAAGACTTTGAC 57.211 29.630 12.25 1.78 39.84 3.18
347 348 9.788960 GTTGATTGAAGTTTTAAGACTTTGACT 57.211 29.630 12.25 0.00 39.84 3.41
387 389 9.261180 AGATGTACACTTATTTATGACGAATGG 57.739 33.333 0.00 0.00 0.00 3.16
389 391 9.607988 ATGTACACTTATTTATGACGAATGGAA 57.392 29.630 0.00 0.00 0.00 3.53
393 395 9.607988 ACACTTATTTATGACGAATGGAATACA 57.392 29.630 0.00 0.00 0.00 2.29
405 407 8.958119 ACGAATGGAATACAATACTATGTTGT 57.042 30.769 0.00 0.00 42.12 3.32
414 416 8.896320 ATACAATACTATGTTGTATGGCGAAA 57.104 30.769 9.37 0.00 45.87 3.46
415 417 7.801716 ACAATACTATGTTGTATGGCGAAAT 57.198 32.000 0.00 0.00 37.98 2.17
416 418 7.639039 ACAATACTATGTTGTATGGCGAAATG 58.361 34.615 0.00 0.00 37.98 2.32
418 420 6.565811 AATACTATGTTGTATGGCGAAATGCG 60.566 38.462 0.00 0.00 36.97 4.73
419 421 8.851630 AATACTATGTTGTATGGCGAAATGCGT 61.852 37.037 0.00 0.00 36.97 5.24
427 429 3.183490 GCGAAATGCGTACGAACAG 57.817 52.632 21.65 5.52 43.41 3.16
428 430 0.437295 GCGAAATGCGTACGAACAGT 59.563 50.000 21.65 4.55 43.41 3.55
429 431 1.136446 GCGAAATGCGTACGAACAGTT 60.136 47.619 21.65 13.75 43.41 3.16
430 432 2.090967 GCGAAATGCGTACGAACAGTTA 59.909 45.455 21.65 0.00 43.41 2.24
431 433 3.642210 CGAAATGCGTACGAACAGTTAC 58.358 45.455 21.65 7.29 34.64 2.50
432 434 3.480825 CGAAATGCGTACGAACAGTTACC 60.481 47.826 21.65 2.49 34.64 2.85
433 435 1.621107 ATGCGTACGAACAGTTACCG 58.379 50.000 21.65 0.00 0.00 4.02
434 436 0.310543 TGCGTACGAACAGTTACCGT 59.689 50.000 21.65 5.47 39.94 4.83
435 437 0.704551 GCGTACGAACAGTTACCGTG 59.295 55.000 21.65 0.00 37.69 4.94
436 438 1.925946 GCGTACGAACAGTTACCGTGT 60.926 52.381 21.65 0.00 37.69 4.49
437 439 1.710249 CGTACGAACAGTTACCGTGTG 59.290 52.381 10.44 0.11 37.69 3.82
438 440 2.053627 GTACGAACAGTTACCGTGTGG 58.946 52.381 9.67 0.00 42.84 4.17
439 441 0.746063 ACGAACAGTTACCGTGTGGA 59.254 50.000 0.00 0.00 39.21 4.02
440 442 1.342174 ACGAACAGTTACCGTGTGGAT 59.658 47.619 0.00 0.00 39.21 3.41
451 453 1.610624 CCGTGTGGATGCTTTACAGGT 60.611 52.381 0.00 0.00 37.49 4.00
463 465 3.004419 GCTTTACAGGTGTTTTGAGGGTC 59.996 47.826 0.00 0.00 0.00 4.46
464 466 3.935818 TTACAGGTGTTTTGAGGGTCA 57.064 42.857 0.00 0.00 0.00 4.02
471 473 2.558359 GTGTTTTGAGGGTCAGGATTGG 59.442 50.000 0.00 0.00 0.00 3.16
530 532 7.037438 TGGAGTTAACTAGCATTACTTTACCG 58.963 38.462 8.42 0.00 0.00 4.02
531 533 7.038048 GGAGTTAACTAGCATTACTTTACCGT 58.962 38.462 8.42 0.00 0.00 4.83
536 538 5.408356 ACTAGCATTACTTTACCGTCACAG 58.592 41.667 0.00 0.00 0.00 3.66
537 539 4.530710 AGCATTACTTTACCGTCACAGA 57.469 40.909 0.00 0.00 0.00 3.41
538 540 5.086104 AGCATTACTTTACCGTCACAGAT 57.914 39.130 0.00 0.00 0.00 2.90
539 541 5.488341 AGCATTACTTTACCGTCACAGATT 58.512 37.500 0.00 0.00 0.00 2.40
541 543 6.534079 AGCATTACTTTACCGTCACAGATTAC 59.466 38.462 0.00 0.00 0.00 1.89
544 546 7.878477 TTACTTTACCGTCACAGATTACAAG 57.122 36.000 0.00 0.00 0.00 3.16
546 548 5.924825 ACTTTACCGTCACAGATTACAAGTC 59.075 40.000 0.00 0.00 0.00 3.01
547 549 3.314541 ACCGTCACAGATTACAAGTCC 57.685 47.619 0.00 0.00 0.00 3.85
548 550 2.897969 ACCGTCACAGATTACAAGTCCT 59.102 45.455 0.00 0.00 0.00 3.85
550 552 4.082354 ACCGTCACAGATTACAAGTCCTAC 60.082 45.833 0.00 0.00 0.00 3.18
551 553 4.096311 CGTCACAGATTACAAGTCCTACG 58.904 47.826 0.00 0.00 0.00 3.51
552 554 3.858238 GTCACAGATTACAAGTCCTACGC 59.142 47.826 0.00 0.00 0.00 4.42
553 555 2.852413 CACAGATTACAAGTCCTACGCG 59.148 50.000 3.53 3.53 0.00 6.01
554 556 2.490903 ACAGATTACAAGTCCTACGCGT 59.509 45.455 19.17 19.17 0.00 6.01
555 557 3.691118 ACAGATTACAAGTCCTACGCGTA 59.309 43.478 19.40 19.40 0.00 4.42
556 558 4.337555 ACAGATTACAAGTCCTACGCGTAT 59.662 41.667 20.91 5.41 0.00 3.06
557 559 5.528690 ACAGATTACAAGTCCTACGCGTATA 59.471 40.000 20.91 8.44 0.00 1.47
558 560 5.850128 CAGATTACAAGTCCTACGCGTATAC 59.150 44.000 20.91 19.74 0.00 1.47
559 561 4.552166 TTACAAGTCCTACGCGTATACC 57.448 45.455 20.91 10.04 0.00 2.73
560 562 2.648059 ACAAGTCCTACGCGTATACCT 58.352 47.619 20.91 12.19 0.00 3.08
561 563 3.808728 ACAAGTCCTACGCGTATACCTA 58.191 45.455 20.91 0.00 0.00 3.08
562 564 3.812053 ACAAGTCCTACGCGTATACCTAG 59.188 47.826 20.91 8.56 0.00 3.02
563 565 4.060900 CAAGTCCTACGCGTATACCTAGA 58.939 47.826 20.91 7.23 0.00 2.43
564 566 4.550076 AGTCCTACGCGTATACCTAGAT 57.450 45.455 20.91 2.47 0.00 1.98
565 567 4.904241 AGTCCTACGCGTATACCTAGATT 58.096 43.478 20.91 4.40 0.00 2.40
566 568 4.694509 AGTCCTACGCGTATACCTAGATTG 59.305 45.833 20.91 3.59 0.00 2.67
567 569 3.438087 TCCTACGCGTATACCTAGATTGC 59.562 47.826 20.91 0.00 0.00 3.56
568 570 2.719426 ACGCGTATACCTAGATTGCC 57.281 50.000 11.67 0.00 0.00 4.52
569 571 1.958579 ACGCGTATACCTAGATTGCCA 59.041 47.619 11.67 0.00 0.00 4.92
570 572 2.030185 ACGCGTATACCTAGATTGCCAG 60.030 50.000 11.67 0.00 0.00 4.85
571 573 2.030185 CGCGTATACCTAGATTGCCAGT 60.030 50.000 0.00 0.00 0.00 4.00
572 574 3.552273 CGCGTATACCTAGATTGCCAGTT 60.552 47.826 0.00 0.00 0.00 3.16
