Multiple sequence alignment - TraesCS3A01G006400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G006400 chr3A 100.000 3618 0 0 1 3618 7281289 7277672 0.000000e+00 6682.0
1 TraesCS3A01G006400 chr3A 87.500 168 15 5 3036 3200 510596906 510596742 4.770000e-44 189.0
2 TraesCS3A01G006400 chr3B 90.691 2170 136 37 942 3062 4780505 4782657 0.000000e+00 2828.0
3 TraesCS3A01G006400 chr3B 90.645 2170 137 37 942 3062 3893579 3895731 0.000000e+00 2822.0
4 TraesCS3A01G006400 chr3B 90.625 448 28 6 3173 3618 3895731 3896166 1.870000e-162 582.0
5 TraesCS3A01G006400 chr3B 90.625 448 28 6 3173 3618 4782657 4783092 1.870000e-162 582.0
6 TraesCS3A01G006400 chr3B 94.161 137 8 0 3034 3170 333462004 333462140 3.660000e-50 209.0
7 TraesCS3A01G006400 chr3B 91.724 145 10 2 3031 3175 178387560 178387702 2.200000e-47 200.0
8 TraesCS3A01G006400 chr3B 91.667 144 11 1 3032 3175 412857248 412857106 7.920000e-47 198.0
9 TraesCS3A01G006400 chr3B 91.579 95 8 0 699 793 246060270 246060364 8.150000e-27 132.0
10 TraesCS3A01G006400 chr3D 88.741 1954 123 46 944 2824 1743722 1745651 0.000000e+00 2300.0
11 TraesCS3A01G006400 chr3D 91.437 327 24 3 3292 3618 1745652 1745974 2.560000e-121 446.0
12 TraesCS3A01G006400 chr5A 95.385 585 27 0 120 704 619372218 619371634 0.000000e+00 931.0
13 TraesCS3A01G006400 chr5A 87.943 141 5 1 699 827 609811461 609811601 4.840000e-34 156.0
14 TraesCS3A01G006400 chr5A 87.234 141 6 1 699 827 632590649 632590509 2.250000e-32 150.0
15 TraesCS3A01G006400 chr5A 85.401 137 8 1 699 823 619370339 619370203 8.150000e-27 132.0
16 TraesCS3A01G006400 chr7D 82.418 1092 167 20 1719 2799 21008382 21007305 0.000000e+00 929.0
17 TraesCS3A01G006400 chr7D 85.067 596 66 11 1076 1665 21009083 21008505 1.450000e-163 586.0
18 TraesCS3A01G006400 chr7D 93.525 139 9 0 3040 3178 6484467 6484605 1.320000e-49 207.0
19 TraesCS3A01G006400 chr4A 82.218 1091 172 17 1719 2799 669235705 669236783 0.000000e+00 920.0
20 TraesCS3A01G006400 chr4A 83.961 611 70 11 1067 1665 669234991 669235585 8.770000e-156 560.0
21 TraesCS3A01G006400 chr7A 83.387 626 75 10 1052 1665 21359916 21359308 1.470000e-153 553.0
22 TraesCS3A01G006400 chr7B 93.571 140 9 0 3036 3175 551815409 551815270 3.660000e-50 209.0
23 TraesCS3A01G006400 chr2D 93.007 143 9 1 3038 3179 231598982 231599124 1.320000e-49 207.0
24 TraesCS3A01G006400 chr2D 86.232 138 6 2 699 824 322356015 322356151 1.750000e-28 137.0
25 TraesCS3A01G006400 chr6D 91.391 151 10 3 3031 3179 54003313 54003164 1.700000e-48 204.0
26 TraesCS3A01G006400 chr6D 93.617 94 6 0 699 792 331187419 331187512 1.350000e-29 141.0
27 TraesCS3A01G006400 chr6B 92.308 143 10 1 3035 3177 34048052 34047911 6.130000e-48 202.0
28 TraesCS3A01G006400 chr2A 85.401 137 8 1 699 823 375716958 375717094 8.150000e-27 132.0
29 TraesCS3A01G006400 chr2B 90.526 95 9 0 699 793 415321730 415321824 3.790000e-25 126.0
30 TraesCS3A01G006400 chr2B 90.526 95 9 0 699 793 415329597 415329691 3.790000e-25 126.0
31 TraesCS3A01G006400 chr6A 100.000 28 0 0 795 822 79971279 79971306 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G006400 chr3A 7277672 7281289 3617 True 6682.0 6682 100.0000 1 3618 1 chr3A.!!$R1 3617
1 TraesCS3A01G006400 chr3B 4780505 4783092 2587 False 1705.0 2828 90.6580 942 3618 2 chr3B.!!$F5 2676
2 TraesCS3A01G006400 chr3B 3893579 3896166 2587 False 1702.0 2822 90.6350 942 3618 2 chr3B.!!$F4 2676
3 TraesCS3A01G006400 chr3D 1743722 1745974 2252 False 1373.0 2300 90.0890 944 3618 2 chr3D.!!$F1 2674
4 TraesCS3A01G006400 chr5A 619370203 619372218 2015 True 531.5 931 90.3930 120 823 2 chr5A.!!$R2 703
5 TraesCS3A01G006400 chr7D 21007305 21009083 1778 True 757.5 929 83.7425 1076 2799 2 chr7D.!!$R1 1723
6 TraesCS3A01G006400 chr4A 669234991 669236783 1792 False 740.0 920 83.0895 1067 2799 2 chr4A.!!$F1 1732
7 TraesCS3A01G006400 chr7A 21359308 21359916 608 True 553.0 553 83.3870 1052 1665 1 chr7A.!!$R1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 2256 0.179225 CTTGTGAACGGCGCACATAC 60.179 55.0 18.52 7.18 44.81 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2726 4168 0.399075 GAACCGGGGGAGAGTTCAAA 59.601 55.0 6.32 0.0 39.71 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.737850 GATGAATGGTCAGCTAGAAGGG 58.262 50.000 0.00 0.00 37.20 3.95
24 25 1.839994 TGAATGGTCAGCTAGAAGGGG 59.160 52.381 0.00 0.00 0.00 4.79
25 26 1.840635 GAATGGTCAGCTAGAAGGGGT 59.159 52.381 0.00 0.00 0.00 4.95
26 27 2.868964 ATGGTCAGCTAGAAGGGGTA 57.131 50.000 0.00 0.00 0.00 3.69
27 28 2.634639 TGGTCAGCTAGAAGGGGTAA 57.365 50.000 0.00 0.00 0.00 2.85
28 29 2.910544 TGGTCAGCTAGAAGGGGTAAA 58.089 47.619 0.00 0.00 0.00 2.01
29 30 2.838202 TGGTCAGCTAGAAGGGGTAAAG 59.162 50.000 0.00 0.00 0.00 1.85
30 31 3.105283 GGTCAGCTAGAAGGGGTAAAGA 58.895 50.000 0.00 0.00 0.00 2.52
31 32 3.712218 GGTCAGCTAGAAGGGGTAAAGAT 59.288 47.826 0.00 0.00 0.00 2.40
32 33 4.164413 GGTCAGCTAGAAGGGGTAAAGATT 59.836 45.833 0.00 0.00 0.00 2.40
33 34 5.339282 GGTCAGCTAGAAGGGGTAAAGATTT 60.339 44.000 0.00 0.00 0.00 2.17
34 35 6.181190 GTCAGCTAGAAGGGGTAAAGATTTT 58.819 40.000 0.00 0.00 0.00 1.82
35 36 6.659668 GTCAGCTAGAAGGGGTAAAGATTTTT 59.340 38.462 0.00 0.00 0.00 1.94
36 37 6.884836 TCAGCTAGAAGGGGTAAAGATTTTTC 59.115 38.462 0.00 0.00 0.00 2.29
37 38 6.659242 CAGCTAGAAGGGGTAAAGATTTTTCA 59.341 38.462 0.00 0.00 0.00 2.69
38 39 7.176690 CAGCTAGAAGGGGTAAAGATTTTTCAA 59.823 37.037 0.00 0.00 0.00 2.69
39 40 7.728532 AGCTAGAAGGGGTAAAGATTTTTCAAA 59.271 33.333 0.00 0.00 0.00 2.69
