Multiple sequence alignment - TraesCS3A01G006100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G006100 chr3A 100.000 7588 0 0 1 7588 7253336 7260923 0.000000e+00 14013.0
1 TraesCS3A01G006100 chr3A 92.593 81 5 1 793 872 616709291 616709371 1.730000e-21 115.0
2 TraesCS3A01G006100 chr3A 95.312 64 3 0 2528 2591 7255799 7255862 1.350000e-17 102.0
3 TraesCS3A01G006100 chr3A 95.312 64 3 0 2464 2527 7255863 7255926 1.350000e-17 102.0
4 TraesCS3A01G006100 chr3B 92.987 4349 210 55 2528 6821 4145833 4141525 0.000000e+00 6253.0
5 TraesCS3A01G006100 chr3B 92.923 4352 203 58 2528 6821 4963889 4959585 0.000000e+00 6233.0
6 TraesCS3A01G006100 chr3B 89.626 829 51 15 1725 2527 4964645 4963826 0.000000e+00 1022.0
7 TraesCS3A01G006100 chr3B 89.385 829 54 14 1725 2527 4146590 4145770 0.000000e+00 1013.0
8 TraesCS3A01G006100 chr3B 87.306 772 44 20 1170 1910 4147429 4146681 0.000000e+00 833.0
9 TraesCS3A01G006100 chr3B 86.399 772 50 21 1170 1910 4965342 4964595 0.000000e+00 793.0
10 TraesCS3A01G006100 chr3B 88.265 392 18 14 6391 6771 4819346 4818972 1.940000e-120 444.0
11 TraesCS3A01G006100 chr3B 81.002 579 56 21 6793 7324 4818710 4818139 1.970000e-110 411.0
12 TraesCS3A01G006100 chr3B 81.544 531 46 21 6838 7324 3959023 3958501 2.570000e-104 390.0
13 TraesCS3A01G006100 chr3B 86.728 324 15 13 6465 6777 3959754 3959448 1.220000e-87 335.0
14 TraesCS3A01G006100 chr3B 82.160 213 19 14 886 1086 4147884 4147679 1.690000e-36 165.0
15 TraesCS3A01G006100 chr3B 89.062 128 8 1 6234 6361 3959926 3959805 3.670000e-33 154.0
16 TraesCS3A01G006100 chr3B 89.062 128 8 1 6234 6361 4819467 4819346 3.670000e-33 154.0
17 TraesCS3A01G006100 chr3D 97.295 2551 59 4 2528 5068 1770035 1767485 0.000000e+00 4320.0
18 TraesCS3A01G006100 chr3D 90.463 2548 127 57 5065 7558 1767442 1764957 0.000000e+00 3253.0
19 TraesCS3A01G006100 chr3D 90.488 1251 70 19 1298 2527 1771194 1769972 0.000000e+00 1605.0
20 TraesCS3A01G006100 chr3D 90.233 645 57 6 1 642 1772908 1772267 0.000000e+00 837.0
21 TraesCS3A01G006100 chr3D 86.207 522 44 14 643 1156 1772219 1771718 2.410000e-149 540.0
22 TraesCS3A01G006100 chr3D 92.045 352 7 7 1170 1521 1771548 1771218 6.890000e-130 475.0
23 TraesCS3A01G006100 chr3D 90.244 82 6 1 793 872 397957320 397957401 1.040000e-18 106.0
24 TraesCS3A01G006100 chr3D 90.123 81 7 1 793 872 104394546 104394466 3.750000e-18 104.0
25 TraesCS3A01G006100 chr3D 90.123 81 7 1 793 872 445623178 445623098 3.750000e-18 104.0
26 TraesCS3A01G006100 chrUn 95.221 1925 72 10 2821 4733 364139545 364141461 0.000000e+00 3027.0
27 TraesCS3A01G006100 chrUn 82.683 410 34 11 6946 7324 477149249 477149652 5.680000e-86 329.0
28 TraesCS3A01G006100 chr4D 85.959 641 58 10 1 639 309946136 309945526 0.000000e+00 656.0
29 TraesCS3A01G006100 chr4B 86.158 354 40 5 272 625 387403873 387403529 2.590000e-99 374.0
30 TraesCS3A01G006100 chr4B 91.450 269 22 1 1 268 387404414 387404146 1.200000e-97 368.0
31 TraesCS3A01G006100 chr6A 81.532 222 33 5 414 635 477519204 477518991 7.830000e-40 176.0
32 TraesCS3A01G006100 chr6A 91.358 81 6 1 793 872 105007880 105007960 8.050000e-20 110.0
33 TraesCS3A01G006100 chr6A 88.889 63 2 4 5031 5092 115275429 115275487 1.060000e-08 73.1
34 TraesCS3A01G006100 chr7D 92.500 80 6 0 793 872 602912143 602912222 1.730000e-21 115.0
35 TraesCS3A01G006100 chr7A 91.463 82 5 1 793 872 120144222 120144303 2.240000e-20 111.0
36 TraesCS3A01G006100 chr7A 86.364 66 7 2 5030 5094 98789290 98789226 3.800000e-08 71.3
37 TraesCS3A01G006100 chr1D 90.123 81 7 1 793 872 404078140 404078220 3.750000e-18 104.0
38 TraesCS3A01G006100 chr6B 86.813 91 11 1 3585 3675 705283295 705283384 4.840000e-17 100.0
39 TraesCS3A01G006100 chr5B 86.667 75 3 2 5030 5097 712861031 712860957 8.160000e-10 76.8
40 TraesCS3A01G006100 chr7B 86.301 73 3 6 5024 5093 731107202 731107270 1.060000e-08 73.1
41 TraesCS3A01G006100 chr5D 85.915 71 4 4 5028 5092 278628174 278628244 3.800000e-08 71.3
42 TraesCS3A01G006100 chr4A 83.333 78 9 4 5027 5101 597826931 597827007 1.370000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G006100 chr3A 7253336 7260923 7587 False 14013.000000 14013 100.000000 1 7588 1 chr3A.!!$F1 7587
1 TraesCS3A01G006100 chr3B 4959585 4965342 5757 True 2682.666667 6233 89.649333 1170 6821 3 chr3B.!!$R4 5651
2 TraesCS3A01G006100 chr3B 4141525 4147884 6359 True 2066.000000 6253 87.959500 886 6821 4 chr3B.!!$R2 5935
3 TraesCS3A01G006100 chr3B 4818139 4819467 1328 True 336.333333 444 86.109667 6234 7324 3 chr3B.!!$R3 1090
4 TraesCS3A01G006100 chr3B 3958501 3959926 1425 True 293.000000 390 85.778000 6234 7324 3 chr3B.!!$R1 1090
5 TraesCS3A01G006100 chr3D 1764957 1772908 7951 True 1838.333333 4320 91.121833 1 7558 6 chr3D.!!$R3 7557
6 TraesCS3A01G006100 chrUn 364139545 364141461 1916 False 3027.000000 3027 95.221000 2821 4733 1 chrUn.!!$F1 1912
7 TraesCS3A01G006100 chr4D 309945526 309946136 610 True 656.000000 656 85.959000 1 639 1 chr4D.!!$R1 638
8 TraesCS3A01G006100 chr4B 387403529 387404414 885 True 371.000000 374 88.804000 1 625 2 chr4B.!!$R1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.040336 AGCCGACATGATACTACGCG 60.040 55.000 3.53 3.53 0.00 6.01 F
354 356 0.321671 AGAGACGGATTGTGTGGTGG 59.678 55.000 0.00 0.00 0.00 4.61 F
1055 1118 0.326143 GCTCTCTCCCCCTCTCCTTT 60.326 60.000 0.00 0.00 0.00 3.11 F
2033 2830 0.685097 ATCAAGGTACACGTGGCACT 59.315 50.000 21.57 11.27 0.00 4.40 F
2200 3003 0.894141 AGCTTGTCTGTCTGCTCGAT 59.106 50.000 0.00 0.00 0.00 3.59 F
2619 3430 1.204941 AGTGACAGGGTTACATCTCGC 59.795 52.381 0.00 0.00 0.00 5.03 F
3245 4056 1.345741 TCAGCTCCACAGACTTTCCAG 59.654 52.381 0.00 0.00 0.00 3.86 F
3839 4671 1.688197 CCATTGCCAAAACAGACACCT 59.312 47.619 0.00 0.00 0.00 4.00 F
4270 5108 1.974957 TGGCTGGTTACTGCTTACTCA 59.025 47.619 0.00 0.00 40.90 3.41 F
4371 5209 2.079158 AGATGTCGTCAACTTGCCATG 58.921 47.619 0.00 0.00 0.00 3.66 F
6251 7169 0.326048 AGTGGCAGAGGAGGCTATGT 60.326 55.000 0.00 0.00 34.73 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 2037 0.802222 CGCCCATACTCGACACACTG 60.802 60.000 0.00 0.00 0.00 3.66 R
2033 2830 1.269958 CATGAGGGTCTGTCTCCACA 58.730 55.000 0.00 0.00 0.00 4.17 R
2892 3703 1.370609 CATCAGCAGAGTGGCTCTTG 58.629 55.000 0.00 0.00 43.68 3.02 R
3311 4122 1.002011 GGCACTTGAGGAAGGACCC 60.002 63.158 0.00 0.00 40.05 4.46 R
