Multiple sequence alignment - TraesCS3A01G007300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G007300 chr3A 100.000 3878 0 0 1 3878 7477888 7474011 0.000000e+00 7162.0
1 TraesCS3A01G007300 chr3B 86.536 1983 121 58 1987 3878 5169975 5171902 0.000000e+00 2049.0
2 TraesCS3A01G007300 chr3B 85.981 1983 127 62 1987 3878 3666375 3664453 0.000000e+00 1982.0
3 TraesCS3A01G007300 chr3B 90.521 844 42 13 683 1497 3406886 3407720 0.000000e+00 1081.0
4 TraesCS3A01G007300 chr3B 85.018 821 66 29 683 1458 5323979 5323171 0.000000e+00 782.0
5 TraesCS3A01G007300 chr3B 90.685 569 33 15 940 1497 3667380 3666821 0.000000e+00 739.0
6 TraesCS3A01G007300 chr3B 92.368 511 30 7 988 1497 5169027 5169529 0.000000e+00 719.0
7 TraesCS3A01G007300 chr3B 85.574 714 61 22 1519 2192 5323156 5322445 0.000000e+00 710.0
8 TraesCS3A01G007300 chr3B 94.603 315 12 5 361 673 5324343 5324032 2.100000e-132 483.0
9 TraesCS3A01G007300 chr3B 92.926 311 19 3 361 670 3406522 3406830 2.130000e-122 449.0
10 TraesCS3A01G007300 chr3B 84.076 314 47 3 361 673 5226089 5225778 2.260000e-77 300.0
11 TraesCS3A01G007300 chr3B 83.758 314 48 3 361 673 3610603 3610914 1.050000e-75 294.0
12 TraesCS3A01G007300 chr3B 85.864 191 22 4 2516 2704 3408649 3408836 8.500000e-47 198.0
13 TraesCS3A01G007300 chr3B 90.066 151 11 3 2558 2708 5322165 5322019 3.950000e-45 193.0
14 TraesCS3A01G007300 chr3B 84.848 132 14 5 2578 2708 3625833 3625959 1.130000e-25 128.0
15 TraesCS3A01G007300 chr3D 85.377 1354 141 32 1733 3047 1639914 1638579 0.000000e+00 1351.0
16 TraesCS3A01G007300 chr3D 88.797 848 43 24 683 1502 1337193 1338016 0.000000e+00 992.0
17 TraesCS3A01G007300 chr3D 89.043 794 27 27 683 1452 1640970 1640213 0.000000e+00 929.0
18 TraesCS3A01G007300 chr3D 92.381 420 18 5 935 1351 1644243 1643835 1.550000e-163 586.0
19 TraesCS3A01G007300 chr3D 80.893 717 100 23 1731 2417 546540997 546541706 7.380000e-147 531.0
20 TraesCS3A01G007300 chr3D 92.652 313 22 1 361 673 1336790 1337101 2.130000e-122 449.0
21 TraesCS3A01G007300 chr3D 92.581 310 22 1 364 673 1641370 1641062 9.890000e-121 444.0
22 TraesCS3A01G007300 chr3D 91.593 226 13 4 1510 1730 1640186 1639962 1.350000e-79 307.0
23 TraesCS3A01G007300 chr3D 83.121 314 50 3 361 673 1523229 1523540 2.280000e-72 283.0
24 TraesCS3A01G007300 chr3D 83.122 237 32 5 2472 2708 1339081 1339309 3.930000e-50 209.0
25 TraesCS3A01G007300 chr3D 87.273 110 12 2 1 110 1523116 1523223 1.460000e-24 124.0
26 TraesCS3A01G007300 chr7D 97.587 373 9 0 1072 1444 7302269 7301897 1.170000e-179 640.0
27 TraesCS3A01G007300 chr7D 82.301 226 29 8 109 328 98401708 98401928 6.620000e-43 185.0
28 TraesCS3A01G007300 chr7D 94.444 90 5 0 2561 2650 7300734 7300645 5.220000e-29 139.0
29 TraesCS3A01G007300 chr7A 96.783 373 12 0 1072 1444 8262589 8262217 1.180000e-174 623.0
30 TraesCS3A01G007300 chr7A 94.444 90 5 0 2561 2650 8258799 8258710 5.220000e-29 139.0
31 TraesCS3A01G007300 chr2B 81.590 717 95 22 1731 2417 727307342 727308051 3.380000e-155 558.0
32 TraesCS3A01G007300 chr6B 79.552 714 109 23 1734 2417 94240575 94239869 3.510000e-130 475.0
33 TraesCS3A01G007300 chr6B 88.444 225 20 4 1511 1730 94240847 94240624 2.300000e-67 267.0
34 TraesCS3A01G007300 chr2D 81.436 571 74 20 1871 2417 56853120 56853682 4.600000e-119 438.0
35 TraesCS3A01G007300 chr2D 80.793 479 68 14 1871 2332 547752791 547752320 1.710000e-93 353.0
36 TraesCS3A01G007300 chr2D 93.182 44 3 0 2374 2417 547752298 547752255 8.990000e-07 65.8
37 TraesCS3A01G007300 chr7B 88.043 92 6 5 113 200 74301889 74301799 1.910000e-18 104.0
38 TraesCS3A01G007300 chr5B 89.394 66 5 2 130 193 213870944 213870879 8.930000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G007300 chr3A 7474011 7477888 3877 True 7162.0 7162 100.000000 1 3878 1 chr3A.!!$R1 3877
1 TraesCS3A01G007300 chr3B 5169027 5171902 2875 False 1384.0 2049 89.452000 988 3878 2 chr3B.!!$F4 2890
2 TraesCS3A01G007300 chr3B 3664453 3667380 2927 True 1360.5 1982 88.333000 940 3878 2 chr3B.!!$R2 2938
3 TraesCS3A01G007300 chr3B 3406522 3408836 2314 False 576.0 1081 89.770333 361 2704 3 chr3B.!!$F3 2343
4 TraesCS3A01G007300 chr3B 5322019 5324343 2324 True 542.0 782 88.815250 361 2708 4 chr3B.!!$R3 2347
5 TraesCS3A01G007300 chr3D 1638579 1644243 5664 True 723.4 1351 90.195000 364 3047 5 chr3D.!!$R1 2683
6 TraesCS3A01G007300 chr3D 1336790 1339309 2519 False 550.0 992 88.190333 361 2708 3 chr3D.!!$F2 2347
7 TraesCS3A01G007300 chr3D 546540997 546541706 709 False 531.0 531 80.893000 1731 2417 1 chr3D.!!$F1 686
8 TraesCS3A01G007300 chr7D 7300645 7302269 1624 True 389.5 640 96.015500 1072 2650 2 chr7D.!!$R1 1578
9 TraesCS3A01G007300 chr7A 8258710 8262589 3879 True 381.0 623 95.613500 1072 2650 2 chr7A.!!$R1 1578
10 TraesCS3A01G007300 chr2B 727307342 727308051 709 False 558.0 558 81.590000 1731 2417 1 chr2B.!!$F1 686
11 TraesCS3A01G007300 chr6B 94239869 94240847 978 True 371.0 475 83.998000 1511 2417 2 chr6B.!!$R1 906
12 TraesCS3A01G007300 chr2D 56853120 56853682 562 False 438.0 438 81.436000 1871 2417 1 chr2D.!!$F1 546
13 TraesCS3A01G007300 chr2D 547752255 547752791 536 True 209.4 353 86.987500 1871 2417 2 chr2D.!!$R1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.181350 CCCACTTCTAGCCCATGACC 59.819 60.0 0.00 0.0 0.00 4.02 F
129 130 0.248949 GAACTAGACGATGCCCCGAC 60.249 60.0 0.00 0.0 0.00 4.79 F
842 3460 1.089112 CCAGCGCAGATTGATTCACA 58.911 50.0 11.47 0.0 0.00 3.58 F
1900 4707 0.392706 TGACTGTGGTGTACTGCAGG 59.607 55.0 19.93 0.0 33.62 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 3812 0.319383 CCGAGATCATCTTGGCGGAG 60.319 60.0 8.12 0.0 40.92 4.63 R
1884 4691 0.396435 TTCCCTGCAGTACACCACAG 59.604 55.0 13.81 0.0 0.00 3.66 R
2319 5463 0.382515 AGAGCGCGATAGAGTGGAAC 59.617 55.0 12.10 0.0 38.56 3.62 R
3237 9236 0.109272 GGCGACTGACACTTCGATGA 60.109 55.0 5.16 0.0 37.43 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.862018 TGAAGCAAAGAAACAAAAAGGACG 59.138 37.500 0.00 0.00 0.00 4.79
25 26 4.450082 AGCAAAGAAACAAAAAGGACGT 57.550 36.364 0.00 0.00 0.00 4.34