40 41 8.364894 GCTAGAAGGGGTAAAGATTTTTCAAAA 58.635 33.333 0.00 0.00 0.00 2.44
43 44 7.661437 AGAAGGGGTAAAGATTTTTCAAAATGC 59.339 33.333 2.17 0.00 38.64 3.56
44 45 5.931724 AGGGGTAAAGATTTTTCAAAATGCG 59.068 36.000 2.17 0.00 38.64 4.73
45 46 5.121611 GGGGTAAAGATTTTTCAAAATGCGG 59.878 40.000 2.17 0.00 38.64 5.69
46 47 5.390461 GGGTAAAGATTTTTCAAAATGCGGC 60.390 40.000 2.17 0.00 38.64 6.53
47 48 4.388189 AAAGATTTTTCAAAATGCGGCG 57.612 36.364 0.51 0.51 38.64 6.46
48 49 3.296322 AGATTTTTCAAAATGCGGCGA 57.704 38.095 12.98 0.00 38.64 5.54
49 50 3.244976 AGATTTTTCAAAATGCGGCGAG 58.755 40.909 12.98 0.00 38.64 5.03
60 61 3.736581 GCGGCGAGCTTTAATCATC 57.263 52.632 12.98 0.00 44.04 2.92
61 62 1.221414 GCGGCGAGCTTTAATCATCT 58.779 50.000 12.98 0.00 44.04 2.90
62 63 2.404215 GCGGCGAGCTTTAATCATCTA 58.596 47.619 12.98 0.00 44.04 1.98
63 64 2.155924 GCGGCGAGCTTTAATCATCTAC 59.844 50.000 12.98 0.00 44.04 2.59
64 65 3.643763 CGGCGAGCTTTAATCATCTACT 58.356 45.455 0.00 0.00 0.00 2.57
65 66 3.426859 CGGCGAGCTTTAATCATCTACTG 59.573 47.826 0.00 0.00 0.00 2.74
66 67 4.372656 GGCGAGCTTTAATCATCTACTGT 58.627 43.478 0.00 0.00 0.00 3.55
67 68 4.811557 GGCGAGCTTTAATCATCTACTGTT 59.188 41.667 0.00 0.00 0.00 3.16
68 69 5.294552 GGCGAGCTTTAATCATCTACTGTTT 59.705 40.000 0.00 0.00 0.00 2.83
69 70 6.188175 GCGAGCTTTAATCATCTACTGTTTG 58.812 40.000 0.00 0.00 0.00 2.93
70 71 6.188175 CGAGCTTTAATCATCTACTGTTTGC 58.812 40.000 0.00 0.00 0.00 3.68
71 72 6.183360 CGAGCTTTAATCATCTACTGTTTGCA 60.183 38.462 0.00 0.00 0.00 4.08
73 74 6.881065 AGCTTTAATCATCTACTGTTTGCAGA 59.119 34.615 1.30 0.00 45.28 4.26
74 75 7.555554 AGCTTTAATCATCTACTGTTTGCAGAT 59.444 33.333 1.30 0.00 45.28 2.90
75 76 7.642978 GCTTTAATCATCTACTGTTTGCAGATG 59.357 37.037 10.62 10.62 44.21 2.90
78 79 5.411831 TCATCTACTGTTTGCAGATGACT 57.588 39.130 14.09 0.00 45.62 3.41
79 80 6.530019 TCATCTACTGTTTGCAGATGACTA 57.470 37.500 14.09 0.00 45.62 2.59
80 81 7.117285 TCATCTACTGTTTGCAGATGACTAT 57.883 36.000 14.09 0.00 45.62 2.12
81 82 7.559486 TCATCTACTGTTTGCAGATGACTATT 58.441 34.615 14.09 0.00 45.62 1.73
82 83 7.493645 TCATCTACTGTTTGCAGATGACTATTG 59.506 37.037 14.09 0.00 45.62 1.90
83 84 6.935167 TCTACTGTTTGCAGATGACTATTGA 58.065 36.000 1.30 0.00 45.28 2.57
84 85 7.559486 TCTACTGTTTGCAGATGACTATTGAT 58.441 34.615 1.30 0.00 45.28 2.57
85 86 8.043113 TCTACTGTTTGCAGATGACTATTGATT 58.957 33.333 1.30 0.00 45.28 2.57
86 87 7.081526 ACTGTTTGCAGATGACTATTGATTC 57.918 36.000 1.30 0.00 45.28 2.52
87 88 6.883217 ACTGTTTGCAGATGACTATTGATTCT 59.117 34.615 1.30 0.00 45.28 2.40
88 89 7.392673 ACTGTTTGCAGATGACTATTGATTCTT 59.607 33.333 1.30 0.00 45.28 2.52
89 90 7.755591 TGTTTGCAGATGACTATTGATTCTTC 58.244 34.615 0.00 0.00 0.00 2.87
90 91 7.609146 TGTTTGCAGATGACTATTGATTCTTCT 59.391 33.333 0.00 0.00 0.00 2.85
91 92 7.549615 TTGCAGATGACTATTGATTCTTCTG 57.450 36.000 9.14 9.14 42.66 3.02
92 93 6.881570 TGCAGATGACTATTGATTCTTCTGA 58.118 36.000 15.09 2.52 42.51 3.27
93 94 7.333323 TGCAGATGACTATTGATTCTTCTGAA 58.667 34.615 15.09 5.26 42.51 3.02
94 95 7.494952 TGCAGATGACTATTGATTCTTCTGAAG 59.505 37.037 11.18 11.18 42.51 3.02
95 96 7.041916 GCAGATGACTATTGATTCTTCTGAAGG 60.042 40.741 16.83 1.57 42.51 3.46
96 97 7.986320 CAGATGACTATTGATTCTTCTGAAGGT 59.014 37.037 16.83 6.74 42.51 3.50
97 98 8.203485 AGATGACTATTGATTCTTCTGAAGGTC 58.797 37.037 16.83 14.78 35.44 3.85
98 99 7.487822 TGACTATTGATTCTTCTGAAGGTCT 57.512 36.000 16.83 2.72 35.44 3.85
99 100 7.551585 TGACTATTGATTCTTCTGAAGGTCTC 58.448 38.462 16.83 11.33 35.44 3.36
100 101 7.179160 TGACTATTGATTCTTCTGAAGGTCTCA 59.821 37.037 16.83 13.42 35.44 3.27
112 113 4.480115 TGAAGGTCTCAGAGGAAAGTACA 58.520 43.478 0.00 0.00 0.00 2.90
113 114 4.281182 TGAAGGTCTCAGAGGAAAGTACAC 59.719 45.833 0.00 0.00 0.00 2.90
114 115 4.120946 AGGTCTCAGAGGAAAGTACACT 57.879 45.455 0.00 0.00 0.00 3.55
115 116 4.484912 AGGTCTCAGAGGAAAGTACACTT 58.515 43.478 0.00 0.00 37.91 3.16
116 117 4.525100 AGGTCTCAGAGGAAAGTACACTTC 59.475 45.833 0.00 0.00 34.61 3.01
117 118 4.281182 GGTCTCAGAGGAAAGTACACTTCA 59.719 45.833 0.00 0.00 34.61 3.02
118 119 5.046950 GGTCTCAGAGGAAAGTACACTTCAT 60.047 44.000 0.00 3.02 34.61 2.57
212 213 4.955925 TTCAGCAAGAACACGAAAGAAA 57.044 36.364 0.00 0.00 0.00 2.52
222 223 6.994221 AGAACACGAAAGAAAGAGATAGGAA 58.006 36.000 0.00 0.00 0.00 3.36
236 237 7.921041 AGAGATAGGAAAGGTATGATGAACA 57.079 36.000 0.00 0.00 0.00 3.18
281 282 6.179756 ACTTGGAATGAAAAATATTTGGGCC 58.820 36.000 0.39 0.00 0.00 5.80
315 316 2.241176 TGGGTCACTCCAAGAACAAAGT 59.759 45.455 0.00 0.00 38.11 2.66
322 323 3.763897 ACTCCAAGAACAAAGTGTTTGCT 59.236 39.130 0.00 0.00 41.28 3.91
337 338 6.412214 AGTGTTTGCTTATATTAAGGACCGT 58.588 36.000 0.00 0.00 0.00 4.83
408 409 6.017523 GCTGGGAAAGAGATACTGATTAAAGC 60.018 42.308 0.00 0.00 0.00 3.51
409 410 6.957631 TGGGAAAGAGATACTGATTAAAGCA 58.042 36.000 0.00 0.00 0.00 3.91
426 427 2.199291 GCATGTGCACAAGCTATTCC 57.801 50.000 33.35 9.26 42.74 3.01
430 431 1.270571 TGTGCACAAGCTATTCCGACA 60.271 47.619 19.28 0.00 42.74 4.35
434 435 2.218759 GCACAAGCTATTCCGACATACG 59.781 50.000 0.00 0.00 38.68 3.06
449 450 4.065423 ACATACGCGATGTCAGTTTTTG 57.935 40.909 15.93 0.00 46.33 2.44
452 453 3.896648 ACGCGATGTCAGTTTTTGATT 57.103 38.095 15.93 0.00 38.29 2.57
481 482 2.092968 GGGGCTATGTGAACAGATGACA 60.093 50.000 0.00 0.00 0.00 3.58
482 483 3.201290 GGGCTATGTGAACAGATGACAG 58.799 50.000 0.00 0.00 0.00 3.51
508 509 2.754946 TTTGTAGGTACTTCTGGGCG 57.245 50.000 0.00 0.00 41.75 6.13
