Multiple sequence alignment - TraesCS3A01G006500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G006500 chr3A 100.000 3094 0 0 1 3094 7292576 7289483 0.000000e+00 5714.0
1 TraesCS3A01G006500 chr3A 95.757 2498 60 9 1 2457 57977617 57980109 0.000000e+00 3984.0
2 TraesCS3A01G006500 chr3A 95.722 2478 62 6 1 2450 685954837 685957298 0.000000e+00 3949.0
3 TraesCS3A01G006500 chr3A 81.007 1648 253 33 4 1624 691597840 691599454 0.000000e+00 1254.0
4 TraesCS3A01G006500 chr3A 80.316 1646 258 37 3 1614 38029133 38027520 0.000000e+00 1184.0
5 TraesCS3A01G006500 chr3A 88.732 71 5 3 3026 3094 671662645 671662576 1.980000e-12 84.2
6 TraesCS3A01G006500 chr3A 85.897 78 10 1 2487 2564 12286752 12286676 7.110000e-12 82.4
7 TraesCS3A01G006500 chr4D 96.548 2491 43 8 1 2450 387335040 387337528 0.000000e+00 4084.0
8 TraesCS3A01G006500 chr5D 96.304 2489 51 9 1 2450 554883351 554880865 0.000000e+00 4048.0
9 TraesCS3A01G006500 chr5D 95.942 2489 51 6 1 2450 8002081 8004558 0.000000e+00 3991.0
10 TraesCS3A01G006500 chr5D 78.571 126 20 6 2451 2576 340742233 340742351 3.310000e-10 76.8
11 TraesCS3A01G006500 chr6D 96.878 2402 55 3 1 2382 273676407 273678808 0.000000e+00 4002.0
12 TraesCS3A01G006500 chr6D 83.186 113 16 3 2453 2564 325381009 325380899 1.960000e-17 100.0
13 TraesCS3A01G006500 chr6D 81.522 92 14 3 2465 2555 320204279 320204190 4.280000e-09 73.1
14 TraesCS3A01G006500 chr2A 96.671 2343 57 4 61 2382 668463827 668461485 0.000000e+00 3875.0
15 TraesCS3A01G006500 chr3D 95.431 1904 46 9 586 2450 461880916 461879015 0.000000e+00 2996.0
16 TraesCS3A01G006500 chr3D 96.013 1254 26 3 1220 2450 578964895 578963643 0.000000e+00 2017.0
17 TraesCS3A01G006500 chr3D 96.780 590 18 1 1 590 461890023 461889435 0.000000e+00 983.0
18 TraesCS3A01G006500 chr7B 80.765 1648 258 37 4 1624 728282223 728283838 0.000000e+00 1232.0
19 TraesCS3A01G006500 chr6B 84.298 121 17 2 2445 2564 54696061 54696180 1.950000e-22 117.0
20 TraesCS3A01G006500 chr6B 81.707 82 10 5 3016 3093 40710487 40710567 2.580000e-06 63.9
21 TraesCS3A01G006500 chrUn 84.483 116 14 4 2451 2564 103547336 103547223 9.070000e-21 111.0
22 TraesCS3A01G006500 chr2B 86.869 99 13 0 2465 2563 526385404 526385502 9.070000e-21 111.0
23 TraesCS3A01G006500 chr6A 83.478 115 17 2 2451 2564 28893104 28893217 4.220000e-19 106.0
24 TraesCS3A01G006500 chr2D 85.149 101 11 4 2465 2564 605726920 605727017 1.960000e-17 100.0
25 TraesCS3A01G006500 chr1B 89.474 57 5 1 3039 3094 323632373 323632429 1.540000e-08 71.3
26 TraesCS3A01G006500 chr1B 85.294 68 6 4 3029 3094 185963848 185963783 1.990000e-07 67.6
27 TraesCS3A01G006500 chr7D 100.000 31 0 0 3064 3094 233614751 233614781 1.200000e-04 58.4
28 TraesCS3A01G006500 chr1D 100.000 31 0 0 3064 3094 195831746 195831716 1.200000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G006500 chr3A 7289483 7292576 3093 True 5714 5714 100.000 1 3094 1 chr3A.!!$R1 3093
1 TraesCS3A01G006500 chr3A 57977617 57980109 2492 False 3984 3984 95.757 1 2457 1 chr3A.!!$F1 2456
2 TraesCS3A01G006500 chr3A 685954837 685957298 2461 False 3949 3949 95.722 1 2450 1 chr3A.!!$F2 2449
3 TraesCS3A01G006500 chr3A 691597840 691599454 1614 False 1254 1254 81.007 4 1624 1 chr3A.!!$F3 1620
4 TraesCS3A01G006500 chr3A 38027520 38029133 1613 True 1184 1184 80.316 3 1614 1 chr3A.!!$R3 1611
5 TraesCS3A01G006500 chr4D 387335040 387337528 2488 False 4084 4084 96.548 1 2450 1 chr4D.!!$F1 2449
6 TraesCS3A01G006500 chr5D 554880865 554883351 2486 True 4048 4048 96.304 1 2450 1 chr5D.!!$R1 2449
7 TraesCS3A01G006500 chr5D 8002081 8004558 2477 False 3991 3991 95.942 1 2450 1 chr5D.!!$F1 2449
8 TraesCS3A01G006500 chr6D 273676407 273678808 2401 False 4002 4002 96.878 1 2382 1 chr6D.!!$F1 2381
9 TraesCS3A01G006500 chr2A 668461485 668463827 2342 True 3875 3875 96.671 61 2382 1 chr2A.!!$R1 2321
10 TraesCS3A01G006500 chr3D 461879015 461880916 1901 True 2996 2996 95.431 586 2450 1 chr3D.!!$R1 1864
11 TraesCS3A01G006500 chr3D 578963643 578964895 1252 True 2017 2017 96.013 1220 2450 1 chr3D.!!$R3 1230
12 TraesCS3A01G006500 chr3D 461889435 461890023 588 True 983 983 96.780 1 590 1 chr3D.!!$R2 589
13 TraesCS3A01G006500 chr7B 728282223 728283838 1615 False 1232 1232 80.765 4 1624 1 chr7B.!!$F1 1620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 1.888512 AGCTTGCATTCCATTCAACGT 59.111 42.857 0.0 0.0 0.00 3.99 F
779 798 3.245984 TGGGAAAGATCTGGTGAGGTCTA 60.246 47.826 0.0 0.0 38.89 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1769 1799 1.777878 TCAAGTTGGGAGTTGGCCTTA 59.222 47.619 3.32 0.0 36.93 2.69 R
2765 2819 0.033208 CTCCTCTGTCTCTGCCTCCT 60.033 60.000 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 4.261994 GCTGACAACTGAGAAGAGAGAACT 60.262 45.833 0.00 0.00 0.00 3.01
196 197 1.888512 AGCTTGCATTCCATTCAACGT 59.111 42.857 0.00 0.00 0.00 3.99
304 305 4.154942 GGTGGCCCAATATTGATGAAGAT 58.845 43.478 17.23 0.00 0.00 2.40
367 368 4.040755 ACTTGGGAGCTTACTGGATGTAT 58.959 43.478 0.00 0.00 0.00 2.29
685 688 8.466798 GTTAGAGGATATTGGCAAGCTTAAAAA 58.533 33.333 5.96 0.00 0.00 1.94
779 798 3.245984 TGGGAAAGATCTGGTGAGGTCTA 60.246 47.826 0.00 0.00 38.89 2.59
1038 1059 5.819991 CCAGCTATGGGTTTCATATATGGT 58.180 41.667 12.78 0.00 43.54 3.55
1247 1275 5.806654 ACATTTAAAGATGGCCTTGTTGT 57.193 34.783 3.32 0.00 34.79 3.32
1759 1789 6.659361 ACTTCATGACAAAATGAGAGATCG 57.341 37.500 0.00 0.00 37.83 3.69
1769 1799 6.652481 ACAAAATGAGAGATCGTGTCTTCATT 59.348 34.615 15.70 15.70 41.32 2.57
1813 1843 8.303156 TGAACAAAAGAGAATGAACAAAGACAA 58.697 29.630 0.00 0.00 0.00 3.18
1837 1867 0.937304 CCACTTGTGGACAGAACACG 59.063 55.000 14.15 0.00 41.64 4.49
2125 2159 1.269723 GTTGTTGGCTGGCTCCTAAAC 59.730 52.381 2.00 0.00 0.00 2.01
2466 2520 5.347012 TCATTGCTATGAATGCATGTACG 57.653 39.130 8.45 0.00 40.34 3.67
2467 2521 3.607422 TTGCTATGAATGCATGTACGC 57.393 42.857 0.00 0.40 40.34 4.42
2468 2522 4.555116 CATTGCTATGAATGCATGTACGCA 60.555 41.667 0.00 3.32 40.34 5.24
2469 2523 2.287644 TGCTATGAATGCATGTACGCAC 59.712 45.455 0.00 0.00 46.56 5.34
2470 2524 2.287644 GCTATGAATGCATGTACGCACA 59.712 45.455 0.00 0.00 46.56 4.57
2471 2525 3.058708 GCTATGAATGCATGTACGCACAT 60.059 43.478 0.00 0.00 46.56 3.21
2472 2526 3.614159 ATGAATGCATGTACGCACATC 57.386 42.857 0.00 1.53 46.56 3.06
2473 2527 2.631267 TGAATGCATGTACGCACATCT 58.369 42.857 0.00 0.00 46.56 2.90
2474 2528 3.009026 TGAATGCATGTACGCACATCTT 58.991 40.909 0.00 0.00 46.56 2.40
2475 2529 4.187694 TGAATGCATGTACGCACATCTTA 58.812 39.130 0.00 0.00 46.56 2.10
2476 2530 4.815846 TGAATGCATGTACGCACATCTTAT 59.184 37.500 0.00 0.00 46.56 1.73
2477 2531 4.997905 ATGCATGTACGCACATCTTATC 57.002 40.909 0.00 0.00 46.56 1.75
2478 2532 4.058721 TGCATGTACGCACATCTTATCT 57.941 40.909 0.00 0.00 43.73 1.98
2479 2533 4.441792 TGCATGTACGCACATCTTATCTT 58.558 39.130 0.00 0.00 43.73 2.40
2480 2534 4.507756 TGCATGTACGCACATCTTATCTTC 59.492 41.667 0.00 0.00 43.73 2.87
2481 2535 4.507756 GCATGTACGCACATCTTATCTTCA 59.492 41.667 0.00 0.00 43.73 3.02
2482 2536 5.178252 GCATGTACGCACATCTTATCTTCAT 59.822 40.000 0.00 0.00 43.73 2.57
2483 2537 6.587651 CATGTACGCACATCTTATCTTCATG 58.412 40.000 0.00 0.00 43.73 3.07
2484 2538 5.901552 TGTACGCACATCTTATCTTCATGA 58.098 37.500 0.00 0.00 0.00 3.07
2485 2539 6.515832 TGTACGCACATCTTATCTTCATGAT 58.484 36.000 0.00 0.00 39.11 2.45
2486 2540 6.642540 TGTACGCACATCTTATCTTCATGATC 59.357 38.462 0.00 0.00 36.65 2.92
2487 2541 5.604565 ACGCACATCTTATCTTCATGATCA 58.395 37.500 0.00 0.00 36.65 2.92
2488 2542 5.464722 ACGCACATCTTATCTTCATGATCAC 59.535 40.000 0.00 0.00 36.65 3.06
2489 2543 5.107182 CGCACATCTTATCTTCATGATCACC 60.107 44.000 0.00 0.00 36.65 4.02
2490 2544 5.996513 GCACATCTTATCTTCATGATCACCT 59.003 40.000 0.00 0.00 36.65 4.00
2491 2545 6.147492 GCACATCTTATCTTCATGATCACCTC 59.853 42.308 0.00 0.00 36.65 3.85
2492 2546 7.443477 CACATCTTATCTTCATGATCACCTCT 58.557 38.462 0.00 0.00 36.65 3.69
2493 2547 7.385478 CACATCTTATCTTCATGATCACCTCTG 59.615 40.741 0.00 0.00 36.65 3.35
2494 2548 7.289549 ACATCTTATCTTCATGATCACCTCTGA 59.710 37.037 0.00 0.00 36.65 3.27
2495 2549 7.287512 TCTTATCTTCATGATCACCTCTGAG 57.712 40.000 0.00 0.00 36.65 3.35
2496 2550 7.065504 TCTTATCTTCATGATCACCTCTGAGA 58.934 38.462 6.17 0.00 36.65 3.27
2497 2551 5.794726 ATCTTCATGATCACCTCTGAGAG 57.205 43.478 6.17 1.57 0.00 3.20
2498 2552 5.774184 TATCTTCATGATCACCTCTGAGAGG 59.226 44.000 26.37 26.37 44.18 3.69
2499 2553 7.698512 TATCTTCATGATCACCTCTGAGAGGC 61.699 46.154 27.77 12.30 43.36 4.70