3981 4815 4.081365 GGAAAAGAACAAGGGGTGAAAACA 60.081 41.667 0.00 0.00 0.00 2.83 R
4413 5251 1.963515 AGGTGTAAGCAAAAGCAAGGG 59.036 47.619 0.00 0.00 36.26 3.95 R
4751 5592 0.316841 GAAAAATTGCAGGCACCGGA 59.683 50.000 9.46 0.00 0.00 5.14 R
5814 6714 0.108662 TGACGTAGACAGGCTGCATG 60.109 55.000 15.89 13.33 0.00 4.06 R
5886 6786 1.000607 GAAAACCTTGGCCTTCCGTTC 60.001 52.381 3.32 0.00 34.14 3.95 R
6334 7257 0.250901 ATTATGACGGATGGCCAGCC 60.251 55.000 30.82 30.82 0.00 4.85 R
7527 9116 0.319555 TTCTCGTGTGCTTCTTCCGG 60.320 55.000 0.00 0.00 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.262273 GTGTTGATTTCACTAAAGGGAAGACA 59.738 38.462 0.00 0.00 33.59 3.41
27 28 6.262273 TGTTGATTTCACTAAAGGGAAGACAC 59.738 38.462 0.00 0.00 0.00 3.67
43 44 1.202582 GACACTGGTCTCACATAGCGT 59.797 52.381 0.00 0.00 40.99 5.07
45 46 0.818296 ACTGGTCTCACATAGCGTCC 59.182 55.000 0.00 0.00 0.00 4.79
68 69 6.867662 CGGAGGAGAAATAGTAAATTGCAT 57.132 37.500 0.00 0.00 0.00 3.96
118 119 3.152341 CAGAACATTGGAAGAAGCCACT 58.848 45.455 0.00 0.00 37.75 4.00
120 121 4.154918 CAGAACATTGGAAGAAGCCACTAC 59.845 45.833 0.00 0.00 37.75 2.73
121 122 4.042187 AGAACATTGGAAGAAGCCACTACT 59.958 41.667 0.00 0.00 37.75 2.57
122 123 3.679389 ACATTGGAAGAAGCCACTACTG 58.321 45.455 0.00 0.00 37.75 2.74
134 135 2.483188 GCCACTACTGGGATCGGTAAAG 60.483 54.545 0.00 0.00 38.13 1.85
143 144 3.709653 TGGGATCGGTAAAGCTCAATACT 59.290 43.478 0.00 0.00 0.00 2.12
145 146 4.202223 GGGATCGGTAAAGCTCAATACTGA 60.202 45.833 14.56 14.56 40.61 3.41
148 149 5.339008 TCGGTAAAGCTCAATACTGATGT 57.661 39.130 10.25 0.00 33.58 3.06
162 163 2.770802 ACTGATGTCTCATGGAAGGAGG 59.229 50.000 0.00 0.00 46.50 4.30
169 170 2.248423 TCTCATGGAAGGAGGAGGATGA 59.752 50.000 0.00 0.00 46.50 2.92
184 185 1.888436 GATGACACAGGTGGAGCCGA 61.888 60.000 4.24 0.00 43.70 5.54
196 197 1.607148 TGGAGCCGACATGATACTACG 59.393 52.381 0.00 0.00 0.00 3.51
198 199 0.040336 AGCCGACATGATACTACGCG 60.040 55.000 3.53 3.53 0.00 6.01
205 206 2.361119 ACATGATACTACGCGACCACAT 59.639 45.455 15.93 7.74 0.00 3.21
227 229 2.018542 GTGCCATCATTTTGCAGCAT 57.981 45.000 0.00 0.00 35.33 3.79
231 233 2.418197 GCCATCATTTTGCAGCATGTCT 60.418 45.455 0.00 0.00 39.31 3.41
239 241 2.090400 TGCAGCATGTCTCTTCACTC 57.910 50.000 0.00 0.00 39.31 3.51
241 243 2.001159 GCAGCATGTCTCTTCACTCAG 58.999 52.381 0.00 0.00 39.31 3.35
277 279 1.326213 CGGAGGCAGACAGAGATGGT 61.326 60.000 0.00 0.00 0.00 3.55
331 333 1.761784 GTGGAGTCCTGATCAGCTCAT 59.238 52.381 23.58 9.34 32.10 2.90
345 347 4.148079 TCAGCTCATCATAGAGACGGATT 58.852 43.478 0.00 0.00 37.87 3.01
352 354 3.096852 TCATAGAGACGGATTGTGTGGT 58.903 45.455 0.00 0.00 0.00 4.16
354 356 0.321671 AGAGACGGATTGTGTGGTGG 59.678 55.000 0.00 0.00 0.00 4.61
356 358 1.599518 GACGGATTGTGTGGTGGCA 60.600 57.895 0.00 0.00 0.00 4.92
358 360 1.600636 CGGATTGTGTGGTGGCAGT 60.601 57.895 0.00 0.00 0.00 4.40
360 362 1.286880 GATTGTGTGGTGGCAGTGC 59.713 57.895 6.55 6.55 0.00 4.40
361 363 1.454572 GATTGTGTGGTGGCAGTGCA 61.455 55.000 18.61 0.00 0.00 4.57
392 394 3.687125 TCGGTGACCCTGCTATAGATAG 58.313 50.000 3.21 0.70 0.00 2.08
398 400 3.422796 ACCCTGCTATAGATAGACCACG 58.577 50.000 3.21 0.00 32.05 4.94
403 405 4.079253 TGCTATAGATAGACCACGCATGA 58.921 43.478 3.21 0.00 32.05 3.07
431 433 5.991933 ATGGTGAGCGACATTAGATATCT 57.008 39.130 10.73 10.73 0.00 1.98
437 439 7.364200 GTGAGCGACATTAGATATCTACACTT 58.636 38.462 12.12 0.00 0.00 3.16
454 456 3.588057 TTCGCACTCGGCAGCATGA 62.588 57.895 0.00 0.00 45.17 3.07
461 463 1.078918 TCGGCAGCATGAGACAAGG 60.079 57.895 0.00 0.00 39.69 3.61
463 465 0.463295 CGGCAGCATGAGACAAGGAT 60.463 55.000 0.00 0.00 39.69 3.24
507 509 3.249189 GTCACACCCTGGCCCAGA 61.249 66.667 13.74 0.00 32.44 3.86
537 539 1.069973 CGCTCGCAAAGACATCAACAA 60.070 47.619 0.00 0.00 0.00 2.83
556 558 3.949754 ACAATGTGATCATGATGTGTCCC 59.050 43.478 14.30 0.00 34.19 4.46
565 567 5.698741 TCATGATGTGTCCCTACTGAAAT 57.301 39.130 0.00 0.00 0.00 2.17
600 602 7.087409 TGTAAGCATGATTGTAATGACCTTG 57.913 36.000 6.43 0.00 0.00 3.61
630 632 5.728898 GCAATGGAAGACTCTTATTCGCAAG 60.729 44.000 0.00 0.00 0.00 4.01
645 695 2.192624 CGCAAGAAAAACAACCACCTG 58.807 47.619 0.00 0.00 43.02 4.00
670 720 6.881602 GGTACAAAAGAGACCTGAAATCTCAT 59.118 38.462 4.92 0.00 44.34 2.90
673 723 6.654161 ACAAAAGAGACCTGAAATCTCATCAG 59.346 38.462 4.92 0.00 44.34 2.90
679 729 5.045724 AGACCTGAAATCTCATCAGAGCTTT 60.046 40.000 5.16 0.00 45.74 3.51
692 742 6.657966 TCATCAGAGCTTTCACTCAATTTCAT 59.342 34.615 0.00 0.00 39.26 2.57
722 772 7.592885 ATGGATCAAAATCACTGATTAAGGG 57.407 36.000 4.65 0.00 33.63 3.95
723 773 6.730447 TGGATCAAAATCACTGATTAAGGGA 58.270 36.000 4.65 1.89 44.43 4.20
725 775 6.603201 GGATCAAAATCACTGATTAAGGGACA 59.397 38.462 4.65 0.00 42.62 4.02
737 787 2.959465 AAGGGACACTCCTTCCAAAG 57.041 50.000 0.00 0.00 43.13 2.77
738 788 2.118403 AGGGACACTCCTTCCAAAGA 57.882 50.000 0.00 0.00 36.57 2.52
739 789 1.700186 AGGGACACTCCTTCCAAAGAC 59.300 52.381 0.00 0.00 36.57 3.01
743 793 1.143073 ACACTCCTTCCAAAGACCACC 59.857 52.381 0.00 0.00 0.00 4.61
748 798 1.318576 CTTCCAAAGACCACCCACAC 58.681 55.000 0.00 0.00 0.00 3.82
754 804 1.222567 AAGACCACCCACACCTTCTT 58.777 50.000 0.00 0.00 0.00 2.52
836 886 6.595794 TCAAAACGCTTTATCTTTTAGACCG 58.404 36.000 0.00 0.00 0.00 4.79
842 892 4.492085 GCTTTATCTTTTAGACCGTGCGTC 60.492 45.833 0.00 0.00 42.32 5.19
851 901 2.273370 GACCGTGCGTCTAAATCTCA 57.727 50.000 0.00 0.00 38.57 3.27
868 918 2.096174 TCTCAAACCGTTTTCACCGTTG 59.904 45.455 0.00 0.00 0.00 4.10
869 919 1.132643 TCAAACCGTTTTCACCGTTGG 59.867 47.619 0.00 0.00 0.00 3.77
870 920 1.132643 CAAACCGTTTTCACCGTTGGA 59.867 47.619 0.00 0.00 0.00 3.53
871 921 1.682740 AACCGTTTTCACCGTTGGAT 58.317 45.000 0.00 0.00 0.00 3.41
872 922 2.547299 ACCGTTTTCACCGTTGGATA 57.453 45.000 0.00 0.00 0.00 2.59
873 923 2.419667 ACCGTTTTCACCGTTGGATAG 58.580 47.619 0.00 0.00 0.00 2.08
898 948 3.534554 CTGTGAACGGATGATTGGATCA 58.465 45.455 0.00 0.00 44.55 2.92
981 1039 3.116091 GGAAACGCCATCCATCCAT 57.884 52.632 0.00 0.00 36.92 3.41
1014 1077 2.747855 GGAGCCAAAGCGGACCAG 60.748 66.667 0.00 0.00 46.67 4.00
1055 1118 0.326143 GCTCTCTCCCCCTCTCCTTT 60.326 60.000 0.00 0.00 0.00 3.11
1058 1121 1.001760 TCTCCCCCTCTCCTTTCCG 59.998 63.158 0.00 0.00 0.00 4.30