539 540 6.703165 GGACCATGATAAGAAAATTCATTGGC 59.297 38.462 0.00 0.00 0.00 4.52
554 555 1.597742 TTGGCTGTCAGCAGAGAAAC 58.402 50.000 25.68 7.54 44.75 2.78
603 604 6.660949 GGTTTGGGCTATAAAGATCTGCATAT 59.339 38.462 0.00 0.00 0.00 1.78
652 653 2.548127 GATGGCGGCTGCTCCAAAAC 62.548 60.000 18.85 0.00 42.25 2.43
656 657 2.282180 GGCTGCTCCAAAACCCGA 60.282 61.111 0.00 0.00 34.01 5.14
711 2012 6.773685 AGGTACTTTTCAGATACTCTAGCGAT 59.226 38.462 0.00 0.00 27.25 4.58
745 2046 1.604593 GGTGCATGTGTCCCAAGCT 60.605 57.895 0.00 0.00 38.57 3.74
746 2047 1.582968 GTGCATGTGTCCCAAGCTG 59.417 57.895 0.00 0.00 38.57 4.24
754 2055 1.819632 GTCCCAAGCTGTATGGCCG 60.820 63.158 0.00 0.00 36.58 6.13
790 2103 4.192317 ACTTTATCCGAGACTTGATTGCC 58.808 43.478 0.00 0.00 0.00 4.52
904 2217 8.575649 AAGTACAAATGTCCTAAAGTTATGGG 57.424 34.615 0.00 0.00 0.00 4.00
905 2218 5.914898 ACAAATGTCCTAAAGTTATGGGC 57.085 39.130 0.00 0.00 0.00 5.36
906 2219 4.709886 ACAAATGTCCTAAAGTTATGGGCC 59.290 41.667 0.00 0.00 0.00 5.80
907 2220 4.601406 AATGTCCTAAAGTTATGGGCCA 57.399 40.909 9.61 9.61 0.00 5.36
908 2221 4.601406 ATGTCCTAAAGTTATGGGCCAA 57.399 40.909 11.89 0.00 0.00 4.52
909 2222 3.692690 TGTCCTAAAGTTATGGGCCAAC 58.307 45.455 11.89 4.98 0.00 3.77
910 2223 2.681344 GTCCTAAAGTTATGGGCCAACG 59.319 50.000 11.89 0.00 0.00 4.10
911 2224 2.021457 CCTAAAGTTATGGGCCAACGG 58.979 52.381 11.89 0.00 0.00 4.44
921 2234 4.029809 GCCAACGGCCTGTACCCT 62.030 66.667 0.00 0.00 44.06 4.34
922 2235 2.754375 CCAACGGCCTGTACCCTT 59.246 61.111 0.00 0.00 0.00 3.95
923 2236 1.674322 CCAACGGCCTGTACCCTTG 60.674 63.158 0.00 0.00 0.00 3.61
924 2237 2.033602 AACGGCCTGTACCCTTGC 59.966 61.111 0.00 0.00 0.00 4.01
925 2238 2.526046 AACGGCCTGTACCCTTGCT 61.526 57.895 0.00 0.00 0.00 3.91
926 2239 2.064242 AACGGCCTGTACCCTTGCTT 62.064 55.000 0.00 0.00 0.00 3.91
927 2240 2.040544 CGGCCTGTACCCTTGCTTG 61.041 63.158 0.00 0.00 0.00 4.01
928 2241 1.074951 GGCCTGTACCCTTGCTTGT 59.925 57.895 0.00 0.00 0.00 3.16
929 2242 1.244019 GGCCTGTACCCTTGCTTGTG 61.244 60.000 0.00 0.00 0.00 3.33
930 2243 0.250727 GCCTGTACCCTTGCTTGTGA 60.251 55.000 0.00 0.00 0.00 3.58
931 2244 1.817740 GCCTGTACCCTTGCTTGTGAA 60.818 52.381 0.00 0.00 0.00 3.18
932 2245 1.880027 CCTGTACCCTTGCTTGTGAAC 59.120 52.381 0.00 0.00 0.00 3.18
933 2246 1.531149 CTGTACCCTTGCTTGTGAACG 59.469 52.381 0.00 0.00 0.00 3.95
934 2247 0.872388 GTACCCTTGCTTGTGAACGG 59.128 55.000 0.00 0.00 0.00 4.44
935 2248 0.887387 TACCCTTGCTTGTGAACGGC 60.887 55.000 0.00 0.00 0.00 5.68
936 2249 2.252260 CCTTGCTTGTGAACGGCG 59.748 61.111 4.80 4.80 0.00 6.46
937 2250 2.427410 CTTGCTTGTGAACGGCGC 60.427 61.111 6.90 0.00 0.00 6.53
938 2251 3.179869 CTTGCTTGTGAACGGCGCA 62.180 57.895 10.83 0.00 34.64 6.09
939 2252 3.462333 TTGCTTGTGAACGGCGCAC 62.462 57.895 10.83 8.94 36.59 5.34
940 2253 3.947841 GCTTGTGAACGGCGCACA 61.948 61.111 14.86 14.86 43.89 4.57
941 2254 2.945984 CTTGTGAACGGCGCACAT 59.054 55.556 18.52 0.00 44.81 3.21
942 2255 1.906994 GCTTGTGAACGGCGCACATA 61.907 55.000 18.52 9.67 44.81 2.29
943 2256 0.179225 CTTGTGAACGGCGCACATAC 60.179 55.000 18.52 7.18 44.81 2.39
944 2257 0.601576 TTGTGAACGGCGCACATACT 60.602 50.000 18.52 0.00 44.81 2.12
945 2258 0.244178 TGTGAACGGCGCACATACTA 59.756 50.000 14.86 0.00 41.00 1.82
946 2259 0.921347 GTGAACGGCGCACATACTAG 59.079 55.000 10.83 0.00 36.31 2.57
947 2260 0.528924 TGAACGGCGCACATACTAGT 59.471 50.000 10.83 0.00 0.00 2.57
948 2261 1.067425 TGAACGGCGCACATACTAGTT 60.067 47.619 10.83 1.60 0.00 2.24
976 2290 1.831652 CGCAACCCTCCTGAAGTCCT 61.832 60.000 0.00 0.00 0.00 3.85
981 2295 0.338120 CCCTCCTGAAGTCCTCCTCT 59.662 60.000 0.00 0.00 0.00 3.69
1382 2724 2.800581 CTCCGACTCCGACGACGAG 61.801 68.421 9.28 6.99 42.66 4.18
1384 2726 3.862402 CGACTCCGACGACGAGGG 61.862 72.222 9.28 1.79 42.66 4.30
1696 3104 1.005630 GTGAGAACTGCAGCGAGGT 60.006 57.895 15.27 0.00 0.00 3.85
1742 3156 1.227497 GCCGGAAGAGGATGCTGAG 60.227 63.158 5.05 0.00 0.00 3.35
1913 3327 1.685491 CCGTCTGCCTACTACCCTTCT 60.685 57.143 0.00 0.00 0.00 2.85
1937 3351 3.075005 GGGTGGAGCGCTGAGGTA 61.075 66.667 18.48 0.00 0.00 3.08
2119 3533 0.461135 CTTGAGGAGGAGCAGAGAGC 59.539 60.000 0.00 0.00 46.19 4.09
2300 3714 6.778834 TCATTAGGTGTGGATTCGTAGTTA 57.221 37.500 0.00 0.00 0.00 2.24
2351 3770 3.809832 CAGTAGGTGAACAAGTGAAGTGG 59.190 47.826 0.00 0.00 0.00 4.00
2385 3804 6.073222 GGTAATGTTTCATCTGTCGAACACTT 60.073 38.462 0.00 0.00 35.13 3.16
2397 3816 6.039047 TCTGTCGAACACTTAGAAGTAACAGT 59.961 38.462 14.20 1.45 37.08 3.55
2426 3845 3.021695 AGATTGTGATGCAACCTCATGG 58.978 45.455 0.00 0.00 40.28 3.66
2443 3865 6.379988 ACCTCATGGTACTTGTTTTTCTGTTT 59.620 34.615 0.00 0.00 46.43 2.83
2446 3868 5.585820 TGGTACTTGTTTTTCTGTTTCCC 57.414 39.130 0.00 0.00 0.00 3.97
2447 3869 4.096682 TGGTACTTGTTTTTCTGTTTCCCG 59.903 41.667 0.00 0.00 0.00 5.14
2450 3872 2.438800 TGTTTTTCTGTTTCCCGGGA 57.561 45.000 22.63 22.63 0.00 5.14
2451 3873 2.025898 TGTTTTTCTGTTTCCCGGGAC 58.974 47.619 26.87 14.97 0.00 4.46
2464 3886 2.572556 TCCCGGGACTTTGTAATGCTAA 59.427 45.455 22.63 0.00 0.00 3.09
2487 3914 5.468658 AGTTGCTAGTATGGGATTACCTCT 58.531 41.667 0.00 0.00 41.11 3.69
2499 3926 4.706962 GGGATTACCTCTTGTTGCTTCATT 59.293 41.667 0.00 0.00 35.85 2.57
2581 4008 4.966965 CTGAAATTGCAGCAGATCTCTT 57.033 40.909 0.00 0.00 0.00 2.85
2591 4018 8.414629 TTGCAGCAGATCTCTTATATCTCTTA 57.585 34.615 0.00 0.00 31.22 2.10
2624 4059 3.319122 CACCCCCTATATTTCTTTGCTGC 59.681 47.826 0.00 0.00 0.00 5.25