573 575 4.377897 GCGTATACCTAGATTGCCAGTTT 58.622 43.478 0.00 0.00 0.00 2.66
574 576 4.814771 GCGTATACCTAGATTGCCAGTTTT 59.185 41.667 0.00 0.00 0.00 2.43
575 577 5.987347 GCGTATACCTAGATTGCCAGTTTTA 59.013 40.000 0.00 0.00 0.00 1.52
576 578 6.649557 GCGTATACCTAGATTGCCAGTTTTAT 59.350 38.462 0.00 0.00 0.00 1.40
577 579 7.148623 GCGTATACCTAGATTGCCAGTTTTATC 60.149 40.741 0.00 0.00 0.00 1.75
578 580 7.870954 CGTATACCTAGATTGCCAGTTTTATCA 59.129 37.037 0.00 0.00 0.00 2.15
579 581 8.989980 GTATACCTAGATTGCCAGTTTTATCAC 58.010 37.037 0.00 0.00 0.00 3.06
580 582 5.193679 ACCTAGATTGCCAGTTTTATCACC 58.806 41.667 0.00 0.00 0.00 4.02
581 583 4.580580 CCTAGATTGCCAGTTTTATCACCC 59.419 45.833 0.00 0.00 0.00 4.61
582 584 4.322057 AGATTGCCAGTTTTATCACCCT 57.678 40.909 0.00 0.00 0.00 4.34
583 585 5.450818 AGATTGCCAGTTTTATCACCCTA 57.549 39.130 0.00 0.00 0.00 3.53
584 586 5.826643 AGATTGCCAGTTTTATCACCCTAA 58.173 37.500 0.00 0.00 0.00 2.69
585 587 6.435164 AGATTGCCAGTTTTATCACCCTAAT 58.565 36.000 0.00 0.00 0.00 1.73
586 588 7.582719 AGATTGCCAGTTTTATCACCCTAATA 58.417 34.615 0.00 0.00 0.00 0.98
587 589 8.227507 AGATTGCCAGTTTTATCACCCTAATAT 58.772 33.333 0.00 0.00 0.00 1.28
588 590 9.515226 GATTGCCAGTTTTATCACCCTAATATA 57.485 33.333 0.00 0.00 0.00 0.86
589 591 9.875708 ATTGCCAGTTTTATCACCCTAATATAA 57.124 29.630 0.00 0.00 0.00 0.98
590 592 9.702253 TTGCCAGTTTTATCACCCTAATATAAA 57.298 29.630 0.00 0.00 0.00 1.40
591 593 9.127277 TGCCAGTTTTATCACCCTAATATAAAC 57.873 33.333 0.00 0.00 0.00 2.01
592 594 9.350951 GCCAGTTTTATCACCCTAATATAAACT 57.649 33.333 0.00 0.00 0.00 2.66
637 639 9.136323 ACCTTTTGAAAATAGAACATCTGAAGT 57.864 29.630 0.00 0.00 0.00 3.01
638 640 9.971922 CCTTTTGAAAATAGAACATCTGAAGTT 57.028 29.630 0.00 0.00 0.00 2.66
690 692 8.932791 ACGACTTGTATTAGGTTAGTCAAATTG 58.067 33.333 0.00 0.00 36.00 2.32
691 693 9.146984 CGACTTGTATTAGGTTAGTCAAATTGA 57.853 33.333 0.00 0.00 36.00 2.57
706 708 6.368213 GTCAAATTGACAACCTAAAGGTACG 58.632 40.000 20.08 0.00 45.94 3.67
707 709 7.054108 GTCAAATTGACAACCTAAAGGTACGC 61.054 42.308 20.08 0.00 45.94 4.42
713 715 2.693285 CTAAAGGTACGCGCACGC 59.307 61.111 5.73 4.64 45.53 5.34
714 716 2.795389 CTAAAGGTACGCGCACGCC 61.795 63.158 5.73 5.52 45.53 5.68
719 721 4.781959 GTACGCGCACGCCCTGTA 62.782 66.667 5.73 3.39 45.53 2.74
720 722 4.053526 TACGCGCACGCCCTGTAA 62.054 61.111 5.73 0.00 45.53 2.41
721 723 3.570621 TACGCGCACGCCCTGTAAA 62.571 57.895 5.73 0.00 45.53 2.01
722 724 4.147322 CGCGCACGCCCTGTAAAG 62.147 66.667 8.75 0.00 37.98 1.85
723 725 3.047877 GCGCACGCCCTGTAAAGT 61.048 61.111 0.30 0.00 34.56 2.66
724 726 2.860293 CGCACGCCCTGTAAAGTG 59.140 61.111 0.00 0.00 37.63 3.16
725 727 1.666553 CGCACGCCCTGTAAAGTGA 60.667 57.895 0.00 0.00 36.79 3.41
726 728 1.225376 CGCACGCCCTGTAAAGTGAA 61.225 55.000 0.00 0.00 36.79 3.18
727 729 0.948678 GCACGCCCTGTAAAGTGAAA 59.051 50.000 0.00 0.00 36.79 2.69
728 730 1.069227 GCACGCCCTGTAAAGTGAAAG 60.069 52.381 0.00 0.00 36.79 2.62
729 731 2.489971 CACGCCCTGTAAAGTGAAAGA 58.510 47.619 0.00 0.00 36.79 2.52
730 732 2.480419 CACGCCCTGTAAAGTGAAAGAG 59.520 50.000 0.00 0.00 36.79 2.85
731 733 2.367567 ACGCCCTGTAAAGTGAAAGAGA 59.632 45.455 0.00 0.00 0.00 3.10
732 734 2.996621 CGCCCTGTAAAGTGAAAGAGAG 59.003 50.000 0.00 0.00 0.00 3.20
733 735 3.339141 GCCCTGTAAAGTGAAAGAGAGG 58.661 50.000 0.00 0.00 0.00 3.69
736 738 5.241662 CCCTGTAAAGTGAAAGAGAGGAAG 58.758 45.833 0.00 0.00 0.00 3.46
777 808 4.443913 ACACTTAACAACACAAACCACC 57.556 40.909 0.00 0.00 0.00 4.61
811 844 6.942163 TCCATCCTCCTCTCCAATTATAAG 57.058 41.667 0.00 0.00 0.00 1.73
835 868 1.077716 CCAACCCCGGAGACCATTC 60.078 63.158 0.73 0.00 0.00 2.67
836 869 1.077716 CAACCCCGGAGACCATTCC 60.078 63.158 0.73 0.00 0.00 3.01
837 870 1.229853 AACCCCGGAGACCATTCCT 60.230 57.895 0.73 0.00 34.96 3.36
838 871 1.272554 AACCCCGGAGACCATTCCTC 61.273 60.000 0.73 0.00 34.96 3.71
839 872 2.444256 CCCCGGAGACCATTCCTCC 61.444 68.421 0.73 0.00 45.16 4.30
879 912 0.972983 CCCCTCACGTCTCCATCACT 60.973 60.000 0.00 0.00 0.00 3.41
881 914 1.134965 CCCTCACGTCTCCATCACTTC 60.135 57.143 0.00 0.00 0.00 3.01
884 917 2.232452 CTCACGTCTCCATCACTTCCTT 59.768 50.000 0.00 0.00 0.00 3.36
896 929 1.699634 CACTTCCTTCCACTTCTCCCA 59.300 52.381 0.00 0.00 0.00 4.37
940 974 1.479709 AGCTAGCTACACTCCCACTG 58.520 55.000 17.69 0.00 0.00 3.66
955 989 1.134759 CCACTGCCATCTCTCTCACAG 60.135 57.143 0.00 0.00 0.00 3.66
958 992 0.616964 TGCCATCTCTCTCACAGGCT 60.617 55.000 0.00 0.00 42.46 4.58
959 993 0.104671 GCCATCTCTCTCACAGGCTC 59.895 60.000 0.00 0.00 39.02 4.70
960 994 1.482954 CCATCTCTCTCACAGGCTCA 58.517 55.000 0.00 0.00 0.00 4.26
962 996 1.823610 CATCTCTCTCACAGGCTCACA 59.176 52.381 0.00 0.00 0.00 3.58
964 998 0.109365 CTCTCTCACAGGCTCACACG 60.109 60.000 0.00 0.00 0.00 4.49
969 1003 2.025969 CACAGGCTCACACGCTCAG 61.026 63.158 0.00 0.00 0.00 3.35