1062 1125 1.687493 CCCCTCTCCTTTCCGCTCT 60.687 63.158 0.00 0.00 0.00 4.09
1064 1127 1.435515 CCTCTCCTTTCCGCTCTCG 59.564 63.158 0.00 0.00 0.00 4.04
1066 1129 1.662438 CTCTCCTTTCCGCTCTCGCT 61.662 60.000 0.00 0.00 0.00 4.93
1068 1131 2.202810 CCTTTCCGCTCTCGCTCC 60.203 66.667 0.00 0.00 0.00 4.70
1069 1132 2.202810 CTTTCCGCTCTCGCTCCC 60.203 66.667 0.00 0.00 0.00 4.30
1163 1229 4.824515 CGCCCTCCTCGTCCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
1164 1230 2.835895 GCCCTCCTCGTCCTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
1165 1231 2.123640 CCCTCCTCGTCCTCCTCC 60.124 72.222 0.00 0.00 0.00 4.30
1166 1232 2.695970 CCCTCCTCGTCCTCCTCCT 61.696 68.421 0.00 0.00 0.00 3.69
1167 1233 1.152839 CCTCCTCGTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
1168 1234 1.152839 CTCCTCGTCCTCCTCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
1340 1572 2.671963 GCAACGGTGAGAACCCCC 60.672 66.667 3.55 0.00 0.00 5.40
1341 1573 2.833227 CAACGGTGAGAACCCCCA 59.167 61.111 0.00 0.00 0.00 4.96
1342 1574 1.599797 CAACGGTGAGAACCCCCAC 60.600 63.158 0.00 0.00 0.00 4.61
1343 1575 1.768888 AACGGTGAGAACCCCCACT 60.769 57.895 0.00 0.00 33.99 4.00
1344 1576 1.765597 AACGGTGAGAACCCCCACTC 61.766 60.000 0.00 0.00 33.99 3.51
1424 1656 3.195698 GTCCCCAGATGCGTTCGC 61.196 66.667 10.34 10.34 0.00 4.70
1543 2001 4.436998 ACTCGCACGTAGGCCTGC 62.437 66.667 17.99 14.54 0.00 4.85
1579 2037 2.351726 GCGGTTACATGATGGAGTGAAC 59.648 50.000 0.00 0.00 0.00 3.18
1630 2088 6.933514 AAATCCTTTGATTCCTTGCCTTTA 57.066 33.333 0.00 0.00 40.34 1.85
1631 2089 5.921962 ATCCTTTGATTCCTTGCCTTTAC 57.078 39.130 0.00 0.00 0.00 2.01
1632 2090 4.998051 TCCTTTGATTCCTTGCCTTTACT 58.002 39.130 0.00 0.00 0.00 2.24
1648 2107 1.388837 TACTGCTAGGATTCGCCGCA 61.389 55.000 0.00 0.00 43.43 5.69
1675 2172 3.309682 CCGCCGCATCTTGTTATATATGG 59.690 47.826 0.00 0.00 0.00 2.74
1705 2202 2.158871 TGAACAGCCAGTTAACGGTTCT 60.159 45.455 20.11 10.01 41.51 3.01
1709 2206 1.968493 AGCCAGTTAACGGTTCTCTCA 59.032 47.619 14.94 0.00 0.00 3.27
1718 2215 3.324207 GGTTCTCTCACCGCCTTTT 57.676 52.632 0.00 0.00 0.00 2.27
1720 2217 1.594331 GTTCTCTCACCGCCTTTTGT 58.406 50.000 0.00 0.00 0.00 2.83
1723 2220 1.856265 CTCTCACCGCCTTTTGTGCC 61.856 60.000 0.00 0.00 32.51 5.01
1806 2303 6.263168 GGTTAGCTGTAATTATCAACATGGCT 59.737 38.462 0.00 0.00 33.35 4.75
1953 2750 1.522569 CGAAGGGCGGAAGAAGGAT 59.477 57.895 0.00 0.00 36.03 3.24
2027 2824 3.490419 GGAAGCGATATCAAGGTACACGT 60.490 47.826 3.12 0.00 0.00 4.49
2033 2830 0.685097 ATCAAGGTACACGTGGCACT 59.315 50.000 21.57 11.27 0.00 4.40
2038 2835 1.068417 GTACACGTGGCACTGTGGA 59.932 57.895 30.90 25.57 40.39 4.02
2039 2836 0.944311 GTACACGTGGCACTGTGGAG 60.944 60.000 30.90 14.47 40.39 3.86
2040 2837 1.110518 TACACGTGGCACTGTGGAGA 61.111 55.000 30.90 19.93 40.39 3.71
2081 2878 9.699410 ATCTTATTATGTTGTTTCCATTCCTGA 57.301 29.630 0.00 0.00 0.00 3.86
2082 2879 9.699410 TCTTATTATGTTGTTTCCATTCCTGAT 57.301 29.630 0.00 0.00 0.00 2.90
2085 2882 5.665916 ATGTTGTTTCCATTCCTGATTCC 57.334 39.130 0.00 0.00 0.00 3.01
2086 2883 4.739793 TGTTGTTTCCATTCCTGATTCCT 58.260 39.130 0.00 0.00 0.00 3.36
2087 2884 4.523943 TGTTGTTTCCATTCCTGATTCCTG 59.476 41.667 0.00 0.00 0.00 3.86
2109 2908 3.476295 ACTAAATGCGTGCACTGAATG 57.524 42.857 16.19 0.00 0.00 2.67
2129 2928 3.349006 CCTGTCGCGTTGCTGCTT 61.349 61.111 5.77 0.00 0.00 3.91
2132 2931 1.904852 CTGTCGCGTTGCTGCTTCAT 61.905 55.000 5.77 0.00 0.00 2.57
2171 2974 2.561419 TCTGTACACAGCTTGGTAGGAC 59.439 50.000 4.43 0.00 43.46 3.85
2200 3003 0.894141 AGCTTGTCTGTCTGCTCGAT 59.106 50.000 0.00 0.00 0.00 3.59
2218 3021 2.046892 GGTGTCGAGCAGCCATGT 60.047 61.111 6.07 0.00 39.53 3.21
2232 3035 1.672737 GCCATGTGTGACGTCATCTCA 60.673 52.381 23.12 20.04 0.00 3.27
2292 3095 6.887002 TGTTGTATAGTTCACATTATTGGGCA 59.113 34.615 0.00 0.00 0.00 5.36
2316 3127 5.801012 TGCCTTTTGTTTAAATCGCAAAAC 58.199 33.333 9.79 4.64 37.24 2.43
2346 3157 2.535166 CAGCGTTTGTGAAACCATGTTG 59.465 45.455 0.00 0.00 38.14 3.33
2382 3193 6.889595 TGGATATGGTAGGATTGCATATGA 57.110 37.500 6.97 0.00 0.00 2.15
2419 3230 7.678947 ATATTCGAGATTTAAGCCAATCAGG 57.321 36.000 4.25 0.00 35.85 3.86
2456 3267 9.717942 ATACTATGATGGCTAGATTTTGAGAAC 57.282 33.333 0.00 0.00 0.00 3.01
2463 3274 4.636206 GGCTAGATTTTGAGAACGTTCCAT 59.364 41.667 24.22 7.25 0.00 3.41
2464 3275 5.220681 GGCTAGATTTTGAGAACGTTCCATC 60.221 44.000 24.22 16.45 0.00 3.51
2465 3276 5.582665 GCTAGATTTTGAGAACGTTCCATCT 59.417 40.000 24.22 21.38 0.00 2.90
2466 3277 6.092807 GCTAGATTTTGAGAACGTTCCATCTT 59.907 38.462 24.22 5.64 0.00 2.40
2467 3278 6.246420 AGATTTTGAGAACGTTCCATCTTG 57.754 37.500 24.22 0.00 0.00 3.02
2468 3279 4.829064 TTTTGAGAACGTTCCATCTTGG 57.171 40.909 24.22 0.00 39.43 3.61
2469 3280 3.485463 TTGAGAACGTTCCATCTTGGT 57.515 42.857 24.22 3.25 39.03 3.67
2470 3281 4.610605 TTGAGAACGTTCCATCTTGGTA 57.389 40.909 24.22 3.34 39.03 3.25
2471 3282 4.610605 TGAGAACGTTCCATCTTGGTAA 57.389 40.909 24.22 0.00 39.03 2.85
2472 3283 5.160607 TGAGAACGTTCCATCTTGGTAAT 57.839 39.130 24.22 1.13 39.03 1.89
2473 3284 4.935205 TGAGAACGTTCCATCTTGGTAATG 59.065 41.667 24.22 0.00 39.03 1.90
2474 3285 4.906618 AGAACGTTCCATCTTGGTAATGT 58.093 39.130 24.22 0.00 39.03 2.71
2475 3286 6.045072 AGAACGTTCCATCTTGGTAATGTA 57.955 37.500 24.22 0.00 39.03 2.29
2476 3287 6.650120 AGAACGTTCCATCTTGGTAATGTAT 58.350 36.000 24.22 0.00 39.03 2.29
2477 3288 7.110155 AGAACGTTCCATCTTGGTAATGTATT 58.890 34.615 24.22 0.00 39.03 1.89
2478 3289 8.262227 AGAACGTTCCATCTTGGTAATGTATTA 58.738 33.333 24.22 0.00 39.03 0.98
2479 3290 8.795842 AACGTTCCATCTTGGTAATGTATTAA 57.204 30.769 0.00 0.00 39.03 1.40
2480 3291 8.974060 ACGTTCCATCTTGGTAATGTATTAAT 57.026 30.769 0.00 0.00 39.03 1.40
2481 3292 9.403583 ACGTTCCATCTTGGTAATGTATTAATT 57.596 29.630 0.00 0.00 39.03 1.40
2482 3293 9.878599 CGTTCCATCTTGGTAATGTATTAATTC 57.121 33.333 0.00 0.00 39.03 2.17
2500 3311 8.594881 ATTAATTCAGTTATGTAGCGAGAAGG 57.405 34.615 0.00 0.00 0.00 3.46
2501 3312 5.599999 ATTCAGTTATGTAGCGAGAAGGT 57.400 39.130 0.00 0.00 0.00 3.50
2502 3313 5.401531 TTCAGTTATGTAGCGAGAAGGTT 57.598 39.130 0.00 0.00 0.00 3.50
2503 3314 5.401531 TCAGTTATGTAGCGAGAAGGTTT 57.598 39.130 0.00 0.00 0.00 3.27
2504 3315 5.408356 TCAGTTATGTAGCGAGAAGGTTTC 58.592 41.667 0.00 0.00 0.00 2.78