2637 4072 5.102953 TCTTTGCTGCTTCATATGTACCT 57.897 39.130 1.90 0.00 0.00 3.08
2649 4087 8.037758 GCTTCATATGTACCTGCTTGTATCTAT 58.962 37.037 1.90 0.00 0.00 1.98
2680 4119 6.847956 TTTTGGCATTTCAACTGAGAATTG 57.152 33.333 0.00 0.00 33.97 2.32
2691 4130 6.417258 TCAACTGAGAATTGAGGCAATGATA 58.583 36.000 0.00 0.00 34.04 2.15
2693 4132 8.212995 TCAACTGAGAATTGAGGCAATGATATA 58.787 33.333 0.00 0.00 34.04 0.86
2697 4136 9.327628 CTGAGAATTGAGGCAATGATATATAGG 57.672 37.037 0.00 0.00 34.04 2.57
2700 4139 9.848710 AGAATTGAGGCAATGATATATAGGATG 57.151 33.333 0.00 0.00 34.04 3.51
2741 4183 3.007614 TCTTAACTTTGAACTCTCCCCCG 59.992 47.826 0.00 0.00 0.00 5.73
2746 4188 0.473117 TTGAACTCTCCCCCGGTTCT 60.473 55.000 0.00 0.00 39.73 3.01
2756 4198 1.271926 CCCCCGGTTCTCATTTCAACT 60.272 52.381 0.00 0.00 0.00 3.16
2831 4273 6.071616 TGACTGAATTTAACCCTGGTATTTGC 60.072 38.462 0.00 0.00 0.00 3.68
2834 4276 5.046950 TGAATTTAACCCTGGTATTTGCCAC 60.047 40.000 0.00 0.00 34.36 5.01
2857 4302 1.663702 CGGACACGTCACCCAGTTC 60.664 63.158 0.00 0.00 34.81 3.01
2870 4315 1.078426 CAGTTCGGGGCCTACTTGG 60.078 63.158 0.84 0.00 39.35 3.61
2907 4352 2.224475 CCCAAACATTGCCACAAATCCA 60.224 45.455 0.00 0.00 0.00 3.41
2912 4357 2.699846 ACATTGCCACAAATCCAGTTGT 59.300 40.909 0.00 0.00 42.48 3.32
2950 4395 3.769844 GAGTGAGTATGGGACCAAAGAGA 59.230 47.826 0.00 0.00 0.00 3.10
2965 4410 8.831550 GGACCAAAGAGATATTTATGTGAGTTC 58.168 37.037 0.00 0.00 0.00 3.01
3033 4479 1.192146 GCCCGAGGCCCTGACATATA 61.192 60.000 0.00 0.00 44.06 0.86
3048 4494 9.357161 CCCTGACATATATAGTCTAATACTCCC 57.643 40.741 13.13 0.00 39.80 4.30
3058 4504 2.245546 TCTAATACTCCCTCCGTCCCAA 59.754 50.000 0.00 0.00 0.00 4.12
3061 4507 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3062 4508 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3063 4509 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3064 4510 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3065 4511 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3066 4512 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3067 4513 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3068 4514 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3069 4515 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3070 4516 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3071 4517 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3072 4518 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3073 4519 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3074 4520 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3075 4521 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3076 4522 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3077 4523 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3078 4524 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3079 4525 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3080 4526 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3157 4603 9.898152 AACAAATTTAAGACAAGAATTTTGGGA 57.102 25.926 0.00 0.00 33.39 4.37
3158 4604 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
3159 4605 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
3160 4606 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
3161 4607 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3162 4608 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3163 4609 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3164 4610 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3165 4611 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3166 4612 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3167 4613 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3168 4614 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3169 4615 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3170 4616 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
3171 4617 0.042131 TTGGGACGGAGGGAGTACAT 59.958 55.000 0.00 0.00 0.00 2.29
3179 4625 5.148651 ACGGAGGGAGTACATTATTATGC 57.851 43.478 0.00 0.00 35.03 3.14
3188 4634 7.363530 GGGAGTACATTATTATGCGGTAGATGA 60.364 40.741 0.00 0.00 35.03 2.92
3238 4684 6.335471 TCGTCTAGGTGTTCAATACTTCAA 57.665 37.500 0.00 0.00 0.00 2.69
3242 4689 6.369065 GTCTAGGTGTTCAATACTTCAACTGG 59.631 42.308 0.00 0.00 0.00 4.00
3256 4703 0.178990 AACTGGTCCAAGGGAAGTGC 60.179 55.000 0.00 0.00 31.38 4.40
3259 4706 1.303643 GGTCCAAGGGAAGTGCCTG 60.304 63.158 0.00 0.00 36.66 4.85
3276 4723 3.265221 TGCCTGATTCTTGGAAGATCTGT 59.735 43.478 0.00 0.00 34.49 3.41
3300 4747 6.206829 GTCCCTAGCAAAGACAATGTTTTACT 59.793 38.462 0.00 0.00 0.00 2.24
3301 4748 6.430000 TCCCTAGCAAAGACAATGTTTTACTC 59.570 38.462 0.00 0.00 0.00 2.59
3305 4752 7.992180 AGCAAAGACAATGTTTTACTCTTTG 57.008 32.000 14.67 14.67 45.58 2.77
3306 4753 7.547227 AGCAAAGACAATGTTTTACTCTTTGT 58.453 30.769 18.00 7.81 45.02 2.83
3307 4754 8.682710 AGCAAAGACAATGTTTTACTCTTTGTA 58.317 29.630 18.00 0.00 45.02 2.41
3308 4755 8.743099 GCAAAGACAATGTTTTACTCTTTGTAC 58.257 33.333 18.00 5.46 45.02 2.90
3311 4758 8.732746 AGACAATGTTTTACTCTTTGTACTGT 57.267 30.769 0.00 0.00 34.78 3.55
3401 4857 5.163353 TGGCTGTATACTTGCTTGTGCTATA 60.163 40.000 16.68 0.00 40.48 1.31
3509 4965 4.516698 ACCAAACTAACAAGTCATGAGCTG 59.483 41.667 0.00 0.00 0.00 4.24
3512 4968 3.594134 ACTAACAAGTCATGAGCTGCTC 58.406 45.455 22.38 22.38 0.00 4.26
3590 5046 2.277084 ACGTTAAGCCCGAATAAGCTG 58.723 47.619 0.00 0.00 39.87 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.502950 CCCTTCTAGCTGACCATTCATCTC 60.503 50.000 0.00 0.00 30.70 2.75