27 28 5.234752 AGCAAAGAAACAAAAAGGACGTTT 58.765 33.333 0.00 0.00 35.63 3.60
28 29 5.120053 AGCAAAGAAACAAAAAGGACGTTTG 59.880 36.000 0.00 0.00 40.95 2.93
29 30 5.670094 GCAAAGAAACAAAAAGGACGTTTGG 60.670 40.000 0.00 0.00 39.74 3.28
30 31 4.118093 AGAAACAAAAAGGACGTTTGGG 57.882 40.909 0.00 0.00 39.74 4.12
31 32 3.512329 AGAAACAAAAAGGACGTTTGGGT 59.488 39.130 0.00 0.00 39.74 4.51
32 33 3.513680 AACAAAAAGGACGTTTGGGTC 57.486 42.857 0.00 0.00 39.74 4.46
33 34 2.448453 ACAAAAAGGACGTTTGGGTCA 58.552 42.857 0.00 0.00 39.74 4.02
34 35 2.826725 ACAAAAAGGACGTTTGGGTCAA 59.173 40.909 0.00 0.00 39.74 3.18
35 36 3.258622 ACAAAAAGGACGTTTGGGTCAAA 59.741 39.130 0.00 0.00 39.74 2.69
36 37 4.246458 CAAAAAGGACGTTTGGGTCAAAA 58.754 39.130 0.00 0.00 38.70 2.44
37 38 4.746535 AAAAGGACGTTTGGGTCAAAAT 57.253 36.364 0.00 0.00 38.70 1.82
38 39 3.726291 AAGGACGTTTGGGTCAAAATG 57.274 42.857 0.00 0.00 38.70 2.32
39 40 1.960689 AGGACGTTTGGGTCAAAATGG 59.039 47.619 0.00 0.00 38.70 3.16
40 41 1.000394 GGACGTTTGGGTCAAAATGGG 60.000 52.381 0.00 0.00 38.70 4.00
41 42 0.391228 ACGTTTGGGTCAAAATGGGC 59.609 50.000 0.00 0.00 35.03 5.36
42 43 0.320334 CGTTTGGGTCAAAATGGGCC 60.320 55.000 0.00 0.00 35.03 5.80
45 46 1.535202 TGGGTCAAAATGGGCCCAC 60.535 57.895 31.51 13.77 45.40 4.61
46 47 1.229177 GGGTCAAAATGGGCCCACT 60.229 57.895 31.51 16.00 40.76 4.00
47 48 0.835971 GGGTCAAAATGGGCCCACTT 60.836 55.000 31.51 22.77 40.76 3.16
49 50 1.632589 GTCAAAATGGGCCCACTTCT 58.367 50.000 31.51 8.67 0.00 2.85
50 51 2.556559 GGTCAAAATGGGCCCACTTCTA 60.557 50.000 31.51 11.81 0.00 2.10
56 57 3.335711 GGCCCACTTCTAGCCCAT 58.664 61.111 0.00 0.00 41.00 4.00
58 59 1.635817 GGCCCACTTCTAGCCCATGA 61.636 60.000 0.00 0.00 41.00 3.07
60 61 0.181350 CCCACTTCTAGCCCATGACC 59.819 60.000 0.00 0.00 0.00 4.02
61 62 0.911769 CCACTTCTAGCCCATGACCA 59.088 55.000 0.00 0.00 0.00 4.02
62 63 1.407437 CCACTTCTAGCCCATGACCAC 60.407 57.143 0.00 0.00 0.00 4.16
64 65 0.911769 CTTCTAGCCCATGACCACCA 59.088 55.000 0.00 0.00 0.00 4.17
65 66 1.281867 CTTCTAGCCCATGACCACCAA 59.718 52.381 0.00 0.00 0.00 3.67
66 67 1.595311 TCTAGCCCATGACCACCAAT 58.405 50.000 0.00 0.00 0.00 3.16
67 68 1.922447 TCTAGCCCATGACCACCAATT 59.078 47.619 0.00 0.00 0.00 2.32
68 69 2.092429 TCTAGCCCATGACCACCAATTC 60.092 50.000 0.00 0.00 0.00 2.17
69 70 0.324645 AGCCCATGACCACCAATTCC 60.325 55.000 0.00 0.00 0.00 3.01
71 72 0.336048 CCCATGACCACCAATTCCCT 59.664 55.000 0.00 0.00 0.00 4.20
73 74 1.285962 CCATGACCACCAATTCCCTCT 59.714 52.381 0.00 0.00 0.00 3.69
74 75 2.648059 CATGACCACCAATTCCCTCTC 58.352 52.381 0.00 0.00 0.00 3.20
76 77 1.290134 GACCACCAATTCCCTCTCCT 58.710 55.000 0.00 0.00 0.00 3.69
77 78 2.225779 TGACCACCAATTCCCTCTCCTA 60.226 50.000 0.00 0.00 0.00 2.94
78 79 2.170817 GACCACCAATTCCCTCTCCTAC 59.829 54.545 0.00 0.00 0.00 3.18
80 81 2.108168 CACCAATTCCCTCTCCTACGA 58.892 52.381 0.00 0.00 0.00 3.43
81 82 2.101582 CACCAATTCCCTCTCCTACGAG 59.898 54.545 0.00 0.00 37.48 4.18
82 83 2.024273 ACCAATTCCCTCTCCTACGAGA 60.024 50.000 0.00 0.00 43.08 4.04
84 85 3.024547 CAATTCCCTCTCCTACGAGACA 58.975 50.000 0.00 0.00 40.34 3.41
85 86 2.893215 TTCCCTCTCCTACGAGACAA 57.107 50.000 0.00 0.00 40.34 3.18
86 87 2.893215 TCCCTCTCCTACGAGACAAA 57.107 50.000 0.00 0.00 40.34 2.83
90 91 2.415625 CCTCTCCTACGAGACAAAACCG 60.416 54.545 0.00 0.00 40.34 4.44
91 92 2.228343 CTCTCCTACGAGACAAAACCGT 59.772 50.000 0.00 0.00 40.34 4.83
92 93 3.411446 TCTCCTACGAGACAAAACCGTA 58.589 45.455 0.00 0.00 40.34 4.02
98 99 5.414264 CTACGAGACAAAACCGTAGTGACG 61.414 50.000 11.58 0.00 46.06 4.35
111 112 4.542735 CGTAGTGACGCCACATTATATGA 58.457 43.478 4.23 0.00 45.54 2.15
113 114 5.107989 CGTAGTGACGCCACATTATATGAAC 60.108 44.000 4.23 0.00 45.54 3.18
114 115 5.023533 AGTGACGCCACATTATATGAACT 57.976 39.130 4.23 0.00 45.54 3.01
116 117 6.216569 AGTGACGCCACATTATATGAACTAG 58.783 40.000 4.23 0.00 45.54 2.57
117 118 6.040504 AGTGACGCCACATTATATGAACTAGA 59.959 38.462 4.23 0.00 45.54 2.43
118 119 6.144080 GTGACGCCACATTATATGAACTAGAC 59.856 42.308 0.00 0.00 42.72 2.59
119 120 5.220381 ACGCCACATTATATGAACTAGACG 58.780 41.667 0.00 0.00 0.00 4.18
120 121 5.009310 ACGCCACATTATATGAACTAGACGA 59.991 40.000 0.00 0.00 0.00 4.20
121 122 6.093404 CGCCACATTATATGAACTAGACGAT 58.907 40.000 0.00 0.00 0.00 3.73
122 123 6.033937 CGCCACATTATATGAACTAGACGATG 59.966 42.308 0.00 0.00 0.00 3.84
123 124 6.183360 GCCACATTATATGAACTAGACGATGC 60.183 42.308 0.00 0.00 0.00 3.91
125 126 6.311445 CACATTATATGAACTAGACGATGCCC 59.689 42.308 0.00 0.00 0.00 5.36
126 127 3.963428 ATATGAACTAGACGATGCCCC 57.037 47.619 0.00 0.00 0.00 5.80
127 128 0.389391 ATGAACTAGACGATGCCCCG 59.611 55.000 0.00 0.00 0.00 5.73
128 129 0.681887 TGAACTAGACGATGCCCCGA 60.682 55.000 0.00 0.00 0.00 5.14
129 130 0.248949 GAACTAGACGATGCCCCGAC 60.249 60.000 0.00 0.00 0.00 4.79
165 166 6.830736 GGAACCATGTTAAAACAAATGCATC 58.169 36.000 0.00 0.00 43.03 3.91
166 167 6.426328 GGAACCATGTTAAAACAAATGCATCA 59.574 34.615 0.00 0.00 43.03 3.07
168 169 7.982761 ACCATGTTAAAACAAATGCATCAAT 57.017 28.000 0.00 0.00 43.03 2.57
170 171 9.499479 ACCATGTTAAAACAAATGCATCAATAA 57.501 25.926 0.00 0.00 43.03 1.40
171 172 9.976255 CCATGTTAAAACAAATGCATCAATAAG 57.024 29.630 0.00 0.00 43.03 1.73
174 175 8.494347 TGTTAAAACAAATGCATCAATAAGTGC 58.506 29.630 0.00 0.00 37.65 4.40
175 176 8.711457 GTTAAAACAAATGCATCAATAAGTGCT 58.289 29.630 0.00 0.00 41.78 4.40
177 178 8.830201 AAAACAAATGCATCAATAAGTGCTAA 57.170 26.923 0.00 0.00 41.78 3.09
180 181 8.243289 ACAAATGCATCAATAAGTGCTAAAAC 57.757 30.769 0.00 0.00 41.78 2.43
181 182 7.871973 ACAAATGCATCAATAAGTGCTAAAACA 59.128 29.630 0.00 0.00 41.78 2.83
182 183 8.710551 CAAATGCATCAATAAGTGCTAAAACAA 58.289 29.630 0.00 0.00 41.78 2.83
183 184 7.816945 ATGCATCAATAAGTGCTAAAACAAC 57.183 32.000 0.00 0.00 41.78 3.32
184 185 6.980593 TGCATCAATAAGTGCTAAAACAACT 58.019 32.000 0.00 0.00 41.78 3.16
185 186 6.862608 TGCATCAATAAGTGCTAAAACAACTG 59.137 34.615 0.00 0.00 41.78 3.16
186 187 7.083858 GCATCAATAAGTGCTAAAACAACTGA 58.916 34.615 0.00 0.00 38.30 3.41