993 1033 3.616721 ACTGCACTCCCGTCGCTT 61.617 61.111 0.00 0.00 0.00 4.68
1206 1253 3.812019 CCACCTCCGTCGTCCTCG 61.812 72.222 0.00 0.00 38.55 4.63
1456 1509 3.989787 TCGCGCTCTGCTTGGTGA 61.990 61.111 5.56 0.00 43.27 4.02
1471 1524 3.617735 TGACCGCCGTAACTGCCA 61.618 61.111 0.00 0.00 0.00 4.92
1482 1535 2.469465 TAACTGCCACTGCTGCCCTC 62.469 60.000 0.00 0.00 39.83 4.30
1497 1550 2.225467 GCCCTCGTCGGTTACTAGTAT 58.775 52.381 2.79 0.00 0.00 2.12
1505 1558 5.410746 TCGTCGGTTACTAGTATGATCATCC 59.589 44.000 12.53 0.00 0.00 3.51
1579 1639 8.880750 CGTAGTCGATTCTTGATATATACTCCA 58.119 37.037 0.00 0.00 39.71 3.86
1629 1690 6.937436 TTAGCTATCGTACTCATCAACTCA 57.063 37.500 0.00 0.00 0.00 3.41
1631 1692 5.767269 AGCTATCGTACTCATCAACTCATG 58.233 41.667 0.00 0.00 0.00 3.07
1639 1700 6.019559 CGTACTCATCAACTCATGTGTATTGG 60.020 42.308 0.00 0.00 35.97 3.16
1652 1713 3.191162 TGTGTATTGGTTCATTGCTCAGC 59.809 43.478 0.00 0.00 0.00 4.26
1752 1814 2.589014 CGCAAGAATCTTGTGCCTTTC 58.411 47.619 21.46 4.36 43.02 2.62
1764 1826 1.376466 GCCTTTCCTCAGTGCCTCA 59.624 57.895 0.00 0.00 0.00 3.86
1785 1847 9.305925 GCCTCATCCTTTTTCTTGTTATAATTG 57.694 33.333 0.00 0.00 0.00 2.32
1863 1936 3.423123 GGAGTGATTGTTTTCGCGTACTG 60.423 47.826 5.77 0.00 0.00 2.74
1919 1996 4.990543 TCATTACTCGCTTGTTTGACTG 57.009 40.909 0.00 0.00 0.00 3.51
1930 2007 1.295792 GTTTGACTGGCACGAGTGAA 58.704 50.000 7.50 0.00 0.00 3.18
1942 2019 3.751621 CACGAGTGAATGAGCCATTTTC 58.248 45.455 0.00 1.94 33.90 2.29
1954 2031 2.636768 CCATTTTCTGGCCTCGTTTC 57.363 50.000 3.32 0.00 38.47 2.78
1955 2032 2.162681 CCATTTTCTGGCCTCGTTTCT 58.837 47.619 3.32 0.00 38.47 2.52
1956 2033 2.162408 CCATTTTCTGGCCTCGTTTCTC 59.838 50.000 3.32 0.00 38.47 2.87
1957 2034 2.930826 TTTTCTGGCCTCGTTTCTCT 57.069 45.000 3.32 0.00 0.00 3.10
1958 2035 2.930826 TTTCTGGCCTCGTTTCTCTT 57.069 45.000 3.32 0.00 0.00 2.85
1959 2036 2.457366 TTCTGGCCTCGTTTCTCTTC 57.543 50.000 3.32 0.00 0.00 2.87
1960 2037 1.338107 TCTGGCCTCGTTTCTCTTCA 58.662 50.000 3.32 0.00 0.00 3.02
1961 2038 1.000955 TCTGGCCTCGTTTCTCTTCAC 59.999 52.381 3.32 0.00 0.00 3.18
1962 2039 1.001406 CTGGCCTCGTTTCTCTTCACT 59.999 52.381 3.32 0.00 0.00 3.41
1963 2040 1.416401 TGGCCTCGTTTCTCTTCACTT 59.584 47.619 3.32 0.00 0.00 3.16
1964 2041 1.801178 GGCCTCGTTTCTCTTCACTTG 59.199 52.381 0.00 0.00 0.00 3.16
1965 2042 2.484889 GCCTCGTTTCTCTTCACTTGT 58.515 47.619 0.00 0.00 0.00 3.16
1966 2043 3.554337 GGCCTCGTTTCTCTTCACTTGTA 60.554 47.826 0.00 0.00 0.00 2.41
1967 2044 3.429207 GCCTCGTTTCTCTTCACTTGTAC 59.571 47.826 0.00 0.00 0.00 2.90
1968 2045 3.669122 CCTCGTTTCTCTTCACTTGTACG 59.331 47.826 0.00 0.00 0.00 3.67
1969 2046 4.288531 CTCGTTTCTCTTCACTTGTACGT 58.711 43.478 0.00 0.00 0.00 3.57
1970 2047 5.422666 TCGTTTCTCTTCACTTGTACGTA 57.577 39.130 0.00 0.00 0.00 3.57
1971 2048 5.446709 TCGTTTCTCTTCACTTGTACGTAG 58.553 41.667 0.00 0.00 0.00 3.51
1972 2049 5.237127 TCGTTTCTCTTCACTTGTACGTAGA 59.763 40.000 0.00 0.00 0.00 2.59
1973 2050 5.911280 CGTTTCTCTTCACTTGTACGTAGAA 59.089 40.000 4.95 4.95 0.00 2.10
1974 2051 6.581542 CGTTTCTCTTCACTTGTACGTAGAAT 59.418 38.462 5.53 0.00 0.00 2.40
1975 2052 7.409449 CGTTTCTCTTCACTTGTACGTAGAATG 60.409 40.741 5.53 7.00 0.00 2.67
1976 2053 5.950883 TCTCTTCACTTGTACGTAGAATGG 58.049 41.667 5.53 1.82 0.00 3.16
1977 2054 5.708697 TCTCTTCACTTGTACGTAGAATGGA 59.291 40.000 5.53 4.14 0.00 3.41
1978 2055 5.706916 TCTTCACTTGTACGTAGAATGGAC 58.293 41.667 5.53 0.00 0.00 4.02
1986 2063 8.932791 ACTTGTACGTAGAATGGACAAAATTAG 58.067 33.333 5.53 0.00 30.14 1.73
2001 2078 4.434713 AAATTAGTTTGATCGGTGCACC 57.565 40.909 26.78 26.78 0.00 5.01
2002 2079 2.552599 TTAGTTTGATCGGTGCACCA 57.447 45.000 34.16 21.66 35.14 4.17
2003 2080 1.803334 TAGTTTGATCGGTGCACCAC 58.197 50.000 34.16 23.00 35.14 4.16
2004 2081 0.179032 AGTTTGATCGGTGCACCACA 60.179 50.000 34.16 25.75 35.86 4.17
2005 2082 0.881118 GTTTGATCGGTGCACCACAT 59.119 50.000 34.16 24.70 35.86 3.21
2015 2092 2.346803 GTGCACCACATACGTTGAGAT 58.653 47.619 5.22 0.00 34.08 2.75
2023 2100 7.201574 GCACCACATACGTTGAGATAATTAACA 60.202 37.037 0.00 0.00 0.00 2.41
2046 2123 8.915871 ACAATAATACATTACGTTGTACGAGT 57.084 30.769 6.19 2.28 46.05 4.18
2053 2130 7.827819 ACATTACGTTGTACGAGTACTACTA 57.172 36.000 19.70 11.66 46.05 1.82
2056 2133 4.499183 ACGTTGTACGAGTACTACTAGCT 58.501 43.478 19.70 0.00 46.05 3.32
2094 2171 1.717645 CAAACTTAGTCGGTCGGTTCG 59.282 52.381 0.00 0.00 0.00 3.95
2096 2173 0.954452 ACTTAGTCGGTCGGTTCGTT 59.046 50.000 0.00 0.00 0.00 3.85
2097 2174 1.334054 CTTAGTCGGTCGGTTCGTTG 58.666 55.000 0.00 0.00 0.00 4.10
2099 2176 0.950836 TAGTCGGTCGGTTCGTTGAA 59.049 50.000 0.00 0.00 0.00 2.69
2106 2183 2.096565 GGTCGGTTCGTTGAAAAGCTAC 60.097 50.000 0.00 0.00 0.00 3.58
2109 2186 4.089636 GTCGGTTCGTTGAAAAGCTACTAG 59.910 45.833 0.00 0.00 0.00 2.57
2162 2247 2.110213 TTGACGTGGAAAGGCGCT 59.890 55.556 7.64 0.00 0.00 5.92