2 3 3.495806 CCCCTTCTAGCTGACCATTCATC 60.496 52.174 0.00 0.00 0.00 2.92
4 5 1.839994 CCCCTTCTAGCTGACCATTCA 59.160 52.381 0.00 0.00 0.00 2.57
6 7 1.972588 ACCCCTTCTAGCTGACCATT 58.027 50.000 0.00 0.00 0.00 3.16
7 8 2.868964 TACCCCTTCTAGCTGACCAT 57.131 50.000 0.00 0.00 0.00 3.55
8 9 2.634639 TTACCCCTTCTAGCTGACCA 57.365 50.000 0.00 0.00 0.00 4.02
9 10 3.105283 TCTTTACCCCTTCTAGCTGACC 58.895 50.000 0.00 0.00 0.00 4.02
10 11 5.360649 AATCTTTACCCCTTCTAGCTGAC 57.639 43.478 0.00 0.00 0.00 3.51
11 12 6.388619 AAAATCTTTACCCCTTCTAGCTGA 57.611 37.500 0.00 0.00 0.00 4.26
12 13 6.659242 TGAAAAATCTTTACCCCTTCTAGCTG 59.341 38.462 0.00 0.00 0.00 4.24
13 14 6.790319 TGAAAAATCTTTACCCCTTCTAGCT 58.210 36.000 0.00 0.00 0.00 3.32
14 15 7.462571 TTGAAAAATCTTTACCCCTTCTAGC 57.537 36.000 0.00 0.00 0.00 3.42
17 18 7.661437 GCATTTTGAAAAATCTTTACCCCTTCT 59.339 33.333 0.00 0.00 36.52 2.85
18 19 7.360017 CGCATTTTGAAAAATCTTTACCCCTTC 60.360 37.037 0.00 0.00 36.52 3.46
19 20 6.426633 CGCATTTTGAAAAATCTTTACCCCTT 59.573 34.615 0.00 0.00 36.52 3.95
20 21 5.931724 CGCATTTTGAAAAATCTTTACCCCT 59.068 36.000 0.00 0.00 36.52 4.79
21 22 5.121611 CCGCATTTTGAAAAATCTTTACCCC 59.878 40.000 0.00 0.00 36.52 4.95
22 23 5.390461 GCCGCATTTTGAAAAATCTTTACCC 60.390 40.000 0.00 0.00 36.52 3.69
23 24 5.617609 GCCGCATTTTGAAAAATCTTTACC 58.382 37.500 0.00 0.00 36.52 2.85
24 25 5.117897 TCGCCGCATTTTGAAAAATCTTTAC 59.882 36.000 0.00 0.00 36.52 2.01
25 26 5.223382 TCGCCGCATTTTGAAAAATCTTTA 58.777 33.333 0.00 0.00 36.52 1.85
26 27 4.054671 TCGCCGCATTTTGAAAAATCTTT 58.945 34.783 0.00 0.00 36.52 2.52
27 28 3.648009 TCGCCGCATTTTGAAAAATCTT 58.352 36.364 0.00 0.00 36.52 2.40
28 29 3.244976 CTCGCCGCATTTTGAAAAATCT 58.755 40.909 0.00 0.00 36.52 2.40
29 30 2.222574 GCTCGCCGCATTTTGAAAAATC 60.223 45.455 0.00 0.00 36.52 2.17
30 31 1.726248 GCTCGCCGCATTTTGAAAAAT 59.274 42.857 0.00 0.00 39.07 1.82
31 32 1.135867 GCTCGCCGCATTTTGAAAAA 58.864 45.000 0.00 0.00 38.92 1.94
32 33 0.313672 AGCTCGCCGCATTTTGAAAA 59.686 45.000 0.00 0.00 42.61 2.29
33 34 0.313672 AAGCTCGCCGCATTTTGAAA 59.686 45.000 0.00 0.00 42.61 2.69
34 35 0.313672 AAAGCTCGCCGCATTTTGAA 59.686 45.000 0.00 0.00 42.61 2.69
35 36 1.160989 TAAAGCTCGCCGCATTTTGA 58.839 45.000 0.00 0.00 42.61 2.69
36 37 1.975837 TTAAAGCTCGCCGCATTTTG 58.024 45.000 0.00 0.00 42.61 2.44
37 38 2.163412 TGATTAAAGCTCGCCGCATTTT 59.837 40.909 0.00 0.00 42.61 1.82
38 39 1.742831 TGATTAAAGCTCGCCGCATTT 59.257 42.857 0.00 1.04 42.61 2.32
39 40 1.378531 TGATTAAAGCTCGCCGCATT 58.621 45.000 0.00 0.00 42.61 3.56
40 41 1.532868 GATGATTAAAGCTCGCCGCAT 59.467 47.619 0.00 0.00 42.61 4.73
41 42 0.937304 GATGATTAAAGCTCGCCGCA 59.063 50.000 0.00 0.00 42.61 5.69
42 43 1.221414 AGATGATTAAAGCTCGCCGC 58.779 50.000 0.00 0.00 39.57 6.53
43 44 3.426859 CAGTAGATGATTAAAGCTCGCCG 59.573 47.826 0.00 0.00 0.00 6.46
44 45 4.372656 ACAGTAGATGATTAAAGCTCGCC 58.627 43.478 0.00 0.00 0.00 5.54
45 46 5.975410 AACAGTAGATGATTAAAGCTCGC 57.025 39.130 0.00 0.00 0.00 5.03
46 47 6.183360 TGCAAACAGTAGATGATTAAAGCTCG 60.183 38.462 0.00 0.00 0.00 5.03
47 48 7.065085 TCTGCAAACAGTAGATGATTAAAGCTC 59.935 37.037 0.00 0.00 44.77 4.09
48 49 6.881065 TCTGCAAACAGTAGATGATTAAAGCT 59.119 34.615 0.00 0.00 44.77 3.74
49 50 7.076842 TCTGCAAACAGTAGATGATTAAAGC 57.923 36.000 0.00 0.00 44.77 3.51
59 60 6.935167 TCAATAGTCATCTGCAAACAGTAGA 58.065 36.000 0.00 0.00 44.77 2.59
60 61 7.783090 ATCAATAGTCATCTGCAAACAGTAG 57.217 36.000 0.00 0.00 44.77 2.57
61 62 8.043113 AGAATCAATAGTCATCTGCAAACAGTA 58.957 33.333 0.00 0.00 44.77 2.74
62 63 6.883217 AGAATCAATAGTCATCTGCAAACAGT 59.117 34.615 0.00 0.00 44.77 3.55
63 64 7.317842 AGAATCAATAGTCATCTGCAAACAG 57.682 36.000 0.00 0.00 45.95 3.16
64 65 7.609146 AGAAGAATCAATAGTCATCTGCAAACA 59.391 33.333 0.00 0.00 27.60 2.83
65 66 7.909121 CAGAAGAATCAATAGTCATCTGCAAAC 59.091 37.037 0.00 0.00 38.30 2.93
66 67 7.825761 TCAGAAGAATCAATAGTCATCTGCAAA 59.174 33.333 3.89 0.00 42.34 3.68
67 68 7.333323 TCAGAAGAATCAATAGTCATCTGCAA 58.667 34.615 3.89 0.00 42.34 4.08
68 69 6.881570 TCAGAAGAATCAATAGTCATCTGCA 58.118 36.000 3.89 0.00 42.34 4.41
69 70 7.041916 CCTTCAGAAGAATCAATAGTCATCTGC 60.042 40.741 12.14 0.00 42.34 4.26
70 71 7.986320 ACCTTCAGAAGAATCAATAGTCATCTG 59.014 37.037 12.14 2.65 43.36 2.90
71 72 8.088463 ACCTTCAGAAGAATCAATAGTCATCT 57.912 34.615 12.14 0.00 28.51 2.90
72 73 8.203485 AGACCTTCAGAAGAATCAATAGTCATC 58.797 37.037 12.14 0.00 32.31 2.92
73 74 8.088463 AGACCTTCAGAAGAATCAATAGTCAT 57.912 34.615 12.14 0.00 32.31 3.06
74 75 7.179160 TGAGACCTTCAGAAGAATCAATAGTCA 59.821 37.037 12.14 5.70 32.31 3.41
75 76 7.551585 TGAGACCTTCAGAAGAATCAATAGTC 58.448 38.462 12.14 7.63 32.31 2.59
76 77 7.487822 TGAGACCTTCAGAAGAATCAATAGT 57.512 36.000 12.14 0.00 32.31 2.12
89 90 9.090416 AAGTGTACTTTCCTCTGAGACCTTCAG 62.090 44.444 6.17 0.00 43.06 3.02
90 91 4.281182 GTGTACTTTCCTCTGAGACCTTCA 59.719 45.833 6.17 0.00 0.00 3.02
91 92 4.525100 AGTGTACTTTCCTCTGAGACCTTC 59.475 45.833 6.17 0.00 0.00 3.46
92 93 4.484912 AGTGTACTTTCCTCTGAGACCTT 58.515 43.478 6.17 0.00 0.00 3.50
93 94 4.120946 AGTGTACTTTCCTCTGAGACCT 57.879 45.455 6.17 0.00 0.00 3.85
94 95 4.281182 TGAAGTGTACTTTCCTCTGAGACC 59.719 45.833 6.17 0.00 36.11 3.85
95 96 5.455056 TGAAGTGTACTTTCCTCTGAGAC 57.545 43.478 6.17 0.00 36.11 3.36
96 97 6.672266 AATGAAGTGTACTTTCCTCTGAGA 57.328 37.500 6.17 0.00 36.11 3.27