187 188 7.594758 GCATCAATAAGTGCTAAAACAACTGAA 59.405 33.333 0.00 0.00 38.30 3.02
188 189 9.462174 CATCAATAAGTGCTAAAACAACTGAAA 57.538 29.630 0.00 0.00 0.00 2.69
189 190 8.850454 TCAATAAGTGCTAAAACAACTGAAAC 57.150 30.769 0.00 0.00 0.00 2.78
190 191 8.682710 TCAATAAGTGCTAAAACAACTGAAACT 58.317 29.630 0.00 0.00 0.00 2.66
269 270 9.577110 AACATACAAAGCATCTGATAAAATGTG 57.423 29.630 0.00 0.00 0.00 3.21
270 271 8.742777 ACATACAAAGCATCTGATAAAATGTGT 58.257 29.630 0.00 0.00 0.00 3.72
320 321 7.523293 AAACATAATGTGACACCATCTTTCA 57.477 32.000 2.45 0.00 0.00 2.69
321 322 7.523293 AACATAATGTGACACCATCTTTCAA 57.477 32.000 2.45 0.00 0.00 2.69
322 323 7.707624 ACATAATGTGACACCATCTTTCAAT 57.292 32.000 2.45 0.00 0.00 2.57
323 324 8.806429 ACATAATGTGACACCATCTTTCAATA 57.194 30.769 2.45 0.00 0.00 1.90
324 325 9.241919 ACATAATGTGACACCATCTTTCAATAA 57.758 29.630 2.45 0.00 0.00 1.40
328 329 8.816640 ATGTGACACCATCTTTCAATAAAAAC 57.183 30.769 2.45 0.00 0.00 2.43
329 330 7.776107 TGTGACACCATCTTTCAATAAAAACA 58.224 30.769 2.45 0.00 0.00 2.83
330 331 8.420222 TGTGACACCATCTTTCAATAAAAACAT 58.580 29.630 2.45 0.00 0.00 2.71
331 332 8.702438 GTGACACCATCTTTCAATAAAAACATG 58.298 33.333 0.00 0.00 0.00 3.21
332 333 7.871973 TGACACCATCTTTCAATAAAAACATGG 59.128 33.333 0.00 3.14 40.34 3.66
333 334 7.961351 ACACCATCTTTCAATAAAAACATGGA 58.039 30.769 9.65 0.00 38.53 3.41
334 335 8.428063 ACACCATCTTTCAATAAAAACATGGAA 58.572 29.630 9.65 0.00 38.53 3.53
336 337 7.598493 ACCATCTTTCAATAAAAACATGGAACG 59.402 33.333 9.65 0.00 38.53 3.95
337 338 7.411804 CCATCTTTCAATAAAAACATGGAACGC 60.412 37.037 0.00 0.00 38.53 4.84
338 339 6.507900 TCTTTCAATAAAAACATGGAACGCA 58.492 32.000 0.00 0.00 0.00 5.24
339 340 6.980978 TCTTTCAATAAAAACATGGAACGCAA 59.019 30.769 0.00 0.00 0.00 4.85
341 342 6.517914 TCAATAAAAACATGGAACGCAAAC 57.482 33.333 0.00 0.00 0.00 2.93
342 343 6.276847 TCAATAAAAACATGGAACGCAAACT 58.723 32.000 0.00 0.00 0.00 2.66
343 344 7.426410 TCAATAAAAACATGGAACGCAAACTA 58.574 30.769 0.00 0.00 0.00 2.24
344 345 8.085296 TCAATAAAAACATGGAACGCAAACTAT 58.915 29.630 0.00 0.00 0.00 2.12
345 346 8.707839 CAATAAAAACATGGAACGCAAACTATT 58.292 29.630 0.00 0.00 0.00 1.73
346 347 8.825667 ATAAAAACATGGAACGCAAACTATTT 57.174 26.923 0.00 0.00 0.00 1.40
347 348 9.915629 ATAAAAACATGGAACGCAAACTATTTA 57.084 25.926 0.00 0.00 0.00 1.40
348 349 7.867445 AAAACATGGAACGCAAACTATTTAG 57.133 32.000 0.00 0.00 0.00 1.85
349 350 6.811253 AACATGGAACGCAAACTATTTAGA 57.189 33.333 0.00 0.00 0.00 2.10
350 351 7.391148 AACATGGAACGCAAACTATTTAGAT 57.609 32.000 0.00 0.00 0.00 1.98
351 352 8.500753 AACATGGAACGCAAACTATTTAGATA 57.499 30.769 0.00 0.00 0.00 1.98
352 353 8.677148 ACATGGAACGCAAACTATTTAGATAT 57.323 30.769 0.00 0.00 0.00 1.63
353 354 9.772973 ACATGGAACGCAAACTATTTAGATATA 57.227 29.630 0.00 0.00 0.00 0.86
383 2894 4.406456 TCTATTCACCTTGTGTGCCATTT 58.594 39.130 0.00 0.00 45.03 2.32
388 2899 1.830477 ACCTTGTGTGCCATTTGTTGT 59.170 42.857 0.00 0.00 0.00 3.32
474 2986 1.141234 GCCACACTACTCTACCGCC 59.859 63.158 0.00 0.00 0.00 6.13
477 2989 2.412112 CACTACTCTACCGCCGCC 59.588 66.667 0.00 0.00 0.00 6.13
521 3033 3.181465 GCGAAGAGGAAGACCATTATGGA 60.181 47.826 19.23 0.00 40.96 3.41
527 3039 2.434702 GGAAGACCATTATGGAGTCGGT 59.565 50.000 19.23 0.00 40.96 4.69
544 3056 1.403814 GGTGACGATGGAGATCCTGA 58.596 55.000 0.00 0.00 36.82 3.86
585 3097 3.630312 TGTCGACGAAGATGATCATGGTA 59.370 43.478 14.30 0.00 0.00 3.25
705 3299 5.939764 ATCTAGGCAGACAGACATTAACA 57.060 39.130 0.00 0.00 32.25 2.41
734 3328 5.794687 TCTTGGTCGCATTAACATAACAG 57.205 39.130 0.00 0.00 0.00 3.16
746 3340 7.333423 GCATTAACATAACAGTAGACCAAGACA 59.667 37.037 0.00 0.00 0.00 3.41
773 3367 9.667107 ACCTTGGTGATATTAACATATATTCCG 57.333 33.333 0.00 0.00 0.00 4.30
774 3368 9.667107 CCTTGGTGATATTAACATATATTCCGT 57.333 33.333 0.00 0.00 0.00 4.69
819 3437 3.116096 AGAGTAACTGATACTGGGCCA 57.884 47.619 5.85 5.85 45.00 5.36
820 3438 3.034635 AGAGTAACTGATACTGGGCCAG 58.965 50.000 31.62 31.62 45.00 4.85
821 3439 2.103263 GAGTAACTGATACTGGGCCAGG 59.897 54.545 35.34 20.33 45.00 4.45
822 3440 1.141053 GTAACTGATACTGGGCCAGGG 59.859 57.143 35.34 20.97 35.51 4.45
823 3441 1.926426 AACTGATACTGGGCCAGGGC 61.926 60.000 35.34 23.57 35.51 5.19
842 3460 1.089112 CCAGCGCAGATTGATTCACA 58.911 50.000 11.47 0.00 0.00 3.58
865 3483 3.059868 CACATGTTGTCAGGTGTCGTAAC 60.060 47.826 0.00 0.00 46.80 2.50
866 3484 3.181469 ACATGTTGTCAGGTGTCGTAACT 60.181 43.478 0.00 0.00 37.20 2.24
872 3490 1.822990 TCAGGTGTCGTAACTGGGATC 59.177 52.381 7.45 0.00 33.19 3.36
878 3498 4.504858 GTGTCGTAACTGGGATCAAGAAT 58.495 43.478 0.00 0.00 0.00 2.40
912 3532 3.305516 GCCAAACCAGGGCCACAG 61.306 66.667 6.18 0.00 45.87 3.66
1509 4193 4.685030 GCTCGATTTAGGGGTTTGGTGATA 60.685 45.833 0.00 0.00 0.00 2.15
1512 4196 7.139287 TCGATTTAGGGGTTTGGTGATATAA 57.861 36.000 0.00 0.00 0.00 0.98
1529 4277 5.702670 TGATATAAGCAGCTAATTGCCTGAC 59.297 40.000 0.00 3.63 45.18 3.51
1681 4435 1.493022 ACACTGGTGTAGCTTGGGAAA 59.507 47.619 4.42 0.00 42.90 3.13
1703 4457 8.037166 GGAAATCTGCTTAGAAATGAATGGTTT 58.963 33.333 0.00 0.00 0.00 3.27
1722 4477 7.696992 TGGTTTTTGTGAGTTCTTAAGAGTT 57.303 32.000 5.12 0.00 0.00 3.01
1757 4558 1.746470 TGAGACTGCTGCAATGATGG 58.254 50.000 3.02 0.00 0.00 3.51
1787 4588 5.495926 ACTTGAGATGTTTGATCACTCCT 57.504 39.130 0.00 0.00 0.00 3.69
1809 4610 4.342862 TGCTGATATTCCTAGAACAGGC 57.657 45.455 0.00 0.00 45.10 4.85
1817 4618 2.089980 TCCTAGAACAGGCGTCACTAC 58.910 52.381 0.00 0.00 45.10 2.73
1818 4619 2.093106 CCTAGAACAGGCGTCACTACT 58.907 52.381 0.00 0.00 37.70 2.57
1865 4672 2.820059 TAATCGGCTCATAGTGCTGG 57.180 50.000 0.00 0.00 37.40 4.85
1868 4675 1.704641 TCGGCTCATAGTGCTGGTAT 58.295 50.000 0.00 0.00 37.40 2.73
1869 4676 1.341209 TCGGCTCATAGTGCTGGTATG 59.659 52.381 0.00 0.00 37.40 2.39
1884 4691 5.761726 TGCTGGTATGATCAATGAATCTGAC 59.238 40.000 0.00 0.00 0.00 3.51
1891 4698 4.939439 TGATCAATGAATCTGACTGTGGTG 59.061 41.667 0.00 0.00 0.00 4.17
1896 4703 4.257267 TGAATCTGACTGTGGTGTACTG 57.743 45.455 0.00 0.00 0.00 2.74