2500 2554 9.775678 TATCTTCATGATCACCTCTGAGAGGCT 62.776 44.444 27.77 13.14 43.36 4.58
2515 2569 3.558674 GGCTGAGCCGGCATATTAT 57.441 52.632 31.54 6.18 39.62 1.28
2516 2570 1.373570 GGCTGAGCCGGCATATTATC 58.626 55.000 31.54 16.99 39.62 1.75
2517 2571 1.065854 GGCTGAGCCGGCATATTATCT 60.066 52.381 31.54 4.27 39.62 1.98
2518 2572 2.616510 GGCTGAGCCGGCATATTATCTT 60.617 50.000 31.54 3.33 39.62 2.40
2519 2573 2.417933 GCTGAGCCGGCATATTATCTTG 59.582 50.000 31.54 13.61 35.55 3.02
2520 2574 3.866066 GCTGAGCCGGCATATTATCTTGA 60.866 47.826 31.54 0.00 35.55 3.02
2521 2575 3.930336 TGAGCCGGCATATTATCTTGAG 58.070 45.455 31.54 0.00 0.00 3.02
2522 2576 3.578282 TGAGCCGGCATATTATCTTGAGA 59.422 43.478 31.54 0.00 0.00 3.27
2523 2577 4.223700 TGAGCCGGCATATTATCTTGAGAT 59.776 41.667 31.54 0.06 38.51 2.75
2524 2578 5.171339 AGCCGGCATATTATCTTGAGATT 57.829 39.130 31.54 0.00 36.05 2.40
2525 2579 4.940046 AGCCGGCATATTATCTTGAGATTG 59.060 41.667 31.54 0.00 36.05 2.67
2526 2580 4.937620 GCCGGCATATTATCTTGAGATTGA 59.062 41.667 24.80 0.00 36.05 2.57
2527 2581 5.587844 GCCGGCATATTATCTTGAGATTGAT 59.412 40.000 24.80 0.00 36.05 2.57
2528 2582 6.457934 GCCGGCATATTATCTTGAGATTGATG 60.458 42.308 24.80 2.88 36.05 3.07
2529 2583 6.820152 CCGGCATATTATCTTGAGATTGATGA 59.180 38.462 0.00 0.00 36.05 2.92
2530 2584 7.335171 CCGGCATATTATCTTGAGATTGATGAA 59.665 37.037 0.00 0.00 36.05 2.57
2531 2585 8.388853 CGGCATATTATCTTGAGATTGATGAAG 58.611 37.037 0.00 0.00 36.05 3.02
2532 2586 9.228949 GGCATATTATCTTGAGATTGATGAAGT 57.771 33.333 0.00 0.00 36.05 3.01
2536 2590 7.993821 TTATCTTGAGATTGATGAAGTCGTC 57.006 36.000 0.00 0.00 36.05 4.20
2537 2591 5.391312 TCTTGAGATTGATGAAGTCGTCA 57.609 39.130 0.00 0.00 41.67 4.35
2538 2592 5.164233 TCTTGAGATTGATGAAGTCGTCAC 58.836 41.667 2.65 0.00 41.18 3.67
2539 2593 3.501950 TGAGATTGATGAAGTCGTCACG 58.498 45.455 2.65 0.00 41.18 4.35
2540 2594 2.854777 GAGATTGATGAAGTCGTCACGG 59.145 50.000 0.00 0.00 41.18 4.94
2541 2595 2.492088 AGATTGATGAAGTCGTCACGGA 59.508 45.455 0.00 0.00 41.18 4.69
2542 2596 2.347697 TTGATGAAGTCGTCACGGAG 57.652 50.000 0.00 0.00 41.18 4.63
2543 2597 0.526211 TGATGAAGTCGTCACGGAGG 59.474 55.000 0.00 0.00 39.72 4.30
2544 2598 0.809385 GATGAAGTCGTCACGGAGGA 59.191 55.000 0.00 0.00 39.72 3.71
2545 2599 0.526662 ATGAAGTCGTCACGGAGGAC 59.473 55.000 14.83 14.83 44.58 3.85
2548 2602 4.863984 GTCGTCACGGAGGACTTC 57.136 61.111 15.17 1.70 42.09 3.01
2549 2603 1.154263 GTCGTCACGGAGGACTTCG 60.154 63.158 15.17 0.00 42.09 3.79
2550 2604 1.598962 TCGTCACGGAGGACTTCGT 60.599 57.895 0.00 0.00 40.49 3.85
2551 2605 0.320683 TCGTCACGGAGGACTTCGTA 60.321 55.000 5.19 0.00 37.88 3.43
2552 2606 0.096628 CGTCACGGAGGACTTCGTAG 59.903 60.000 5.19 1.32 37.88 3.51
2553 2607 1.163554 GTCACGGAGGACTTCGTAGT 58.836 55.000 5.19 0.00 37.88 2.73
2576 2630 4.208632 GGAACCATGCTCACTCCG 57.791 61.111 0.00 0.00 0.00 4.63
2577 2631 1.596934 GGAACCATGCTCACTCCGA 59.403 57.895 0.00 0.00 0.00 4.55
2578 2632 0.036388 GGAACCATGCTCACTCCGAA 60.036 55.000 0.00 0.00 0.00 4.30
2579 2633 1.363744 GAACCATGCTCACTCCGAAG 58.636 55.000 0.00 0.00 0.00 3.79
2580 2634 0.674895 AACCATGCTCACTCCGAAGC 60.675 55.000 0.00 0.00 0.00 3.86
2581 2635 2.169789 CCATGCTCACTCCGAAGCG 61.170 63.158 0.00 0.00 0.00 4.68
2597 2651 2.891936 CGGCGCTTGCAGCTGATA 60.892 61.111 20.43 1.74 43.29 2.15
2598 2652 2.879070 CGGCGCTTGCAGCTGATAG 61.879 63.158 20.43 14.30 43.29 2.08
2599 2653 1.522355 GGCGCTTGCAGCTGATAGA 60.522 57.895 20.43 0.00 39.60 1.98
2600 2654 1.497223 GGCGCTTGCAGCTGATAGAG 61.497 60.000 20.43 15.57 39.60 2.43
2601 2655 1.497223 GCGCTTGCAGCTGATAGAGG 61.497 60.000 20.43 9.75 39.60 3.69
2602 2656 0.103755 CGCTTGCAGCTGATAGAGGA 59.896 55.000 20.43 0.00 39.60 3.71
2603 2657 1.868469 GCTTGCAGCTGATAGAGGAG 58.132 55.000 20.43 4.60 38.45 3.69
2604 2658 1.411977 GCTTGCAGCTGATAGAGGAGA 59.588 52.381 20.43 0.00 38.45 3.71
2605 2659 2.037511 GCTTGCAGCTGATAGAGGAGAT 59.962 50.000 20.43 0.00 38.45 2.75
2606 2660 3.861886 GCTTGCAGCTGATAGAGGAGATC 60.862 52.174 20.43 0.00 38.45 2.75
2607 2661 2.246469 TGCAGCTGATAGAGGAGATCC 58.754 52.381 20.43 0.00 0.00 3.36
2608 2662 1.202114 GCAGCTGATAGAGGAGATCCG 59.798 57.143 20.43 0.00 42.08 4.18
2609 2663 1.818060 CAGCTGATAGAGGAGATCCGG 59.182 57.143 8.42 0.00 42.08 5.14
2610 2664 1.707989 AGCTGATAGAGGAGATCCGGA 59.292 52.381 6.61 6.61 42.08 5.14
2611 2665 1.816224 GCTGATAGAGGAGATCCGGAC 59.184 57.143 6.12 0.11 42.08 4.79
2612 2666 2.554344 GCTGATAGAGGAGATCCGGACT 60.554 54.545 6.12 6.23 42.08 3.85
2613 2667 3.307833 GCTGATAGAGGAGATCCGGACTA 60.308 52.174 6.12 2.40 42.08 2.59
2614 2668 4.513442 CTGATAGAGGAGATCCGGACTAG 58.487 52.174 6.12 0.00 42.08 2.57
2615 2669 3.264706 TGATAGAGGAGATCCGGACTAGG 59.735 52.174 6.12 0.00 42.08 3.02
2616 2670 0.111639 AGAGGAGATCCGGACTAGGC 59.888 60.000 6.12 0.00 42.08 3.93
2617 2671 1.228306 AGGAGATCCGGACTAGGCG 60.228 63.158 6.12 0.00 42.08 5.52
2618 2672 1.528776 GGAGATCCGGACTAGGCGT 60.529 63.158 6.12 0.00 0.00 5.68
2619 2673 1.655329 GAGATCCGGACTAGGCGTG 59.345 63.158 6.12 0.00 0.00 5.34
2620 2674 0.818445 GAGATCCGGACTAGGCGTGA 60.818 60.000 6.12 0.00 0.00 4.35
2621 2675 0.178987 AGATCCGGACTAGGCGTGAT 60.179 55.000 6.12 0.00 0.00 3.06
2622 2676 0.039074 GATCCGGACTAGGCGTGATG 60.039 60.000 6.12 0.00 0.00 3.07
2623 2677 2.088674 ATCCGGACTAGGCGTGATGC 62.089 60.000 6.12 0.00 45.38 3.91
2624 2678 2.786495 CCGGACTAGGCGTGATGCT 61.786 63.158 0.00 0.00 45.43 3.79
2625 2679 1.299468 CGGACTAGGCGTGATGCTC 60.299 63.158 0.00 0.00 45.43 4.26
2626 2680 1.299468 GGACTAGGCGTGATGCTCG 60.299 63.158 0.00 0.00 45.43 5.03
2627 2681 1.725557 GGACTAGGCGTGATGCTCGA 61.726 60.000 0.00 0.00 45.43 4.04
2628 2682 0.100682 GACTAGGCGTGATGCTCGAA 59.899 55.000 0.00 0.00 45.43 3.71
2629 2683 0.747255 ACTAGGCGTGATGCTCGAAT 59.253 50.000 0.00 0.00 45.43 3.34
2630 2684 1.269309 ACTAGGCGTGATGCTCGAATC 60.269 52.381 0.00 0.00 45.43 2.52
2631 2685 0.317854 TAGGCGTGATGCTCGAATCG 60.318 55.000 0.00 0.00 45.43 3.34
2632 2686 1.878522 GGCGTGATGCTCGAATCGT 60.879 57.895 1.52 0.00 45.43 3.73
2633 2687 1.555538 GCGTGATGCTCGAATCGTC 59.444 57.895 1.52 0.00 41.73 4.20
2643 2697 3.417619 CGAATCGTCGTCGTCCTAG 57.582 57.895 1.33 0.00 42.53 3.02
2644 2698 0.649475 CGAATCGTCGTCGTCCTAGT 59.351 55.000 1.33 0.00 42.53 2.57
2645 2699 1.061711 CGAATCGTCGTCGTCCTAGTT 59.938 52.381 1.33 0.00 42.53 2.24
2646 2700 2.702922 GAATCGTCGTCGTCCTAGTTC 58.297 52.381 1.33 0.00 38.33 3.01
2647 2701 1.012841 ATCGTCGTCGTCCTAGTTCC 58.987 55.000 1.33 0.00 38.33 3.62
2648 2702 1.059994 CGTCGTCGTCCTAGTTCCG 59.940 63.158 0.00 0.00 0.00 4.30
2649 2703 1.427020 GTCGTCGTCCTAGTTCCGG 59.573 63.158 0.00 0.00 0.00 5.14
2650 2704 1.021390 GTCGTCGTCCTAGTTCCGGA 61.021 60.000 0.00 0.00 0.00 5.14
2651 2705 0.107508 TCGTCGTCCTAGTTCCGGAT 60.108 55.000 4.15 0.00 32.25 4.18
2652 2706 0.737219 CGTCGTCCTAGTTCCGGATT 59.263 55.000 4.15 0.00 32.25 3.01
2653 2707 1.268437 CGTCGTCCTAGTTCCGGATTC 60.268 57.143 4.15 1.34 32.25 2.52
2654 2708 1.019673 TCGTCCTAGTTCCGGATTCG 58.980 55.000 4.15 3.14 32.25 3.34
2655 2709 0.594284 CGTCCTAGTTCCGGATTCGC 60.594 60.000 4.15 0.00 32.25 4.70
2656 2710 0.745468 GTCCTAGTTCCGGATTCGCT 59.255 55.000 4.15 4.22 32.25 4.93
2657 2711 1.952296 GTCCTAGTTCCGGATTCGCTA 59.048 52.381 4.15 5.24 32.25 4.26
2658 2712 2.557490 GTCCTAGTTCCGGATTCGCTAT 59.443 50.000 4.15 0.00 32.25 2.97
2659 2713 3.755378 GTCCTAGTTCCGGATTCGCTATA 59.245 47.826 4.15 0.00 32.25 1.31
2660 2714 4.008330 TCCTAGTTCCGGATTCGCTATAG 58.992 47.826 4.15 0.00 34.56 1.31
2661 2715 2.726832 AGTTCCGGATTCGCTATAGC 57.273 50.000 15.09 15.09 37.78 2.97
2662 2716 1.272769 AGTTCCGGATTCGCTATAGCC 59.727 52.381 19.00 4.70 37.91 3.93
2663 2717 0.242825 TTCCGGATTCGCTATAGCCG 59.757 55.000 19.00 14.99 41.53 5.52
2664 2718 4.478195 CGGATTCGCTATAGCCGG 57.522 61.111 19.00 6.22 38.40 6.13
2665 2719 1.153823 CGGATTCGCTATAGCCGGG 60.154 63.158 19.00 5.48 38.40 5.73
2666 2720 1.874345 CGGATTCGCTATAGCCGGGT 61.874 60.000 19.00 12.58 38.40 5.28
2667 2721 0.389948 GGATTCGCTATAGCCGGGTG 60.390 60.000 18.40 0.00 37.91 4.61
2668 2722 0.601558 GATTCGCTATAGCCGGGTGA 59.398 55.000 18.40 7.13 37.91 4.02
2669 2723 0.603569 ATTCGCTATAGCCGGGTGAG 59.396 55.000 18.40 14.51 37.91 3.51
2670 2724 1.461091 TTCGCTATAGCCGGGTGAGG 61.461 60.000 18.40 6.81 37.91 3.86
2671 2725 1.901948 CGCTATAGCCGGGTGAGGA 60.902 63.158 18.40 0.00 37.91 3.71
2672 2726 1.867919 CGCTATAGCCGGGTGAGGAG 61.868 65.000 18.40 8.88 37.91 3.69
2673 2727 1.536943 GCTATAGCCGGGTGAGGAGG 61.537 65.000 18.40 1.59 34.31 4.30
2674 2728 0.112606 CTATAGCCGGGTGAGGAGGA 59.887 60.000 18.40 0.00 0.00 3.71