2505 3316 5.047590 TCAGTTATGTAGCGAGAAGGTTTCA 60.048 40.000 0.00 0.00 0.00 2.69
2506 3317 5.812642 CAGTTATGTAGCGAGAAGGTTTCAT 59.187 40.000 0.00 0.00 0.00 2.57
2507 3318 6.313905 CAGTTATGTAGCGAGAAGGTTTCATT 59.686 38.462 0.00 0.00 0.00 2.57
2508 3319 6.535508 AGTTATGTAGCGAGAAGGTTTCATTC 59.464 38.462 0.00 0.00 0.00 2.67
2509 3320 4.537135 TGTAGCGAGAAGGTTTCATTCT 57.463 40.909 0.00 0.00 39.69 2.40
2510 3321 4.894784 TGTAGCGAGAAGGTTTCATTCTT 58.105 39.130 0.00 0.00 37.14 2.52
2511 3322 5.305585 TGTAGCGAGAAGGTTTCATTCTTT 58.694 37.500 0.00 0.00 37.14 2.52
2512 3323 4.756084 AGCGAGAAGGTTTCATTCTTTG 57.244 40.909 0.00 0.00 37.14 2.77
2513 3324 4.137543 AGCGAGAAGGTTTCATTCTTTGT 58.862 39.130 0.00 0.00 37.14 2.83
2514 3325 5.305585 AGCGAGAAGGTTTCATTCTTTGTA 58.694 37.500 0.00 0.00 37.14 2.41
2515 3326 5.763204 AGCGAGAAGGTTTCATTCTTTGTAA 59.237 36.000 0.00 0.00 37.14 2.41
2516 3327 6.431234 AGCGAGAAGGTTTCATTCTTTGTAAT 59.569 34.615 0.00 0.00 37.14 1.89
2517 3328 6.524586 GCGAGAAGGTTTCATTCTTTGTAATG 59.475 38.462 0.00 0.00 37.14 1.90
2518 3329 7.584987 CGAGAAGGTTTCATTCTTTGTAATGT 58.415 34.615 0.00 0.00 37.14 2.71
2519 3330 8.717821 CGAGAAGGTTTCATTCTTTGTAATGTA 58.282 33.333 0.00 0.00 37.14 2.29
2619 3430 1.204941 AGTGACAGGGTTACATCTCGC 59.795 52.381 0.00 0.00 0.00 5.03
2623 3434 3.130516 TGACAGGGTTACATCTCGCTAAG 59.869 47.826 0.00 0.00 0.00 2.18
2892 3703 5.095490 GCAAATACATGCAACTTGTACCTC 58.905 41.667 0.84 0.00 45.70 3.85
3218 4029 2.599645 CTATGCTTCAGCCCACGCCT 62.600 60.000 0.00 0.00 41.18 5.52
3245 4056 1.345741 TCAGCTCCACAGACTTTCCAG 59.654 52.381 0.00 0.00 0.00 3.86
3257 4068 4.956700 CAGACTTTCCAGTATCCAGGACTA 59.043 45.833 0.00 0.00 32.62 2.59
3311 4122 2.277969 CAACCATCTGCTACTGCTCAG 58.722 52.381 0.00 0.00 40.48 3.35
3497 4308 3.475575 TGAAACTAGTGCAACAGCATCA 58.524 40.909 0.00 0.00 41.43 3.07
3747 4573 3.258228 ATCGCCAAGCCTGCTGACA 62.258 57.895 0.00 0.00 0.00 3.58
3839 4671 1.688197 CCATTGCCAAAACAGACACCT 59.312 47.619 0.00 0.00 0.00 4.00
3980 4814 4.515944 TGCTTGATTTTGCCAAAGGAATTG 59.484 37.500 0.00 0.00 38.84 2.32
3981 4815 4.516321 GCTTGATTTTGCCAAAGGAATTGT 59.484 37.500 0.00 0.00 37.32 2.71
4009 4845 5.520751 TCACCCCTTGTTCTTTTCCTTTTA 58.479 37.500 0.00 0.00 0.00 1.52
4133 4970 7.482169 TGTCCAACTCAGAATATCACTAACT 57.518 36.000 0.00 0.00 0.00 2.24
4192 5030 7.622081 TGTTAGAGGGTAATACTGGATTCTTCA 59.378 37.037 0.00 0.00 0.00 3.02
4270 5108 1.974957 TGGCTGGTTACTGCTTACTCA 59.025 47.619 0.00 0.00 40.90 3.41
4287 5125 6.586844 GCTTACTCAACCAGTTTAGTGTCTAG 59.413 42.308 7.47 0.00 36.43 2.43
4315 5153 4.396166 CCGCCTCAAAACTCTGTTTATCAT 59.604 41.667 0.00 0.00 0.00 2.45
4371 5209 2.079158 AGATGTCGTCAACTTGCCATG 58.921 47.619 0.00 0.00 0.00 3.66
4375 5213 2.224185 TGTCGTCAACTTGCCATGTACT 60.224 45.455 0.00 0.00 0.00 2.73
4380 5218 3.062639 GTCAACTTGCCATGTACTCATCG 59.937 47.826 0.00 0.00 31.15 3.84
4413 5251 8.825667 TTGTTTCTTAATGCAAAATAAGGGAC 57.174 30.769 13.91 12.82 31.49 4.46
4417 5255 6.260663 TCTTAATGCAAAATAAGGGACCCTT 58.739 36.000 28.79 28.79 46.63 3.95
4492 5331 5.628193 CGTTAAACCTACTAGGCATATGTCG 59.372 44.000 4.29 0.00 39.63 4.35
4512 5351 7.310072 TGTCGTCATAACAACTTTCTGAAAA 57.690 32.000 4.18 0.00 0.00 2.29
4513 5352 7.753659 TGTCGTCATAACAACTTTCTGAAAAA 58.246 30.769 4.18 0.00 0.00 1.94
4516 5355 8.836413 TCGTCATAACAACTTTCTGAAAAATCT 58.164 29.630 4.18 0.00 0.00 2.40
4556 5395 5.887214 TTCTGTGCTCATTATTAGGCCTA 57.113 39.130 8.91 8.91 0.00 3.93
4736 5577 7.231925 TGAATGCTATATTGATCCTGCATGTTT 59.768 33.333 0.00 0.00 40.41 2.83
4751 5592 6.372659 CCTGCATGTTTTCATCTGTACTACTT 59.627 38.462 0.00 0.00 38.64 2.24
4846 5687 5.302823 GCTTGCTATCCAAATTATCTTGGGT 59.697 40.000 2.68 0.00 45.16 4.51
4937 5778 8.319057 AGGGAATACTTGTATCAGTTGTGATA 57.681 34.615 0.00 0.00 41.96 2.15
4995 5836 9.914131 TGTTTATCAGTATACTGCACATATCTC 57.086 33.333 25.31 12.36 43.46 2.75
5129 6022 6.958255 TCACATGTTCTGAATTTGTACACAG 58.042 36.000 0.00 0.00 0.00 3.66
5130 6023 6.017192 TCACATGTTCTGAATTTGTACACAGG 60.017 38.462 10.36 0.54 0.00 4.00
5146 6043 4.134563 ACACAGGGAAAAGTGACATGTAC 58.865 43.478 0.00 0.00 39.03 2.90
5220 6117 3.602390 TTAGTTCTCGTTTGCAAGTGC 57.398 42.857 0.00 0.00 42.50 4.40
5297 6194 6.219473 CCTCGCTCATCTAATTTCTGTATGT 58.781 40.000 0.00 0.00 0.00 2.29
5337 6236 4.899502 TGGAGAAGAGGAGCTTTTAACTG 58.100 43.478 0.00 0.00 36.83 3.16
5497 6396 8.573035 TCTTATTAAAGAACGTTTGGCTTGATT 58.427 29.630 0.46 0.00 38.81 2.57
5757 6656 6.705825 GGTTTGATAATTTCTTGTGCCTGTTT 59.294 34.615 0.00 0.00 0.00 2.83
5844 6744 4.806247 CCTGTCTACGTCAAGGATGATTTC 59.194 45.833 0.00 0.00 38.01 2.17
5862 6762 4.367039 TTTCTTCGATTCCCTTTCTGGT 57.633 40.909 0.00 0.00 0.00 4.00
5886 6786 1.002134 ATTTGGACGAGGTGGGCAG 60.002 57.895 0.00 0.00 0.00 4.85
5980 6882 6.735678 TTCTTTTCTGATGCGCTTTGTATA 57.264 33.333 9.73 0.00 0.00 1.47
5984 6886 4.295857 TCTGATGCGCTTTGTATACGTA 57.704 40.909 9.73 0.00 0.00 3.57
6015 6918 3.088532 TGTCTTTGTGCAGACTTTTGGT 58.911 40.909 5.54 0.00 43.32 3.67
6022 6925 3.243035 TGTGCAGACTTTTGGTGATTTCG 60.243 43.478 0.00 0.00 0.00 3.46
6204 7119 3.672503 ATGGGAAGGGGTGGTGGC 61.673 66.667 0.00 0.00 0.00 5.01
6224 7139 2.561419 GCGGGCAGGATAACTACTATGA 59.439 50.000 0.00 0.00 0.00 2.15
6251 7169 0.326048 AGTGGCAGAGGAGGCTATGT 60.326 55.000 0.00 0.00 34.73 2.29
6372 7295 1.829523 TACACCGGTGTTGTAGCCCC 61.830 60.000 42.62 0.00 41.83 5.80
6381 7304 1.202879 TGTTGTAGCCCCTTCACTTGG 60.203 52.381 0.00 0.00 0.00 3.61
6382 7305 0.251165 TTGTAGCCCCTTCACTTGGC 60.251 55.000 0.00 0.00 45.70 4.52
6447 7370 1.228124 TTGGCTTGTCCCTTGGTCG 60.228 57.895 0.00 0.00 0.00 4.79
6448 7371 2.359975 GGCTTGTCCCTTGGTCGG 60.360 66.667 0.00 0.00 0.00 4.79
6541 7489 5.519808 AGTCTGAGATGTGGTTGTATAGGA 58.480 41.667 0.00 0.00 0.00 2.94
6601 7549 4.454678 TCTTATCTCATCACCCATTGTGC 58.545 43.478 0.00 0.00 45.03 4.57
6672 7623 3.252458 ACTGTTTTGTACCGGAATTGAGC 59.748 43.478 9.46 0.00 0.00 4.26
6673 7624 3.215151 TGTTTTGTACCGGAATTGAGCA 58.785 40.909 9.46 0.00 0.00 4.26
6674 7625 3.252215 TGTTTTGTACCGGAATTGAGCAG 59.748 43.478 9.46 0.00 0.00 4.24
6675 7626 3.410631 TTTGTACCGGAATTGAGCAGA 57.589 42.857 9.46 0.00 0.00 4.26
6676 7627 3.410631 TTGTACCGGAATTGAGCAGAA 57.589 42.857 9.46 0.00 0.00 3.02
6798 7994 2.204090 TCCCCTCCTGGTTGGACC 60.204 66.667 9.43 0.00 40.56 4.46