1897 4704 2.751166 ATCTGACTGTGGTGTACTGC 57.249 50.000 0.00 0.00 0.00 4.40
1900 4707 0.392706 TGACTGTGGTGTACTGCAGG 59.607 55.000 19.93 0.00 33.62 4.85
1949 4756 2.689035 TTTGCGATGCCCTGTGTGGA 62.689 55.000 0.00 0.00 38.35 4.02
1999 4818 9.366216 TGTGTGTTACTTGAGTCATATATGAAC 57.634 33.333 16.97 13.89 38.75 3.18
2016 4836 9.821240 ATATATGAACTGTACTGAGATTCTCCT 57.179 33.333 11.12 0.00 0.00 3.69
2053 4873 5.183904 GGTAAGGAAAGTTGACATGCTTGAT 59.816 40.000 6.60 0.00 0.00 2.57
2089 4909 1.067495 CGGTCTGAGAAGGTCAAGGAC 60.067 57.143 0.00 0.00 33.60 3.85
2250 5381 7.708322 TCTCTGAATGAGATTGTATGTTACTGC 59.292 37.037 0.00 0.00 46.03 4.40
2251 5382 6.763135 TCTGAATGAGATTGTATGTTACTGCC 59.237 38.462 0.00 0.00 0.00 4.85
2252 5383 6.413892 TGAATGAGATTGTATGTTACTGCCA 58.586 36.000 0.00 0.00 0.00 4.92
2254 5385 5.675684 TGAGATTGTATGTTACTGCCAGA 57.324 39.130 0.00 0.00 0.00 3.86
2300 5444 3.926616 AGTCATGTAGGTGTTGTAGCAC 58.073 45.455 0.00 0.00 38.56 4.40
2303 5447 3.323691 TCATGTAGGTGTTGTAGCACACT 59.676 43.478 5.18 0.00 45.56 3.55
2307 5451 0.944386 GGTGTTGTAGCACACTGTGG 59.056 55.000 13.09 2.45 45.56 4.17
2310 5454 2.031683 GTGTTGTAGCACACTGTGGAAC 59.968 50.000 13.09 5.13 43.32 3.62
2319 5463 3.424829 GCACACTGTGGAACGATTGTATG 60.425 47.826 13.09 0.00 42.39 2.39
2333 5477 4.383052 CGATTGTATGTTCCACTCTATCGC 59.617 45.833 0.00 0.00 0.00 4.58
2335 5479 2.052157 GTATGTTCCACTCTATCGCGC 58.948 52.381 0.00 0.00 0.00 6.86
2336 5480 0.747255 ATGTTCCACTCTATCGCGCT 59.253 50.000 5.56 0.00 0.00 5.92
2365 5509 6.712095 TGAGTGTTGATGCATCTTTTCTAGTT 59.288 34.615 26.32 4.58 0.00 2.24
2366 5510 7.229306 TGAGTGTTGATGCATCTTTTCTAGTTT 59.771 33.333 26.32 3.26 0.00 2.66
2367 5511 8.621532 AGTGTTGATGCATCTTTTCTAGTTTA 57.378 30.769 26.32 0.00 0.00 2.01
2368 5512 8.725148 AGTGTTGATGCATCTTTTCTAGTTTAG 58.275 33.333 26.32 0.00 0.00 1.85
2370 5514 6.683974 TGATGCATCTTTTCTAGTTTAGGC 57.316 37.500 26.32 0.00 0.00 3.93
2403 5558 4.743955 GCATAGCCTAACCTAACCTGGAAG 60.744 50.000 0.00 0.00 0.00 3.46
2405 5560 3.737263 AGCCTAACCTAACCTGGAAGAT 58.263 45.455 0.00 0.00 34.07 2.40
2417 5736 7.180051 CCTAACCTGGAAGATGAGCTATAGAAT 59.820 40.741 3.21 0.00 34.07 2.40
2418 5737 9.249053 CTAACCTGGAAGATGAGCTATAGAATA 57.751 37.037 3.21 0.00 34.07 1.75
2447 5766 8.826710 AGAATATCAATGTATTGTTGGTACACG 58.173 33.333 4.67 0.00 38.84 4.49
2539 6015 0.855598 ATCCCCATCCTGACCAATGG 59.144 55.000 0.00 0.00 41.81 3.16
2653 8623 4.932200 CCATCAAGGAAGAGTAGTGTTGTC 59.068 45.833 0.00 0.00 41.22 3.18
2655 8625 2.726832 AGGAAGAGTAGTGTTGTCGC 57.273 50.000 0.00 0.00 0.00 5.19
2658 8628 2.415625 GGAAGAGTAGTGTTGTCGCGAT 60.416 50.000 14.06 0.00 0.00 4.58
2741 8712 2.416893 GTCGAAACCAAGATCAGAAGCC 59.583 50.000 0.00 0.00 0.00 4.35
2744 8715 2.100605 AACCAAGATCAGAAGCCGTC 57.899 50.000 0.00 0.00 0.00 4.79
2774 8753 3.896648 TTTTGGCTCGAGTGAATCAAC 57.103 42.857 15.13 0.00 0.00 3.18
2776 8755 2.084610 TGGCTCGAGTGAATCAACAG 57.915 50.000 15.13 0.00 0.00 3.16
2804 8783 3.007074 TGCTGTAGTTTTGTACCGGATCA 59.993 43.478 9.46 3.42 0.00 2.92
2807 8786 5.123344 GCTGTAGTTTTGTACCGGATCAATT 59.877 40.000 9.46 4.91 0.00 2.32
2844 8823 0.034670 AACTGGAGCTTGGAGATGCC 60.035 55.000 0.00 0.00 37.10 4.40
2857 8836 0.107654 AGATGCCGTCTTTACCTGCC 60.108 55.000 0.00 0.00 31.47 4.85
2858 8837 0.107654 GATGCCGTCTTTACCTGCCT 60.108 55.000 0.00 0.00 0.00 4.75
2942 8922 2.031120 TGGCTCCTGGTTCTGTTTTTG 58.969 47.619 0.00 0.00 0.00 2.44
2943 8923 2.031870 GGCTCCTGGTTCTGTTTTTGT 58.968 47.619 0.00 0.00 0.00 2.83
2944 8924 2.223805 GGCTCCTGGTTCTGTTTTTGTG 60.224 50.000 0.00 0.00 0.00 3.33
2945 8925 2.223805 GCTCCTGGTTCTGTTTTTGTGG 60.224 50.000 0.00 0.00 0.00 4.17
2946 8926 3.287222 CTCCTGGTTCTGTTTTTGTGGA 58.713 45.455 0.00 0.00 0.00 4.02
2947 8927 3.699038 CTCCTGGTTCTGTTTTTGTGGAA 59.301 43.478 0.00 0.00 0.00 3.53
2948 8928 4.285863 TCCTGGTTCTGTTTTTGTGGAAT 58.714 39.130 0.00 0.00 0.00 3.01
2949 8929 4.714308 TCCTGGTTCTGTTTTTGTGGAATT 59.286 37.500 0.00 0.00 0.00 2.17
2950 8930 5.049828 CCTGGTTCTGTTTTTGTGGAATTC 58.950 41.667 0.00 0.00 0.00 2.17
2951 8931 5.163416 CCTGGTTCTGTTTTTGTGGAATTCT 60.163 40.000 5.23 0.00 0.00 2.40
2952 8932 6.293004 TGGTTCTGTTTTTGTGGAATTCTT 57.707 33.333 5.23 0.00 0.00 2.52
2990 8970 3.381335 AGGATAATCGGTAGGTTGGTGT 58.619 45.455 0.00 0.00 0.00 4.16
2991 8971 3.387050 AGGATAATCGGTAGGTTGGTGTC 59.613 47.826 0.00 0.00 0.00 3.67
3015 8997 2.776370 ATCTGTGCTTGTGGGCCCTG 62.776 60.000 25.70 11.68 0.00 4.45
3082 9064 4.803426 GGCGCGAGGTCAGGTGAG 62.803 72.222 12.10 0.00 0.00 3.51
3083 9065 4.057428 GCGCGAGGTCAGGTGAGT 62.057 66.667 12.10 0.00 0.00 3.41
3084 9066 2.126307 CGCGAGGTCAGGTGAGTG 60.126 66.667 0.00 0.00 0.00 3.51
3085 9067 2.920645 CGCGAGGTCAGGTGAGTGT 61.921 63.158 0.00 0.00 0.00 3.55
3086 9068 1.367840 GCGAGGTCAGGTGAGTGTT 59.632 57.895 0.00 0.00 0.00 3.32
3087 9069 0.249911 GCGAGGTCAGGTGAGTGTTT 60.250 55.000 0.00 0.00 0.00 2.83
3150 9132 2.738213 AAACCAGCCAGTCTCCAGCG 62.738 60.000 0.00 0.00 0.00 5.18
3151 9133 4.463879 CCAGCCAGTCTCCAGCGG 62.464 72.222 0.00 0.00 0.00 5.52
3152 9134 4.463879 CAGCCAGTCTCCAGCGGG 62.464 72.222 0.00 0.00 0.00 6.13
3205 9204 0.404040 AGCCGGGGAATTTTGACTCA 59.596 50.000 2.18 0.00 0.00 3.41
3222 9221 1.466167 CTCATCGGAGTGTTTTGCAGG 59.534 52.381 0.00 0.00 36.36 4.85
3224 9223 1.244019 ATCGGAGTGTTTTGCAGGCC 61.244 55.000 0.00 0.00 0.00 5.19
3225 9224 2.644992 GGAGTGTTTTGCAGGCCG 59.355 61.111 0.00 0.00 0.00 6.13
3227 9226 2.912025 AGTGTTTTGCAGGCCGGG 60.912 61.111 2.18 0.00 0.00 5.73
3228 9227 3.989787 GTGTTTTGCAGGCCGGGG 61.990 66.667 2.18 0.00 0.00 5.73
3229 9228 4.211330 TGTTTTGCAGGCCGGGGA 62.211 61.111 2.18 0.00 0.00 4.81
3230 9229 2.915137 GTTTTGCAGGCCGGGGAA 60.915 61.111 2.18 2.28 0.00 3.97
3231 9230 2.119391 TTTTGCAGGCCGGGGAAT 59.881 55.556 2.18 0.00 0.00 3.01
3232 9231 1.535202 TTTTGCAGGCCGGGGAATT 60.535 52.632 2.18 0.00 0.00 2.17
3233 9232 1.124477 TTTTGCAGGCCGGGGAATTT 61.124 50.000 2.18 0.00 0.00 1.82