2675 2729 0.112606 TATAGCCGGGTGAGGAGGAG 59.887 60.000 18.40 0.00 0.00 3.69
2676 2730 2.664835 ATAGCCGGGTGAGGAGGAGG 62.665 65.000 18.40 0.00 0.00 4.30
2677 2731 4.779733 GCCGGGTGAGGAGGAGGA 62.780 72.222 2.18 0.00 0.00 3.71
2678 2732 2.760385 CCGGGTGAGGAGGAGGAC 60.760 72.222 0.00 0.00 0.00 3.85
2679 2733 3.141488 CGGGTGAGGAGGAGGACG 61.141 72.222 0.00 0.00 0.00 4.79
2680 2734 3.462678 GGGTGAGGAGGAGGACGC 61.463 72.222 0.00 0.00 0.00 5.19
2681 2735 3.827898 GGTGAGGAGGAGGACGCG 61.828 72.222 3.53 3.53 0.00 6.01
2682 2736 3.827898 GTGAGGAGGAGGACGCGG 61.828 72.222 12.47 0.00 0.00 6.46
2687 2741 4.899239 GAGGAGGACGCGGCCATG 62.899 72.222 36.60 0.00 0.00 3.66
2690 2744 4.899239 GAGGACGCGGCCATGGAG 62.899 72.222 36.60 9.81 0.00 3.86
2693 2747 4.899239 GACGCGGCCATGGAGGAG 62.899 72.222 18.40 10.34 41.22 3.69
2699 2753 4.201122 GCCATGGAGGAGGGGCAG 62.201 72.222 18.40 0.00 45.70 4.85
2700 2754 2.367377 CCATGGAGGAGGGGCAGA 60.367 66.667 5.56 0.00 41.22 4.26
2701 2755 2.450320 CCATGGAGGAGGGGCAGAG 61.450 68.421 5.56 0.00 41.22 3.35
2702 2756 2.771762 ATGGAGGAGGGGCAGAGC 60.772 66.667 0.00 0.00 0.00 4.09
2720 2774 2.970639 CGAAGGAGGAGGACGCAA 59.029 61.111 0.00 0.00 0.00 4.85
2721 2775 1.446272 CGAAGGAGGAGGACGCAAC 60.446 63.158 0.00 0.00 0.00 4.17
2722 2776 1.079057 GAAGGAGGAGGACGCAACC 60.079 63.158 0.00 0.00 0.00 3.77
2723 2777 1.827399 GAAGGAGGAGGACGCAACCA 61.827 60.000 0.00 0.00 0.00 3.67
2724 2778 1.201429 AAGGAGGAGGACGCAACCAT 61.201 55.000 0.00 0.00 0.00 3.55
2725 2779 1.450312 GGAGGAGGACGCAACCATG 60.450 63.158 0.00 0.00 0.00 3.66
2726 2780 1.450312 GAGGAGGACGCAACCATGG 60.450 63.158 11.19 11.19 0.00 3.66
2727 2781 1.899437 GAGGAGGACGCAACCATGGA 61.899 60.000 21.47 0.00 0.00 3.41
2728 2782 1.450312 GGAGGACGCAACCATGGAG 60.450 63.158 21.47 11.78 0.00 3.86
2729 2783 1.450312 GAGGACGCAACCATGGAGG 60.450 63.158 21.47 11.00 45.67 4.30
2730 2784 1.899437 GAGGACGCAACCATGGAGGA 61.899 60.000 21.47 0.00 41.22 3.71
2731 2785 1.450312 GGACGCAACCATGGAGGAG 60.450 63.158 21.47 13.81 41.22 3.69
2732 2786 1.450312 GACGCAACCATGGAGGAGG 60.450 63.158 21.47 5.89 41.22 4.30
2733 2787 1.899437 GACGCAACCATGGAGGAGGA 61.899 60.000 21.47 0.00 41.22 3.71
2734 2788 1.450312 CGCAACCATGGAGGAGGAC 60.450 63.158 21.47 0.00 41.22 3.85
2735 2789 1.077429 GCAACCATGGAGGAGGACC 60.077 63.158 21.47 0.00 41.22 4.46
2736 2790 1.221840 CAACCATGGAGGAGGACCG 59.778 63.158 21.47 0.00 41.22 4.79
2737 2791 1.995626 AACCATGGAGGAGGACCGG 60.996 63.158 21.47 0.00 41.22 5.28
2738 2792 2.041922 CCATGGAGGAGGACCGGA 60.042 66.667 9.46 0.00 41.22 5.14
2739 2793 2.136878 CCATGGAGGAGGACCGGAG 61.137 68.421 9.46 0.00 41.22 4.63
2740 2794 2.444895 ATGGAGGAGGACCGGAGC 60.445 66.667 9.46 0.00 41.83 4.70
2741 2795 4.779733 TGGAGGAGGACCGGAGCC 62.780 72.222 9.46 9.59 41.83 4.70
2763 2817 4.671569 GCGGCCGCCATAGAGGAG 62.672 72.222 39.89 0.00 41.22 3.69
2764 2818 4.671569 CGGCCGCCATAGAGGAGC 62.672 72.222 14.67 0.00 41.22 4.70
2765 2819 3.550431 GGCCGCCATAGAGGAGCA 61.550 66.667 3.91 0.00 41.22 4.26
2766 2820 2.030262 GCCGCCATAGAGGAGCAG 59.970 66.667 0.00 0.00 41.22 4.24
2767 2821 2.739784 CCGCCATAGAGGAGCAGG 59.260 66.667 0.00 0.00 41.22 4.85
2768 2822 1.834378 CCGCCATAGAGGAGCAGGA 60.834 63.158 0.00 0.00 41.22 3.86
2769 2823 1.664873 CGCCATAGAGGAGCAGGAG 59.335 63.158 0.00 0.00 41.22 3.69
2770 2824 1.814772 CGCCATAGAGGAGCAGGAGG 61.815 65.000 0.00 0.00 41.22 4.30
2771 2825 2.056985 CCATAGAGGAGCAGGAGGC 58.943 63.158 0.00 0.00 41.22 4.70
2780 2834 3.705502 GCAGGAGGCAGAGACAGA 58.294 61.111 0.00 0.00 43.97 3.41
2781 2835 1.516892 GCAGGAGGCAGAGACAGAG 59.483 63.158 0.00 0.00 43.97 3.35
2782 2836 1.958902 GCAGGAGGCAGAGACAGAGG 61.959 65.000 0.00 0.00 43.97 3.69
2783 2837 0.324183 CAGGAGGCAGAGACAGAGGA 60.324 60.000 0.00 0.00 0.00 3.71
2784 2838 0.033208 AGGAGGCAGAGACAGAGGAG 60.033 60.000 0.00 0.00 0.00 3.69
2785 2839 1.042559 GGAGGCAGAGACAGAGGAGG 61.043 65.000 0.00 0.00 0.00 4.30
2786 2840 0.033601 GAGGCAGAGACAGAGGAGGA 60.034 60.000 0.00 0.00 0.00 3.71
2787 2841 0.033208 AGGCAGAGACAGAGGAGGAG 60.033 60.000 0.00 0.00 0.00 3.69
2788 2842 1.042559 GGCAGAGACAGAGGAGGAGG 61.043 65.000 0.00 0.00 0.00 4.30
2789 2843 1.042559 GCAGAGACAGAGGAGGAGGG 61.043 65.000 0.00 0.00 0.00 4.30
2790 2844 0.396974 CAGAGACAGAGGAGGAGGGG 60.397 65.000 0.00 0.00 0.00 4.79
2791 2845 0.553862 AGAGACAGAGGAGGAGGGGA 60.554 60.000 0.00 0.00 0.00 4.81
2792 2846 0.336737 GAGACAGAGGAGGAGGGGAA 59.663 60.000 0.00 0.00 0.00 3.97
2793 2847 0.338120 AGACAGAGGAGGAGGGGAAG 59.662 60.000 0.00 0.00 0.00 3.46
2794 2848 0.689412 GACAGAGGAGGAGGGGAAGG 60.689 65.000 0.00 0.00 0.00 3.46
2795 2849 1.394151 CAGAGGAGGAGGGGAAGGT 59.606 63.158 0.00 0.00 0.00 3.50
2796 2850 0.980231 CAGAGGAGGAGGGGAAGGTG 60.980 65.000 0.00 0.00 0.00 4.00
2797 2851 1.690985 GAGGAGGAGGGGAAGGTGG 60.691 68.421 0.00 0.00 0.00 4.61
2798 2852 3.412408 GGAGGAGGGGAAGGTGGC 61.412 72.222 0.00 0.00 0.00 5.01
2799 2853 3.787001 GAGGAGGGGAAGGTGGCG 61.787 72.222 0.00 0.00 0.00 5.69
2805 2859 3.804329 GGGAAGGTGGCGGCCATA 61.804 66.667 26.68 0.00 35.28 2.74
2806 2860 2.203209 GGAAGGTGGCGGCCATAG 60.203 66.667 26.68 0.00 35.28 2.23
2807 2861 2.742116 GGAAGGTGGCGGCCATAGA 61.742 63.158 26.68 0.00 35.28 1.98
2808 2862 1.227674 GAAGGTGGCGGCCATAGAG 60.228 63.158 26.68 0.00 35.28 2.43
2809 2863 1.686325 GAAGGTGGCGGCCATAGAGA 61.686 60.000 26.68 0.00 35.28 3.10
2810 2864 1.271840 AAGGTGGCGGCCATAGAGAA 61.272 55.000 26.68 0.00 35.28 2.87
2811 2865 1.227674 GGTGGCGGCCATAGAGAAG 60.228 63.158 26.68 0.00 35.28 2.85
2812 2866 1.227674 GTGGCGGCCATAGAGAAGG 60.228 63.158 26.68 0.00 35.28 3.46
2813 2867 1.382557 TGGCGGCCATAGAGAAGGA 60.383 57.895 19.77 0.00 0.00 3.36
2814 2868 0.980754 TGGCGGCCATAGAGAAGGAA 60.981 55.000 19.77 0.00 0.00 3.36
2815 2869 0.250081 GGCGGCCATAGAGAAGGAAG 60.250 60.000 15.62 0.00 0.00 3.46
2816 2870 0.753262 GCGGCCATAGAGAAGGAAGA 59.247 55.000 2.24 0.00 0.00 2.87
2817 2871 1.270041 GCGGCCATAGAGAAGGAAGAG 60.270 57.143 2.24 0.00 0.00 2.85
2818 2872 1.342819 CGGCCATAGAGAAGGAAGAGG 59.657 57.143 2.24 0.00 0.00 3.69
2819 2873 1.071542 GGCCATAGAGAAGGAAGAGGC 59.928 57.143 0.00 0.00 40.08 4.70
2820 2874 1.765314 GCCATAGAGAAGGAAGAGGCA 59.235 52.381 0.00 0.00 40.50 4.75
2821 2875 2.224257 GCCATAGAGAAGGAAGAGGCAG 60.224 54.545 0.00 0.00 40.50 4.85
2822 2876 3.303938 CCATAGAGAAGGAAGAGGCAGA 58.696 50.000 0.00 0.00 0.00 4.26
2823 2877 3.321682 CCATAGAGAAGGAAGAGGCAGAG 59.678 52.174 0.00 0.00 0.00 3.35
2824 2878 1.864669 AGAGAAGGAAGAGGCAGAGG 58.135 55.000 0.00 0.00 0.00 3.69
2825 2879 1.360852 AGAGAAGGAAGAGGCAGAGGA 59.639 52.381 0.00 0.00 0.00 3.71
2826 2880 1.756538 GAGAAGGAAGAGGCAGAGGAG 59.243 57.143 0.00 0.00 0.00 3.69
2827 2881 0.829990 GAAGGAAGAGGCAGAGGAGG 59.170 60.000 0.00 0.00 0.00 4.30
2828 2882 1.271127 AAGGAAGAGGCAGAGGAGGC 61.271 60.000 0.00 0.00 0.00 4.70
2829 2883 1.992277 GGAAGAGGCAGAGGAGGCA 60.992 63.158 0.00 0.00 36.37 4.75
2830 2884 1.521616 GAAGAGGCAGAGGAGGCAG 59.478 63.158 0.00 0.00 36.37 4.85
2831 2885 0.975040 GAAGAGGCAGAGGAGGCAGA 60.975 60.000 0.00 0.00 36.37 4.26
2832 2886 0.326427 AAGAGGCAGAGGAGGCAGAT 60.326 55.000 0.00 0.00 36.37 2.90
2833 2887 0.760189 AGAGGCAGAGGAGGCAGATC 60.760 60.000 0.00 0.00 36.37 2.75
2834 2888 0.760189 GAGGCAGAGGAGGCAGATCT 60.760 60.000 0.00 0.00 36.37 2.75
2835 2889 1.049855 AGGCAGAGGAGGCAGATCTG 61.050 60.000 18.84 18.84 42.70 2.90
2836 2890 1.446791 GCAGAGGAGGCAGATCTGG 59.553 63.158 23.89 5.96 40.64 3.86
2843 2897 3.962421 GGCAGATCTGGCGCATGC 61.962 66.667 30.74 12.54 46.08 4.06
2844 2898 4.309347 GCAGATCTGGCGCATGCG 62.309 66.667 34.83 34.83 44.10 4.73
2845 2899 3.646976 CAGATCTGGCGCATGCGG 61.647 66.667 38.22 23.48 44.10 5.69
2846 2900 4.923942 AGATCTGGCGCATGCGGG 62.924 66.667 38.22 15.19 44.10 6.13
2855 2909 3.204827 GCATGCGGGCTTCGACAT 61.205 61.111 0.00 4.72 42.43 3.06
2856 2910 2.711311 CATGCGGGCTTCGACATG 59.289 61.111 15.67 15.67 42.23 3.21
2857 2911 2.514592 ATGCGGGCTTCGACATGG 60.515 61.111 0.00 0.00 42.43 3.66
2861 2915 4.467084 GGGCTTCGACATGGCCGA 62.467 66.667 8.14 8.14 46.10 5.54
2862 2916 3.195698 GGCTTCGACATGGCCGAC 61.196 66.667 11.21 2.83 36.37 4.79
2863 2917 3.554692 GCTTCGACATGGCCGACG 61.555 66.667 11.21 10.78 35.61 5.12
2864 2918 3.554692 CTTCGACATGGCCGACGC 61.555 66.667 11.21 0.00 35.61 5.19
2865 2919 3.989698 CTTCGACATGGCCGACGCT 62.990 63.158 11.21 0.00 35.61 5.07
2866 2920 2.607668 CTTCGACATGGCCGACGCTA 62.608 60.000 11.21 0.00 35.61 4.26
2867 2921 2.011741 TTCGACATGGCCGACGCTAT 62.012 55.000 11.21 0.00 36.47 2.97