2165 2250 1.206831 GACGTGGAAAGGCGCTTTC 59.793 57.895 18.26 18.26 46.24 2.62
2169 2254 1.671054 TGGAAAGGCGCTTTCTCCG 60.671 57.895 22.65 0.00 46.20 4.63
2227 2322 4.485163 AGTTGTGTGTTGCAAGAAAGTTC 58.515 39.130 0.00 0.00 0.00 3.01
2241 2336 0.037605 AAGTTCCCGTGTGGATCGTC 60.038 55.000 0.00 0.00 44.66 4.20
2348 2450 0.250597 GGCTACGTTGGAGTTTGGGT 60.251 55.000 0.00 0.00 0.00 4.51
2376 2486 6.072286 AGGAAACAAAATACTGTCATGCTGAG 60.072 38.462 0.00 0.00 0.00 3.35
2387 2497 3.020274 GTCATGCTGAGTGAGTAGGAGA 58.980 50.000 0.00 0.00 26.84 3.71
2388 2498 3.066621 GTCATGCTGAGTGAGTAGGAGAG 59.933 52.174 0.00 0.00 26.84 3.20
2415 2528 3.569916 CATGCATCATGCTTGGAGC 57.430 52.632 16.15 5.19 45.31 4.70
2416 2529 0.032130 CATGCATCATGCTTGGAGCC 59.968 55.000 16.15 0.00 45.31 4.70
2433 2547 0.249322 GCCCGAGTACGTACATGCAT 60.249 55.000 26.55 6.30 37.88 3.96
2451 2565 2.415090 GCATACGTACGTGTCCAAGAGT 60.415 50.000 30.25 1.85 0.00 3.24
2452 2566 2.975410 TACGTACGTGTCCAAGAGTG 57.025 50.000 30.25 0.00 0.00 3.51
2457 2571 1.335132 ACGTGTCCAAGAGTGGGTGT 61.335 55.000 0.00 0.00 46.01 4.16
2462 2576 4.142038 GTGTCCAAGAGTGGGTGTATTTT 58.858 43.478 0.00 0.00 46.01 1.82
2463 2577 4.583073 GTGTCCAAGAGTGGGTGTATTTTT 59.417 41.667 0.00 0.00 46.01 1.94
2464 2578 4.825085 TGTCCAAGAGTGGGTGTATTTTTC 59.175 41.667 0.00 0.00 46.01 2.29
2465 2579 5.070685 GTCCAAGAGTGGGTGTATTTTTCT 58.929 41.667 0.00 0.00 46.01 2.52
2466 2580 6.183361 TGTCCAAGAGTGGGTGTATTTTTCTA 60.183 38.462 0.00 0.00 46.01 2.10
2467 2581 6.371825 GTCCAAGAGTGGGTGTATTTTTCTAG 59.628 42.308 0.00 0.00 46.01 2.43
2468 2582 5.123979 CCAAGAGTGGGTGTATTTTTCTAGC 59.876 44.000 0.00 0.00 41.77 3.42
2469 2583 5.499004 AGAGTGGGTGTATTTTTCTAGCA 57.501 39.130 0.00 0.00 0.00 3.49
2470 2584 5.876357 AGAGTGGGTGTATTTTTCTAGCAA 58.124 37.500 0.00 0.00 0.00 3.91
2471 2585 6.303839 AGAGTGGGTGTATTTTTCTAGCAAA 58.696 36.000 0.00 0.00 0.00 3.68
2472 2586 6.775629 AGAGTGGGTGTATTTTTCTAGCAAAA 59.224 34.615 2.73 2.73 0.00 2.44
2473 2587 7.286775 AGAGTGGGTGTATTTTTCTAGCAAAAA 59.713 33.333 4.39 9.15 34.15 1.94
2493 2607 5.343307 AAAAAGAAGAAGTTGGTGCATGT 57.657 34.783 0.00 0.00 0.00 3.21
2494 2608 6.463995 AAAAAGAAGAAGTTGGTGCATGTA 57.536 33.333 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.080995 GTTCTCTGTGCTAGCAGGCG 61.081 60.000 20.03 9.56 37.12 5.52
3 4 0.742635 GGTTCTCTGTGCTAGCAGGC 60.743 60.000 20.03 8.15 37.12 4.85
6 7 1.901833 TCATGGTTCTCTGTGCTAGCA 59.098 47.619 14.93 14.93 0.00 3.49
7 8 2.093764 AGTCATGGTTCTCTGTGCTAGC 60.094 50.000 8.10 8.10 0.00 3.42
8 9 3.883830 AGTCATGGTTCTCTGTGCTAG 57.116 47.619 0.00 0.00 0.00 3.42
9 10 3.367395 CGAAGTCATGGTTCTCTGTGCTA 60.367 47.826 0.00 0.00 0.00 3.49
10 11 2.611473 CGAAGTCATGGTTCTCTGTGCT 60.611 50.000 0.00 0.00 0.00 4.40
11 12 1.728971 CGAAGTCATGGTTCTCTGTGC 59.271 52.381 0.00 0.00 0.00 4.57
12 13 2.341257 CCGAAGTCATGGTTCTCTGTG 58.659 52.381 0.00 0.00 0.00 3.66
13 14 1.338200 GCCGAAGTCATGGTTCTCTGT 60.338 52.381 0.00 0.00 0.00 3.41
14 15 1.338105 TGCCGAAGTCATGGTTCTCTG 60.338 52.381 0.00 0.00 0.00 3.35
15 16 0.976641 TGCCGAAGTCATGGTTCTCT 59.023 50.000 0.00 0.00 0.00 3.10
16 17 1.667724 CATGCCGAAGTCATGGTTCTC 59.332 52.381 0.00 0.00 40.55 2.87
17 18 1.742761 CATGCCGAAGTCATGGTTCT 58.257 50.000 0.00 0.00 40.55 3.01
22 23 1.012086 CTCACCATGCCGAAGTCATG 58.988 55.000 0.00 0.00 44.26 3.07
23 24 0.107508 CCTCACCATGCCGAAGTCAT 60.108 55.000 0.00 0.00 0.00 3.06
24 25 1.296392 CCTCACCATGCCGAAGTCA 59.704 57.895 0.00 0.00 0.00 3.41
25 26 1.021390 CACCTCACCATGCCGAAGTC 61.021 60.000 0.00 0.00 0.00 3.01
26 27 1.003355 CACCTCACCATGCCGAAGT 60.003 57.895 0.00 0.00 0.00 3.01
27 28 1.003355 ACACCTCACCATGCCGAAG 60.003 57.895 0.00 0.00 0.00 3.79
28 29 1.302431 CACACCTCACCATGCCGAA 60.302 57.895 0.00 0.00 0.00 4.30
29 30 2.347114 CACACCTCACCATGCCGA 59.653 61.111 0.00 0.00 0.00 5.54
30 31 2.747460 CCACACCTCACCATGCCG 60.747 66.667 0.00 0.00 0.00 5.69
31 32 1.675641 GTCCACACCTCACCATGCC 60.676 63.158 0.00 0.00 0.00 4.40
32 33 0.957395 CTGTCCACACCTCACCATGC 60.957 60.000 0.00 0.00 0.00 4.06
33 34 0.957395 GCTGTCCACACCTCACCATG 60.957 60.000 0.00 0.00 0.00 3.66
34 35 1.376466 GCTGTCCACACCTCACCAT 59.624 57.895 0.00 0.00 0.00 3.55
35 36 2.828868 GCTGTCCACACCTCACCA 59.171 61.111 0.00 0.00 0.00 4.17
36 37 2.357517 CGCTGTCCACACCTCACC 60.358 66.667 0.00 0.00 0.00 4.02
37 38 3.044305 GCGCTGTCCACACCTCAC 61.044 66.667 0.00 0.00 0.00 3.51
38 39 4.314440 GGCGCTGTCCACACCTCA 62.314 66.667 7.64 0.00 0.00 3.86
55 56 3.757248 CTTCCCTTCCCATCGCCCG 62.757 68.421 0.00 0.00 0.00 6.13
56 57 2.193248 CTTCCCTTCCCATCGCCC 59.807 66.667 0.00 0.00 0.00 6.13
62 63 0.112412 GAAGCCAACTTCCCTTCCCA 59.888 55.000 0.00 0.00 45.60 4.37
74 75 0.537143 AGTCGCCACATTGAAGCCAA 60.537 50.000 0.00 0.00 36.61 4.52
86 87 0.246635 GAAGCTTACTCCAGTCGCCA 59.753 55.000 0.00 0.00 0.00 5.69