6833 8148 1.946768 GTGCTGTGAGGCAAGTGTAAA 59.053 47.619 0.00 0.00 44.18 2.01
6834 8149 2.357637 GTGCTGTGAGGCAAGTGTAAAA 59.642 45.455 0.00 0.00 44.18 1.52
6835 8150 2.618241 TGCTGTGAGGCAAGTGTAAAAG 59.382 45.455 0.00 0.00 39.43 2.27
6837 8152 3.315191 GCTGTGAGGCAAGTGTAAAAGAA 59.685 43.478 0.00 0.00 0.00 2.52
6838 8153 4.202010 GCTGTGAGGCAAGTGTAAAAGAAA 60.202 41.667 0.00 0.00 0.00 2.52
6873 8191 3.335183 TCTGGTTTGTTGGGGATATGGAA 59.665 43.478 0.00 0.00 0.00 3.53
6874 8192 4.093011 CTGGTTTGTTGGGGATATGGAAA 58.907 43.478 0.00 0.00 0.00 3.13
6881 8209 3.290948 TGGGGATATGGAAAAAGTCGG 57.709 47.619 0.00 0.00 0.00 4.79
6908 8236 2.794350 CGCTTTCATTGTTTGTTGGGTC 59.206 45.455 0.00 0.00 0.00 4.46
6942 8460 5.584251 TCTTTTTGGCCTTTGTTTTGCTTAG 59.416 36.000 3.32 0.00 0.00 2.18
6944 8462 3.726291 TGGCCTTTGTTTTGCTTAGAC 57.274 42.857 3.32 0.00 0.00 2.59
6992 8510 2.232452 CCTCTTGTGTACTCCCTCTGTG 59.768 54.545 0.00 0.00 0.00 3.66
7026 8550 5.740290 TTTTACAGAGGGAGTAGACCAAG 57.260 43.478 0.00 0.00 0.00 3.61
7052 8576 6.070995 AGGGATATATCGCGAAACAGGAATAA 60.071 38.462 15.24 0.00 43.65 1.40
7053 8577 6.592607 GGGATATATCGCGAAACAGGAATAAA 59.407 38.462 15.24 0.00 0.00 1.40
7063 8587 7.180748 GCGAAACAGGAATAAAAGTAGTGATC 58.819 38.462 0.00 0.00 0.00 2.92
7118 8661 6.128769 GCAAGTTTTAGTCGTGTTTTTGGTTT 60.129 34.615 0.00 0.00 0.00 3.27
7131 8674 0.684805 TTGGTTTCCTTTGGTGGCGT 60.685 50.000 0.00 0.00 0.00 5.68
7134 8677 1.537348 GGTTTCCTTTGGTGGCGTTTC 60.537 52.381 0.00 0.00 0.00 2.78
7149 8692 2.758009 CGTTTCCTCGTCCTGGTAAAA 58.242 47.619 0.00 0.00 0.00 1.52
7184 8727 0.253610 TTGTGTCCCGACTTGGTTGT 59.746 50.000 0.00 0.00 35.15 3.32
7191 8734 3.187842 GTCCCGACTTGGTTGTATTGAAC 59.812 47.826 0.00 0.00 35.15 3.18
7220 8763 5.283060 AGATAAATGCAATACGAATCCGC 57.717 39.130 0.00 0.00 39.95 5.54
7260 8808 0.667993 CATCCGGCTGTGTGTGTTTT 59.332 50.000 0.00 0.00 0.00 2.43
7262 8810 0.678366 TCCGGCTGTGTGTGTTTTGT 60.678 50.000 0.00 0.00 0.00 2.83
7263 8811 0.172352 CCGGCTGTGTGTGTTTTGTT 59.828 50.000 0.00 0.00 0.00 2.83
7264 8812 1.267365 CGGCTGTGTGTGTTTTGTTG 58.733 50.000 0.00 0.00 0.00 3.33
7265 8813 1.135546 CGGCTGTGTGTGTTTTGTTGA 60.136 47.619 0.00 0.00 0.00 3.18
7293 8852 1.418637 GGTAGATAATCGGTTGGGCCA 59.581 52.381 0.00 0.00 36.97 5.36
7302 8861 4.404654 GTTGGGCCAGCGCTTTCG 62.405 66.667 7.50 0.00 39.07 3.46
7337 8900 7.161773 TGTTGTATTGGTAGTAGTAGTGGAC 57.838 40.000 0.00 0.00 0.00 4.02
7344 8907 3.185391 GGTAGTAGTAGTGGACGCGTATC 59.815 52.174 13.97 8.63 0.00 2.24
7397 8964 1.967066 AGAAGATAGGACCGCATCTGG 59.033 52.381 11.19 0.00 31.87 3.86
7409 8976 0.030638 GCATCTGGTTTGCGTGTTGT 59.969 50.000 0.00 0.00 0.00 3.32
7411 8978 1.333308 CATCTGGTTTGCGTGTTGTGA 59.667 47.619 0.00 0.00 0.00 3.58
7436 9003 4.277423 GCTGGCCTAGAACTAGAACTAGAG 59.723 50.000 20.66 14.45 38.53 2.43
7437 9004 5.442391 CTGGCCTAGAACTAGAACTAGAGT 58.558 45.833 20.66 3.35 38.53 3.24
7438 9005 6.572182 TGGCCTAGAACTAGAACTAGAGTA 57.428 41.667 20.66 9.62 38.53 2.59
7439 9006 6.593807 TGGCCTAGAACTAGAACTAGAGTAG 58.406 44.000 20.66 10.89 38.53 2.57
7440 9007 6.386342 TGGCCTAGAACTAGAACTAGAGTAGA 59.614 42.308 20.66 5.82 38.53 2.59
7452 9019 5.261209 ACTAGAGTAGAATGAAGCTGCTG 57.739 43.478 1.35 0.00 0.00 4.41
7472 9051 3.791245 TGCTTGTGCTTGTTTTAAAGGG 58.209 40.909 0.00 0.00 40.48 3.95
7492 9071 0.851332 AAGGGAAGGGAAGGGAAGGG 60.851 60.000 0.00 0.00 0.00 3.95
7493 9072 1.230182 GGGAAGGGAAGGGAAGGGA 60.230 63.158 0.00 0.00 0.00 4.20
7494 9073 0.849540 GGGAAGGGAAGGGAAGGGAA 60.850 60.000 0.00 0.00 0.00 3.97
7496 9075 0.626382 GAAGGGAAGGGAAGGGAAGG 59.374 60.000 0.00 0.00 0.00 3.46
7497 9076 0.103337 AAGGGAAGGGAAGGGAAGGT 60.103 55.000 0.00 0.00 0.00 3.50
7498 9077 0.103337 AGGGAAGGGAAGGGAAGGTT 60.103 55.000 0.00 0.00 0.00 3.50
7500 9079 0.039764 GGAAGGGAAGGGAAGGTTGG 59.960 60.000 0.00 0.00 0.00 3.77
7501 9080 0.778083 GAAGGGAAGGGAAGGTTGGT 59.222 55.000 0.00 0.00 0.00 3.67
7502 9081 0.778083 AAGGGAAGGGAAGGTTGGTC 59.222 55.000 0.00 0.00 0.00 4.02
7507 9096 1.057851 AAGGGAAGGTTGGTCGGTCA 61.058 55.000 0.00 0.00 0.00 4.02
7526 9115 2.342648 GTCCGGTCGGCAGAAAGT 59.657 61.111 0.00 0.00 34.68 2.66
7527 9116 1.737008 GTCCGGTCGGCAGAAAGTC 60.737 63.158 0.00 0.00 34.68 3.01
7528 9117 2.434359 CCGGTCGGCAGAAAGTCC 60.434 66.667 0.00 0.00 0.00 3.85
7558 9148 3.983344 GCACACGAGAAAGCAAATCAAAT 59.017 39.130 0.00 0.00 0.00 2.32
7559 9149 4.089065 GCACACGAGAAAGCAAATCAAATC 59.911 41.667 0.00 0.00 0.00 2.17
7560 9150 5.214417 CACACGAGAAAGCAAATCAAATCA 58.786 37.500 0.00 0.00 0.00 2.57
7561 9151 5.686841 CACACGAGAAAGCAAATCAAATCAA 59.313 36.000 0.00 0.00 0.00 2.57
7562 9152 6.198778 CACACGAGAAAGCAAATCAAATCAAA 59.801 34.615 0.00 0.00 0.00 2.69
7563 9153 6.198966 ACACGAGAAAGCAAATCAAATCAAAC 59.801 34.615 0.00 0.00 0.00 2.93
7564 9154 5.399301 ACGAGAAAGCAAATCAAATCAAACG 59.601 36.000 0.00 0.00 0.00 3.60
7565 9155 5.580911 AGAAAGCAAATCAAATCAAACGC 57.419 34.783 0.00 0.00 0.00 4.84
7566 9156 5.049167 AGAAAGCAAATCAAATCAAACGCA 58.951 33.333 0.00 0.00 0.00 5.24
7567 9157 5.697633 AGAAAGCAAATCAAATCAAACGCAT 59.302 32.000 0.00 0.00 0.00 4.73
7568 9158 5.927954 AAGCAAATCAAATCAAACGCATT 57.072 30.435 0.00 0.00 0.00 3.56
7569 9159 5.927954 AGCAAATCAAATCAAACGCATTT 57.072 30.435 0.00 0.00 0.00 2.32
7570 9160 5.681880 AGCAAATCAAATCAAACGCATTTG 58.318 33.333 0.00 0.00 45.67 2.32
7571 9161 4.318854 GCAAATCAAATCAAACGCATTTGC 59.681 37.500 10.45 10.45 45.07 3.68
7572 9162 5.681880 CAAATCAAATCAAACGCATTTGCT 58.318 33.333 0.00 0.00 44.22 3.91
7573 9163 6.618166 GCAAATCAAATCAAACGCATTTGCTA 60.618 34.615 16.26 0.00 46.53 3.49
7574 9164 7.457868 CAAATCAAATCAAACGCATTTGCTAT 58.542 30.769 0.00 0.00 44.22 2.97
7575 9165 6.817270 ATCAAATCAAACGCATTTGCTATC 57.183 33.333 0.00 0.00 44.22 2.08
7576 9166 5.101628 TCAAATCAAACGCATTTGCTATCC 58.898 37.500 0.00 0.00 44.22 2.59
7577 9167 4.717233 AATCAAACGCATTTGCTATCCA 57.283 36.364 0.00 0.00 44.22 3.41
7578 9168 3.763097 TCAAACGCATTTGCTATCCAG 57.237 42.857 0.00 0.00 44.22 3.86
7579 9169 2.423185 TCAAACGCATTTGCTATCCAGG 59.577 45.455 0.00 0.00 44.22 4.45
7580 9170 2.418368 AACGCATTTGCTATCCAGGA 57.582 45.000 0.00 0.00 39.32 3.86
7581 9171 1.959042 ACGCATTTGCTATCCAGGAG 58.041 50.000 0.00 0.00 39.32 3.69
7582 9172 1.486310 ACGCATTTGCTATCCAGGAGA 59.514 47.619 0.00 0.00 39.32 3.71