2881 2935 2.695314 GCTATGGCGGAGTTTGAGG 58.305 57.895 0.00 0.00 0.00 3.86
2882 2936 0.107654 GCTATGGCGGAGTTTGAGGT 60.108 55.000 0.00 0.00 0.00 3.85
2883 2937 1.656652 CTATGGCGGAGTTTGAGGTG 58.343 55.000 0.00 0.00 0.00 4.00
2884 2938 0.251916 TATGGCGGAGTTTGAGGTGG 59.748 55.000 0.00 0.00 0.00 4.61
2885 2939 3.056328 GGCGGAGTTTGAGGTGGC 61.056 66.667 0.00 0.00 0.00 5.01
2886 2940 3.056328 GCGGAGTTTGAGGTGGCC 61.056 66.667 0.00 0.00 0.00 5.36
2887 2941 2.429930 CGGAGTTTGAGGTGGCCA 59.570 61.111 0.00 0.00 0.00 5.36
2888 2942 1.228124 CGGAGTTTGAGGTGGCCAA 60.228 57.895 7.24 0.00 0.00 4.52
2889 2943 1.237285 CGGAGTTTGAGGTGGCCAAG 61.237 60.000 7.24 0.00 0.00 3.61
2890 2944 0.178990 GGAGTTTGAGGTGGCCAAGT 60.179 55.000 7.24 0.00 0.00 3.16
2891 2945 0.954452 GAGTTTGAGGTGGCCAAGTG 59.046 55.000 7.24 0.00 0.00 3.16
2892 2946 0.550914 AGTTTGAGGTGGCCAAGTGA 59.449 50.000 7.24 0.00 0.00 3.41
2893 2947 1.064017 AGTTTGAGGTGGCCAAGTGAA 60.064 47.619 7.24 0.00 0.00 3.18
2894 2948 1.754226 GTTTGAGGTGGCCAAGTGAAA 59.246 47.619 7.24 0.76 0.00 2.69
2895 2949 2.151502 TTGAGGTGGCCAAGTGAAAA 57.848 45.000 7.24 0.00 0.00 2.29
2896 2950 2.151502 TGAGGTGGCCAAGTGAAAAA 57.848 45.000 7.24 0.00 0.00 1.94
2897 2951 2.031120 TGAGGTGGCCAAGTGAAAAAG 58.969 47.619 7.24 0.00 0.00 2.27
2898 2952 1.341209 GAGGTGGCCAAGTGAAAAAGG 59.659 52.381 7.24 0.00 0.00 3.11
2899 2953 0.249868 GGTGGCCAAGTGAAAAAGGC 60.250 55.000 7.24 0.00 46.28 4.35
2901 2955 4.653555 GCCAAGTGAAAAAGGCGG 57.346 55.556 0.00 0.00 37.41 6.13
2902 2956 1.664649 GCCAAGTGAAAAAGGCGGC 60.665 57.895 0.00 0.00 37.41 6.53
2903 2957 1.371635 CCAAGTGAAAAAGGCGGCG 60.372 57.895 0.51 0.51 0.00 6.46
2904 2958 1.371635 CAAGTGAAAAAGGCGGCGG 60.372 57.895 9.78 0.00 0.00 6.13
2905 2959 1.527380 AAGTGAAAAAGGCGGCGGA 60.527 52.632 9.78 0.00 0.00 5.54
2906 2960 1.515521 AAGTGAAAAAGGCGGCGGAG 61.516 55.000 9.78 0.00 0.00 4.63
2907 2961 2.671619 TGAAAAAGGCGGCGGAGG 60.672 61.111 9.78 0.00 0.00 4.30
2908 2962 2.671963 GAAAAAGGCGGCGGAGGT 60.672 61.111 9.78 0.00 0.00 3.85
2909 2963 2.978018 GAAAAAGGCGGCGGAGGTG 61.978 63.158 9.78 0.00 0.00 4.00
2917 2971 3.319198 GGCGGAGGTGGAGTCCAA 61.319 66.667 15.09 0.00 34.18 3.53
2918 2972 2.047179 GCGGAGGTGGAGTCCAAC 60.047 66.667 20.35 20.35 42.50 3.77
2919 2973 2.663196 CGGAGGTGGAGTCCAACC 59.337 66.667 24.08 20.60 43.36 3.77
2920 2974 2.663196 GGAGGTGGAGTCCAACCG 59.337 66.667 24.08 0.00 43.36 4.44
2921 2975 2.214920 GGAGGTGGAGTCCAACCGT 61.215 63.158 24.08 6.07 43.36 4.83
2922 2976 1.292541 GAGGTGGAGTCCAACCGTC 59.707 63.158 24.08 12.10 43.36 4.79
2923 2977 2.048503 GGTGGAGTCCAACCGTCG 60.049 66.667 17.13 0.00 34.66 5.12
2924 2978 2.732658 GTGGAGTCCAACCGTCGT 59.267 61.111 15.09 0.00 34.18 4.34
2925 2979 1.068585 GTGGAGTCCAACCGTCGTT 59.931 57.895 15.09 0.00 34.18 3.85
2926 2980 0.531311 GTGGAGTCCAACCGTCGTTT 60.531 55.000 15.09 0.00 34.18 3.60
2927 2981 0.531090 TGGAGTCCAACCGTCGTTTG 60.531 55.000 10.20 0.00 0.00 2.93
2928 2982 1.568025 GAGTCCAACCGTCGTTTGC 59.432 57.895 0.00 0.00 0.00 3.68
2929 2983 0.878961 GAGTCCAACCGTCGTTTGCT 60.879 55.000 0.00 0.00 0.00 3.91
2930 2984 1.157870 AGTCCAACCGTCGTTTGCTG 61.158 55.000 0.00 0.00 0.00 4.41
2931 2985 2.051345 CCAACCGTCGTTTGCTGC 60.051 61.111 0.00 0.00 0.00 5.25
2932 2986 2.712539 CAACCGTCGTTTGCTGCA 59.287 55.556 0.00 0.00 0.00 4.41
2933 2987 1.654137 CAACCGTCGTTTGCTGCAC 60.654 57.895 0.00 0.00 0.00 4.57
2934 2988 2.830285 AACCGTCGTTTGCTGCACC 61.830 57.895 0.00 0.00 0.00 5.01
2935 2989 3.276091 CCGTCGTTTGCTGCACCA 61.276 61.111 0.00 0.00 0.00 4.17
2936 2990 2.249309 CGTCGTTTGCTGCACCAG 59.751 61.111 0.00 0.00 34.12 4.00
2937 2991 2.534019 CGTCGTTTGCTGCACCAGT 61.534 57.895 0.00 0.00 33.43 4.00
2938 2992 1.009675 GTCGTTTGCTGCACCAGTG 60.010 57.895 0.00 0.00 33.43 3.66
2939 2993 2.186160 TCGTTTGCTGCACCAGTGG 61.186 57.895 7.91 7.91 33.43 4.00
2940 2994 2.186160 CGTTTGCTGCACCAGTGGA 61.186 57.895 18.40 0.00 33.43 4.02
2941 2995 1.723608 CGTTTGCTGCACCAGTGGAA 61.724 55.000 18.40 0.00 33.43 3.53
2942 2996 0.459489 GTTTGCTGCACCAGTGGAAA 59.541 50.000 18.40 1.27 33.43 3.13
2943 2997 0.746063 TTTGCTGCACCAGTGGAAAG 59.254 50.000 18.40 10.92 33.43 2.62
2944 2998 1.737355 TTGCTGCACCAGTGGAAAGC 61.737 55.000 18.40 20.19 33.43 3.51
2945 2999 2.949106 CTGCACCAGTGGAAAGCG 59.051 61.111 18.40 9.28 0.00 4.68
2946 3000 1.597854 CTGCACCAGTGGAAAGCGA 60.598 57.895 18.40 6.99 0.00 4.93
2947 3001 1.153066 TGCACCAGTGGAAAGCGAA 60.153 52.632 18.40 0.00 0.00 4.70
2948 3002 1.165907 TGCACCAGTGGAAAGCGAAG 61.166 55.000 18.40 0.00 0.00 3.79
2949 3003 0.884704 GCACCAGTGGAAAGCGAAGA 60.885 55.000 18.40 0.00 0.00 2.87
2950 3004 1.813513 CACCAGTGGAAAGCGAAGAT 58.186 50.000 18.40 0.00 0.00 2.40
2951 3005 1.734465 CACCAGTGGAAAGCGAAGATC 59.266 52.381 18.40 0.00 0.00 2.75
2952 3006 1.002366 CCAGTGGAAAGCGAAGATCG 58.998 55.000 1.68 0.00 43.89 3.69
2953 3007 1.404181 CCAGTGGAAAGCGAAGATCGA 60.404 52.381 1.68 0.00 43.74 3.59
2954 3008 1.656095 CAGTGGAAAGCGAAGATCGAC 59.344 52.381 3.61 0.00 43.74 4.20
2955 3009 1.272490 AGTGGAAAGCGAAGATCGACA 59.728 47.619 3.61 0.00 43.74 4.35
2956 3010 2.066262 GTGGAAAGCGAAGATCGACAA 58.934 47.619 3.61 0.00 43.74 3.18
2957 3011 2.092838 GTGGAAAGCGAAGATCGACAAG 59.907 50.000 3.61 0.00 43.74 3.16
2958 3012 1.061276 GGAAAGCGAAGATCGACAAGC 59.939 52.381 3.61 0.00 43.74 4.01
2959 3013 1.996191 GAAAGCGAAGATCGACAAGCT 59.004 47.619 3.61 0.00 43.74 3.74
2960 3014 1.634702 AAGCGAAGATCGACAAGCTC 58.365 50.000 3.61 0.00 43.74 4.09
2961 3015 0.814457 AGCGAAGATCGACAAGCTCT 59.186 50.000 3.61 0.00 43.74 4.09
2962 3016 1.203523 AGCGAAGATCGACAAGCTCTT 59.796 47.619 3.61 0.00 43.74 2.85
2963 3017 1.586123 GCGAAGATCGACAAGCTCTTC 59.414 52.381 13.39 13.39 44.43 2.87
2964 3018 2.868662 CGAAGATCGACAAGCTCTTCA 58.131 47.619 20.13 0.00 46.80 3.02
2965 3019 2.596419 CGAAGATCGACAAGCTCTTCAC 59.404 50.000 20.13 1.93 46.80 3.18
2966 3020 3.671971 CGAAGATCGACAAGCTCTTCACT 60.672 47.826 20.13 0.00 46.80 3.41
2967 3021 3.502191 AGATCGACAAGCTCTTCACTC 57.498 47.619 0.00 0.00 0.00 3.51
2968 3022 2.822561 AGATCGACAAGCTCTTCACTCA 59.177 45.455 0.00 0.00 0.00 3.41
2969 3023 2.423926 TCGACAAGCTCTTCACTCAC 57.576 50.000 0.00 0.00 0.00 3.51
2970 3024 1.681264 TCGACAAGCTCTTCACTCACA 59.319 47.619 0.00 0.00 0.00 3.58
2971 3025 2.297315 TCGACAAGCTCTTCACTCACAT 59.703 45.455 0.00 0.00 0.00 3.21
2972 3026 2.411069 CGACAAGCTCTTCACTCACATG 59.589 50.000 0.00 0.00 0.00 3.21
2973 3027 3.657634 GACAAGCTCTTCACTCACATGA 58.342 45.455 0.00 0.00 0.00 3.07
2974 3028 4.060900 GACAAGCTCTTCACTCACATGAA 58.939 43.478 0.00 0.00 37.08 2.57
2981 3035 2.724977 TCACTCACATGAAGTCCGAC 57.275 50.000 0.00 0.00 0.00 4.79
2982 3036 1.068541 TCACTCACATGAAGTCCGACG 60.069 52.381 0.00 0.00 0.00 5.12
2983 3037 1.068541 CACTCACATGAAGTCCGACGA 60.069 52.381 0.00 0.00 0.00 4.20
2984 3038 1.200252 ACTCACATGAAGTCCGACGAG 59.800 52.381 0.00 0.00 0.00 4.18
2985 3039 0.526211 TCACATGAAGTCCGACGAGG 59.474 55.000 0.00 0.00 42.97 4.63
2996 3050 4.593864 GACGAGGAGCCGGGCATC 62.594 72.222 23.09 15.03 0.00 3.91
2998 3052 4.899239 CGAGGAGCCGGGCATCAC 62.899 72.222 23.09 10.09 0.00 3.06
2999 3053 3.474570 GAGGAGCCGGGCATCACT 61.475 66.667 23.09 12.87 0.00 3.41
3000 3054 3.011517 AGGAGCCGGGCATCACTT 61.012 61.111 23.09 0.00 0.00 3.16
3001 3055 2.825836 GGAGCCGGGCATCACTTG 60.826 66.667 23.09 0.00 0.00 3.16
3002 3056 2.825836 GAGCCGGGCATCACTTGG 60.826 66.667 23.09 0.00 0.00 3.61
3013 3067 4.348198 GCATCACTTGGCTCTAGTTTTC 57.652 45.455 0.00 0.00 0.00 2.29
3014 3068 3.127721 GCATCACTTGGCTCTAGTTTTCC 59.872 47.826 0.00 0.00 0.00 3.13
3015 3069 4.326826 CATCACTTGGCTCTAGTTTTCCA 58.673 43.478 0.00 0.00 0.00 3.53
3016 3070 3.740115 TCACTTGGCTCTAGTTTTCCAC 58.260 45.455 0.00 0.00 0.00 4.02
3017 3071 3.391296 TCACTTGGCTCTAGTTTTCCACT 59.609 43.478 0.00 0.00 39.87 4.00
3018 3072 3.748568 CACTTGGCTCTAGTTTTCCACTC 59.251 47.826 0.00 0.00 36.88 3.51
3019 3073 3.244596 ACTTGGCTCTAGTTTTCCACTCC 60.245 47.826 0.00 0.00 36.88 3.85
3020 3074 1.628846 TGGCTCTAGTTTTCCACTCCC 59.371 52.381 0.00 0.00 36.88 4.30
3021 3075 1.909986 GGCTCTAGTTTTCCACTCCCT 59.090 52.381 0.00 0.00 36.88 4.20
3022 3076 2.093394 GGCTCTAGTTTTCCACTCCCTC 60.093 54.545 0.00 0.00 36.88 4.30
3023 3077 2.835156 GCTCTAGTTTTCCACTCCCTCT 59.165 50.000 0.00 0.00 36.88 3.69
3024 3078 4.024670 GCTCTAGTTTTCCACTCCCTCTA 58.975 47.826 0.00 0.00 36.88 2.43
3025 3079 4.098807 GCTCTAGTTTTCCACTCCCTCTAG 59.901 50.000 0.00 0.00 36.88 2.43
3026 3080 5.265989 CTCTAGTTTTCCACTCCCTCTAGT 58.734 45.833 0.00 0.00 36.88 2.57