101 102 4.755614 ACGCGACGACCGAGAAGC 62.756 66.667 15.93 0.00 40.62 3.86
152 153 1.369091 ATGCCGGTCAAAGCGATGTC 61.369 55.000 1.90 0.00 42.41 3.06
153 154 1.369091 GATGCCGGTCAAAGCGATGT 61.369 55.000 1.90 0.00 42.41 3.06
200 201 8.989980 GCCACATATGTTACTAATACTCTTTCC 58.010 37.037 5.37 0.00 0.00 3.13
203 204 9.712305 GATGCCACATATGTTACTAATACTCTT 57.288 33.333 5.37 0.00 0.00 2.85
204 205 8.870116 TGATGCCACATATGTTACTAATACTCT 58.130 33.333 5.37 0.00 0.00 3.24
205 206 9.489084 TTGATGCCACATATGTTACTAATACTC 57.511 33.333 5.37 0.00 0.00 2.59
211 212 8.783093 GCTAATTTGATGCCACATATGTTACTA 58.217 33.333 5.37 0.00 0.00 1.82
212 213 7.285172 TGCTAATTTGATGCCACATATGTTACT 59.715 33.333 5.37 0.00 0.00 2.24
213 214 7.424803 TGCTAATTTGATGCCACATATGTTAC 58.575 34.615 5.37 1.59 0.00 2.50
214 215 7.579761 TGCTAATTTGATGCCACATATGTTA 57.420 32.000 5.37 0.00 0.00 2.41
215 216 6.468333 TGCTAATTTGATGCCACATATGTT 57.532 33.333 5.37 0.00 0.00 2.71
222 223 9.695526 TTTCATAATATGCTAATTTGATGCCAC 57.304 29.630 0.00 0.00 0.00 5.01
225 226 9.414295 TGCTTTCATAATATGCTAATTTGATGC 57.586 29.630 0.00 0.00 0.00 3.91
279 280 9.784531 ACAGTAGCAGCATTTATCATACTAAAT 57.215 29.630 0.00 0.00 32.76 1.40
280 281 9.613428 AACAGTAGCAGCATTTATCATACTAAA 57.387 29.630 0.00 0.00 0.00 1.85
281 282 9.261180 GAACAGTAGCAGCATTTATCATACTAA 57.739 33.333 0.00 0.00 0.00 2.24
282 283 7.872993 GGAACAGTAGCAGCATTTATCATACTA 59.127 37.037 0.00 0.00 0.00 1.82
283 284 6.708054 GGAACAGTAGCAGCATTTATCATACT 59.292 38.462 0.00 0.00 0.00 2.12
284 285 6.708054 AGGAACAGTAGCAGCATTTATCATAC 59.292 38.462 0.00 0.00 0.00 2.39
285 286 6.830912 AGGAACAGTAGCAGCATTTATCATA 58.169 36.000 0.00 0.00 0.00 2.15
286 287 5.688807 AGGAACAGTAGCAGCATTTATCAT 58.311 37.500 0.00 0.00 0.00 2.45
287 288 5.102953 AGGAACAGTAGCAGCATTTATCA 57.897 39.130 0.00 0.00 0.00 2.15
291 292 9.799106 ATTTATATAGGAACAGTAGCAGCATTT 57.201 29.630 0.00 0.00 0.00 2.32
320 321 9.788960 GTCAAAGTCTTAAAACTTCAATCAACT 57.211 29.630 0.00 0.00 38.52 3.16
321 322 9.788960 AGTCAAAGTCTTAAAACTTCAATCAAC 57.211 29.630 0.00 0.00 38.52 3.18
362 363 9.256477 TCCATTCGTCATAAATAAGTGTACATC 57.744 33.333 0.00 0.00 0.00 3.06
363 364 9.607988 TTCCATTCGTCATAAATAAGTGTACAT 57.392 29.630 0.00 0.00 0.00 2.29
364 365 9.607988 ATTCCATTCGTCATAAATAAGTGTACA 57.392 29.630 0.00 0.00 0.00 2.90
367 368 9.607988 TGTATTCCATTCGTCATAAATAAGTGT 57.392 29.630 0.00 0.00 0.00 3.55
377 378 9.778741 AACATAGTATTGTATTCCATTCGTCAT 57.221 29.630 0.00 0.00 0.00 3.06
378 379 9.040939 CAACATAGTATTGTATTCCATTCGTCA 57.959 33.333 0.00 0.00 0.00 4.35
379 380 9.042008 ACAACATAGTATTGTATTCCATTCGTC 57.958 33.333 0.00 0.00 38.51 4.20
387 389 8.528917 TCGCCATACAACATAGTATTGTATTC 57.471 34.615 7.48 3.43 46.34 1.75
393 395 6.565811 CGCATTTCGCCATACAACATAGTATT 60.566 38.462 0.00 0.00 37.30 1.89
395 397 4.210328 CGCATTTCGCCATACAACATAGTA 59.790 41.667 0.00 0.00 37.30 1.82
396 398 3.002246 CGCATTTCGCCATACAACATAGT 59.998 43.478 0.00 0.00 37.30 2.12
397 399 3.002246 ACGCATTTCGCCATACAACATAG 59.998 43.478 0.00 0.00 43.23 2.23
399 401 1.742831 ACGCATTTCGCCATACAACAT 59.257 42.857 0.00 0.00 43.23 2.71
400 402 1.160989 ACGCATTTCGCCATACAACA 58.839 45.000 0.00 0.00 43.23 3.33
401 403 2.700694 GTACGCATTTCGCCATACAAC 58.299 47.619 0.00 0.00 43.23 3.32
405 407 1.589320 GTTCGTACGCATTTCGCCATA 59.411 47.619 11.24 0.00 43.23 2.74
414 416 1.068333 ACGGTAACTGTTCGTACGCAT 60.068 47.619 11.24 0.00 35.23 4.73
415 417 0.310543 ACGGTAACTGTTCGTACGCA 59.689 50.000 11.24 2.61 35.23 5.24
416 418 0.704551 CACGGTAACTGTTCGTACGC 59.295 55.000 11.24 0.00 35.23 4.42
418 420 2.053627 CCACACGGTAACTGTTCGTAC 58.946 52.381 6.91 0.00 35.23 3.67
419 421 1.952990 TCCACACGGTAACTGTTCGTA 59.047 47.619 6.91 0.00 35.23 3.43
420 422 0.746063 TCCACACGGTAACTGTTCGT 59.254 50.000 0.00 0.00 37.64 3.85
421 423 1.724623 CATCCACACGGTAACTGTTCG 59.275 52.381 0.00 0.00 0.00 3.95
422 424 1.463444 GCATCCACACGGTAACTGTTC 59.537 52.381 0.00 0.00 0.00 3.18
423 425 1.071699 AGCATCCACACGGTAACTGTT 59.928 47.619 0.00 0.00 0.00 3.16
424 426 0.685097 AGCATCCACACGGTAACTGT 59.315 50.000 0.00 0.00 0.00 3.55
425 427 1.808411 AAGCATCCACACGGTAACTG 58.192 50.000 0.00 0.00 0.00 3.16
426 428 2.561478 AAAGCATCCACACGGTAACT 57.439 45.000 0.00 0.00 0.00 2.24
427 429 3.068560 TGTAAAGCATCCACACGGTAAC 58.931 45.455 0.00 0.00 0.00 2.50
428 430 3.331150 CTGTAAAGCATCCACACGGTAA 58.669 45.455 0.00 0.00 0.00 2.85
429 431 2.354303 CCTGTAAAGCATCCACACGGTA 60.354 50.000 0.00 0.00 0.00 4.02
430 432 1.610624 CCTGTAAAGCATCCACACGGT 60.611 52.381 0.00 0.00 0.00 4.83
431 433 1.086696 CCTGTAAAGCATCCACACGG 58.913 55.000 0.00 0.00 0.00 4.94
432 434 1.464608 CACCTGTAAAGCATCCACACG 59.535 52.381 0.00 0.00 0.00 4.49
433 435 2.504367 ACACCTGTAAAGCATCCACAC 58.496 47.619 0.00 0.00 0.00 3.82
434 436 2.949177 ACACCTGTAAAGCATCCACA 57.051 45.000 0.00 0.00 0.00 4.17