3234 9233 1.825281 TTTGCAGGCCGGGGAATTTG 61.825 55.000 2.18 0.00 0.00 2.32
3235 9234 2.362375 GCAGGCCGGGGAATTTGA 60.362 61.111 2.18 0.00 0.00 2.69
3237 9236 1.000896 CAGGCCGGGGAATTTGACT 60.001 57.895 2.18 0.00 0.00 3.41
3238 9237 1.032114 CAGGCCGGGGAATTTGACTC 61.032 60.000 2.18 0.00 0.00 3.36
3239 9238 1.001393 GGCCGGGGAATTTGACTCA 60.001 57.895 2.18 0.00 0.00 3.41
3240 9239 0.395724 GGCCGGGGAATTTGACTCAT 60.396 55.000 2.18 0.00 0.00 2.90
3241 9240 1.025041 GCCGGGGAATTTGACTCATC 58.975 55.000 2.18 0.00 0.00 2.92
3242 9241 1.299541 CCGGGGAATTTGACTCATCG 58.700 55.000 0.00 0.00 0.00 3.84
3243 9242 1.134521 CCGGGGAATTTGACTCATCGA 60.135 52.381 0.00 0.00 0.00 3.59
3261 9279 2.728427 GAAGTGTCAGTCGCCGTCGT 62.728 60.000 0.00 0.00 36.96 4.34
3306 9324 1.117150 CCCCTAGGCGTGTAAGCTTA 58.883 55.000 2.05 0.86 37.29 3.09
3388 9406 5.505181 ACCAACCAGTATCTTCTCAATGT 57.495 39.130 0.00 0.00 0.00 2.71
3398 9416 7.966753 CAGTATCTTCTCAATGTGAAATTGTGG 59.033 37.037 0.00 0.00 0.00 4.17
3537 9558 8.022550 TGAAGCACACATTGTATAATTCAACTG 58.977 33.333 0.00 0.00 0.00 3.16
3543 9564 8.845227 ACACATTGTATAATTCAACTGTTGTCA 58.155 29.630 19.12 8.71 0.00 3.58
3558 9579 3.876914 TGTTGTCAGTGATCCACAAAGTC 59.123 43.478 0.00 0.00 36.74 3.01
3559 9580 3.836365 TGTCAGTGATCCACAAAGTCA 57.164 42.857 0.00 0.00 36.74 3.41
3560 9581 4.149511 TGTCAGTGATCCACAAAGTCAA 57.850 40.909 0.00 0.00 36.74 3.18
3561 9582 3.876914 TGTCAGTGATCCACAAAGTCAAC 59.123 43.478 0.00 0.00 36.74 3.18
3562 9583 3.059597 GTCAGTGATCCACAAAGTCAACG 60.060 47.826 0.00 0.00 36.74 4.10
3563 9584 3.130633 CAGTGATCCACAAAGTCAACGA 58.869 45.455 0.00 0.00 36.74 3.85
3564 9585 3.748048 CAGTGATCCACAAAGTCAACGAT 59.252 43.478 0.00 0.00 36.74 3.73
3565 9586 4.929211 CAGTGATCCACAAAGTCAACGATA 59.071 41.667 0.00 0.00 36.74 2.92
3566 9587 5.408299 CAGTGATCCACAAAGTCAACGATAA 59.592 40.000 0.00 0.00 36.74 1.75
3567 9588 5.639506 AGTGATCCACAAAGTCAACGATAAG 59.360 40.000 0.00 0.00 36.74 1.73
3568 9589 4.935205 TGATCCACAAAGTCAACGATAAGG 59.065 41.667 0.00 0.00 0.00 2.69
3569 9590 4.610605 TCCACAAAGTCAACGATAAGGA 57.389 40.909 0.00 0.00 0.00 3.36
3570 9591 4.566004 TCCACAAAGTCAACGATAAGGAG 58.434 43.478 0.00 0.00 0.00 3.69
3571 9592 3.684788 CCACAAAGTCAACGATAAGGAGG 59.315 47.826 0.00 0.00 0.00 4.30
3572 9593 3.684788 CACAAAGTCAACGATAAGGAGGG 59.315 47.826 0.00 0.00 0.00 4.30
3573 9594 2.678336 CAAAGTCAACGATAAGGAGGGC 59.322 50.000 0.00 0.00 0.00 5.19
3598 9619 4.643334 CCATGTCATTGTCATGTCATCCTT 59.357 41.667 18.33 0.00 37.14 3.36
3611 9632 5.611796 TGTCATCCTTGAAATCGAAGTTG 57.388 39.130 0.00 0.00 32.48 3.16
3657 9678 5.916883 CGCTTTCCATTTCCAATAATAGCAG 59.083 40.000 0.00 0.00 0.00 4.24
3708 9741 2.295909 CTGGCCCTTTCATTTTCAACGA 59.704 45.455 0.00 0.00 0.00 3.85
3711 9744 4.157656 TGGCCCTTTCATTTTCAACGATAG 59.842 41.667 0.00 0.00 46.19 2.08
3729 9762 9.907576 CAACGATAGATTAAAGTTGACTGAATC 57.092 33.333 0.87 9.43 43.24 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.862018 CGTCCTTTTTGTTTCTTTGCTTCA 59.138 37.500 0.00 0.00 0.00 3.02
2 3 4.862574 ACGTCCTTTTTGTTTCTTTGCTTC 59.137 37.500 0.00 0.00 0.00 3.86
3 4 4.816392 ACGTCCTTTTTGTTTCTTTGCTT 58.184 34.783 0.00 0.00 0.00 3.91
5 6 5.312838 CAAACGTCCTTTTTGTTTCTTTGC 58.687 37.500 0.00 0.00 33.80 3.68
6 7 5.163903 CCCAAACGTCCTTTTTGTTTCTTTG 60.164 40.000 0.00 0.00 33.80 2.77
8 9 4.020928 ACCCAAACGTCCTTTTTGTTTCTT 60.021 37.500 0.00 0.00 33.80 2.52
9 10 3.512329 ACCCAAACGTCCTTTTTGTTTCT 59.488 39.130 0.00 0.00 33.80 2.52
10 11 3.852286 ACCCAAACGTCCTTTTTGTTTC 58.148 40.909 0.00 0.00 33.80 2.78
11 12 3.258622 TGACCCAAACGTCCTTTTTGTTT 59.741 39.130 0.00 0.00 36.31 2.83
13 14 2.448453 TGACCCAAACGTCCTTTTTGT 58.552 42.857 0.00 0.00 32.92 2.83
14 15 3.512033 TTGACCCAAACGTCCTTTTTG 57.488 42.857 0.00 0.00 34.31 2.44
15 16 4.538746 TTTTGACCCAAACGTCCTTTTT 57.461 36.364 0.00 0.00 32.79 1.94
17 18 3.181470 CCATTTTGACCCAAACGTCCTTT 60.181 43.478 0.00 0.00 32.79 3.11
18 19 2.364002 CCATTTTGACCCAAACGTCCTT 59.636 45.455 0.00 0.00 32.79 3.36
19 20 1.960689 CCATTTTGACCCAAACGTCCT 59.039 47.619 0.00 0.00 32.79 3.85
20 21 1.000394 CCCATTTTGACCCAAACGTCC 60.000 52.381 0.00 0.00 32.79 4.79
21 22 1.604438 GCCCATTTTGACCCAAACGTC 60.604 52.381 0.00 0.00 32.79 4.34
22 23 0.391228 GCCCATTTTGACCCAAACGT 59.609 50.000 0.00 0.00 32.79 3.99
24 25 0.036164 GGGCCCATTTTGACCCAAAC 59.964 55.000 19.95 0.00 42.33 2.93
25 26 2.457759 GGGCCCATTTTGACCCAAA 58.542 52.632 19.95 0.00 42.33 3.28
28 29 0.835971 AAGTGGGCCCATTTTGACCC 60.836 55.000 31.45 12.75 43.14 4.46
29 30 0.608130 GAAGTGGGCCCATTTTGACC 59.392 55.000 31.12 16.17 0.00 4.02
30 31 1.632589 AGAAGTGGGCCCATTTTGAC 58.367 50.000 31.12 19.45 0.00 3.18
31 32 2.883888 GCTAGAAGTGGGCCCATTTTGA 60.884 50.000 31.12 20.84 0.00 2.69
32 33 1.478105 GCTAGAAGTGGGCCCATTTTG 59.522 52.381 31.12 23.44 0.00 2.44
33 34 1.619704 GGCTAGAAGTGGGCCCATTTT 60.620 52.381 31.12 25.74 39.96 1.82
34 35 0.033109 GGCTAGAAGTGGGCCCATTT 60.033 55.000 31.08 31.08 39.96 2.32
35 36 1.615262 GGCTAGAAGTGGGCCCATT 59.385 57.895 31.45 23.46 39.96 3.16
36 37 3.335711 GGCTAGAAGTGGGCCCAT 58.664 61.111 31.45 14.17 39.96 4.00
40 41 0.464554 GTCATGGGCTAGAAGTGGGC 60.465 60.000 0.00 0.00 0.00 5.36
41 42 0.181350 GGTCATGGGCTAGAAGTGGG 59.819 60.000 0.00 0.00 0.00 4.61
42 43 0.911769 TGGTCATGGGCTAGAAGTGG 59.088 55.000 0.00 0.00 0.00 4.00
44 45 0.912486 GGTGGTCATGGGCTAGAAGT 59.088 55.000 0.00 0.00 0.00 3.01
45 46 0.911769 TGGTGGTCATGGGCTAGAAG 59.088 55.000 0.00 0.00 0.00 2.85
46 47 1.367346 TTGGTGGTCATGGGCTAGAA 58.633 50.000 0.00 0.00 0.00 2.10
47 48 1.595311 ATTGGTGGTCATGGGCTAGA 58.405 50.000 0.00 0.00 0.00 2.43
49 50 1.064017 GGAATTGGTGGTCATGGGCTA 60.064 52.381 0.00 0.00 0.00 3.93
50 51 0.324645 GGAATTGGTGGTCATGGGCT 60.325 55.000 0.00 0.00 0.00 5.19
54 55 2.648059 GAGAGGGAATTGGTGGTCATG 58.352 52.381 0.00 0.00 0.00 3.07
55 56 1.566231 GGAGAGGGAATTGGTGGTCAT 59.434 52.381 0.00 0.00 0.00 3.06
56 57 0.991920 GGAGAGGGAATTGGTGGTCA 59.008 55.000 0.00 0.00 0.00 4.02
58 59 2.197465 GTAGGAGAGGGAATTGGTGGT 58.803 52.381 0.00 0.00 0.00 4.16