3027 3081 5.652324 TCTAGTTTTCCACTCCCTCTAGTT 58.348 41.667 0.00 0.00 36.88 2.24
3028 3082 6.082707 TCTAGTTTTCCACTCCCTCTAGTTT 58.917 40.000 0.00 0.00 36.88 2.66
3029 3083 5.648330 AGTTTTCCACTCCCTCTAGTTTT 57.352 39.130 0.00 0.00 0.00 2.43
3030 3084 6.014771 AGTTTTCCACTCCCTCTAGTTTTT 57.985 37.500 0.00 0.00 0.00 1.94
3031 3085 6.062749 AGTTTTCCACTCCCTCTAGTTTTTC 58.937 40.000 0.00 0.00 0.00 2.29
3032 3086 5.640158 TTTCCACTCCCTCTAGTTTTTCA 57.360 39.130 0.00 0.00 0.00 2.69
3033 3087 4.618920 TCCACTCCCTCTAGTTTTTCAC 57.381 45.455 0.00 0.00 0.00 3.18
3034 3088 4.232091 TCCACTCCCTCTAGTTTTTCACT 58.768 43.478 0.00 0.00 39.87 3.41
3035 3089 4.283722 TCCACTCCCTCTAGTTTTTCACTC 59.716 45.833 0.00 0.00 36.88 3.51
3036 3090 4.284746 CCACTCCCTCTAGTTTTTCACTCT 59.715 45.833 0.00 0.00 36.88 3.24
3037 3091 5.474825 CACTCCCTCTAGTTTTTCACTCTC 58.525 45.833 0.00 0.00 36.88 3.20
3038 3092 4.528987 ACTCCCTCTAGTTTTTCACTCTCC 59.471 45.833 0.00 0.00 36.88 3.71
3039 3093 4.489737 TCCCTCTAGTTTTTCACTCTCCA 58.510 43.478 0.00 0.00 36.88 3.86
3040 3094 5.094387 TCCCTCTAGTTTTTCACTCTCCAT 58.906 41.667 0.00 0.00 36.88 3.41
3041 3095 6.261435 TCCCTCTAGTTTTTCACTCTCCATA 58.739 40.000 0.00 0.00 36.88 2.74
3042 3096 6.903534 TCCCTCTAGTTTTTCACTCTCCATAT 59.096 38.462 0.00 0.00 36.88 1.78
3043 3097 7.403231 TCCCTCTAGTTTTTCACTCTCCATATT 59.597 37.037 0.00 0.00 36.88 1.28
3044 3098 8.705594 CCCTCTAGTTTTTCACTCTCCATATTA 58.294 37.037 0.00 0.00 36.88 0.98
3045 3099 9.757227 CCTCTAGTTTTTCACTCTCCATATTAG 57.243 37.037 0.00 0.00 36.88 1.73
3070 3124 9.793259 AGTTTTATCCTAAGTCAACTTCATGAA 57.207 29.630 8.12 8.12 37.40 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 1.606668 CACAAGCACGAGCCCTTTTTA 59.393 47.619 0.00 0.00 43.56 1.52
196 197 2.703536 TCAAAGCTGGGAAGTGTGACTA 59.296 45.455 0.00 0.00 0.00 2.59
251 252 1.542492 GAGTAGGACCGTCCAAGTCA 58.458 55.000 19.95 0.00 39.61 3.41
304 305 4.656112 AGGACTCCTGAACTCTTTTCTTCA 59.344 41.667 0.00 0.00 29.57 3.02
367 368 5.061179 CAGTCCATGCATCTGTCATGATTA 58.939 41.667 0.00 0.00 42.84 1.75
685 688 5.326069 ACAGTGACATAGTAGAGTCCACTT 58.674 41.667 0.00 0.00 33.89 3.16
903 922 1.871039 CACTTCGGTTGGAATCACGTT 59.129 47.619 0.00 0.00 33.26 3.99
1247 1275 5.045651 TCTCTAACCATCTTCTCCATGCAAA 60.046 40.000 0.00 0.00 0.00 3.68
1759 1789 3.440522 GGAGTTGGCCTTAATGAAGACAC 59.559 47.826 3.32 0.00 34.25 3.67
1769 1799 1.777878 TCAAGTTGGGAGTTGGCCTTA 59.222 47.619 3.32 0.00 36.93 2.69
1837 1867 3.076621 TCATCTTCCACAACATCTGCAC 58.923 45.455 0.00 0.00 0.00 4.57
2125 2159 8.646900 AGAATAGCAGAAATAAGGACTTAGGAG 58.353 37.037 0.00 0.00 0.00 3.69
2211 2245 7.601886 GCATATAGCACTGTTCAGAGTTCATAT 59.398 37.037 6.83 2.19 44.79 1.78
2405 2458 4.576216 TTGAAATAGCGCAACCTTCAAA 57.424 36.364 11.47 2.01 34.10 2.69
2459 2513 7.117379 ATCATGAAGATAAGATGTGCGTACATG 59.883 37.037 24.27 6.50 40.45 3.21
2460 2514 7.157347 ATCATGAAGATAAGATGTGCGTACAT 58.843 34.615 19.53 19.53 41.91 2.29
2461 2515 5.901552 TCATGAAGATAAGATGTGCGTACA 58.098 37.500 9.28 9.28 41.89 2.90
2462 2516 6.642540 TGATCATGAAGATAAGATGTGCGTAC 59.357 38.462 0.00 0.00 37.00 3.67
2463 2517 6.642540 GTGATCATGAAGATAAGATGTGCGTA 59.357 38.462 0.00 0.00 37.00 4.42
2464 2518 5.464722 GTGATCATGAAGATAAGATGTGCGT 59.535 40.000 0.00 0.00 37.00 5.24
2465 2519 5.107182 GGTGATCATGAAGATAAGATGTGCG 60.107 44.000 0.00 0.00 37.00 5.34
2466 2520 5.996513 AGGTGATCATGAAGATAAGATGTGC 59.003 40.000 0.00 0.00 37.00 4.57
2467 2521 7.385478 CAGAGGTGATCATGAAGATAAGATGTG 59.615 40.741 0.00 0.00 37.00 3.21
2468 2522 7.289549 TCAGAGGTGATCATGAAGATAAGATGT 59.710 37.037 0.00 0.00 37.00 3.06
2469 2523 7.668492 TCAGAGGTGATCATGAAGATAAGATG 58.332 38.462 0.00 0.00 37.00 2.90
2470 2524 7.729431 TCTCAGAGGTGATCATGAAGATAAGAT 59.271 37.037 0.00 0.00 37.00 2.40
2471 2525 7.065504 TCTCAGAGGTGATCATGAAGATAAGA 58.934 38.462 0.00 0.00 37.00 2.10
2472 2526 7.287512 TCTCAGAGGTGATCATGAAGATAAG 57.712 40.000 0.00 0.00 37.00 1.73
2473 2527 6.267242 CCTCTCAGAGGTGATCATGAAGATAA 59.733 42.308 13.31 0.00 44.25 1.75
2474 2528 5.774184 CCTCTCAGAGGTGATCATGAAGATA 59.226 44.000 13.31 0.00 44.25 1.98
2475 2529 4.589798 CCTCTCAGAGGTGATCATGAAGAT 59.410 45.833 13.31 0.00 44.25 2.40
2476 2530 3.959449 CCTCTCAGAGGTGATCATGAAGA 59.041 47.826 13.31 0.00 44.25 2.87
2477 2531 4.325028 CCTCTCAGAGGTGATCATGAAG 57.675 50.000 13.31 0.00 44.25 3.02
2497 2551 1.065854 AGATAATATGCCGGCTCAGCC 60.066 52.381 29.70 5.22 46.75 4.85
2498 2552 2.393271 AGATAATATGCCGGCTCAGC 57.607 50.000 29.70 10.58 0.00 4.26
2499 2553 3.930336 TCAAGATAATATGCCGGCTCAG 58.070 45.455 29.70 12.02 0.00 3.35
2500 2554 3.578282 TCTCAAGATAATATGCCGGCTCA 59.422 43.478 29.70 15.91 0.00 4.26
2501 2555 4.193826 TCTCAAGATAATATGCCGGCTC 57.806 45.455 29.70 15.82 0.00 4.70
2502 2556 4.833478 ATCTCAAGATAATATGCCGGCT 57.167 40.909 29.70 15.76 32.01 5.52
2503 2557 4.937620 TCAATCTCAAGATAATATGCCGGC 59.062 41.667 22.73 22.73 33.73 6.13
2504 2558 6.820152 TCATCAATCTCAAGATAATATGCCGG 59.180 38.462 0.00 0.00 33.73 6.13
2505 2559 7.838771 TCATCAATCTCAAGATAATATGCCG 57.161 36.000 0.00 0.00 33.73 5.69
2506 2560 9.228949 ACTTCATCAATCTCAAGATAATATGCC 57.771 33.333 0.00 0.00 33.73 4.40
2510 2564 9.684448 GACGACTTCATCAATCTCAAGATAATA 57.316 33.333 0.00 0.00 33.73 0.98
2511 2565 8.200120 TGACGACTTCATCAATCTCAAGATAAT 58.800 33.333 0.00 0.00 33.73 1.28
2512 2566 7.489435 GTGACGACTTCATCAATCTCAAGATAA 59.511 37.037 0.00 0.00 36.32 1.75
2513 2567 6.975197 GTGACGACTTCATCAATCTCAAGATA 59.025 38.462 0.00 0.00 36.32 1.98
2514 2568 5.809562 GTGACGACTTCATCAATCTCAAGAT 59.190 40.000 0.00 0.00 36.32 2.40
2515 2569 5.164233 GTGACGACTTCATCAATCTCAAGA 58.836 41.667 0.00 0.00 36.32 3.02
2516 2570 4.031089 CGTGACGACTTCATCAATCTCAAG 59.969 45.833 0.00 0.00 36.32 3.02
2517 2571 3.920412 CGTGACGACTTCATCAATCTCAA 59.080 43.478 0.00 0.00 36.32 3.02
2518 2572 3.501950 CGTGACGACTTCATCAATCTCA 58.498 45.455 0.00 0.00 36.32 3.27
2519 2573 2.854777 CCGTGACGACTTCATCAATCTC 59.145 50.000 6.54 0.00 36.32 2.75
2520 2574 2.492088 TCCGTGACGACTTCATCAATCT 59.508 45.455 6.54 0.00 36.32 2.40
2521 2575 2.854777 CTCCGTGACGACTTCATCAATC 59.145 50.000 6.54 0.00 36.32 2.67
2522 2576 2.417379 CCTCCGTGACGACTTCATCAAT 60.417 50.000 6.54 0.00 36.32 2.57
2523 2577 1.067846 CCTCCGTGACGACTTCATCAA 60.068 52.381 6.54 0.00 36.32 2.57
2524 2578 0.526211 CCTCCGTGACGACTTCATCA 59.474 55.000 6.54 0.00 36.32 3.07
2525 2579 0.809385 TCCTCCGTGACGACTTCATC 59.191 55.000 6.54 0.00 36.32 2.92
2526 2580 0.526662 GTCCTCCGTGACGACTTCAT 59.473 55.000 6.54 0.00 36.32 2.57
2527 2581 0.536687 AGTCCTCCGTGACGACTTCA 60.537 55.000 6.54 0.00 40.26 3.02
2528 2582 0.597072 AAGTCCTCCGTGACGACTTC 59.403 55.000 6.54 0.00 41.82 3.01
2529 2583 0.597072 GAAGTCCTCCGTGACGACTT 59.403 55.000 6.54 8.13 46.74 3.01
2530 2584 1.575576 CGAAGTCCTCCGTGACGACT 61.576 60.000 6.54 0.00 40.26 4.18
2531 2585 1.154263 CGAAGTCCTCCGTGACGAC 60.154 63.158 6.54 0.00 40.26 4.34
2532 2586 0.320683 TACGAAGTCCTCCGTGACGA 60.321 55.000 6.54 0.00 43.93 4.20
2533 2587 0.096628 CTACGAAGTCCTCCGTGACG 59.903 60.000 0.00 0.00 43.93 4.35
2534 2588 1.130186 GACTACGAAGTCCTCCGTGAC 59.870 57.143 0.00 0.00 45.50 3.67
2535 2589 1.446907 GACTACGAAGTCCTCCGTGA 58.553 55.000 0.00 0.00 45.50 4.35
2536 2590 3.992636 GACTACGAAGTCCTCCGTG 57.007 57.895 0.00 0.00 45.50 4.94
2549 2603 1.084289 GCATGGTTCCCGTTGACTAC 58.916 55.000 0.00 0.00 0.00 2.73
2550 2604 0.981183 AGCATGGTTCCCGTTGACTA 59.019 50.000 0.00 0.00 0.00 2.59
2551 2605 0.321653 GAGCATGGTTCCCGTTGACT 60.322 55.000 0.00 0.00 0.00 3.41
2552 2606 0.605319 TGAGCATGGTTCCCGTTGAC 60.605 55.000 0.00 0.00 0.00 3.18
2553 2607 0.605319 GTGAGCATGGTTCCCGTTGA 60.605 55.000 0.00 0.00 0.00 3.18
2554 2608 0.606401 AGTGAGCATGGTTCCCGTTG 60.606 55.000 0.00 0.00 0.00 4.10
2555 2609 0.321653 GAGTGAGCATGGTTCCCGTT 60.322 55.000 0.00 0.00 0.00 4.44
2556 2610 1.296715 GAGTGAGCATGGTTCCCGT 59.703 57.895 0.00 0.00 0.00 5.28
2557 2611 1.450312 GGAGTGAGCATGGTTCCCG 60.450 63.158 0.00 0.00 0.00 5.14
2558 2612 1.450312 CGGAGTGAGCATGGTTCCC 60.450 63.158 8.22 3.02 0.00 3.97
2559 2613 0.036388 TTCGGAGTGAGCATGGTTCC 60.036 55.000 0.00 0.99 0.00 3.62
2560 2614 1.363744 CTTCGGAGTGAGCATGGTTC 58.636 55.000 0.00 0.00 0.00 3.62
2561 2615 0.674895 GCTTCGGAGTGAGCATGGTT 60.675 55.000 0.00 0.00 37.61 3.67
2562 2616 1.078848 GCTTCGGAGTGAGCATGGT 60.079 57.895 0.00 0.00 37.61 3.55
2563 2617 2.169789 CGCTTCGGAGTGAGCATGG 61.170 63.158 0.00 0.00 37.55 3.66
2564 2618 3.392431 CGCTTCGGAGTGAGCATG 58.608 61.111 0.00 0.00 37.55 4.06