435 437 4.037446 TCAAAACACCTGTAAAGCATCCAC 59.963 41.667 0.00 0.00 0.00 4.02
436 438 4.211125 TCAAAACACCTGTAAAGCATCCA 58.789 39.130 0.00 0.00 0.00 3.41
437 439 4.321230 CCTCAAAACACCTGTAAAGCATCC 60.321 45.833 0.00 0.00 0.00 3.51
438 440 4.321230 CCCTCAAAACACCTGTAAAGCATC 60.321 45.833 0.00 0.00 0.00 3.91
439 441 3.573967 CCCTCAAAACACCTGTAAAGCAT 59.426 43.478 0.00 0.00 0.00 3.79
440 442 2.955660 CCCTCAAAACACCTGTAAAGCA 59.044 45.455 0.00 0.00 0.00 3.91
451 453 2.445145 TCCAATCCTGACCCTCAAAACA 59.555 45.455 0.00 0.00 0.00 2.83
463 465 1.138568 AGGGCATCTCTCCAATCCTG 58.861 55.000 0.00 0.00 0.00 3.86
464 466 1.138568 CAGGGCATCTCTCCAATCCT 58.861 55.000 0.00 0.00 0.00 3.24
471 473 2.884639 GAGTAGTCTCAGGGCATCTCTC 59.115 54.545 0.00 0.00 40.18 3.20
530 532 3.858238 GCGTAGGACTTGTAATCTGTGAC 59.142 47.826 0.00 0.00 0.00 3.67
531 533 3.427098 CGCGTAGGACTTGTAATCTGTGA 60.427 47.826 0.00 0.00 0.00 3.58
536 538 5.049129 AGGTATACGCGTAGGACTTGTAATC 60.049 44.000 24.78 9.83 0.00 1.75
537 539 4.823989 AGGTATACGCGTAGGACTTGTAAT 59.176 41.667 24.78 7.08 0.00 1.89
538 540 4.199310 AGGTATACGCGTAGGACTTGTAA 58.801 43.478 24.78 0.00 0.00 2.41
539 541 3.808728 AGGTATACGCGTAGGACTTGTA 58.191 45.455 24.78 7.25 0.00 2.41
541 543 4.060900 TCTAGGTATACGCGTAGGACTTG 58.939 47.826 24.78 19.54 0.00 3.16
544 546 4.671250 GCAATCTAGGTATACGCGTAGGAC 60.671 50.000 24.78 22.22 0.00 3.85
546 548 3.427233 GGCAATCTAGGTATACGCGTAGG 60.427 52.174 24.78 9.83 0.00 3.18
547 549 3.189910 TGGCAATCTAGGTATACGCGTAG 59.810 47.826 24.78 11.63 0.00 3.51
548 550 3.148412 TGGCAATCTAGGTATACGCGTA 58.852 45.455 22.94 22.94 0.00 4.42
550 552 2.030185 ACTGGCAATCTAGGTATACGCG 60.030 50.000 3.53 3.53 0.00 6.01
551 553 3.662247 ACTGGCAATCTAGGTATACGC 57.338 47.619 0.00 0.00 0.00 4.42
552 554 7.870954 TGATAAAACTGGCAATCTAGGTATACG 59.129 37.037 0.00 0.00 0.00 3.06
553 555 8.989980 GTGATAAAACTGGCAATCTAGGTATAC 58.010 37.037 0.00 0.00 0.00 1.47
554 556 8.154856 GGTGATAAAACTGGCAATCTAGGTATA 58.845 37.037 0.00 0.00 0.00 1.47
555 557 6.998673 GGTGATAAAACTGGCAATCTAGGTAT 59.001 38.462 0.00 0.00 0.00 2.73
556 558 6.354130 GGTGATAAAACTGGCAATCTAGGTA 58.646 40.000 0.00 0.00 0.00 3.08
557 559 5.193679 GGTGATAAAACTGGCAATCTAGGT 58.806 41.667 0.00 0.00 0.00 3.08
558 560 4.580580 GGGTGATAAAACTGGCAATCTAGG 59.419 45.833 0.00 0.00 0.00 3.02
559 561 5.440610 AGGGTGATAAAACTGGCAATCTAG 58.559 41.667 0.00 0.00 0.00 2.43
560 562 5.450818 AGGGTGATAAAACTGGCAATCTA 57.549 39.130 0.00 0.00 0.00 1.98
561 563 4.322057 AGGGTGATAAAACTGGCAATCT 57.678 40.909 0.00 0.00 0.00 2.40
562 564 6.715347 ATTAGGGTGATAAAACTGGCAATC 57.285 37.500 0.00 0.00 0.00 2.67
563 565 9.875708 TTATATTAGGGTGATAAAACTGGCAAT 57.124 29.630 0.00 0.00 0.00 3.56
564 566 9.702253 TTTATATTAGGGTGATAAAACTGGCAA 57.298 29.630 0.00 0.00 0.00 4.52
565 567 9.127277 GTTTATATTAGGGTGATAAAACTGGCA 57.873 33.333 0.00 0.00 29.33 4.92
566 568 9.350951 AGTTTATATTAGGGTGATAAAACTGGC 57.649 33.333 0.00 0.00 29.33 4.85
611 613 9.136323 ACTTCAGATGTTCTATTTTCAAAAGGT 57.864 29.630 0.00 0.00 0.00 3.50
612 614 9.971922 AACTTCAGATGTTCTATTTTCAAAAGG 57.028 29.630 0.00 0.00 0.00 3.11
664 666 8.932791 CAATTTGACTAACCTAATACAAGTCGT 58.067 33.333 0.00 0.00 39.52 4.34
665 667 9.146984 TCAATTTGACTAACCTAATACAAGTCG 57.853 33.333 0.00 0.00 39.52 4.18
695 697 2.795389 GCGTGCGCGTACCTTTAGG 61.795 63.158 21.71 7.50 40.81 2.69
696 698 2.693285 GCGTGCGCGTACCTTTAG 59.307 61.111 21.71 8.24 40.81 1.85
697 699 2.810458 GGCGTGCGCGTACCTTTA 60.810 61.111 21.71 0.00 43.06 1.85
702 704 4.781959 TACAGGGCGTGCGCGTAC 62.782 66.667 22.18 17.94 43.06 3.67
703 705 3.570621 TTTACAGGGCGTGCGCGTA 62.571 57.895 22.18 0.00 43.06 4.42
704 706 4.973055 TTTACAGGGCGTGCGCGT 62.973 61.111 22.18 2.94 43.06 6.01
705 707 4.147322 CTTTACAGGGCGTGCGCG 62.147 66.667 16.86 16.86 43.06 6.86
706 708 3.047877 ACTTTACAGGGCGTGCGC 61.048 61.111 7.17 8.17 41.06 6.09
707 709 1.225376 TTCACTTTACAGGGCGTGCG 61.225 55.000 7.17 0.00 0.00 5.34
708 710 0.948678 TTTCACTTTACAGGGCGTGC 59.051 50.000 7.17 0.00 0.00 5.34
709 711 2.480419 CTCTTTCACTTTACAGGGCGTG 59.520 50.000 5.50 5.50 0.00 5.34
710 712 2.367567 TCTCTTTCACTTTACAGGGCGT 59.632 45.455 0.00 0.00 0.00 5.68
711 713 2.996621 CTCTCTTTCACTTTACAGGGCG 59.003 50.000 0.00 0.00 0.00 6.13
712 714 3.008049 TCCTCTCTTTCACTTTACAGGGC 59.992 47.826 0.00 0.00 0.00 5.19
713 715 4.891992 TCCTCTCTTTCACTTTACAGGG 57.108 45.455 0.00 0.00 0.00 4.45
714 716 5.859495 ACTTCCTCTCTTTCACTTTACAGG 58.141 41.667 0.00 0.00 0.00 4.00
715 717 6.588373 GCTACTTCCTCTCTTTCACTTTACAG 59.412 42.308 0.00 0.00 0.00 2.74
716 718 6.041637 TGCTACTTCCTCTCTTTCACTTTACA 59.958 38.462 0.00 0.00 0.00 2.41
717 719 6.456501 TGCTACTTCCTCTCTTTCACTTTAC 58.543 40.000 0.00 0.00 0.00 2.01
718 720 6.665992 TGCTACTTCCTCTCTTTCACTTTA 57.334 37.500 0.00 0.00 0.00 1.85
719 721 5.552870 TGCTACTTCCTCTCTTTCACTTT 57.447 39.130 0.00 0.00 0.00 2.66