97 98 6.348050 GCAAATGAAGTGTACTTTCCTCTGAG 60.348 42.308 0.00 0.00 36.11 3.35
98 99 5.470098 GCAAATGAAGTGTACTTTCCTCTGA 59.530 40.000 0.00 0.00 36.11 3.27
99 100 5.239306 TGCAAATGAAGTGTACTTTCCTCTG 59.761 40.000 0.00 0.00 36.11 3.35
100 101 5.376625 TGCAAATGAAGTGTACTTTCCTCT 58.623 37.500 0.00 0.00 36.11 3.69
101 102 5.689383 TGCAAATGAAGTGTACTTTCCTC 57.311 39.130 0.00 0.00 36.11 3.71
102 103 5.359576 TGTTGCAAATGAAGTGTACTTTCCT 59.640 36.000 0.00 0.00 36.11 3.36
103 104 5.587289 TGTTGCAAATGAAGTGTACTTTCC 58.413 37.500 0.00 0.00 36.11 3.13
104 105 8.970691 ATATGTTGCAAATGAAGTGTACTTTC 57.029 30.769 0.00 0.00 36.11 2.62
105 106 9.410556 GAATATGTTGCAAATGAAGTGTACTTT 57.589 29.630 0.00 0.00 36.11 2.66
106 107 8.796475 AGAATATGTTGCAAATGAAGTGTACTT 58.204 29.630 0.00 0.00 39.23 2.24
107 108 8.340618 AGAATATGTTGCAAATGAAGTGTACT 57.659 30.769 0.00 0.00 0.00 2.73
154 155 1.134220 TCCGTATTGATTGTCTGCCCC 60.134 52.381 0.00 0.00 0.00 5.80
212 213 7.921041 TGTTCATCATACCTTTCCTATCTCT 57.079 36.000 0.00 0.00 0.00 3.10
222 223 4.280819 CCCCATGTTGTTCATCATACCTT 58.719 43.478 0.00 0.00 34.09 3.50
236 237 0.471591 TCCTTTTGCAGCCCCATGTT 60.472 50.000 0.00 0.00 0.00 2.71
281 282 2.518349 ACCCACAAACACCGGCAG 60.518 61.111 0.00 0.00 0.00 4.85
315 316 6.092944 CACACGGTCCTTAATATAAGCAAACA 59.907 38.462 0.00 0.00 0.00 2.83
322 323 5.936187 TCCACACACGGTCCTTAATATAA 57.064 39.130 0.00 0.00 0.00 0.98
337 338 1.418264 TCTTGGATCCGTTTCCACACA 59.582 47.619 7.39 0.00 45.42 3.72
357 358 4.773674 TGCTCAACATTTTCTCCATCCATT 59.226 37.500 0.00 0.00 0.00 3.16
408 409 2.009051 TCGGAATAGCTTGTGCACATG 58.991 47.619 22.39 23.55 42.74 3.21
409 410 2.009774 GTCGGAATAGCTTGTGCACAT 58.990 47.619 22.39 8.69 42.74 3.21
430 431 5.545658 AATCAAAAACTGACATCGCGTAT 57.454 34.783 5.77 0.00 36.69 3.06
434 435 8.722342 TTAGTAAAATCAAAAACTGACATCGC 57.278 30.769 0.00 0.00 36.69 4.58
449 450 6.826741 TGTTCACATAGCCCCTTAGTAAAATC 59.173 38.462 0.00 0.00 0.00 2.17
452 453 5.486063 TCTGTTCACATAGCCCCTTAGTAAA 59.514 40.000 0.00 0.00 0.00 2.01
481 482 5.431765 CAGAAGTACCTACAAATCATGGCT 58.568 41.667 0.00 0.00 0.00 4.75
482 483 4.576463 CCAGAAGTACCTACAAATCATGGC 59.424 45.833 0.00 0.00 0.00 4.40
508 509 2.627515 TCTTATCATGGTCCTGCTGC 57.372 50.000 0.00 0.00 0.00 5.25
539 540 6.146347 GGTAAAGTAAGTTTCTCTGCTGACAG 59.854 42.308 0.00 0.00 45.95 3.51
554 555 6.535508 CCTCCATCTTTCTTCGGTAAAGTAAG 59.464 42.308 0.00 0.00 41.35 2.34
603 604 7.574592 GCTTTGCCAACATTGCCATATTAAAAA 60.575 33.333 0.00 0.00 0.00 1.94
656 657 0.321298 ACTCGCCCGCACAAACTATT 60.321 50.000 0.00 0.00 0.00 1.73
695 696 4.904462 CCGTGCATCGCTAGAGTATCTGA 61.904 52.174 0.00 0.00 41.87 3.27
704 705 2.607668 TTCGACCCGTGCATCGCTAG 62.608 60.000 2.57 0.00 38.24 3.42
705 706 2.607668 CTTCGACCCGTGCATCGCTA 62.608 60.000 2.57 0.00 38.24 4.26
706 707 3.989698 CTTCGACCCGTGCATCGCT 62.990 63.158 2.57 0.00 38.24 4.93
711 2012 2.264480 CCATCTTCGACCCGTGCA 59.736 61.111 0.00 0.00 0.00 4.57
754 2055 0.107848 TAAAGTTAGGAGCAGCGCCC 60.108 55.000 12.26 5.10 0.00 6.13
768 2069 4.192317 GGCAATCAAGTCTCGGATAAAGT 58.808 43.478 0.00 0.00 0.00 2.66
769 2070 3.246226 CGGCAATCAAGTCTCGGATAAAG 59.754 47.826 0.00 0.00 0.00 1.85
790 2103 1.529226 TCAATTAACCACTGTGCCCG 58.471 50.000 1.29 0.00 0.00 6.13
835 2148 9.850198 ATGAAATTTCATTTCTTCCCTCAAAAA 57.150 25.926 24.83 0.00 45.13 1.94
838 2151 9.312904 ACTATGAAATTTCATTTCTTCCCTCAA 57.687 29.630 32.57 13.50 45.13 3.02
839 2152 8.884124 ACTATGAAATTTCATTTCTTCCCTCA 57.116 30.769 32.57 13.94 45.13 3.86
840 2153 9.578439 CAACTATGAAATTTCATTTCTTCCCTC 57.422 33.333 32.57 0.00 45.13 4.30
841 2154 9.312904 TCAACTATGAAATTTCATTTCTTCCCT 57.687 29.630 32.57 13.33 45.13 4.20
842 2155 9.927668 TTCAACTATGAAATTTCATTTCTTCCC 57.072 29.630 32.57 0.00 45.13 3.97
878 2191 9.020731 CCCATAACTTTAGGACATTTGTACTTT 57.979 33.333 0.00 0.00 40.35 2.66
879 2192 7.122204 GCCCATAACTTTAGGACATTTGTACTT 59.878 37.037 0.00 0.00 40.35 2.24
880 2193 6.602009 GCCCATAACTTTAGGACATTTGTACT 59.398 38.462 0.33 0.33 42.92 2.73
881 2194 6.183360 GGCCCATAACTTTAGGACATTTGTAC 60.183 42.308 0.00 0.00 0.00 2.90
882 2195 5.889289 GGCCCATAACTTTAGGACATTTGTA 59.111 40.000 0.00 0.00 0.00 2.41
883 2196 4.709886 GGCCCATAACTTTAGGACATTTGT 59.290 41.667 0.00 0.00 0.00 2.83
884 2197 4.709397 TGGCCCATAACTTTAGGACATTTG 59.291 41.667 0.00 0.00 30.43 2.32
885 2198 4.941713 TGGCCCATAACTTTAGGACATTT 58.058 39.130 0.00 0.00 30.43 2.32
886 2199 4.601406 TGGCCCATAACTTTAGGACATT 57.399 40.909 0.00 0.00 30.43 2.71
887 2200 4.278310 GTTGGCCCATAACTTTAGGACAT 58.722 43.478 0.00 0.00 37.23 3.06
888 2201 3.692690 GTTGGCCCATAACTTTAGGACA 58.307 45.455 0.00 0.00 34.89 4.02
889 2202 2.681344 CGTTGGCCCATAACTTTAGGAC 59.319 50.000 0.00 0.00 0.00 3.85
890 2203 2.356330 CCGTTGGCCCATAACTTTAGGA 60.356 50.000 0.00 0.00 0.00 2.94
891 2204 2.021457 CCGTTGGCCCATAACTTTAGG 58.979 52.381 0.00 0.00 0.00 2.69
892 2205 1.404035 GCCGTTGGCCCATAACTTTAG 59.596 52.381 0.00 0.00 44.06 1.85
893 2206 1.465794 GCCGTTGGCCCATAACTTTA 58.534 50.000 0.00 0.00 44.06 1.85
894 2207 2.272923 GCCGTTGGCCCATAACTTT 58.727 52.632 0.00 0.00 44.06 2.66
895 2208 4.012138 GCCGTTGGCCCATAACTT 57.988 55.556 0.00 0.00 44.06 2.66
905 2218 1.674322 CAAGGGTACAGGCCGTTGG 60.674 63.158 5.57 0.00 45.45 3.77
906 2219 3.981308 CAAGGGTACAGGCCGTTG 58.019 61.111 5.57 0.00 44.46 4.10
907 2220 2.033602 GCAAGGGTACAGGCCGTT 59.966 61.111 5.57 0.00 37.12 4.44
908 2221 2.526046 AAGCAAGGGTACAGGCCGT 61.526 57.895 0.00 0.49 0.00 5.68