2585 2639 3.306225 GGATCTCCTCTATCAGCTGCAAG 60.306 52.174 9.47 8.83 0.00 4.01
2586 2640 2.632028 GGATCTCCTCTATCAGCTGCAA 59.368 50.000 9.47 0.00 0.00 4.08
2587 2641 2.246469 GGATCTCCTCTATCAGCTGCA 58.754 52.381 9.47 0.00 0.00 4.41
2588 2642 1.202114 CGGATCTCCTCTATCAGCTGC 59.798 57.143 9.47 0.00 0.00 5.25
2589 2643 1.818060 CCGGATCTCCTCTATCAGCTG 59.182 57.143 7.63 7.63 0.00 4.24
2590 2644 1.707989 TCCGGATCTCCTCTATCAGCT 59.292 52.381 0.00 0.00 0.00 4.24
2591 2645 1.816224 GTCCGGATCTCCTCTATCAGC 59.184 57.143 7.81 0.00 0.00 4.26
2592 2646 3.433306 AGTCCGGATCTCCTCTATCAG 57.567 52.381 7.81 0.00 0.00 2.90
2593 2647 3.264706 CCTAGTCCGGATCTCCTCTATCA 59.735 52.174 7.81 0.00 0.00 2.15
2594 2648 3.881220 CCTAGTCCGGATCTCCTCTATC 58.119 54.545 7.81 0.00 0.00 2.08
2595 2649 2.025699 GCCTAGTCCGGATCTCCTCTAT 60.026 54.545 7.81 0.00 0.00 1.98
2596 2650 1.351683 GCCTAGTCCGGATCTCCTCTA 59.648 57.143 7.81 1.79 0.00 2.43
2597 2651 0.111639 GCCTAGTCCGGATCTCCTCT 59.888 60.000 7.81 0.35 0.00 3.69
2598 2652 1.238625 CGCCTAGTCCGGATCTCCTC 61.239 65.000 7.81 0.00 0.00 3.71
2599 2653 1.228306 CGCCTAGTCCGGATCTCCT 60.228 63.158 7.81 1.69 0.00 3.69
2600 2654 1.528776 ACGCCTAGTCCGGATCTCC 60.529 63.158 7.81 0.00 0.00 3.71
2601 2655 0.818445 TCACGCCTAGTCCGGATCTC 60.818 60.000 7.81 0.00 0.00 2.75
2602 2656 0.178987 ATCACGCCTAGTCCGGATCT 60.179 55.000 7.81 9.69 0.00 2.75
2603 2657 0.039074 CATCACGCCTAGTCCGGATC 60.039 60.000 7.81 0.93 0.00 3.36
2604 2658 2.041976 CATCACGCCTAGTCCGGAT 58.958 57.895 7.81 0.00 0.00 4.18
2605 2659 2.782222 GCATCACGCCTAGTCCGGA 61.782 63.158 0.00 0.00 32.94 5.14
2606 2660 2.279517 GCATCACGCCTAGTCCGG 60.280 66.667 0.00 0.00 32.94 5.14
2607 2661 1.299468 GAGCATCACGCCTAGTCCG 60.299 63.158 0.00 0.00 44.04 4.79
2608 2662 1.299468 CGAGCATCACGCCTAGTCC 60.299 63.158 0.00 0.00 44.04 3.85
2609 2663 0.100682 TTCGAGCATCACGCCTAGTC 59.899 55.000 0.00 0.00 44.04 2.59
2610 2664 0.747255 ATTCGAGCATCACGCCTAGT 59.253 50.000 0.00 0.00 44.04 2.57
2611 2665 1.413382 GATTCGAGCATCACGCCTAG 58.587 55.000 0.00 0.00 44.04 3.02
2612 2666 0.317854 CGATTCGAGCATCACGCCTA 60.318 55.000 0.00 0.00 44.04 3.93
2613 2667 1.589993 CGATTCGAGCATCACGCCT 60.590 57.895 0.00 0.00 44.04 5.52
2614 2668 1.812214 GACGATTCGAGCATCACGCC 61.812 60.000 13.95 0.00 44.04 5.68
2615 2669 1.555538 GACGATTCGAGCATCACGC 59.444 57.895 13.95 0.00 42.91 5.34
2626 2680 2.538535 GGAACTAGGACGACGACGATTC 60.539 54.545 15.32 1.56 42.66 2.52
2627 2681 1.399791 GGAACTAGGACGACGACGATT 59.600 52.381 15.32 1.45 42.66 3.34
2628 2682 1.012841 GGAACTAGGACGACGACGAT 58.987 55.000 15.32 2.10 42.66 3.73
2629 2683 1.354337 CGGAACTAGGACGACGACGA 61.354 60.000 15.32 0.00 42.66 4.20
2630 2684 1.059994 CGGAACTAGGACGACGACG 59.940 63.158 5.58 5.58 45.75 5.12
2631 2685 1.021390 TCCGGAACTAGGACGACGAC 61.021 60.000 0.00 0.00 31.86 4.34
2632 2686 0.107508 ATCCGGAACTAGGACGACGA 60.108 55.000 9.01 0.00 41.10 4.20
2633 2687 0.737219 AATCCGGAACTAGGACGACG 59.263 55.000 9.01 0.00 41.10 5.12
2634 2688 1.268437 CGAATCCGGAACTAGGACGAC 60.268 57.143 9.01 0.00 41.10 4.34
2635 2689 1.019673 CGAATCCGGAACTAGGACGA 58.980 55.000 9.01 0.00 41.10 4.20
2636 2690 0.594284 GCGAATCCGGAACTAGGACG 60.594 60.000 9.01 7.97 41.10 4.79
2637 2691 0.745468 AGCGAATCCGGAACTAGGAC 59.255 55.000 9.01 0.00 41.10 3.85
2638 2692 2.353357 TAGCGAATCCGGAACTAGGA 57.647 50.000 9.01 0.00 42.69 2.94
2639 2693 3.427773 GCTATAGCGAATCCGGAACTAGG 60.428 52.174 9.01 6.86 36.06 3.02
2640 2694 3.427773 GGCTATAGCGAATCCGGAACTAG 60.428 52.174 18.30 1.18 43.26 2.57
2641 2695 2.490903 GGCTATAGCGAATCCGGAACTA 59.509 50.000 18.30 8.81 43.26 2.24
2642 2696 1.272769 GGCTATAGCGAATCCGGAACT 59.727 52.381 18.30 6.57 43.26 3.01
2643 2697 1.711206 GGCTATAGCGAATCCGGAAC 58.289 55.000 18.30 4.92 43.26 3.62
2644 2698 0.242825 CGGCTATAGCGAATCCGGAA 59.757 55.000 18.30 0.00 43.26 4.30
2645 2699 1.880894 CGGCTATAGCGAATCCGGA 59.119 57.895 18.30 6.61 43.26 5.14
2646 2700 4.478195 CGGCTATAGCGAATCCGG 57.522 61.111 18.30 0.00 43.26 5.14
2647 2701 1.153823 CCCGGCTATAGCGAATCCG 60.154 63.158 18.30 14.71 43.26 4.18
2648 2702 0.389948 CACCCGGCTATAGCGAATCC 60.390 60.000 18.30 3.37 43.26 3.01
2649 2703 0.601558 TCACCCGGCTATAGCGAATC 59.398 55.000 18.30 3.74 43.26 2.52
2650 2704 0.603569 CTCACCCGGCTATAGCGAAT 59.396 55.000 18.30 1.30 43.26 3.34
2651 2705 1.461091 CCTCACCCGGCTATAGCGAA 61.461 60.000 18.30 0.00 43.26 4.70
2652 2706 1.901948 CCTCACCCGGCTATAGCGA 60.902 63.158 18.30 8.64 43.26 4.93
2653 2707 1.867919 CTCCTCACCCGGCTATAGCG 61.868 65.000 18.30 13.06 43.26 4.26
2654 2708 1.536943 CCTCCTCACCCGGCTATAGC 61.537 65.000 16.78 16.78 41.14 2.97
2655 2709 0.112606 TCCTCCTCACCCGGCTATAG 59.887 60.000 0.00 0.00 0.00 1.31
2656 2710 0.112606 CTCCTCCTCACCCGGCTATA 59.887 60.000 0.00 0.00 0.00 1.31
2657 2711 1.152440 CTCCTCCTCACCCGGCTAT 60.152 63.158 0.00 0.00 0.00 2.97
2658 2712 2.279073 CTCCTCCTCACCCGGCTA 59.721 66.667 0.00 0.00 0.00 3.93
2659 2713 4.787280 CCTCCTCCTCACCCGGCT 62.787 72.222 0.00 0.00 0.00 5.52
2660 2714 4.779733 TCCTCCTCCTCACCCGGC 62.780 72.222 0.00 0.00 0.00 6.13
2661 2715 2.760385 GTCCTCCTCCTCACCCGG 60.760 72.222 0.00 0.00 0.00 5.73
2662 2716 3.141488 CGTCCTCCTCCTCACCCG 61.141 72.222 0.00 0.00 0.00 5.28
2663 2717 3.462678 GCGTCCTCCTCCTCACCC 61.463 72.222 0.00 0.00 0.00 4.61
2664 2718 3.827898 CGCGTCCTCCTCCTCACC 61.828 72.222 0.00 0.00 0.00 4.02
2665 2719 3.827898 CCGCGTCCTCCTCCTCAC 61.828 72.222 4.92 0.00 0.00 3.51
2670 2724 4.899239 CATGGCCGCGTCCTCCTC 62.899 72.222 8.05 0.00 0.00 3.71
2673 2727 4.899239 CTCCATGGCCGCGTCCTC 62.899 72.222 8.05 0.00 0.00 3.71
2676 2730 4.899239 CTCCTCCATGGCCGCGTC 62.899 72.222 6.96 0.00 35.26 5.19
2682 2736 4.201122 CTGCCCCTCCTCCATGGC 62.201 72.222 6.96 0.00 44.27 4.40
2683 2737 2.367377 TCTGCCCCTCCTCCATGG 60.367 66.667 4.97 4.97 37.10 3.66
2684 2738 3.117452 GCTCTGCCCCTCCTCCATG 62.117 68.421 0.00 0.00 0.00 3.66
2685 2739 2.771762 GCTCTGCCCCTCCTCCAT 60.772 66.667 0.00 0.00 0.00 3.41
2695 2749 3.077556 TCCTCCTTCGGCTCTGCC 61.078 66.667 0.00 0.00 46.75 4.85
2696 2750 2.498726 CTCCTCCTTCGGCTCTGC 59.501 66.667 0.00 0.00 0.00 4.26
2697 2751 1.380515 TCCTCCTCCTTCGGCTCTG 60.381 63.158 0.00 0.00 0.00 3.35
2698 2752 1.380650 GTCCTCCTCCTTCGGCTCT 60.381 63.158 0.00 0.00 0.00 4.09
2699 2753 2.776913 CGTCCTCCTCCTTCGGCTC 61.777 68.421 0.00 0.00 0.00 4.70
2700 2754 2.756283 CGTCCTCCTCCTTCGGCT 60.756 66.667 0.00 0.00 0.00 5.52
2701 2755 4.516195 GCGTCCTCCTCCTTCGGC 62.516 72.222 0.00 0.00 0.00 5.54
2702 2756 2.646175 TTGCGTCCTCCTCCTTCGG 61.646 63.158 0.00 0.00 0.00 4.30
2703 2757 1.446272 GTTGCGTCCTCCTCCTTCG 60.446 63.158 0.00 0.00 0.00 3.79
2704 2758 1.079057 GGTTGCGTCCTCCTCCTTC 60.079 63.158 0.00 0.00 0.00 3.46
2705 2759 1.201429 ATGGTTGCGTCCTCCTCCTT 61.201 55.000 0.00 0.00 0.00 3.36
2706 2760 1.613630 ATGGTTGCGTCCTCCTCCT 60.614 57.895 0.00 0.00 0.00 3.69
2707 2761 1.450312 CATGGTTGCGTCCTCCTCC 60.450 63.158 0.00 0.00 0.00 4.30
2708 2762 1.450312 CCATGGTTGCGTCCTCCTC 60.450 63.158 2.57 0.00 0.00 3.71
2709 2763 1.903877 CTCCATGGTTGCGTCCTCCT 61.904 60.000 12.58 0.00 0.00 3.69
2710 2764 1.450312 CTCCATGGTTGCGTCCTCC 60.450 63.158 12.58 0.00 0.00 4.30
2711 2765 1.450312 CCTCCATGGTTGCGTCCTC 60.450 63.158 12.58 0.00 0.00 3.71
2712 2766 1.903877 CTCCTCCATGGTTGCGTCCT 61.904 60.000 12.58 0.00 37.07 3.85
2713 2767 1.450312 CTCCTCCATGGTTGCGTCC 60.450 63.158 12.58 0.00 37.07 4.79
2714 2768 1.450312 CCTCCTCCATGGTTGCGTC 60.450 63.158 12.58 0.00 37.07 5.19
2715 2769 1.918293 TCCTCCTCCATGGTTGCGT 60.918 57.895 12.58 0.00 37.07 5.24
2716 2770 1.450312 GTCCTCCTCCATGGTTGCG 60.450 63.158 12.58 0.00 37.07 4.85
2717 2771 1.077429 GGTCCTCCTCCATGGTTGC 60.077 63.158 12.58 0.00 37.07 4.17
2718 2772 1.221840 CGGTCCTCCTCCATGGTTG 59.778 63.158 12.58 6.09 37.07 3.77
2719 2773 1.995626 CCGGTCCTCCTCCATGGTT 60.996 63.158 12.58 0.00 37.07 3.67
2720 2774 2.365635 CCGGTCCTCCTCCATGGT 60.366 66.667 12.58 0.00 37.07 3.55
2721 2775 2.041922 TCCGGTCCTCCTCCATGG 60.042 66.667 4.97 4.97 37.10 3.66
2722 2776 2.801631 GCTCCGGTCCTCCTCCATG 61.802 68.421 0.00 0.00 0.00 3.66
2723 2777 2.444895 GCTCCGGTCCTCCTCCAT 60.445 66.667 0.00 0.00 0.00 3.41
2724 2778 4.779733 GGCTCCGGTCCTCCTCCA 62.780 72.222 0.00 0.00 0.00 3.86
2746 2800 4.671569 CTCCTCTATGGCGGCCGC 62.672 72.222 41.63 41.63 41.06 6.53
2747 2801 4.671569 GCTCCTCTATGGCGGCCG 62.672 72.222 24.05 24.05 35.26 6.13
2748 2802 3.527775 CTGCTCCTCTATGGCGGCC 62.528 68.421 13.32 13.32 34.88 6.13
2749 2803 2.030262 CTGCTCCTCTATGGCGGC 59.970 66.667 0.00 0.00 35.78 6.53