60 61 2.101582 CTCGTAGGAGAGGGAATTGGTG 59.898 54.545 6.59 0.00 43.27 4.17
61 62 2.024273 TCTCGTAGGAGAGGGAATTGGT 60.024 50.000 11.05 0.00 44.28 3.67
62 63 2.667470 TCTCGTAGGAGAGGGAATTGG 58.333 52.381 11.05 0.00 44.28 3.16
71 72 2.233271 ACGGTTTTGTCTCGTAGGAGA 58.767 47.619 11.05 11.05 46.90 3.71
76 77 3.606846 CGTCACTACGGTTTTGTCTCGTA 60.607 47.826 0.00 0.00 45.50 3.43
77 78 2.735823 GTCACTACGGTTTTGTCTCGT 58.264 47.619 0.00 0.00 40.40 4.18
78 79 1.712350 CGTCACTACGGTTTTGTCTCG 59.288 52.381 0.00 0.00 45.50 4.04
90 91 5.983720 AGTTCATATAATGTGGCGTCACTAC 59.016 40.000 22.43 5.48 43.94 2.73
91 92 6.156748 AGTTCATATAATGTGGCGTCACTA 57.843 37.500 22.43 6.65 43.94 2.74
92 93 5.023533 AGTTCATATAATGTGGCGTCACT 57.976 39.130 22.43 4.19 43.94 3.41
95 96 5.342525 CGTCTAGTTCATATAATGTGGCGTC 59.657 44.000 0.00 0.00 0.00 5.19
98 99 6.183360 GCATCGTCTAGTTCATATAATGTGGC 60.183 42.308 0.00 0.00 0.00 5.01
99 100 6.311445 GGCATCGTCTAGTTCATATAATGTGG 59.689 42.308 0.00 0.00 0.00 4.17
100 101 6.311445 GGGCATCGTCTAGTTCATATAATGTG 59.689 42.308 0.00 0.00 0.00 3.21
101 102 6.398918 GGGCATCGTCTAGTTCATATAATGT 58.601 40.000 0.00 0.00 0.00 2.71
102 103 5.812642 GGGGCATCGTCTAGTTCATATAATG 59.187 44.000 0.00 0.00 0.00 1.90
104 105 4.082408 CGGGGCATCGTCTAGTTCATATAA 60.082 45.833 0.00 0.00 0.00 0.98
105 106 3.442625 CGGGGCATCGTCTAGTTCATATA 59.557 47.826 0.00 0.00 0.00 0.86
107 108 1.611977 CGGGGCATCGTCTAGTTCATA 59.388 52.381 0.00 0.00 0.00 2.15
108 109 0.389391 CGGGGCATCGTCTAGTTCAT 59.611 55.000 0.00 0.00 0.00 2.57
109 110 0.681887 TCGGGGCATCGTCTAGTTCA 60.682 55.000 0.00 0.00 0.00 3.18
111 112 1.814527 GTCGGGGCATCGTCTAGTT 59.185 57.895 0.00 0.00 0.00 2.24
113 114 2.331805 CGTCGGGGCATCGTCTAG 59.668 66.667 0.00 0.00 0.00 2.43
114 115 3.896133 GCGTCGGGGCATCGTCTA 61.896 66.667 0.00 0.00 0.00 2.59
133 134 0.250945 TAACATGGTTCCCGCAGCAA 60.251 50.000 0.00 0.00 0.00 3.91
134 135 0.250945 TTAACATGGTTCCCGCAGCA 60.251 50.000 0.00 0.00 0.00 4.41
136 137 2.294791 TGTTTTAACATGGTTCCCGCAG 59.705 45.455 0.00 0.00 33.17 5.18
138 139 3.372660 TTGTTTTAACATGGTTCCCGC 57.627 42.857 0.00 0.00 38.95 6.13
139 140 4.151512 GCATTTGTTTTAACATGGTTCCCG 59.848 41.667 0.00 0.00 38.95 5.14
140 141 5.059833 TGCATTTGTTTTAACATGGTTCCC 58.940 37.500 0.00 0.00 38.95 3.97
142 143 7.418840 TGATGCATTTGTTTTAACATGGTTC 57.581 32.000 0.00 0.00 38.95 3.62
143 144 7.798596 TTGATGCATTTGTTTTAACATGGTT 57.201 28.000 0.00 0.00 38.95 3.67
144 145 7.982761 ATTGATGCATTTGTTTTAACATGGT 57.017 28.000 0.00 0.00 38.95 3.55
145 146 9.976255 CTTATTGATGCATTTGTTTTAACATGG 57.024 29.630 0.00 0.00 38.95 3.66
148 149 8.494347 GCACTTATTGATGCATTTGTTTTAACA 58.506 29.630 0.00 0.00 41.65 2.41
149 150 8.711457 AGCACTTATTGATGCATTTGTTTTAAC 58.289 29.630 0.00 0.00 44.59 2.01
150 151 8.830201 AGCACTTATTGATGCATTTGTTTTAA 57.170 26.923 0.00 0.00 44.59 1.52
151 152 9.920133 TTAGCACTTATTGATGCATTTGTTTTA 57.080 25.926 0.00 0.00 44.59 1.52
152 153 8.830201 TTAGCACTTATTGATGCATTTGTTTT 57.170 26.923 0.00 0.00 44.59 2.43
153 154 8.830201 TTTAGCACTTATTGATGCATTTGTTT 57.170 26.923 0.00 0.00 44.59 2.83
154 155 8.711457 GTTTTAGCACTTATTGATGCATTTGTT 58.289 29.630 0.00 0.00 44.59 2.83
155 156 7.871973 TGTTTTAGCACTTATTGATGCATTTGT 59.128 29.630 0.00 0.00 44.59 2.83
156 157 8.242085 TGTTTTAGCACTTATTGATGCATTTG 57.758 30.769 0.00 0.00 44.59 2.32
157 158 8.711457 GTTGTTTTAGCACTTATTGATGCATTT 58.289 29.630 0.00 0.00 44.59 2.32
159 160 7.543172 CAGTTGTTTTAGCACTTATTGATGCAT 59.457 33.333 0.00 0.00 44.59 3.96
160 161 6.862608 CAGTTGTTTTAGCACTTATTGATGCA 59.137 34.615 0.00 0.00 44.59 3.96
161 162 7.083858 TCAGTTGTTTTAGCACTTATTGATGC 58.916 34.615 0.00 0.00 42.39 3.91
162 163 9.462174 TTTCAGTTGTTTTAGCACTTATTGATG 57.538 29.630 0.00 0.00 0.00 3.07
165 166 8.856490 AGTTTCAGTTGTTTTAGCACTTATTG 57.144 30.769 0.00 0.00 0.00 1.90
234 235 9.979578 TCAGATGCTTTGTATGTTTAATTGTTT 57.020 25.926 0.00 0.00 0.00 2.83
243 244 9.577110 CACATTTTATCAGATGCTTTGTATGTT 57.423 29.630 0.00 0.00 0.00 2.71
294 295 9.072375 TGAAAGATGGTGTCACATTATGTTTAA 57.928 29.630 5.12 0.00 0.00 1.52
295 296 8.628630 TGAAAGATGGTGTCACATTATGTTTA 57.371 30.769 5.12 0.00 0.00 2.01
296 297 7.523293 TGAAAGATGGTGTCACATTATGTTT 57.477 32.000 5.12 7.04 0.00 2.83
297 298 7.523293 TTGAAAGATGGTGTCACATTATGTT 57.477 32.000 5.12 0.00 0.00 2.71
302 303 9.260002 GTTTTTATTGAAAGATGGTGTCACATT 57.740 29.630 5.12 0.00 0.00 2.71
303 304 8.420222 TGTTTTTATTGAAAGATGGTGTCACAT 58.580 29.630 5.12 0.00 0.00 3.21
304 305 7.776107 TGTTTTTATTGAAAGATGGTGTCACA 58.224 30.769 5.12 0.00 0.00 3.58
305 306 8.702438 CATGTTTTTATTGAAAGATGGTGTCAC 58.298 33.333 0.00 0.00 36.91 3.67
306 307 7.871973 CCATGTTTTTATTGAAAGATGGTGTCA 59.128 33.333 14.77 0.00 46.94 3.58
312 313 7.116090 TGCGTTCCATGTTTTTATTGAAAGATG 59.884 33.333 0.00 0.00 38.99 2.90
313 314 7.151308 TGCGTTCCATGTTTTTATTGAAAGAT 58.849 30.769 0.00 0.00 0.00 2.40
316 317 7.278868 AGTTTGCGTTCCATGTTTTTATTGAAA 59.721 29.630 0.00 0.00 0.00 2.69
317 318 6.758886 AGTTTGCGTTCCATGTTTTTATTGAA 59.241 30.769 0.00 0.00 0.00 2.69
318 319 6.276847 AGTTTGCGTTCCATGTTTTTATTGA 58.723 32.000 0.00 0.00 0.00 2.57
319 320 6.523676 AGTTTGCGTTCCATGTTTTTATTG 57.476 33.333 0.00 0.00 0.00 1.90
320 321 8.825667 AATAGTTTGCGTTCCATGTTTTTATT 57.174 26.923 0.00 0.00 0.00 1.40
321 322 8.825667 AAATAGTTTGCGTTCCATGTTTTTAT 57.174 26.923 0.00 0.00 0.00 1.40
322 323 9.400638 CTAAATAGTTTGCGTTCCATGTTTTTA 57.599 29.630 0.00 0.00 0.00 1.52
323 324 8.138712 TCTAAATAGTTTGCGTTCCATGTTTTT 58.861 29.630 0.00 0.00 0.00 1.94
324 325 7.653647 TCTAAATAGTTTGCGTTCCATGTTTT 58.346 30.769 0.00 0.00 0.00 2.43
327 328 8.677148 ATATCTAAATAGTTTGCGTTCCATGT 57.323 30.769 0.00 0.00 0.00 3.21
329 330 9.998106 ACTATATCTAAATAGTTTGCGTTCCAT 57.002 29.630 0.00 0.00 39.17 3.41
350 351 9.642343 ACACAAGGTGAATAGATGTCTACTATA 57.358 33.333 2.98 0.00 36.96 1.31
351 352 8.540507 ACACAAGGTGAATAGATGTCTACTAT 57.459 34.615 2.98 0.00 36.96 2.12
352 353 7.956328 ACACAAGGTGAATAGATGTCTACTA 57.044 36.000 2.98 0.00 36.96 1.82