720 722 5.486526 CATGCTACTTCCTCTCTTTCACTT 58.513 41.667 0.00 0.00 0.00 3.16
721 723 4.622695 GCATGCTACTTCCTCTCTTTCACT 60.623 45.833 11.37 0.00 0.00 3.41
722 724 3.620821 GCATGCTACTTCCTCTCTTTCAC 59.379 47.826 11.37 0.00 0.00 3.18
723 725 3.261643 TGCATGCTACTTCCTCTCTTTCA 59.738 43.478 20.33 0.00 0.00 2.69
724 726 3.866651 TGCATGCTACTTCCTCTCTTTC 58.133 45.455 20.33 0.00 0.00 2.62
725 727 3.988976 TGCATGCTACTTCCTCTCTTT 57.011 42.857 20.33 0.00 0.00 2.52
726 728 4.500499 AATGCATGCTACTTCCTCTCTT 57.500 40.909 20.33 0.00 0.00 2.85
727 729 4.500499 AAATGCATGCTACTTCCTCTCT 57.500 40.909 20.33 0.00 0.00 3.10
728 730 4.213059 GCTAAATGCATGCTACTTCCTCTC 59.787 45.833 20.33 0.00 42.31 3.20
729 731 4.133078 GCTAAATGCATGCTACTTCCTCT 58.867 43.478 20.33 0.00 42.31 3.69
730 732 4.480386 GCTAAATGCATGCTACTTCCTC 57.520 45.455 20.33 0.00 42.31 3.71
777 808 0.468771 GAGGATGGAAAGGCATGGGG 60.469 60.000 0.00 0.00 0.00 4.96
835 868 0.998945 AGAGGAGAGGAGAGGGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
836 869 0.933700 AAGAGGAGAGGAGAGGGGAG 59.066 60.000 0.00 0.00 0.00 4.30
837 870 0.930726 GAAGAGGAGAGGAGAGGGGA 59.069 60.000 0.00 0.00 0.00 4.81
838 871 0.933700 AGAAGAGGAGAGGAGAGGGG 59.066 60.000 0.00 0.00 0.00 4.79
839 872 2.666317 GAAGAAGAGGAGAGGAGAGGG 58.334 57.143 0.00 0.00 0.00 4.30
879 912 1.814429 TGTGGGAGAAGTGGAAGGAA 58.186 50.000 0.00 0.00 0.00 3.36
881 914 2.887151 AATGTGGGAGAAGTGGAAGG 57.113 50.000 0.00 0.00 0.00 3.46
884 917 3.392947 TGTGTAAATGTGGGAGAAGTGGA 59.607 43.478 0.00 0.00 0.00 4.02
896 929 0.948678 GTGCGGTGGTGTGTAAATGT 59.051 50.000 0.00 0.00 0.00 2.71
928 962 1.195115 GAGATGGCAGTGGGAGTGTA 58.805 55.000 0.00 0.00 0.00 2.90
940 974 0.104671 GAGCCTGTGAGAGAGATGGC 59.895 60.000 0.00 0.00 40.54 4.40
955 989 3.418068 GTGCTGAGCGTGTGAGCC 61.418 66.667 0.00 0.00 38.01 4.70
993 1033 3.078196 TAGGACGCCATGGCCGAA 61.078 61.111 30.79 9.40 37.98 4.30
1251 1298 1.839894 GGGAATGTAGCCCCCAGAG 59.160 63.158 0.00 0.00 39.81 3.35
1442 1495 3.114616 CGGTCACCAAGCAGAGCG 61.115 66.667 0.00 0.00 46.96 5.03
1443 1496 3.426568 GCGGTCACCAAGCAGAGC 61.427 66.667 0.00 0.00 0.00 4.09
1456 1509 3.622826 AGTGGCAGTTACGGCGGT 61.623 61.111 13.24 1.39 0.00 5.68
1482 1535 5.180680 TGGATGATCATACTAGTAACCGACG 59.819 44.000 18.82 0.00 0.00 5.12
1497 1550 7.524532 GCTTAGCTAGTAACTGATGGATGATCA 60.525 40.741 0.00 0.00 38.87 2.92
1542 1602 1.522668 TCGACTACGAACGGAAAGGA 58.477 50.000 0.00 0.00 45.74 3.36
1577 1637 4.314522 TGGTGCCCCATTATACATATGG 57.685 45.455 7.80 0.00 35.17 2.74
1629 1690 4.142315 GCTGAGCAATGAACCAATACACAT 60.142 41.667 0.00 0.00 0.00 3.21
1631 1692 3.441572 AGCTGAGCAATGAACCAATACAC 59.558 43.478 7.39 0.00 0.00 2.90
1639 1700 0.886563 AAGCCAGCTGAGCAATGAAC 59.113 50.000 23.46 0.00 0.00 3.18
1652 1713 2.154462 CACTCACTACCCAAAAGCCAG 58.846 52.381 0.00 0.00 0.00 4.85
1752 1814 2.503895 AAAAGGATGAGGCACTGAGG 57.496 50.000 0.00 0.00 41.55 3.86
1785 1847 2.933495 TGCCACTACACGAGTACATC 57.067 50.000 0.00 0.00 35.64 3.06
1863 1936 0.454452 GAAATGTTCGGTCCAAGCGC 60.454 55.000 0.00 0.00 39.21 5.92
1866 1939 3.563808 TGTGAAGAAATGTTCGGTCCAAG 59.436 43.478 0.00 0.00 34.02 3.61
1919 1996 0.745845 ATGGCTCATTCACTCGTGCC 60.746 55.000 0.00 0.00 41.19 5.01
1942 2019 1.001406 AGTGAAGAGAAACGAGGCCAG 59.999 52.381 5.01 0.00 0.00 4.85
1950 2027 7.148787 CCATTCTACGTACAAGTGAAGAGAAAC 60.149 40.741 0.00 0.00 0.00 2.78
1951 2028 6.866770 CCATTCTACGTACAAGTGAAGAGAAA 59.133 38.462 0.00 0.00 0.00 2.52
1952 2029 6.208007 TCCATTCTACGTACAAGTGAAGAGAA 59.792 38.462 0.00 0.00 0.00 2.87
1953 2030 5.708697 TCCATTCTACGTACAAGTGAAGAGA 59.291 40.000 0.00 0.00 0.00 3.10
1954 2031 5.800941 GTCCATTCTACGTACAAGTGAAGAG 59.199 44.000 0.00 0.00 0.00 2.85
1955 2032 5.242171 TGTCCATTCTACGTACAAGTGAAGA 59.758 40.000 0.00 0.00 0.00 2.87
1956 2033 5.466819 TGTCCATTCTACGTACAAGTGAAG 58.533 41.667 0.00 0.00 0.00 3.02
1957 2034 5.456548 TGTCCATTCTACGTACAAGTGAA 57.543 39.130 0.00 0.00 0.00 3.18
1958 2035 5.456548 TTGTCCATTCTACGTACAAGTGA 57.543 39.130 0.00 0.00 0.00 3.41
1959 2036 6.533819 TTTTGTCCATTCTACGTACAAGTG 57.466 37.500 0.00 0.00 32.18 3.16
1960 2037 7.739498 AATTTTGTCCATTCTACGTACAAGT 57.261 32.000 0.00 0.00 32.18 3.16
1961 2038 8.932791 ACTAATTTTGTCCATTCTACGTACAAG 58.067 33.333 0.00 0.00 32.18 3.16
1962 2039 8.836268 ACTAATTTTGTCCATTCTACGTACAA 57.164 30.769 0.00 0.00 0.00 2.41
1963 2040 8.836268 AACTAATTTTGTCCATTCTACGTACA 57.164 30.769 0.00 0.00 0.00 2.90
1964 2041 9.537848 CAAACTAATTTTGTCCATTCTACGTAC 57.462 33.333 0.00 0.00 39.96 3.67
1965 2042 9.491675 TCAAACTAATTTTGTCCATTCTACGTA 57.508 29.630 0.00 0.00 44.47 3.57
1966 2043 8.385898 TCAAACTAATTTTGTCCATTCTACGT 57.614 30.769 0.00 0.00 44.47 3.57
1967 2044 9.490663 GATCAAACTAATTTTGTCCATTCTACG 57.509 33.333 0.00 0.00 44.47 3.51
1968 2045 9.490663 CGATCAAACTAATTTTGTCCATTCTAC 57.509 33.333 0.00 0.00 44.47 2.59