2750 2804 1.814772 CTCCTGCTCCTCTATGGCGG 61.815 65.000 0.00 0.00 35.26 6.13
2751 2805 1.664873 CTCCTGCTCCTCTATGGCG 59.335 63.158 0.00 0.00 35.26 5.69
2752 2806 2.056985 CCTCCTGCTCCTCTATGGC 58.943 63.158 0.00 0.00 35.26 4.40
2753 2807 0.762082 TGCCTCCTGCTCCTCTATGG 60.762 60.000 0.00 0.00 42.00 2.74
2754 2808 0.680618 CTGCCTCCTGCTCCTCTATG 59.319 60.000 0.00 0.00 42.00 2.23
2755 2809 0.560193 TCTGCCTCCTGCTCCTCTAT 59.440 55.000 0.00 0.00 42.00 1.98
2756 2810 0.106268 CTCTGCCTCCTGCTCCTCTA 60.106 60.000 0.00 0.00 42.00 2.43
2757 2811 1.381599 CTCTGCCTCCTGCTCCTCT 60.382 63.158 0.00 0.00 42.00 3.69
2758 2812 1.381056 TCTCTGCCTCCTGCTCCTC 60.381 63.158 0.00 0.00 42.00 3.71
2759 2813 1.685421 GTCTCTGCCTCCTGCTCCT 60.685 63.158 0.00 0.00 42.00 3.69
2760 2814 1.958902 CTGTCTCTGCCTCCTGCTCC 61.959 65.000 0.00 0.00 42.00 4.70
2761 2815 0.969917 TCTGTCTCTGCCTCCTGCTC 60.970 60.000 0.00 0.00 42.00 4.26
2762 2816 0.971959 CTCTGTCTCTGCCTCCTGCT 60.972 60.000 0.00 0.00 42.00 4.24
2763 2817 1.516892 CTCTGTCTCTGCCTCCTGC 59.483 63.158 0.00 0.00 41.77 4.85
2764 2818 0.324183 TCCTCTGTCTCTGCCTCCTG 60.324 60.000 0.00 0.00 0.00 3.86
2765 2819 0.033208 CTCCTCTGTCTCTGCCTCCT 60.033 60.000 0.00 0.00 0.00 3.69
2766 2820 1.042559 CCTCCTCTGTCTCTGCCTCC 61.043 65.000 0.00 0.00 0.00 4.30
2767 2821 0.033601 TCCTCCTCTGTCTCTGCCTC 60.034 60.000 0.00 0.00 0.00 4.70
2768 2822 0.033208 CTCCTCCTCTGTCTCTGCCT 60.033 60.000 0.00 0.00 0.00 4.75
2769 2823 1.042559 CCTCCTCCTCTGTCTCTGCC 61.043 65.000 0.00 0.00 0.00 4.85
2770 2824 1.042559 CCCTCCTCCTCTGTCTCTGC 61.043 65.000 0.00 0.00 0.00 4.26
2771 2825 0.396974 CCCCTCCTCCTCTGTCTCTG 60.397 65.000 0.00 0.00 0.00 3.35
2772 2826 0.553862 TCCCCTCCTCCTCTGTCTCT 60.554 60.000 0.00 0.00 0.00 3.10
2773 2827 0.336737 TTCCCCTCCTCCTCTGTCTC 59.663 60.000 0.00 0.00 0.00 3.36
2774 2828 0.338120 CTTCCCCTCCTCCTCTGTCT 59.662 60.000 0.00 0.00 0.00 3.41
2775 2829 0.689412 CCTTCCCCTCCTCCTCTGTC 60.689 65.000 0.00 0.00 0.00 3.51
2776 2830 1.394151 CCTTCCCCTCCTCCTCTGT 59.606 63.158 0.00 0.00 0.00 3.41
2777 2831 0.980231 CACCTTCCCCTCCTCCTCTG 60.980 65.000 0.00 0.00 0.00 3.35
2778 2832 1.394151 CACCTTCCCCTCCTCCTCT 59.606 63.158 0.00 0.00 0.00 3.69
2779 2833 1.690985 CCACCTTCCCCTCCTCCTC 60.691 68.421 0.00 0.00 0.00 3.71
2780 2834 2.456840 CCACCTTCCCCTCCTCCT 59.543 66.667 0.00 0.00 0.00 3.69
2781 2835 3.412408 GCCACCTTCCCCTCCTCC 61.412 72.222 0.00 0.00 0.00 4.30
2782 2836 3.787001 CGCCACCTTCCCCTCCTC 61.787 72.222 0.00 0.00 0.00 3.71
2788 2842 3.774599 CTATGGCCGCCACCTTCCC 62.775 68.421 16.16 0.00 35.80 3.97
2789 2843 2.203209 CTATGGCCGCCACCTTCC 60.203 66.667 16.16 0.00 35.80 3.46
2790 2844 1.227674 CTCTATGGCCGCCACCTTC 60.228 63.158 16.16 0.00 35.80 3.46
2791 2845 1.271840 TTCTCTATGGCCGCCACCTT 61.272 55.000 16.16 0.91 35.80 3.50
2792 2846 1.689233 TTCTCTATGGCCGCCACCT 60.689 57.895 16.16 1.79 35.80 4.00
2793 2847 1.227674 CTTCTCTATGGCCGCCACC 60.228 63.158 16.16 0.00 35.80 4.61
2794 2848 1.227674 CCTTCTCTATGGCCGCCAC 60.228 63.158 16.16 0.00 35.80 5.01
2795 2849 0.980754 TTCCTTCTCTATGGCCGCCA 60.981 55.000 16.17 16.17 38.19 5.69
2796 2850 0.250081 CTTCCTTCTCTATGGCCGCC 60.250 60.000 1.04 1.04 0.00 6.13
2797 2851 0.753262 TCTTCCTTCTCTATGGCCGC 59.247 55.000 0.00 0.00 0.00 6.53
2798 2852 1.342819 CCTCTTCCTTCTCTATGGCCG 59.657 57.143 0.00 0.00 0.00 6.13
2799 2853 1.071542 GCCTCTTCCTTCTCTATGGCC 59.928 57.143 0.00 0.00 33.66 5.36
2800 2854 1.765314 TGCCTCTTCCTTCTCTATGGC 59.235 52.381 0.00 0.00 39.53 4.40
2801 2855 3.303938 TCTGCCTCTTCCTTCTCTATGG 58.696 50.000 0.00 0.00 0.00 2.74
2802 2856 3.321682 CCTCTGCCTCTTCCTTCTCTATG 59.678 52.174 0.00 0.00 0.00 2.23
2803 2857 3.206412 TCCTCTGCCTCTTCCTTCTCTAT 59.794 47.826 0.00 0.00 0.00 1.98
2804 2858 2.583101 TCCTCTGCCTCTTCCTTCTCTA 59.417 50.000 0.00 0.00 0.00 2.43
2805 2859 1.360852 TCCTCTGCCTCTTCCTTCTCT 59.639 52.381 0.00 0.00 0.00 3.10
2806 2860 1.756538 CTCCTCTGCCTCTTCCTTCTC 59.243 57.143 0.00 0.00 0.00 2.87
2807 2861 1.622173 CCTCCTCTGCCTCTTCCTTCT 60.622 57.143 0.00 0.00 0.00 2.85
2808 2862 0.829990 CCTCCTCTGCCTCTTCCTTC 59.170 60.000 0.00 0.00 0.00 3.46
2809 2863 1.271127 GCCTCCTCTGCCTCTTCCTT 61.271 60.000 0.00 0.00 0.00 3.36
2810 2864 1.688884 GCCTCCTCTGCCTCTTCCT 60.689 63.158 0.00 0.00 0.00 3.36
2811 2865 1.970352 CTGCCTCCTCTGCCTCTTCC 61.970 65.000 0.00 0.00 0.00 3.46
2812 2866 0.975040 TCTGCCTCCTCTGCCTCTTC 60.975 60.000 0.00 0.00 0.00 2.87
2813 2867 0.326427 ATCTGCCTCCTCTGCCTCTT 60.326 55.000 0.00 0.00 0.00 2.85
2814 2868 0.760189 GATCTGCCTCCTCTGCCTCT 60.760 60.000 0.00 0.00 0.00 3.69
2815 2869 0.760189 AGATCTGCCTCCTCTGCCTC 60.760 60.000 0.00 0.00 0.00 4.70
2816 2870 1.049855 CAGATCTGCCTCCTCTGCCT 61.050 60.000 10.38 0.00 30.91 4.75
2817 2871 1.446791 CAGATCTGCCTCCTCTGCC 59.553 63.158 10.38 0.00 30.91 4.85
2818 2872 1.446791 CCAGATCTGCCTCCTCTGC 59.553 63.158 17.76 0.00 36.02 4.26
2819 2873 1.446791 GCCAGATCTGCCTCCTCTG 59.553 63.158 17.76 2.14 36.89 3.35
2820 2874 2.132996 CGCCAGATCTGCCTCCTCT 61.133 63.158 17.76 0.00 0.00 3.69
2821 2875 2.420890 CGCCAGATCTGCCTCCTC 59.579 66.667 17.76 0.98 0.00 3.71
2822 2876 3.859414 GCGCCAGATCTGCCTCCT 61.859 66.667 17.76 0.00 0.00 3.69
2823 2877 3.472943 ATGCGCCAGATCTGCCTCC 62.473 63.158 17.76 5.68 0.00 4.30
2824 2878 2.110627 ATGCGCCAGATCTGCCTC 59.889 61.111 17.76 1.37 0.00 4.70
2825 2879 2.203167 CATGCGCCAGATCTGCCT 60.203 61.111 17.76 0.00 0.00 4.75
2826 2880 3.962421 GCATGCGCCAGATCTGCC 61.962 66.667 17.76 5.24 0.00 4.85
2827 2881 4.309347 CGCATGCGCCAGATCTGC 62.309 66.667 29.09 11.60 33.11 4.26
2828 2882 3.646976 CCGCATGCGCCAGATCTG 61.647 66.667 34.00 16.24 38.24 2.90
2829 2883 4.923942 CCCGCATGCGCCAGATCT 62.924 66.667 34.00 0.00 38.24 2.75
2838 2892 3.204827 ATGTCGAAGCCCGCATGC 61.205 61.111 7.91 7.91 38.37 4.06
2839 2893 2.711311 CATGTCGAAGCCCGCATG 59.289 61.111 14.04 14.04 38.37 4.06
2840 2894 2.514592 CCATGTCGAAGCCCGCAT 60.515 61.111 0.00 0.00 38.37 4.73
2844 2898 4.467084 TCGGCCATGTCGAAGCCC 62.467 66.667 2.24 0.00 44.13 5.19
2845 2899 3.195698 GTCGGCCATGTCGAAGCC 61.196 66.667 2.24 5.08 42.59 4.35
2846 2900 3.554692 CGTCGGCCATGTCGAAGC 61.555 66.667 2.24 0.00 42.59 3.86
2847 2901 2.607668 TAGCGTCGGCCATGTCGAAG 62.608 60.000 2.24 13.95 42.59 3.79
2848 2902 2.011741 ATAGCGTCGGCCATGTCGAA 62.012 55.000 2.24 0.00 42.59 3.71
2849 2903 2.486663 ATAGCGTCGGCCATGTCGA 61.487 57.895 2.24 4.58 41.24 4.20
2850 2904 2.027605 ATAGCGTCGGCCATGTCG 59.972 61.111 2.24 2.27 41.24 4.35
2851 2905 1.956170 CCATAGCGTCGGCCATGTC 60.956 63.158 2.24 0.00 36.67 3.06
2852 2906 2.108976 CCATAGCGTCGGCCATGT 59.891 61.111 2.24 0.00 36.67 3.21
2853 2907 3.349006 GCCATAGCGTCGGCCATG 61.349 66.667 2.24 0.00 42.82 3.66
2863 2917 0.107654 ACCTCAAACTCCGCCATAGC 60.108 55.000 0.00 0.00 0.00 2.97
2864 2918 1.656652 CACCTCAAACTCCGCCATAG 58.343 55.000 0.00 0.00 0.00 2.23
2865 2919 0.251916 CCACCTCAAACTCCGCCATA 59.748 55.000 0.00 0.00 0.00 2.74
2866 2920 1.002134 CCACCTCAAACTCCGCCAT 60.002 57.895 0.00 0.00 0.00 4.40
2867 2921 2.429930 CCACCTCAAACTCCGCCA 59.570 61.111 0.00 0.00 0.00 5.69
2868 2922 3.056328 GCCACCTCAAACTCCGCC 61.056 66.667 0.00 0.00 0.00 6.13
2869 2923 3.056328 GGCCACCTCAAACTCCGC 61.056 66.667 0.00 0.00 0.00 5.54
2870 2924 1.228124 TTGGCCACCTCAAACTCCG 60.228 57.895 3.88 0.00 0.00 4.63
2871 2925 0.178990 ACTTGGCCACCTCAAACTCC 60.179 55.000 3.88 0.00 0.00 3.85
2872 2926 0.954452 CACTTGGCCACCTCAAACTC 59.046 55.000 3.88 0.00 0.00 3.01
2873 2927 0.550914 TCACTTGGCCACCTCAAACT 59.449 50.000 3.88 0.00 0.00 2.66
2874 2928 1.398692 TTCACTTGGCCACCTCAAAC 58.601 50.000 3.88 0.00 0.00 2.93
2875 2929 2.151502 TTTCACTTGGCCACCTCAAA 57.848 45.000 3.88 0.00 0.00 2.69
2876 2930 2.151502 TTTTCACTTGGCCACCTCAA 57.848 45.000 3.88 0.00 0.00 3.02
2877 2931 2.031120 CTTTTTCACTTGGCCACCTCA 58.969 47.619 3.88 0.00 0.00 3.86
2878 2932 1.341209 CCTTTTTCACTTGGCCACCTC 59.659 52.381 3.88 0.00 0.00 3.85
2879 2933 1.413118 CCTTTTTCACTTGGCCACCT 58.587 50.000 3.88 0.00 0.00 4.00
2880 2934 0.249868 GCCTTTTTCACTTGGCCACC 60.250 55.000 3.88 0.00 39.49 4.61
2881 2935 0.597377 CGCCTTTTTCACTTGGCCAC 60.597 55.000 3.88 0.00 42.15 5.01
2882 2936 1.739049 CGCCTTTTTCACTTGGCCA 59.261 52.632 0.00 0.00 42.15 5.36
2883 2937 1.006220 CCGCCTTTTTCACTTGGCC 60.006 57.895 0.00 0.00 42.15 5.36
2884 2938 1.664649 GCCGCCTTTTTCACTTGGC 60.665 57.895 0.00 0.00 41.76 4.52
2885 2939 1.371635 CGCCGCCTTTTTCACTTGG 60.372 57.895 0.00 0.00 0.00 3.61
2886 2940 1.371635 CCGCCGCCTTTTTCACTTG 60.372 57.895 0.00 0.00 0.00 3.16