7583 9173 2.105477 ACGCATTTGCTATCCAGGAGAT 59.895 45.455 0.00 0.00 39.32 2.75
7584 9174 3.324846 ACGCATTTGCTATCCAGGAGATA 59.675 43.478 0.00 0.00 39.32 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.818296 GGACGCTATGTGAGACCAGT 59.182 55.000 0.00 0.00 31.65 4.00
27 28 0.248661 CGGACGCTATGTGAGACCAG 60.249 60.000 0.00 0.00 31.65 4.00
43 44 5.104693 TGCAATTTACTATTTCTCCTCCGGA 60.105 40.000 2.93 2.93 0.00 5.14
45 46 6.483307 TCATGCAATTTACTATTTCTCCTCCG 59.517 38.462 0.00 0.00 0.00 4.63
63 64 3.058085 CACACTGCTGTTACATCATGCAA 60.058 43.478 0.00 0.00 33.07 4.08
64 65 2.485038 CACACTGCTGTTACATCATGCA 59.515 45.455 0.00 0.00 0.00 3.96
68 69 2.252976 TGCACACTGCTGTTACATCA 57.747 45.000 0.00 0.00 45.31 3.07
78 79 1.635663 GGTGGTCGTATGCACACTGC 61.636 60.000 0.00 0.00 45.29 4.40
90 91 1.806542 CTTCCAATGTTCTGGTGGTCG 59.193 52.381 0.00 0.00 37.74 4.79
118 119 2.742348 TGAGCTTTACCGATCCCAGTA 58.258 47.619 0.00 0.00 0.00 2.74
120 121 2.691409 TTGAGCTTTACCGATCCCAG 57.309 50.000 0.00 0.00 0.00 4.45
121 122 3.709653 AGTATTGAGCTTTACCGATCCCA 59.290 43.478 0.00 0.00 0.00 4.37
122 123 4.058817 CAGTATTGAGCTTTACCGATCCC 58.941 47.826 0.00 0.00 0.00 3.85
134 135 4.953667 TCCATGAGACATCAGTATTGAGC 58.046 43.478 0.00 0.00 39.29 4.26
143 144 3.036819 CTCCTCCTTCCATGAGACATCA 58.963 50.000 0.00 0.00 40.50 3.07
145 146 2.022625 TCCTCCTCCTTCCATGAGACAT 60.023 50.000 0.00 0.00 31.26 3.06
148 149 2.248423 TCATCCTCCTCCTTCCATGAGA 59.752 50.000 0.00 0.00 31.26 3.27
162 163 0.107945 GCTCCACCTGTGTCATCCTC 60.108 60.000 0.00 0.00 0.00 3.71
169 170 2.217038 ATGTCGGCTCCACCTGTGT 61.217 57.895 0.00 0.00 35.61 3.72
184 185 1.746787 TGTGGTCGCGTAGTATCATGT 59.253 47.619 5.77 0.00 0.00 3.21
205 206 0.527113 CTGCAAAATGATGGCACCGA 59.473 50.000 0.00 0.00 33.34 4.69
213 214 4.461431 TGAAGAGACATGCTGCAAAATGAT 59.539 37.500 6.36 0.00 0.00 2.45
227 229 1.409064 ACAACGCTGAGTGAAGAGACA 59.591 47.619 0.00 0.00 0.00 3.41
231 233 1.215014 CGCACAACGCTGAGTGAAGA 61.215 55.000 0.00 0.00 37.97 2.87
239 241 3.639008 TGCACTCGCACAACGCTG 61.639 61.111 0.00 0.00 45.36 5.18
277 279 2.829003 CTCCCTCCGTGAGCGCTA 60.829 66.667 11.50 0.00 36.67 4.26
331 333 3.096852 ACCACACAATCCGTCTCTATGA 58.903 45.455 0.00 0.00 0.00 2.15
345 347 2.828095 GTGCACTGCCACCACACA 60.828 61.111 10.32 0.00 0.00 3.72
352 354 3.725459 CATTCGCGTGCACTGCCA 61.725 61.111 21.97 11.31 0.00 4.92
354 356 1.297158 GATCATTCGCGTGCACTGC 60.297 57.895 16.19 18.06 0.00 4.40
356 358 2.167219 CCGATCATTCGCGTGCACT 61.167 57.895 16.19 0.00 44.12 4.40
358 360 2.125713 ACCGATCATTCGCGTGCA 60.126 55.556 5.77 0.00 44.12 4.57
360 362 1.631072 GTCACCGATCATTCGCGTG 59.369 57.895 5.77 0.00 44.12 5.34
361 363 1.518572 GGTCACCGATCATTCGCGT 60.519 57.895 5.77 0.00 44.12 6.01
374 376 4.218852 GTGGTCTATCTATAGCAGGGTCAC 59.781 50.000 0.00 0.00 0.00 3.67
379 381 2.820197 TGCGTGGTCTATCTATAGCAGG 59.180 50.000 0.00 0.00 0.00 4.85
392 394 0.933097 CATAGCTGTCATGCGTGGTC 59.067 55.000 5.98 0.68 38.13 4.02
398 400 0.942962 GCTCACCATAGCTGTCATGC 59.057 55.000 0.00 0.00 39.50 4.06
403 405 0.826715 ATGTCGCTCACCATAGCTGT 59.173 50.000 0.00 0.00 40.49 4.40
419 421 7.278461 AGTGCGAAGTGTAGATATCTAATGT 57.722 36.000 14.09 0.62 0.00 2.71
431 433 1.080772 CTGCCGAGTGCGAAGTGTA 60.081 57.895 0.00 0.00 45.60 2.90
437 439 3.995219 CTCATGCTGCCGAGTGCGA 62.995 63.158 7.75 0.00 45.60 5.10
454 456 4.547859 GCATGGCGATCCTTGTCT 57.452 55.556 0.00 0.00 39.14 3.41
507 509 0.676466 TTTGCGAGCGATTGACCCAT 60.676 50.000 0.00 0.00 0.00 4.00
512 514 1.660607 GATGTCTTTGCGAGCGATTGA 59.339 47.619 0.00 0.00 0.00 2.57
514 516 1.725641 TGATGTCTTTGCGAGCGATT 58.274 45.000 0.00 0.00 0.00 3.34
537 539 4.657504 AGTAGGGACACATCATGATCACAT 59.342 41.667 4.86 0.00 37.19 3.21
542 544 5.698741 TTTCAGTAGGGACACATCATGAT 57.301 39.130 1.18 1.18 0.00 2.45
546 548 5.497464 TCAATTTCAGTAGGGACACATCA 57.503 39.130 0.00 0.00 0.00 3.07
565 567 8.681486 ACAATCATGCTTACATATAGCTTCAA 57.319 30.769 0.00 0.00 39.38 2.69
600 602 7.466050 CGAATAAGAGTCTTCCATTGCTTAACC 60.466 40.741 9.12 0.00 0.00 2.85
639 641 2.372172 AGGTCTCTTTTGTACCAGGTGG 59.628 50.000 0.76 0.00 42.17 4.61
641 643 3.314693 TCAGGTCTCTTTTGTACCAGGT 58.685 45.455 0.00 0.00 35.64 4.00
645 695 6.231211 TGAGATTTCAGGTCTCTTTTGTACC 58.769 40.000 4.94 0.00 42.04 3.34
657 707 4.840716 AAGCTCTGATGAGATTTCAGGT 57.159 40.909 0.00 0.00 45.42 4.00
670 720 5.413833 GGATGAAATTGAGTGAAAGCTCTGA 59.586 40.000 0.00 0.00 36.51 3.27
673 723 5.048504 TGTGGATGAAATTGAGTGAAAGCTC 60.049 40.000 0.00 0.00 36.12 4.09
679 729 5.323581 TCCATTGTGGATGAAATTGAGTGA 58.676 37.500 0.00 0.00 42.67 3.41
692 742 7.614974 TAATCAGTGATTTTGATCCATTGTGGA 59.385 33.333 22.90 0.48 40.86 4.02
708 758 4.366267 AGGAGTGTCCCTTAATCAGTGAT 58.634 43.478 0.00 0.00 37.19 3.06
722 772 2.495084 GTGGTCTTTGGAAGGAGTGTC 58.505 52.381 0.00 0.00 0.00 3.67
723 773 1.143073 GGTGGTCTTTGGAAGGAGTGT 59.857 52.381 0.00 0.00 0.00 3.55
725 775 0.771755 GGGTGGTCTTTGGAAGGAGT 59.228 55.000 0.00 0.00 0.00 3.85
737 787 1.003233 CCTAAGAAGGTGTGGGTGGTC 59.997 57.143 0.00 0.00 38.19 4.02
738 788 1.064825 CCTAAGAAGGTGTGGGTGGT 58.935 55.000 0.00 0.00 38.19 4.16
739 789 3.957288 CCTAAGAAGGTGTGGGTGG 57.043 57.895 0.00 0.00 38.19 4.61
813 863 6.302313 CACGGTCTAAAAGATAAAGCGTTTTG 59.698 38.462 7.57 0.00 41.50 2.44
832 882 2.273370 TGAGATTTAGACGCACGGTC 57.727 50.000 0.00 0.00 46.45 4.79
836 886 2.735134 ACGGTTTGAGATTTAGACGCAC 59.265 45.455 0.00 0.00 0.00 5.34
842 892 5.144359 CGGTGAAAACGGTTTGAGATTTAG 58.856 41.667 1.45 0.00 0.00 1.85
843 893 4.575645 ACGGTGAAAACGGTTTGAGATTTA 59.424 37.500 1.45 0.00 35.23 1.40
851 901 1.461559 TCCAACGGTGAAAACGGTTT 58.538 45.000 0.00 0.00 32.10 3.27
868 918 3.574396 TCATCCGTTCACAGGATCTATCC 59.426 47.826 0.35 0.35 46.04 2.59
869 919 4.855715 TCATCCGTTCACAGGATCTATC 57.144 45.455 0.00 0.00 46.04 2.08
870 920 5.512060 CCAATCATCCGTTCACAGGATCTAT 60.512 44.000 0.00 0.00 46.04 1.98
871 921 4.202253 CCAATCATCCGTTCACAGGATCTA 60.202 45.833 0.00 0.00 46.04 1.98
872 922 3.432749 CCAATCATCCGTTCACAGGATCT 60.433 47.826 0.00 0.00 46.04 2.75
873 923 2.874701 CCAATCATCCGTTCACAGGATC 59.125 50.000 0.00 0.00 46.04 3.36
878 928 3.625649 TGATCCAATCATCCGTTCACA 57.374 42.857 0.00 0.00 33.59 3.58
879 929 4.191544 TCTTGATCCAATCATCCGTTCAC 58.808 43.478 0.00 0.00 39.39 3.18