353 354 6.859112 ACACAAGGTGAATAGATGTCTACT 57.141 37.500 2.98 0.00 36.96 2.57
383 2894 1.079681 GGATGTACGGGCGACAACA 60.080 57.895 0.00 0.00 0.00 3.33
388 2899 3.845259 GCTGGGATGTACGGGCGA 61.845 66.667 0.00 0.00 0.00 5.54
474 2986 2.440430 TCCTCTTCCTCCTCGGCG 60.440 66.667 0.00 0.00 0.00 6.46
477 2989 1.720694 GACGCTCCTCTTCCTCCTCG 61.721 65.000 0.00 0.00 0.00 4.63
527 3039 2.034878 CCTTCAGGATCTCCATCGTCA 58.965 52.381 0.00 0.00 38.89 4.35
544 3056 0.763223 ACCTTCACGGTGTCCTCCTT 60.763 55.000 8.17 0.00 46.80 3.36
585 3097 4.360405 ATTCCAAGCGGCCCCGTT 62.360 61.111 8.66 0.00 42.09 4.44
705 3299 3.179925 ATGCGACCAAGATGCATGT 57.820 47.368 2.46 0.00 46.82 3.21
773 3367 9.974980 TTCTTCTTCTTCTTCTTCTTCTTCTAC 57.025 33.333 0.00 0.00 0.00 2.59
819 3437 2.563013 AATCAATCTGCGCTGGCCCT 62.563 55.000 14.70 0.00 38.85 5.19
820 3438 2.068277 GAATCAATCTGCGCTGGCCC 62.068 60.000 14.70 0.00 38.85 5.80
821 3439 1.358046 GAATCAATCTGCGCTGGCC 59.642 57.895 14.70 0.00 38.85 5.36
822 3440 0.248377 GTGAATCAATCTGCGCTGGC 60.248 55.000 14.70 0.00 40.52 4.85
823 3441 1.089112 TGTGAATCAATCTGCGCTGG 58.911 50.000 14.70 4.50 0.00 4.85
824 3442 1.465777 TGTGTGAATCAATCTGCGCTG 59.534 47.619 9.73 8.88 0.00 5.18
825 3443 1.466167 GTGTGTGAATCAATCTGCGCT 59.534 47.619 9.73 0.00 0.00 5.92
826 3444 1.197492 TGTGTGTGAATCAATCTGCGC 59.803 47.619 0.00 0.00 0.00 6.09
865 3483 6.657875 ACTCCTCTTTTATTCTTGATCCCAG 58.342 40.000 0.00 0.00 0.00 4.45
866 3484 6.642733 ACTCCTCTTTTATTCTTGATCCCA 57.357 37.500 0.00 0.00 0.00 4.37
872 3490 5.586643 GCCCAGTACTCCTCTTTTATTCTTG 59.413 44.000 0.00 0.00 0.00 3.02
878 3498 2.910544 TGGCCCAGTACTCCTCTTTTA 58.089 47.619 0.00 0.00 0.00 1.52
1038 3684 0.333312 TCCTCCTCCTCCTCTGTGAC 59.667 60.000 0.00 0.00 0.00 3.67
1039 3685 1.006519 CTTCCTCCTCCTCCTCTGTGA 59.993 57.143 0.00 0.00 0.00 3.58
1040 3686 1.006519 TCTTCCTCCTCCTCCTCTGTG 59.993 57.143 0.00 0.00 0.00 3.66
1041 3687 1.388174 TCTTCCTCCTCCTCCTCTGT 58.612 55.000 0.00 0.00 0.00 3.41
1042 3688 2.387757 CTTCTTCCTCCTCCTCCTCTG 58.612 57.143 0.00 0.00 0.00 3.35
1137 3812 0.319383 CCGAGATCATCTTGGCGGAG 60.319 60.000 8.12 0.00 40.92 4.63
1143 3818 1.536922 CCCGTCACCGAGATCATCTTG 60.537 57.143 0.00 0.00 35.63 3.02
1509 4193 3.881688 CTGTCAGGCAATTAGCTGCTTAT 59.118 43.478 7.79 0.08 44.79 1.73
1512 4196 1.004044 ACTGTCAGGCAATTAGCTGCT 59.996 47.619 7.57 7.57 44.79 4.24
1627 4378 7.480542 GGTAAAAAGCTACACAAATCACATACG 59.519 37.037 0.00 0.00 0.00 3.06
1681 4435 8.370182 ACAAAAACCATTCATTTCTAAGCAGAT 58.630 29.630 0.00 0.00 0.00 2.90
1722 4477 8.506437 CAGCAGTCTCAACATCTGTTTTATAAA 58.494 33.333 0.00 0.00 35.83 1.40
1726 4481 4.214119 GCAGCAGTCTCAACATCTGTTTTA 59.786 41.667 0.00 0.00 35.83 1.52
1729 4484 2.149578 GCAGCAGTCTCAACATCTGTT 58.850 47.619 0.00 0.00 39.12 3.16
1757 4558 5.689383 TCAAACATCTCAAGTAAGGTTGC 57.311 39.130 0.00 0.00 0.00 4.17
1837 4641 2.492019 TGAGCCGATTATGACACGAG 57.508 50.000 0.00 0.00 0.00 4.18
1842 4649 3.677121 CAGCACTATGAGCCGATTATGAC 59.323 47.826 0.00 0.00 0.00 3.06
1845 4652 2.634940 ACCAGCACTATGAGCCGATTAT 59.365 45.455 0.00 0.00 0.00 1.28
1850 4657 1.341209 TCATACCAGCACTATGAGCCG 59.659 52.381 0.00 0.00 0.00 5.52
1865 4672 6.765036 ACCACAGTCAGATTCATTGATCATAC 59.235 38.462 0.00 0.00 0.00 2.39
1868 4675 4.939439 CACCACAGTCAGATTCATTGATCA 59.061 41.667 0.00 0.00 0.00 2.92
1869 4676 4.940046 ACACCACAGTCAGATTCATTGATC 59.060 41.667 0.00 0.00 0.00 2.92
1884 4691 0.396435 TTCCCTGCAGTACACCACAG 59.604 55.000 13.81 0.00 0.00 3.66
1891 4698 1.135286 GCATTTGCTTCCCTGCAGTAC 60.135 52.381 13.81 0.00 44.27 2.73
1896 4703 1.079612 GTGGCATTTGCTTCCCTGC 60.080 57.895 2.12 0.00 41.70 4.85
1897 4704 0.529378 GAGTGGCATTTGCTTCCCTG 59.471 55.000 2.12 0.00 41.70 4.45
1900 4707 1.067354 CCAAGAGTGGCATTTGCTTCC 60.067 52.381 2.12 0.00 38.35 3.46
1924 4731 2.126888 GGGCATCGCAAACACACG 60.127 61.111 0.00 0.00 0.00 4.49
1949 4756 7.867403 ACATAAAAGCGTCAAAACAGATGAAAT 59.133 29.630 0.00 0.00 0.00 2.17
1999 4818 6.293004 AGGAAAAGGAGAATCTCAGTACAG 57.707 41.667 12.79 0.00 33.73 2.74
2053 4873 2.261361 CGCAGGATCGTCACACCA 59.739 61.111 0.00 0.00 0.00 4.17
2089 4909 1.006805 GCCATCCAGGACGATCTCG 60.007 63.158 0.00 0.00 41.22 4.04
2202 5130 6.592870 AGATAGGCCTAACAGGTAAAATGAC 58.407 40.000 18.42 0.00 37.80 3.06
2269 5405 8.154856 ACAACACCTACATGACTACAACTAATT 58.845 33.333 0.00 0.00 0.00 1.40
2270 5406 7.676947 ACAACACCTACATGACTACAACTAAT 58.323 34.615 0.00 0.00 0.00 1.73
2273 5417 5.546621 ACAACACCTACATGACTACAACT 57.453 39.130 0.00 0.00 0.00 3.16
2275 5419 5.011227 TGCTACAACACCTACATGACTACAA 59.989 40.000 0.00 0.00 0.00 2.41
2300 5444 4.957971 GAACATACAATCGTTCCACAGTG 58.042 43.478 0.00 0.00 36.36 3.66
2307 5451 6.142480 CGATAGAGTGGAACATACAATCGTTC 59.858 42.308 0.00 0.00 41.43 3.95
2310 5454 4.383052 GCGATAGAGTGGAACATACAATCG 59.617 45.833 0.00 0.00 41.43 3.34
2319 5463 0.382515 AGAGCGCGATAGAGTGGAAC 59.617 55.000 12.10 0.00 38.56 3.62
2333 5477 1.532437 TGCATCAACACTCAAAGAGCG 59.468 47.619 0.00 0.00 32.04 5.03
2335 5479 5.624344 AAGATGCATCAACACTCAAAGAG 57.376 39.130 27.81 0.00 35.52 2.85
2336 5480 6.263842 AGAAAAGATGCATCAACACTCAAAGA 59.736 34.615 27.81 0.00 0.00 2.52
2365 5509 2.616960 CTATGCACTTGTCACGCCTAA 58.383 47.619 0.00 0.00 0.00 2.69
2366 5510 1.739035 GCTATGCACTTGTCACGCCTA 60.739 52.381 0.00 0.00 0.00 3.93
2367 5511 1.021390 GCTATGCACTTGTCACGCCT 61.021 55.000 0.00 0.00 0.00 5.52
2368 5512 1.425428 GCTATGCACTTGTCACGCC 59.575 57.895 0.00 0.00 0.00 5.68
2370 5514 2.293677 TAGGCTATGCACTTGTCACG 57.706 50.000 0.00 0.00 0.00 4.35
2429 5748 6.621316 TTTGTCGTGTACCAACAATACATT 57.379 33.333 5.86 0.00 37.36 2.71
2539 6015 4.487019 TGGTTCAAGGAAAACGAAACAAC 58.513 39.130 0.00 0.00 33.57 3.32
2653 8623 4.079090 GCGGATGGATAGATCGCG 57.921 61.111 0.00 0.00 37.12 5.87
2655 8625 0.459237 GGCTGCGGATGGATAGATCG 60.459 60.000 0.00 0.00 0.00 3.69
2658 8628 2.217038 GGGGCTGCGGATGGATAGA 61.217 63.158 0.00 0.00 0.00 1.98
2774 8753 6.199393 GGTACAAAACTACAGCAAACTTCTG 58.801 40.000 0.00 0.00 37.56 3.02