909 2222 2.040544 CAAGCAAGGGTACAGGCCG 61.041 63.158 0.00 0.00 0.00 6.13
910 2223 1.074951 ACAAGCAAGGGTACAGGCC 59.925 57.895 0.00 0.00 0.00 5.19
911 2224 0.250727 TCACAAGCAAGGGTACAGGC 60.251 55.000 0.00 0.00 0.00 4.85
912 2225 1.880027 GTTCACAAGCAAGGGTACAGG 59.120 52.381 0.00 0.00 0.00 4.00
913 2226 1.531149 CGTTCACAAGCAAGGGTACAG 59.469 52.381 0.00 0.00 0.00 2.74
914 2227 1.588674 CGTTCACAAGCAAGGGTACA 58.411 50.000 0.00 0.00 0.00 2.90
915 2228 0.872388 CCGTTCACAAGCAAGGGTAC 59.128 55.000 0.00 0.00 0.00 3.34
916 2229 0.887387 GCCGTTCACAAGCAAGGGTA 60.887 55.000 0.00 0.00 32.35 3.69
917 2230 2.193536 GCCGTTCACAAGCAAGGGT 61.194 57.895 0.00 0.00 32.35 4.34
918 2231 2.644992 GCCGTTCACAAGCAAGGG 59.355 61.111 0.00 0.00 32.81 3.95
919 2232 2.252260 CGCCGTTCACAAGCAAGG 59.748 61.111 0.00 0.00 0.00 3.61
920 2233 2.427410 GCGCCGTTCACAAGCAAG 60.427 61.111 0.00 0.00 0.00 4.01
921 2234 3.205536 TGCGCCGTTCACAAGCAA 61.206 55.556 4.18 0.00 34.66 3.91
922 2235 3.947841 GTGCGCCGTTCACAAGCA 61.948 61.111 4.18 0.00 34.73 3.91
923 2236 1.906994 TATGTGCGCCGTTCACAAGC 61.907 55.000 4.18 0.00 46.07 4.01
924 2237 0.179225 GTATGTGCGCCGTTCACAAG 60.179 55.000 4.18 0.00 46.07 3.16
925 2238 0.601576 AGTATGTGCGCCGTTCACAA 60.602 50.000 4.18 0.00 46.07 3.33
926 2239 0.244178 TAGTATGTGCGCCGTTCACA 59.756 50.000 4.18 1.52 46.86 3.58
927 2240 0.921347 CTAGTATGTGCGCCGTTCAC 59.079 55.000 4.18 0.00 35.14 3.18
928 2241 0.528924 ACTAGTATGTGCGCCGTTCA 59.471 50.000 4.18 0.00 0.00 3.18
929 2242 1.636988 AACTAGTATGTGCGCCGTTC 58.363 50.000 4.18 0.00 0.00 3.95
930 2243 2.480759 CCTAACTAGTATGTGCGCCGTT 60.481 50.000 4.18 0.00 0.00 4.44
931 2244 1.066605 CCTAACTAGTATGTGCGCCGT 59.933 52.381 4.18 0.00 0.00 5.68
932 2245 1.767289 CCTAACTAGTATGTGCGCCG 58.233 55.000 4.18 0.00 0.00 6.46
933 2246 1.499049 GCCTAACTAGTATGTGCGCC 58.501 55.000 4.18 0.00 0.00 6.53
934 2247 1.499049 GGCCTAACTAGTATGTGCGC 58.501 55.000 0.00 0.00 0.00 6.09
935 2248 1.411246 TGGGCCTAACTAGTATGTGCG 59.589 52.381 4.53 0.00 0.00 5.34
936 2249 3.203716 GTTGGGCCTAACTAGTATGTGC 58.796 50.000 23.67 0.00 0.00 4.57
937 2250 3.454375 CGTTGGGCCTAACTAGTATGTG 58.546 50.000 27.08 7.54 0.00 3.21
938 2251 2.159000 GCGTTGGGCCTAACTAGTATGT 60.159 50.000 27.08 0.00 34.80 2.29
939 2252 2.159014 TGCGTTGGGCCTAACTAGTATG 60.159 50.000 27.08 13.14 42.61 2.39
940 2253 2.112998 TGCGTTGGGCCTAACTAGTAT 58.887 47.619 27.08 0.00 42.61 2.12
941 2254 1.559368 TGCGTTGGGCCTAACTAGTA 58.441 50.000 27.08 11.40 42.61 1.82
942 2255 0.688487 TTGCGTTGGGCCTAACTAGT 59.312 50.000 27.08 0.00 42.61 2.57
943 2256 1.084289 GTTGCGTTGGGCCTAACTAG 58.916 55.000 27.08 15.17 42.61 2.57
944 2257 0.321830 GGTTGCGTTGGGCCTAACTA 60.322 55.000 27.08 14.76 42.61 2.24
945 2258 1.602605 GGTTGCGTTGGGCCTAACT 60.603 57.895 27.08 0.00 42.61 2.24
946 2259 2.632544 GGGTTGCGTTGGGCCTAAC 61.633 63.158 21.39 21.39 42.61 2.34
947 2260 2.282603 GGGTTGCGTTGGGCCTAA 60.283 61.111 4.53 0.00 42.61 2.69
948 2261 3.253838 AGGGTTGCGTTGGGCCTA 61.254 61.111 4.53 0.00 42.61 3.93
976 2290 4.082523 CCGGGCTGCGAAAGAGGA 62.083 66.667 0.00 0.00 0.00 3.71
1053 2383 3.793144 GTCGGCTGCCTCGCTTTG 61.793 66.667 17.92 0.00 0.00 2.77
1178 2508 2.038975 AGGTAGCGGAGGAAGGCA 59.961 61.111 0.00 0.00 0.00 4.75
1363 2702 3.117171 CGTCGTCGGAGTCGGAGT 61.117 66.667 0.00 0.00 39.90 3.85
1661 3006 1.427753 TCACCAGGGTCACTCAGACTA 59.572 52.381 0.00 0.00 46.72 2.59
1742 3156 4.095932 TCATCATCATCACTGCTTTCTTGC 59.904 41.667 0.00 0.00 0.00 4.01
1877 3291 3.311110 GGGTCCCTCTGCGACACA 61.311 66.667 0.00 0.00 33.64 3.72
1937 3351 1.207791 AATCCTCGATCTTGGGCTGT 58.792 50.000 0.00 0.00 0.00 4.40
2119 3533 0.605589 AAACTCCAGCTCGTCCTCTG 59.394 55.000 0.00 0.00 0.00 3.35
2300 3714 2.347490 CACCTTGCTGTAGGCCGT 59.653 61.111 0.00 0.00 38.99 5.68
2320 3739 0.888619 TTCACCTACTGGAGCACTCG 59.111 55.000 0.00 0.00 37.04 4.18
2324 3743 2.047061 ACTTGTTCACCTACTGGAGCA 58.953 47.619 0.00 0.00 37.04 4.26
2325 3744 2.037251 TCACTTGTTCACCTACTGGAGC 59.963 50.000 0.00 0.00 37.04 4.70
2351 3770 4.702131 AGATGAAACATTACCAAGAGCCAC 59.298 41.667 0.00 0.00 0.00 5.01
2385 3804 9.832445 ACAATCTGAAGAAAACTGTTACTTCTA 57.168 29.630 25.57 19.08 39.28 2.10
2397 3816 5.531634 GGTTGCATCACAATCTGAAGAAAA 58.468 37.500 0.00 0.00 41.27 2.29
2426 3845 4.498513 CCCGGGAAACAGAAAAACAAGTAC 60.499 45.833 18.48 0.00 0.00 2.73
2431 3850 2.025898 GTCCCGGGAAACAGAAAAACA 58.974 47.619 28.84 0.00 0.00 2.83
2433 3852 2.740506 AGTCCCGGGAAACAGAAAAA 57.259 45.000 28.84 0.00 0.00 1.94
2436 3858 1.213430 ACAAAGTCCCGGGAAACAGAA 59.787 47.619 28.84 0.00 0.00 3.02
2440 3862 2.094906 GCATTACAAAGTCCCGGGAAAC 60.095 50.000 28.84 15.53 0.00 2.78
2443 3865 0.988832 AGCATTACAAAGTCCCGGGA 59.011 50.000 22.63 22.63 0.00 5.14
2446 3868 4.671766 GCAACTTAGCATTACAAAGTCCCG 60.672 45.833 0.00 0.00 32.42 5.14
2447 3869 4.459337 AGCAACTTAGCATTACAAAGTCCC 59.541 41.667 0.00 0.00 36.85 4.46
2450 3872 8.883731 CATACTAGCAACTTAGCATTACAAAGT 58.116 33.333 0.00 0.00 36.85 2.66
2451 3873 8.338259 CCATACTAGCAACTTAGCATTACAAAG 58.662 37.037 0.00 0.00 36.85 2.77
2464 3886 5.468658 AGAGGTAATCCCATACTAGCAACT 58.531 41.667 0.00 0.00 34.66 3.16
2530 3957 5.458015 GCCACAAACTTCCACTACAAATAC 58.542 41.667 0.00 0.00 0.00 1.89
2582 4009 8.164070 GGGGGTGTATTCATGTTTAAGAGATAT 58.836 37.037 0.00 0.00 0.00 1.63
2591 4018 8.511126 AGAAATATAGGGGGTGTATTCATGTTT 58.489 33.333 0.00 0.00 0.00 2.83
2624 4059 9.579768 GATAGATACAAGCAGGTACATATGAAG 57.420 37.037 10.38 0.00 0.00 3.02