2887 2941 1.515521 CTCCGCCGCCTTTTTCACTT 61.516 55.000 0.00 0.00 0.00 3.16
2888 2942 1.966451 CTCCGCCGCCTTTTTCACT 60.966 57.895 0.00 0.00 0.00 3.41
2889 2943 2.561373 CTCCGCCGCCTTTTTCAC 59.439 61.111 0.00 0.00 0.00 3.18
2890 2944 2.671619 CCTCCGCCGCCTTTTTCA 60.672 61.111 0.00 0.00 0.00 2.69
2891 2945 2.671963 ACCTCCGCCGCCTTTTTC 60.672 61.111 0.00 0.00 0.00 2.29
2892 2946 2.983592 CACCTCCGCCGCCTTTTT 60.984 61.111 0.00 0.00 0.00 1.94
2900 2954 3.319198 TTGGACTCCACCTCCGCC 61.319 66.667 0.00 0.00 30.78 6.13
2901 2955 2.047179 GTTGGACTCCACCTCCGC 60.047 66.667 0.00 0.00 30.78 5.54
2902 2956 2.663196 GGTTGGACTCCACCTCCG 59.337 66.667 0.00 0.00 30.78 4.63
2903 2957 2.168666 GACGGTTGGACTCCACCTCC 62.169 65.000 0.00 0.51 30.78 4.30
2904 2958 1.292541 GACGGTTGGACTCCACCTC 59.707 63.158 0.00 0.36 30.78 3.85
2905 2959 2.571216 CGACGGTTGGACTCCACCT 61.571 63.158 0.00 0.00 30.78 4.00
2906 2960 2.048503 CGACGGTTGGACTCCACC 60.049 66.667 0.00 2.18 30.78 4.61
2907 2961 0.531311 AAACGACGGTTGGACTCCAC 60.531 55.000 0.00 0.00 36.25 4.02
2908 2962 0.531090 CAAACGACGGTTGGACTCCA 60.531 55.000 17.91 0.00 36.25 3.86
2909 2963 1.838568 GCAAACGACGGTTGGACTCC 61.839 60.000 25.79 6.12 36.25 3.85
2910 2964 0.878961 AGCAAACGACGGTTGGACTC 60.879 55.000 25.79 10.02 36.25 3.36
2911 2965 1.145377 AGCAAACGACGGTTGGACT 59.855 52.632 25.79 13.19 36.25 3.85
2912 2966 1.278637 CAGCAAACGACGGTTGGAC 59.721 57.895 25.79 11.09 36.25 4.02
2913 2967 2.539338 GCAGCAAACGACGGTTGGA 61.539 57.895 25.79 0.00 36.25 3.53
2914 2968 2.051345 GCAGCAAACGACGGTTGG 60.051 61.111 25.79 12.10 36.25 3.77
2915 2969 1.654137 GTGCAGCAAACGACGGTTG 60.654 57.895 21.15 21.15 36.25 3.77
2916 2970 2.713154 GTGCAGCAAACGACGGTT 59.287 55.556 0.00 0.00 38.22 4.44
2917 2971 3.276846 GGTGCAGCAAACGACGGT 61.277 61.111 11.86 0.00 0.00 4.83
2918 2972 3.240606 CTGGTGCAGCAAACGACGG 62.241 63.158 20.60 2.15 0.00 4.79
2919 2973 2.249309 CTGGTGCAGCAAACGACG 59.751 61.111 20.60 2.94 0.00 5.12
2920 2974 1.009675 CACTGGTGCAGCAAACGAC 60.010 57.895 20.60 0.00 34.37 4.34
2921 2975 2.186160 CCACTGGTGCAGCAAACGA 61.186 57.895 20.60 0.00 34.37 3.85
2922 2976 1.723608 TTCCACTGGTGCAGCAAACG 61.724 55.000 20.60 10.99 34.37 3.60
2923 2977 0.459489 TTTCCACTGGTGCAGCAAAC 59.541 50.000 20.60 0.00 34.37 2.93
2924 2978 0.746063 CTTTCCACTGGTGCAGCAAA 59.254 50.000 20.60 8.37 34.37 3.68
2925 2979 1.737355 GCTTTCCACTGGTGCAGCAA 61.737 55.000 20.60 1.40 34.37 3.91
2926 2980 2.195567 GCTTTCCACTGGTGCAGCA 61.196 57.895 19.03 19.03 34.37 4.41
2927 2981 2.647297 GCTTTCCACTGGTGCAGC 59.353 61.111 9.47 9.47 34.37 5.25
2928 2982 1.165907 TTCGCTTTCCACTGGTGCAG 61.166 55.000 0.00 0.00 37.52 4.41
2929 2983 1.153066 TTCGCTTTCCACTGGTGCA 60.153 52.632 0.00 0.00 0.00 4.57
2930 2984 0.884704 TCTTCGCTTTCCACTGGTGC 60.885 55.000 0.00 0.00 0.00 5.01
2931 2985 1.734465 GATCTTCGCTTTCCACTGGTG 59.266 52.381 0.00 0.00 0.00 4.17
2932 2986 1.673033 CGATCTTCGCTTTCCACTGGT 60.673 52.381 0.00 0.00 31.14 4.00
2933 2987 1.002366 CGATCTTCGCTTTCCACTGG 58.998 55.000 0.00 0.00 31.14 4.00
2934 2988 1.656095 GTCGATCTTCGCTTTCCACTG 59.344 52.381 0.00 0.00 40.21 3.66
2935 2989 1.272490 TGTCGATCTTCGCTTTCCACT 59.728 47.619 0.00 0.00 40.21 4.00
2936 2990 1.710013 TGTCGATCTTCGCTTTCCAC 58.290 50.000 0.00 0.00 40.21 4.02
2937 2991 2.337583 CTTGTCGATCTTCGCTTTCCA 58.662 47.619 0.00 0.00 40.21 3.53
2938 2992 1.061276 GCTTGTCGATCTTCGCTTTCC 59.939 52.381 0.00 0.00 40.21 3.13
2939 2993 1.996191 AGCTTGTCGATCTTCGCTTTC 59.004 47.619 0.00 0.00 40.21 2.62
2940 2994 1.996191 GAGCTTGTCGATCTTCGCTTT 59.004 47.619 0.00 0.00 40.21 3.51
2941 2995 1.203523 AGAGCTTGTCGATCTTCGCTT 59.796 47.619 0.00 0.00 40.21 4.68
2942 2996 0.814457 AGAGCTTGTCGATCTTCGCT 59.186 50.000 0.00 0.00 40.21 4.93
2943 2997 1.634702 AAGAGCTTGTCGATCTTCGC 58.365 50.000 0.00 0.00 44.63 4.70
2947 3001 2.822561 TGAGTGAAGAGCTTGTCGATCT 59.177 45.455 0.00 0.00 40.86 2.75
2948 3002 2.920490 GTGAGTGAAGAGCTTGTCGATC 59.080 50.000 0.00 0.00 0.00 3.69
2949 3003 2.297315 TGTGAGTGAAGAGCTTGTCGAT 59.703 45.455 0.00 0.00 0.00 3.59
2950 3004 1.681264 TGTGAGTGAAGAGCTTGTCGA 59.319 47.619 0.00 0.00 0.00 4.20
2951 3005 2.140065 TGTGAGTGAAGAGCTTGTCG 57.860 50.000 0.00 0.00 0.00 4.35
2952 3006 3.657634 TCATGTGAGTGAAGAGCTTGTC 58.342 45.455 0.00 0.00 0.00 3.18
2953 3007 3.758755 TCATGTGAGTGAAGAGCTTGT 57.241 42.857 0.00 0.00 0.00 3.16
2961 3015 2.607038 CGTCGGACTTCATGTGAGTGAA 60.607 50.000 6.57 0.00 36.70 3.18
2962 3016 1.068541 CGTCGGACTTCATGTGAGTGA 60.069 52.381 6.57 0.34 0.00 3.41
2963 3017 1.068541 TCGTCGGACTTCATGTGAGTG 60.069 52.381 6.57 0.00 0.00 3.51
2964 3018 1.200252 CTCGTCGGACTTCATGTGAGT 59.800 52.381 6.57 4.54 0.00 3.41
2965 3019 1.468224 CCTCGTCGGACTTCATGTGAG 60.468 57.143 6.57 3.60 33.16 3.51
2966 3020 0.526211 CCTCGTCGGACTTCATGTGA 59.474 55.000 6.57 0.00 33.16 3.58
2967 3021 0.526211 TCCTCGTCGGACTTCATGTG 59.474 55.000 6.57 0.00 36.69 3.21
2968 3022 0.811915 CTCCTCGTCGGACTTCATGT 59.188 55.000 6.57 0.00 36.69 3.21
2969 3023 0.526524 GCTCCTCGTCGGACTTCATG 60.527 60.000 6.57 0.00 36.69 3.07
2970 3024 1.668101 GGCTCCTCGTCGGACTTCAT 61.668 60.000 6.57 0.00 36.69 2.57
2971 3025 2.341101 GGCTCCTCGTCGGACTTCA 61.341 63.158 6.57 0.00 36.69 3.02
2972 3026 2.490685 GGCTCCTCGTCGGACTTC 59.509 66.667 6.57 0.00 36.69 3.01
2973 3027 3.441290 CGGCTCCTCGTCGGACTT 61.441 66.667 6.57 0.00 36.69 3.01
2979 3033 4.593864 GATGCCCGGCTCCTCGTC 62.594 72.222 11.61 0.00 0.00 4.20
2981 3035 4.899239 GTGATGCCCGGCTCCTCG 62.899 72.222 11.61 0.00 0.00 4.63
2982 3036 3.036429 AAGTGATGCCCGGCTCCTC 62.036 63.158 11.61 5.67 0.00 3.71
2983 3037 3.011517 AAGTGATGCCCGGCTCCT 61.012 61.111 11.61 0.00 0.00 3.69
2984 3038 2.825836 CAAGTGATGCCCGGCTCC 60.826 66.667 11.61 2.78 0.00 4.70
2985 3039 2.825836 CCAAGTGATGCCCGGCTC 60.826 66.667 11.61 6.45 0.00 4.70
2988 3042 1.971505 TAGAGCCAAGTGATGCCCGG 61.972 60.000 0.00 0.00 0.00 5.73
2989 3043 0.531532 CTAGAGCCAAGTGATGCCCG 60.532 60.000 0.00 0.00 0.00 6.13
2990 3044 0.543749 ACTAGAGCCAAGTGATGCCC 59.456 55.000 0.00 0.00 0.00 5.36
2991 3045 2.409948 AACTAGAGCCAAGTGATGCC 57.590 50.000 0.00 0.00 0.00 4.40
2992 3046 3.127721 GGAAAACTAGAGCCAAGTGATGC 59.872 47.826 0.00 0.00 0.00 3.91
2993 3047 4.154918 GTGGAAAACTAGAGCCAAGTGATG 59.845 45.833 0.00 0.00 31.18 3.07
2994 3048 4.042187 AGTGGAAAACTAGAGCCAAGTGAT 59.958 41.667 0.00 0.00 37.36 3.06
2995 3049 3.391296 AGTGGAAAACTAGAGCCAAGTGA 59.609 43.478 0.00 0.00 37.36 3.41
2996 3050 3.744660 AGTGGAAAACTAGAGCCAAGTG 58.255 45.455 0.00 0.00 37.36 3.16
2997 3051 3.244596 GGAGTGGAAAACTAGAGCCAAGT 60.245 47.826 0.00 0.00 40.07 3.16
2998 3052 3.339141 GGAGTGGAAAACTAGAGCCAAG 58.661 50.000 0.00 0.00 40.07 3.61
2999 3053 2.039879 GGGAGTGGAAAACTAGAGCCAA 59.960 50.000 0.00 0.00 40.07 4.52
3000 3054 1.628846 GGGAGTGGAAAACTAGAGCCA 59.371 52.381 0.00 0.00 40.07 4.75
3001 3055 1.909986 AGGGAGTGGAAAACTAGAGCC 59.090 52.381 0.00 0.00 40.07 4.70
3002 3056 2.835156 AGAGGGAGTGGAAAACTAGAGC 59.165 50.000 0.00 0.00 40.07 4.09
3003 3057 5.265989 ACTAGAGGGAGTGGAAAACTAGAG 58.734 45.833 0.00 0.00 40.07 2.43
3004 3058 5.272405 ACTAGAGGGAGTGGAAAACTAGA 57.728 43.478 0.00 0.00 40.07 2.43
3005 3059 6.361768 AAACTAGAGGGAGTGGAAAACTAG 57.638 41.667 0.00 0.00 40.07 2.57
3006 3060 6.758806 AAAACTAGAGGGAGTGGAAAACTA 57.241 37.500 0.00 0.00 40.07 2.24
3007 3061 5.648330 AAAACTAGAGGGAGTGGAAAACT 57.352 39.130 0.00 0.00 43.85 2.66
3008 3062 5.826208 TGAAAAACTAGAGGGAGTGGAAAAC 59.174 40.000 0.00 0.00 0.00 2.43
3009 3063 5.826208 GTGAAAAACTAGAGGGAGTGGAAAA 59.174 40.000 0.00 0.00 0.00 2.29
3010 3064 5.132144 AGTGAAAAACTAGAGGGAGTGGAAA 59.868 40.000 0.00 0.00 37.36 3.13
3011 3065 4.658901 AGTGAAAAACTAGAGGGAGTGGAA 59.341 41.667 0.00 0.00 37.36 3.53
3012 3066 4.232091 AGTGAAAAACTAGAGGGAGTGGA 58.768 43.478 0.00 0.00 37.36 4.02
3013 3067 4.284746 AGAGTGAAAAACTAGAGGGAGTGG 59.715 45.833 0.00 0.00 40.07 4.00
3014 3068 5.474825 GAGAGTGAAAAACTAGAGGGAGTG 58.525 45.833 0.00 0.00 40.07 3.51
3015 3069 4.528987 GGAGAGTGAAAAACTAGAGGGAGT 59.471 45.833 0.00 0.00 40.07 3.85
3016 3070 4.528596 TGGAGAGTGAAAAACTAGAGGGAG 59.471 45.833 0.00 0.00 40.07 4.30
3017 3071 4.489737 TGGAGAGTGAAAAACTAGAGGGA 58.510 43.478 0.00 0.00 40.07 4.20
3018 3072 4.891992 TGGAGAGTGAAAAACTAGAGGG 57.108 45.455 0.00 0.00 40.07 4.30
3019 3073 9.757227 CTAATATGGAGAGTGAAAAACTAGAGG 57.243 37.037 0.00 0.00 40.07 3.69
3044 3098 9.793259 TTCATGAAGTTGACTTAGGATAAAACT 57.207 29.630 3.38 0.00 36.11 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.