1969 2046 8.673711 CCGATCAAACTAATTTTGTCCATTCTA 58.326 33.333 0.00 0.00 44.47 2.10
1970 2047 7.176690 ACCGATCAAACTAATTTTGTCCATTCT 59.823 33.333 0.00 0.00 44.47 2.40
1971 2048 7.273381 CACCGATCAAACTAATTTTGTCCATTC 59.727 37.037 0.00 0.00 44.47 2.67
1972 2049 7.090173 CACCGATCAAACTAATTTTGTCCATT 58.910 34.615 0.00 0.00 44.47 3.16
1973 2050 6.620678 CACCGATCAAACTAATTTTGTCCAT 58.379 36.000 0.00 0.00 44.47 3.41
1974 2051 5.563867 GCACCGATCAAACTAATTTTGTCCA 60.564 40.000 0.00 0.00 44.47 4.02
1975 2052 4.857037 GCACCGATCAAACTAATTTTGTCC 59.143 41.667 0.00 0.00 44.47 4.02
1976 2053 5.342259 GTGCACCGATCAAACTAATTTTGTC 59.658 40.000 5.22 0.00 44.47 3.18
1977 2054 5.219633 GTGCACCGATCAAACTAATTTTGT 58.780 37.500 5.22 0.00 44.47 2.83
1978 2055 4.621034 GGTGCACCGATCAAACTAATTTTG 59.379 41.667 22.49 0.00 45.38 2.44
1986 2063 0.881118 ATGTGGTGCACCGATCAAAC 59.119 50.000 30.07 21.20 39.43 2.93
1993 2070 0.946700 TCAACGTATGTGGTGCACCG 60.947 55.000 30.07 19.05 39.43 4.94
1994 2071 0.796312 CTCAACGTATGTGGTGCACC 59.204 55.000 29.67 29.67 32.73 5.01
1995 2072 1.790755 TCTCAACGTATGTGGTGCAC 58.209 50.000 8.80 8.80 34.56 4.57
1996 2073 2.760634 ATCTCAACGTATGTGGTGCA 57.239 45.000 0.00 0.00 0.00 4.57
1997 2074 5.734855 AATTATCTCAACGTATGTGGTGC 57.265 39.130 0.00 0.00 0.00 5.01
1998 2075 8.192068 TGTTAATTATCTCAACGTATGTGGTG 57.808 34.615 0.00 0.00 0.00 4.17
1999 2076 8.780846 TTGTTAATTATCTCAACGTATGTGGT 57.219 30.769 0.00 0.00 0.00 4.16
2026 2103 8.883731 AGTAGTACTCGTACAACGTAATGTATT 58.116 33.333 0.00 0.00 43.14 1.89
2027 2104 8.425577 AGTAGTACTCGTACAACGTAATGTAT 57.574 34.615 0.00 0.00 43.14 2.29
2028 2105 7.827819 AGTAGTACTCGTACAACGTAATGTA 57.172 36.000 0.00 0.00 43.14 2.29
2029 2106 6.727824 AGTAGTACTCGTACAACGTAATGT 57.272 37.500 0.00 0.00 43.14 2.71
2030 2107 6.843279 GCTAGTAGTACTCGTACAACGTAATG 59.157 42.308 5.96 0.00 43.14 1.90
2031 2108 6.758886 AGCTAGTAGTACTCGTACAACGTAAT 59.241 38.462 5.96 0.00 43.14 1.89
2032 2109 6.035005 CAGCTAGTAGTACTCGTACAACGTAA 59.965 42.308 5.96 0.00 43.14 3.18
2033 2110 5.516696 CAGCTAGTAGTACTCGTACAACGTA 59.483 44.000 5.96 0.00 43.14 3.57
2035 2112 4.564372 TCAGCTAGTAGTACTCGTACAACG 59.436 45.833 5.96 0.00 44.19 4.10
2036 2113 6.561902 CGATCAGCTAGTAGTACTCGTACAAC 60.562 46.154 5.96 0.00 38.48 3.32
2037 2114 5.461407 CGATCAGCTAGTAGTACTCGTACAA 59.539 44.000 5.96 0.00 38.48 2.41
2038 2115 4.981054 CGATCAGCTAGTAGTACTCGTACA 59.019 45.833 5.96 0.00 38.48 2.90
2039 2116 5.218885 TCGATCAGCTAGTAGTACTCGTAC 58.781 45.833 5.96 0.00 36.35 3.67
2040 2117 5.444663 TCGATCAGCTAGTAGTACTCGTA 57.555 43.478 5.96 0.00 0.00 3.43
2041 2118 4.319139 TCGATCAGCTAGTAGTACTCGT 57.681 45.455 5.96 0.00 0.00 4.18
2042 2119 4.924462 TGATCGATCAGCTAGTAGTACTCG 59.076 45.833 23.99 1.26 32.11 4.18
2043 2120 6.595794 GTTGATCGATCAGCTAGTAGTACTC 58.404 44.000 28.64 0.14 38.19 2.59
2044 2121 5.177881 CGTTGATCGATCAGCTAGTAGTACT 59.822 44.000 31.13 8.14 42.86 2.73
2045 2122 5.177142 TCGTTGATCGATCAGCTAGTAGTAC 59.823 44.000 31.13 20.62 44.01 2.73
2046 2123 5.295152 TCGTTGATCGATCAGCTAGTAGTA 58.705 41.667 31.13 12.47 44.01 1.82
2047 2124 4.127907 TCGTTGATCGATCAGCTAGTAGT 58.872 43.478 31.13 0.00 44.01 2.73
2048 2125 4.733972 TCGTTGATCGATCAGCTAGTAG 57.266 45.455 31.13 19.47 44.01 2.57
2074 2151 1.717645 CGAACCGACCGACTAAGTTTG 59.282 52.381 0.00 0.00 0.00 2.93
2109 2186 2.556257 GCTAGCTCCTGGAAAACTAGC 58.444 52.381 25.08 25.08 46.24 3.42
2121 2201 1.104577 ACACCTCGCTAGCTAGCTCC 61.105 60.000 36.02 12.79 46.85 4.70
2135 2220 1.046472 TCCACGTCAACCTCACACCT 61.046 55.000 0.00 0.00 0.00 4.00
2140 2225 0.534203 GCCTTTCCACGTCAACCTCA 60.534 55.000 0.00 0.00 0.00 3.86
2227 2322 4.129737 AGCGACGATCCACACGGG 62.130 66.667 0.00 0.00 38.37 5.28
2285 2380 5.295540 CCTTTCCTCTTTTCTGATCGATTCC 59.704 44.000 0.00 0.00 0.00 3.01
2348 2450 7.119699 CAGCATGACAGTATTTTGTTTCCTCTA 59.880 37.037 0.00 0.00 39.69 2.43
2376 2486 1.960689 GGATGCTCCTCTCCTACTCAC 59.039 57.143 0.00 0.00 32.53 3.51
2404 2517 0.811616 GTACTCGGGCTCCAAGCATG 60.812 60.000 0.86 0.00 44.75 4.06
2405 2518 1.522569 GTACTCGGGCTCCAAGCAT 59.477 57.895 0.86 0.00 44.75 3.79
2406 2519 2.978824 GTACTCGGGCTCCAAGCA 59.021 61.111 0.86 0.00 44.75 3.91
2407 2520 1.660560 TACGTACTCGGGCTCCAAGC 61.661 60.000 0.00 0.00 41.85 4.01
2409 2522 0.608856 TGTACGTACTCGGGCTCCAA 60.609 55.000 25.12 0.00 41.85 3.53
2413 2526 1.317431 TGCATGTACGTACTCGGGCT 61.317 55.000 25.12 2.14 41.85 5.19
2414 2527 0.249322 ATGCATGTACGTACTCGGGC 60.249 55.000 25.12 20.98 41.85 6.13
2415 2528 2.658285 GTATGCATGTACGTACTCGGG 58.342 52.381 25.12 13.15 41.85 5.14
2416 2529 2.304413 CGTATGCATGTACGTACTCGG 58.696 52.381 25.12 15.38 41.75 4.63
2433 2547 2.975410 CACTCTTGGACACGTACGTA 57.025 50.000 22.34 1.84 0.00 3.57
2471 2585 5.343307 ACATGCACCAACTTCTTCTTTTT 57.657 34.783 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.