885 935 5.011431 GGGGAATTTCTTGATCCAATCATCC 59.989 44.000 0.00 0.00 39.39 3.51
943 993 1.300481 GTTTATGGGCTCGGCTTCTC 58.700 55.000 0.00 0.00 0.00 2.87
1064 1127 3.810188 GTTAGGGGGCAGGGGAGC 61.810 72.222 0.00 0.00 0.00 4.70
1066 1129 4.771745 GGGTTAGGGGGCAGGGGA 62.772 72.222 0.00 0.00 0.00 4.81
1068 1131 1.770518 CTAGGGTTAGGGGGCAGGG 60.771 68.421 0.00 0.00 0.00 4.45
1069 1132 2.452937 GCTAGGGTTAGGGGGCAGG 61.453 68.421 0.00 0.00 0.00 4.85
1156 1222 2.835895 GCGGAGGAGGAGGAGGAC 60.836 72.222 0.00 0.00 0.00 3.85
1157 1223 4.144727 GGCGGAGGAGGAGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
1228 1460 2.130426 GCTGATGAGGCTCCCGAGA 61.130 63.158 12.86 0.00 0.00 4.04
1340 1572 2.041405 GGAGGGGAGGAGGGAGTG 60.041 72.222 0.00 0.00 0.00 3.51
1341 1573 3.369388 GGGAGGGGAGGAGGGAGT 61.369 72.222 0.00 0.00 0.00 3.85
1342 1574 4.179599 GGGGAGGGGAGGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1406 1638 2.885644 CGAACGCATCTGGGGACG 60.886 66.667 0.00 1.09 0.00 4.79
1407 1639 3.195698 GCGAACGCATCTGGGGAC 61.196 66.667 14.26 0.00 41.49 4.46
1410 1642 2.978452 CTAGGGCGAACGCATCTGGG 62.978 65.000 20.16 10.34 44.11 4.45
1420 1652 2.102588 GCAAATCTAGGTCTAGGGCGAA 59.897 50.000 5.31 0.00 34.06 4.70
1424 1656 2.297597 CGGAGCAAATCTAGGTCTAGGG 59.702 54.545 5.31 0.00 34.06 3.53
1543 2001 3.726517 CGCCCGAACTGCTGGTTG 61.727 66.667 0.73 0.00 38.41 3.77
1579 2037 0.802222 CGCCCATACTCGACACACTG 60.802 60.000 0.00 0.00 0.00 3.66
1630 2088 2.107141 GCGGCGAATCCTAGCAGT 59.893 61.111 12.98 0.00 34.54 4.40
1631 2089 2.106938 TGCGGCGAATCCTAGCAG 59.893 61.111 12.98 0.00 33.57 4.24
1632 2090 2.202878 GTGCGGCGAATCCTAGCA 60.203 61.111 12.98 0.00 35.27 3.49
1648 2107 3.118454 CAAGATGCGGCGGTTCGT 61.118 61.111 9.78 0.00 0.00 3.85
1675 2172 7.483691 CCGTTAACTGGCTGTTCAAAATTATAC 59.516 37.037 13.29 0.04 39.89 1.47
1705 2202 1.896660 GGCACAAAAGGCGGTGAGA 60.897 57.895 0.00 0.00 37.18 3.27
1806 2303 3.485394 TGCCAGTTGAGAATTACAGCAA 58.515 40.909 0.00 0.00 0.00 3.91
2033 2830 1.269958 CATGAGGGTCTGTCTCCACA 58.730 55.000 0.00 0.00 0.00 4.17
2038 2835 7.682787 AATAAGATTACATGAGGGTCTGTCT 57.317 36.000 0.00 0.00 0.00 3.41
2039 2836 9.429359 CATAATAAGATTACATGAGGGTCTGTC 57.571 37.037 0.00 0.00 0.00 3.51
2040 2837 8.938883 ACATAATAAGATTACATGAGGGTCTGT 58.061 33.333 0.00 0.00 0.00 3.41
2081 2878 3.374058 GTGCACGCATTTAGTACAGGAAT 59.626 43.478 0.00 0.00 0.00 3.01
2082 2879 2.739913 GTGCACGCATTTAGTACAGGAA 59.260 45.455 0.00 0.00 0.00 3.36
2083 2880 2.028476 AGTGCACGCATTTAGTACAGGA 60.028 45.455 12.01 0.00 0.00 3.86
2084 2881 2.094258 CAGTGCACGCATTTAGTACAGG 59.906 50.000 12.01 0.00 0.00 4.00
2085 2882 2.993220 TCAGTGCACGCATTTAGTACAG 59.007 45.455 12.01 0.00 0.00 2.74
2086 2883 3.033368 TCAGTGCACGCATTTAGTACA 57.967 42.857 12.01 0.00 0.00 2.90
2087 2884 4.334443 CATTCAGTGCACGCATTTAGTAC 58.666 43.478 12.01 0.00 0.00 2.73
2109 2908 3.414700 CAGCAACGCGACAGGACC 61.415 66.667 15.93 0.00 0.00 4.46
2156 2959 2.029290 AGTAACGTCCTACCAAGCTGTG 60.029 50.000 0.00 0.00 0.00 3.66
2171 2974 5.612709 GCAGACAGACAAGCTAAAAGTAACG 60.613 44.000 0.00 0.00 0.00 3.18
2200 3003 2.046988 CATGGCTGCTCGACACCA 60.047 61.111 0.00 9.69 35.05 4.17
2218 3021 3.189702 TGTAACGATGAGATGACGTCACA 59.810 43.478 22.71 15.21 39.31 3.58
2292 3095 6.259829 AGTTTTGCGATTTAAACAAAAGGCAT 59.740 30.769 12.80 1.97 42.22 4.40
2316 3127 2.404083 ACAAACGCTGTGTTGGGAG 58.596 52.632 12.72 4.47 40.84 4.30
2335 3146 6.582437 AAATTCGAAACACAACATGGTTTC 57.418 33.333 0.00 12.62 45.79 2.78
2346 3157 7.066525 TCCTACCATATCCAAAATTCGAAACAC 59.933 37.037 0.00 0.00 0.00 3.32
2419 3230 9.531942 CTAGCCATCATAGTATCATCTCATTTC 57.468 37.037 0.00 0.00 0.00 2.17
2456 3267 9.878599 GAATTAATACATTACCAAGATGGAACG 57.121 33.333 2.85 0.00 40.96 3.95
2474 3285 9.692749 CCTTCTCGCTACATAACTGAATTAATA 57.307 33.333 0.00 0.00 0.00 0.98
2475 3286 8.204836 ACCTTCTCGCTACATAACTGAATTAAT 58.795 33.333 0.00 0.00 0.00 1.40
2476 3287 7.553334 ACCTTCTCGCTACATAACTGAATTAA 58.447 34.615 0.00 0.00 0.00 1.40
2477 3288 7.108841 ACCTTCTCGCTACATAACTGAATTA 57.891 36.000 0.00 0.00 0.00 1.40
2478 3289 5.978814 ACCTTCTCGCTACATAACTGAATT 58.021 37.500 0.00 0.00 0.00 2.17
2479 3290 5.599999 ACCTTCTCGCTACATAACTGAAT 57.400 39.130 0.00 0.00 0.00 2.57
2480 3291 5.401531 AACCTTCTCGCTACATAACTGAA 57.598 39.130 0.00 0.00 0.00 3.02
2481 3292 5.047590 TGAAACCTTCTCGCTACATAACTGA 60.048 40.000 0.00 0.00 0.00 3.41
2482 3293 5.168569 TGAAACCTTCTCGCTACATAACTG 58.831 41.667 0.00 0.00 0.00 3.16
2483 3294 5.401531 TGAAACCTTCTCGCTACATAACT 57.598 39.130 0.00 0.00 0.00 2.24
2484 3295 6.535508 AGAATGAAACCTTCTCGCTACATAAC 59.464 38.462 0.00 0.00 0.00 1.89
2485 3296 6.640518 AGAATGAAACCTTCTCGCTACATAA 58.359 36.000 0.00 0.00 0.00 1.90
2486 3297 6.222038 AGAATGAAACCTTCTCGCTACATA 57.778 37.500 0.00 0.00 0.00 2.29
2487 3298 5.091261 AGAATGAAACCTTCTCGCTACAT 57.909 39.130 0.00 0.00 0.00 2.29
2488 3299 4.537135 AGAATGAAACCTTCTCGCTACA 57.463 40.909 0.00 0.00 0.00 2.74
2489 3300 5.179555 ACAAAGAATGAAACCTTCTCGCTAC 59.820 40.000 0.00 0.00 31.83 3.58
2490 3301 5.305585 ACAAAGAATGAAACCTTCTCGCTA 58.694 37.500 0.00 0.00 31.83 4.26
2491 3302 4.137543 ACAAAGAATGAAACCTTCTCGCT 58.862 39.130 0.00 0.00 31.83 4.93
2492 3303 4.489679 ACAAAGAATGAAACCTTCTCGC 57.510 40.909 0.00 0.00 31.83 5.03
2493 3304 7.584987 ACATTACAAAGAATGAAACCTTCTCG 58.415 34.615 3.27 0.00 38.83 4.04
2606 3417 2.694109 ACTCCTTAGCGAGATGTAACCC 59.306 50.000 5.06 0.00 33.83 4.11
2611 3422 7.783042 ACTAAATTAACTCCTTAGCGAGATGT 58.217 34.615 5.06 0.00 33.83 3.06
2619 3430 7.594386 GCCGTAGCTACTAAATTAACTCCTTAG 59.406 40.741 21.20 0.00 35.50 2.18
2623 3434 5.594926 TGCCGTAGCTACTAAATTAACTCC 58.405 41.667 21.20 0.00 40.80 3.85
2807 3618 2.075426 GAGCTGGTTGTGGTTGTGGC 62.075 60.000 0.00 0.00 0.00 5.01
2892 3703 1.370609 CATCAGCAGAGTGGCTCTTG 58.629 55.000 0.00 0.00 43.68 3.02
3218 4029 3.378512 AGTCTGTGGAGCTGATAATCCA 58.621 45.455 0.00 0.00 43.34 3.41
3257 4068 4.218312 GCCCAGATGGTAAAGATGGATTT 58.782 43.478 0.00 0.00 36.04 2.17
3311 4122 1.002011 GGCACTTGAGGAAGGACCC 60.002 63.158 0.00 0.00 40.05 4.46
3497 4308 9.646427 CTACTAACAAGAGAATTTAAGCTCTGT 57.354 33.333 0.00 0.00 40.43 3.41
3980 4814 4.465632 AAAGAACAAGGGGTGAAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
3981 4815 4.081365 GGAAAAGAACAAGGGGTGAAAACA 60.081 41.667 0.00 0.00 0.00 2.83