2776 8755 5.202640 CGGTACAAAACTACAGCAAACTTC 58.797 41.667 0.00 0.00 0.00 3.01
2804 8783 7.503566 CCAGTTACATGACATCCCTGATAAATT 59.496 37.037 0.00 0.00 0.00 1.82
2807 8786 5.665360 TCCAGTTACATGACATCCCTGATAA 59.335 40.000 0.00 0.00 0.00 1.75
2844 8823 4.341520 AGGTCTTATAGGCAGGTAAAGACG 59.658 45.833 7.26 0.00 44.41 4.18
2857 8836 9.853555 CAGCATAGATAACAAGAGGTCTTATAG 57.146 37.037 0.00 0.00 34.28 1.31
2858 8837 8.807118 CCAGCATAGATAACAAGAGGTCTTATA 58.193 37.037 0.00 0.00 34.28 0.98
2942 8922 8.278729 ATGAAAATCTCAGAGAAGAATTCCAC 57.721 34.615 3.63 0.00 41.47 4.02
2943 8923 9.964354 TTATGAAAATCTCAGAGAAGAATTCCA 57.036 29.630 3.63 0.00 41.47 3.53
2952 8932 9.920133 CGATTATCCTTATGAAAATCTCAGAGA 57.080 33.333 1.54 1.54 37.52 3.10
2990 8970 3.433598 GGCCCACAAGCACAGATAATAGA 60.434 47.826 0.00 0.00 0.00 1.98
2991 8971 2.880890 GGCCCACAAGCACAGATAATAG 59.119 50.000 0.00 0.00 0.00 1.73
3015 8997 7.330946 GCCCACAATTCCTTGAAATAAAACTAC 59.669 37.037 0.00 0.00 36.20 2.73
3075 9057 0.954452 GGCTGGAAAACACTCACCTG 59.046 55.000 0.00 0.00 0.00 4.00
3076 9058 0.550914 TGGCTGGAAAACACTCACCT 59.449 50.000 0.00 0.00 0.00 4.00
3077 9059 1.338020 CTTGGCTGGAAAACACTCACC 59.662 52.381 0.00 0.00 0.00 4.02
3078 9060 2.297701 TCTTGGCTGGAAAACACTCAC 58.702 47.619 0.00 0.00 0.00 3.51
3079 9061 2.727123 TCTTGGCTGGAAAACACTCA 57.273 45.000 0.00 0.00 0.00 3.41
3080 9062 3.569701 TCATTCTTGGCTGGAAAACACTC 59.430 43.478 0.00 0.00 0.00 3.51
3081 9063 3.565307 TCATTCTTGGCTGGAAAACACT 58.435 40.909 0.00 0.00 0.00 3.55
3082 9064 4.037923 TCTTCATTCTTGGCTGGAAAACAC 59.962 41.667 0.00 0.00 0.00 3.32
3083 9065 4.214310 TCTTCATTCTTGGCTGGAAAACA 58.786 39.130 0.00 0.00 0.00 2.83
3084 9066 4.802999 CTCTTCATTCTTGGCTGGAAAAC 58.197 43.478 0.00 0.00 0.00 2.43
3085 9067 3.256631 GCTCTTCATTCTTGGCTGGAAAA 59.743 43.478 0.00 0.00 0.00 2.29
3086 9068 2.821969 GCTCTTCATTCTTGGCTGGAAA 59.178 45.455 0.00 0.00 0.00 3.13
3087 9069 2.224843 TGCTCTTCATTCTTGGCTGGAA 60.225 45.455 0.00 0.00 0.00 3.53
3135 9117 4.463879 CCCGCTGGAGACTGGCTG 62.464 72.222 0.00 0.00 0.00 4.85
3150 9132 2.202623 CGACTGACGCTACAGCCC 60.203 66.667 6.87 0.37 41.06 5.19
3205 9204 1.244019 GGCCTGCAAAACACTCCGAT 61.244 55.000 0.00 0.00 0.00 4.18
3222 9221 1.025041 GATGAGTCAAATTCCCCGGC 58.975 55.000 0.00 0.00 0.00 6.13
3224 9223 2.309528 TCGATGAGTCAAATTCCCCG 57.690 50.000 0.00 0.00 0.00 5.73
3225 9224 3.375299 CACTTCGATGAGTCAAATTCCCC 59.625 47.826 5.16 0.00 0.00 4.81
3227 9226 4.690748 TGACACTTCGATGAGTCAAATTCC 59.309 41.667 22.88 2.91 37.99 3.01
3228 9227 5.406780 ACTGACACTTCGATGAGTCAAATTC 59.593 40.000 24.31 5.07 40.14 2.17
3229 9228 5.300752 ACTGACACTTCGATGAGTCAAATT 58.699 37.500 24.31 13.63 40.14 1.82
3230 9229 4.887748 ACTGACACTTCGATGAGTCAAAT 58.112 39.130 24.31 16.27 40.14 2.32
3231 9230 4.299155 GACTGACACTTCGATGAGTCAAA 58.701 43.478 24.31 9.66 40.14 2.69
3232 9231 3.609409 CGACTGACACTTCGATGAGTCAA 60.609 47.826 24.31 13.31 40.14 3.18
3233 9232 2.095718 CGACTGACACTTCGATGAGTCA 60.096 50.000 23.32 23.32 37.43 3.41
3234 9233 2.510874 CGACTGACACTTCGATGAGTC 58.489 52.381 17.96 17.96 37.43 3.36
3235 9234 1.401670 GCGACTGACACTTCGATGAGT 60.402 52.381 5.16 3.01 37.43 3.41
3237 9236 0.109272 GGCGACTGACACTTCGATGA 60.109 55.000 5.16 0.00 37.43 2.92
3238 9237 1.406219 CGGCGACTGACACTTCGATG 61.406 60.000 0.00 0.00 37.43 3.84
3239 9238 1.154016 CGGCGACTGACACTTCGAT 60.154 57.895 0.00 0.00 37.43 3.59
3240 9239 2.254350 CGGCGACTGACACTTCGA 59.746 61.111 0.00 0.00 37.43 3.71
3241 9240 2.050351 ACGGCGACTGACACTTCG 60.050 61.111 16.62 0.00 38.31 3.79
3242 9241 2.081212 CGACGGCGACTGACACTTC 61.081 63.158 16.62 0.00 40.82 3.01
3243 9242 2.050351 CGACGGCGACTGACACTT 60.050 61.111 16.62 0.00 40.82 3.16
3261 9279 1.140134 CCTTTGGTTCCAGGGAGGGA 61.140 60.000 6.97 0.00 38.24 4.20
3269 9287 1.347062 GGAAATGCCCTTTGGTTCCA 58.653 50.000 0.00 0.00 35.40 3.53
3291 9309 7.149973 CCATATAGTTTAAGCTTACACGCCTA 58.850 38.462 15.27 9.64 0.00 3.93
3306 9324 3.492102 ATCAGTGCGCCCATATAGTTT 57.508 42.857 4.18 0.00 0.00 2.66
3388 9406 3.826157 GGTCTTCCATGTCCACAATTTCA 59.174 43.478 0.00 0.00 0.00 2.69
3398 9416 9.444600 TTTAACTGTAAATAGGTCTTCCATGTC 57.555 33.333 0.00 0.00 35.89 3.06
3537 9558 3.876914 TGACTTTGTGGATCACTGACAAC 59.123 43.478 0.00 0.00 35.11 3.32
3543 9564 3.469008 TCGTTGACTTTGTGGATCACT 57.531 42.857 0.00 0.00 35.11 3.41
3545 9566 4.935205 CCTTATCGTTGACTTTGTGGATCA 59.065 41.667 0.00 0.00 0.00 2.92
3558 9579 1.148498 GGGGCCCTCCTTATCGTTG 59.852 63.158 24.38 0.00 35.33 4.10
3559 9580 0.697854 ATGGGGCCCTCCTTATCGTT 60.698 55.000 25.93 0.00 35.33 3.85
3560 9581 1.073706 ATGGGGCCCTCCTTATCGT 60.074 57.895 25.93 0.38 35.33 3.73
3561 9582 1.376466 CATGGGGCCCTCCTTATCG 59.624 63.158 25.93 0.00 35.33 2.92
3562 9583 0.402121 GACATGGGGCCCTCCTTATC 59.598 60.000 25.93 8.62 35.33 1.75
3563 9584 0.328450 TGACATGGGGCCCTCCTTAT 60.328 55.000 25.93 5.12 35.33 1.73
3564 9585 0.328450 ATGACATGGGGCCCTCCTTA 60.328 55.000 25.93 2.21 35.33 2.69
3565 9586 1.224003 AATGACATGGGGCCCTCCTT 61.224 55.000 25.93 9.53 35.33 3.36
3566 9587 1.623686 AATGACATGGGGCCCTCCT 60.624 57.895 25.93 4.97 35.33 3.69
3567 9588 1.456331 CAATGACATGGGGCCCTCC 60.456 63.158 25.93 6.38 0.00 4.30
3568 9589 0.753111 GACAATGACATGGGGCCCTC 60.753 60.000 25.93 14.07 0.00 4.30
3569 9590 1.307647 GACAATGACATGGGGCCCT 59.692 57.895 25.93 2.38 0.00 5.19
3570 9591 0.397535 ATGACAATGACATGGGGCCC 60.398 55.000 18.17 18.17 0.00 5.80
3571 9592 0.748450 CATGACAATGACATGGGGCC 59.252 55.000 15.90 0.00 40.66 5.80
3572 9593 1.406539 GACATGACAATGACATGGGGC 59.593 52.381 24.42 12.80 46.19 5.80
3573 9594 2.725637 TGACATGACAATGACATGGGG 58.274 47.619 24.42 5.54 46.19 4.96
3598 9619 7.142680 GGTAAAATTGACCAACTTCGATTTCA 58.857 34.615 0.00 0.00 38.25 2.69
3611 9632 1.226184 CGCGCCGGTAAAATTGACC 60.226 57.895 1.90 0.00 0.00 4.02
3673 9694 2.100197 GGGCCAGATAACCTCCAAAAC 58.900 52.381 4.39 0.00 0.00 2.43
3857 9891 3.855689 GTATGCAAATTCACAGTGCCT 57.144 42.857 0.00 0.00 37.48 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.