2649 4087 9.859427 CTCAGTTGAAATGCCAAAATAAATAGA 57.141 29.630 0.00 0.00 0.00 1.98
2671 4110 9.327628 CCTATATATCATTGCCTCAATTCTCAG 57.672 37.037 0.00 0.00 31.05 3.35
2705 4144 7.897864 TCAAAGTTAAGACCTTTTTGACCAAA 58.102 30.769 4.77 0.00 34.04 3.28
2717 4159 4.325119 GGGGAGAGTTCAAAGTTAAGACC 58.675 47.826 0.00 0.00 0.00 3.85
2726 4168 0.399075 GAACCGGGGGAGAGTTCAAA 59.601 55.000 6.32 0.00 39.71 2.69
2756 4198 1.305201 GGACCGTTGCAGAGTTCAAA 58.695 50.000 0.00 0.00 0.00 2.69
2839 4284 1.663702 GAACTGGGTGACGTGTCCG 60.664 63.158 0.00 0.00 40.83 4.79
2864 4309 4.949856 GGGAGAAAGAATGAATGCCAAGTA 59.050 41.667 0.00 0.00 0.00 2.24
2870 4315 4.021192 TGTTTGGGGAGAAAGAATGAATGC 60.021 41.667 0.00 0.00 0.00 3.56
2907 4352 1.143684 ACAGGAGTGCCATCAACAACT 59.856 47.619 0.00 0.00 36.29 3.16
2912 4357 3.942351 CTCACAGGAGTGCCATCAA 57.058 52.632 0.00 0.00 45.49 2.57
2950 4395 8.164070 GGGGTATCAAGGAACTCACATAAATAT 58.836 37.037 0.00 0.00 38.49 1.28
2965 4410 2.102578 CTTTTGGCTGGGGTATCAAGG 58.897 52.381 0.00 0.00 0.00 3.61
3003 4449 1.371558 CCTCGGGCTATAACCTGGC 59.628 63.158 1.08 0.00 36.66 4.85
3022 4468 9.357161 GGGAGTATTAGACTATATATGTCAGGG 57.643 40.741 14.00 0.00 39.06 4.45
3027 4473 8.780003 ACGGAGGGAGTATTAGACTATATATGT 58.220 37.037 0.00 0.00 39.06 2.29
3030 4476 7.147408 GGGACGGAGGGAGTATTAGACTATATA 60.147 44.444 0.00 0.00 39.06 0.86
3033 4479 4.263860 GGGACGGAGGGAGTATTAGACTAT 60.264 50.000 0.00 0.00 39.06 2.12
3048 4494 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3131 4577 9.898152 TCCCAAAATTCTTGTCTTAAATTTGTT 57.102 25.926 0.00 0.00 33.95 2.83
3132 4578 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
3133 4579 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
3134 4580 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
3135 4581 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
3136 4582 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
3137 4583 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
3138 4584 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
3139 4585 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3140 4586 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3141 4587 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3142 4588 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3143 4589 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3144 4590 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3145 4591 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3146 4592 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3147 4593 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3148 4594 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3149 4595 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3150 4596 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3151 4597 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3152 4598 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
3153 4599 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
3154 4600 2.077687 TAATGTACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
3155 4601 5.721232 CATAATAATGTACTCCCTCCGTCC 58.279 45.833 0.00 0.00 0.00 4.79
3156 4602 5.169295 GCATAATAATGTACTCCCTCCGTC 58.831 45.833 0.00 0.00 35.38 4.79
3157 4603 4.321750 CGCATAATAATGTACTCCCTCCGT 60.322 45.833 0.00 0.00 35.38 4.69
3158 4604 4.174009 CGCATAATAATGTACTCCCTCCG 58.826 47.826 0.00 0.00 35.38 4.63
3159 4605 4.020485 ACCGCATAATAATGTACTCCCTCC 60.020 45.833 0.00 0.00 35.38 4.30
3160 4606 5.148651 ACCGCATAATAATGTACTCCCTC 57.851 43.478 0.00 0.00 35.38 4.30
3161 4607 6.014647 TCTACCGCATAATAATGTACTCCCT 58.985 40.000 0.00 0.00 35.38 4.20
3162 4608 6.276832 TCTACCGCATAATAATGTACTCCC 57.723 41.667 0.00 0.00 35.38 4.30
3163 4609 7.488471 GTCATCTACCGCATAATAATGTACTCC 59.512 40.741 0.00 0.00 35.38 3.85
3164 4610 7.488471 GGTCATCTACCGCATAATAATGTACTC 59.512 40.741 0.00 0.00 38.88 2.59
3165 4611 7.321153 GGTCATCTACCGCATAATAATGTACT 58.679 38.462 0.00 0.00 38.88 2.73
3166 4612 7.521509 GGTCATCTACCGCATAATAATGTAC 57.478 40.000 0.00 0.00 38.88 2.90
3188 4634 8.463930 TTCAAGTTGATGAGAATAAAGTTGGT 57.536 30.769 6.36 0.00 0.00 3.67
3197 4643 7.493971 CCTAGACGATTTCAAGTTGATGAGAAT 59.506 37.037 6.36 3.29 0.00 2.40
3216 4662 6.089551 CAGTTGAAGTATTGAACACCTAGACG 59.910 42.308 0.00 0.00 44.92 4.18
3238 4684 1.456287 GCACTTCCCTTGGACCAGT 59.544 57.895 0.00 0.00 0.00 4.00
3242 4689 0.329596 ATCAGGCACTTCCCTTGGAC 59.670 55.000 0.00 0.00 34.60 4.02
3256 4703 4.450053 GGACAGATCTTCCAAGAATCAGG 58.550 47.826 15.17 0.00 38.77 3.86
3259 4706 4.769345 AGGGACAGATCTTCCAAGAATC 57.231 45.455 19.32 6.80 38.77 2.52
3276 4723 6.303839 AGTAAAACATTGTCTTTGCTAGGGA 58.696 36.000 10.74 0.00 0.00 4.20
3307 4754 9.793259 TCAGGAATCAAAGAAGTTTATAACAGT 57.207 29.630 0.00 0.00 0.00 3.55
3313 4760 9.971922 CTTGTTTCAGGAATCAAAGAAGTTTAT 57.028 29.630 6.89 0.00 31.43 1.40
3320 4767 6.038603 CAGTCACTTGTTTCAGGAATCAAAGA 59.961 38.462 6.89 5.69 31.85 2.52
3325 4772 5.992217 AGTACAGTCACTTGTTTCAGGAATC 59.008 40.000 0.00 0.00 32.56 2.52
3327 4774 5.353394 AGTACAGTCACTTGTTTCAGGAA 57.647 39.130 0.00 0.00 32.56 3.36
3467 4923 2.825532 GGTTGCCCAAAATAGCTTCAGA 59.174 45.455 0.00 0.00 0.00 3.27
3509 4965 0.106015 ATGGGCCACAATTAGGGAGC 60.106 55.000 9.28 0.00 0.00 4.70
3512 4968 1.134431 GCAAATGGGCCACAATTAGGG 60.134 52.381 9.28 0.00 0.00 3.53
3590 5046 2.031870 AGGACTTTGAACCAAACAGCC 58.968 47.619 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.