4009 4845 5.073428 GGTCTCCAGAAAAGGAAAGTCAAT 58.927 41.667 0.00 0.00 37.20 2.57
4270 5108 6.218746 CGGTTAACTAGACACTAAACTGGTT 58.781 40.000 5.42 0.00 40.05 3.67
4287 5125 2.876550 ACAGAGTTTTGAGGCGGTTAAC 59.123 45.455 0.00 0.00 0.00 2.01
4371 5209 7.763172 AGAAACAAGATGATTCGATGAGTAC 57.237 36.000 0.00 0.00 34.80 2.73
4375 5213 8.124823 GCATTAAGAAACAAGATGATTCGATGA 58.875 33.333 13.16 0.00 34.80 2.92
4413 5251 1.963515 AGGTGTAAGCAAAAGCAAGGG 59.036 47.619 0.00 0.00 36.26 3.95
4417 5255 5.337578 AAGAAAAGGTGTAAGCAAAAGCA 57.662 34.783 0.00 0.00 36.26 3.91
4512 5351 9.545105 CAGAAAGATAGACAAGATGCTAAGATT 57.455 33.333 0.00 0.00 0.00 2.40
4513 5352 8.703743 ACAGAAAGATAGACAAGATGCTAAGAT 58.296 33.333 0.00 0.00 0.00 2.40
4516 5355 6.536582 GCACAGAAAGATAGACAAGATGCTAA 59.463 38.462 0.00 0.00 0.00 3.09
4556 5395 6.006275 AGTGAGGCACAACATAATAAGGAT 57.994 37.500 0.00 0.00 36.74 3.24
4572 5411 4.503741 TGTGCTGAAAATAAAGTGAGGC 57.496 40.909 0.00 0.00 0.00 4.70
4736 5577 3.119245 GCACCGGAAGTAGTACAGATGAA 60.119 47.826 9.46 0.00 0.00 2.57
4751 5592 0.316841 GAAAAATTGCAGGCACCGGA 59.683 50.000 9.46 0.00 0.00 5.14
4846 5687 9.023962 ACTTTTGGCATAGATAAAATGAAGACA 57.976 29.630 4.38 0.00 0.00 3.41
4937 5778 6.635030 TGAGATATAGAAGTGCGTACATGT 57.365 37.500 6.38 2.69 0.00 3.21
4995 5836 8.044060 TGAATTGATGCTAAAAGGTAACAGAG 57.956 34.615 0.00 0.00 41.41 3.35
5129 6022 8.495949 CATTATATCGTACATGTCACTTTTCCC 58.504 37.037 0.00 0.00 0.00 3.97
5130 6023 9.042008 ACATTATATCGTACATGTCACTTTTCC 57.958 33.333 0.00 0.00 0.00 3.13
5146 6043 9.090103 ACCCCCTATCATATGTACATTATATCG 57.910 37.037 14.77 1.82 0.00 2.92
5163 6060 0.743345 GACACAACGCACCCCCTATC 60.743 60.000 0.00 0.00 0.00 2.08
5165 6062 1.839747 AGACACAACGCACCCCCTA 60.840 57.895 0.00 0.00 0.00 3.53
5337 6236 4.460731 AGGGCTTCAAGTTTCAGCTATTTC 59.539 41.667 0.00 0.00 33.76 2.17
5484 6383 1.879380 TCAGTCCAATCAAGCCAAACG 59.121 47.619 0.00 0.00 0.00 3.60
5497 6396 2.238084 AGCATGAGTACCTCAGTCCA 57.762 50.000 0.00 0.00 44.08 4.02
5518 6417 2.213499 ACTGCACGACAAGAAAAGAGG 58.787 47.619 0.00 0.00 0.00 3.69
5757 6656 5.069648 TGAATACACAAACCTTTGAATGCCA 59.930 36.000 4.77 0.00 40.55 4.92
5814 6714 0.108662 TGACGTAGACAGGCTGCATG 60.109 55.000 15.89 13.33 0.00 4.06
5844 6744 2.027192 TCCACCAGAAAGGGAATCGAAG 60.027 50.000 0.00 0.00 43.89 3.79
5862 6762 1.544537 CCACCTCGTCCAAATGTTCCA 60.545 52.381 0.00 0.00 0.00 3.53
5886 6786 1.000607 GAAAACCTTGGCCTTCCGTTC 60.001 52.381 3.32 0.00 34.14 3.95
5980 6882 5.063944 GCACAAAGACAATCATCAGATACGT 59.936 40.000 0.00 0.00 33.08 3.57
5984 6886 5.123502 GTCTGCACAAAGACAATCATCAGAT 59.876 40.000 0.00 0.00 44.98 2.90
6015 6918 1.429021 GCGATGCCTTGCGAAATCA 59.571 52.632 0.00 0.00 0.00 2.57
6204 7119 4.382040 CCATCATAGTAGTTATCCTGCCCG 60.382 50.000 0.00 0.00 0.00 6.13
6224 7139 4.790962 CTCTGCCACTGCCGCCAT 62.791 66.667 0.00 0.00 36.33 4.40
6333 7256 2.337879 TTATGACGGATGGCCAGCCC 62.338 60.000 33.71 23.73 32.05 5.19
6334 7257 0.250901 ATTATGACGGATGGCCAGCC 60.251 55.000 30.82 30.82 0.00 4.85
6335 7258 2.076863 GTATTATGACGGATGGCCAGC 58.923 52.381 14.08 14.08 0.00 4.85
6336 7259 3.067106 GTGTATTATGACGGATGGCCAG 58.933 50.000 13.05 0.00 0.00 4.85
6337 7260 2.224426 GGTGTATTATGACGGATGGCCA 60.224 50.000 8.56 8.56 0.00 5.36
6372 7295 1.160137 GCTGTAGGTGCCAAGTGAAG 58.840 55.000 0.00 0.00 0.00 3.02
6381 7304 2.031120 AGAGAGATGAGCTGTAGGTGC 58.969 52.381 0.00 0.00 0.00 5.01
6382 7305 3.737663 GCAAGAGAGATGAGCTGTAGGTG 60.738 52.174 0.00 0.00 0.00 4.00
6447 7370 3.013327 GTGGGGTGGGTAGGGTCC 61.013 72.222 0.00 0.00 0.00 4.46
6448 7371 3.013327 GGTGGGGTGGGTAGGGTC 61.013 72.222 0.00 0.00 0.00 4.46
6541 7489 0.244994 GGCATGAGATAGATCGGCGT 59.755 55.000 6.85 0.00 0.00 5.68
6601 7549 7.484975 TGTATTGTAAAACAAAACCAGACAGG 58.515 34.615 0.00 0.00 41.96 4.00
6672 7623 5.728351 TCTGTTTACAACGGTTTCTTCTG 57.272 39.130 0.00 0.00 38.89 3.02
6673 7624 6.766467 AGATTCTGTTTACAACGGTTTCTTCT 59.234 34.615 0.00 0.00 38.89 2.85
6674 7625 6.956047 AGATTCTGTTTACAACGGTTTCTTC 58.044 36.000 0.00 0.00 38.89 2.87
6675 7626 6.937436 AGATTCTGTTTACAACGGTTTCTT 57.063 33.333 0.00 0.00 38.89 2.52
6676 7627 7.439381 TCTAGATTCTGTTTACAACGGTTTCT 58.561 34.615 0.00 2.94 38.89 2.52
6798 7994 0.535102 AGCACCAGGTGTCCTTTTCG 60.535 55.000 21.26 0.00 35.75 3.46
6838 8153 7.281999 CCCAACAAACCAGACACAATTATTTTT 59.718 33.333 0.00 0.00 0.00 1.94
6843 8160 3.639094 CCCCAACAAACCAGACACAATTA 59.361 43.478 0.00 0.00 0.00 1.40
6860 8178 3.010808 ACCGACTTTTTCCATATCCCCAA 59.989 43.478 0.00 0.00 0.00 4.12
6873 8191 3.819877 AAGCGCCGGACCGACTTTT 62.820 57.895 17.49 1.52 0.00 2.27
6874 8192 3.819877 AAAGCGCCGGACCGACTTT 62.820 57.895 17.49 17.90 33.27 2.66
6881 8209 0.039527 AAACAATGAAAGCGCCGGAC 60.040 50.000 5.05 0.00 0.00 4.79
6908 8236 6.015434 ACAAAGGCCAAAAAGATACTAACTGG 60.015 38.462 5.01 0.00 0.00 4.00
6944 8462 8.851145 TGGTAAAGTGCAATCTAGACTATAGAG 58.149 37.037 6.78 0.00 0.00 2.43
6992 8510 9.232473 ACTCCCTCTGTAAAATTGTAATTCTTC 57.768 33.333 0.00 0.00 0.00 2.87
7026 8550 3.192844 TCCTGTTTCGCGATATATCCCTC 59.807 47.826 10.88 0.00 0.00 4.30
7052 8576 9.482627 CAAACTCTCTGTTTAGATCACTACTTT 57.517 33.333 0.00 0.00 46.11 2.66
7053 8577 8.861086 TCAAACTCTCTGTTTAGATCACTACTT 58.139 33.333 0.00 0.00 46.11 2.24
7118 8661 0.536460 GAGGAAACGCCACCAAAGGA 60.536 55.000 0.00 0.00 40.02 3.36
7131 8674 3.842007 TGTTTTACCAGGACGAGGAAA 57.158 42.857 0.00 0.00 0.00 3.13
7134 8677 3.328382 TGATGTTTTACCAGGACGAGG 57.672 47.619 0.00 0.00 0.00 4.63
7149 8692 4.460382 GGACACAAACAAGGATGATGATGT 59.540 41.667 0.00 0.00 0.00 3.06
7184 8727 6.899089 TGCATTTATCTCCTCCTGTTCAATA 58.101 36.000 0.00 0.00 0.00 1.90
7191 8734 5.541845 TCGTATTGCATTTATCTCCTCCTG 58.458 41.667 0.00 0.00 0.00 3.86
7220 8763 1.600164 CCTGCCATCAACAAACACACG 60.600 52.381 0.00 0.00 0.00 4.49
7260 8808 1.496060 ATCTACCCTCGCCATCAACA 58.504 50.000 0.00 0.00 0.00 3.33
7262 8810 3.056821 CGATTATCTACCCTCGCCATCAA 60.057 47.826 0.00 0.00 0.00 2.57
7263 8811 2.492088 CGATTATCTACCCTCGCCATCA 59.508 50.000 0.00 0.00 0.00 3.07
7264 8812 2.159226 CCGATTATCTACCCTCGCCATC 60.159 54.545 0.00 0.00 0.00 3.51
7265 8813 1.825474 CCGATTATCTACCCTCGCCAT 59.175 52.381 0.00 0.00 0.00 4.40
7293 8852 0.454196 AACCAAACAACGAAAGCGCT 59.546 45.000 2.64 2.64 42.48 5.92
7302 8861 7.036829 ACTACCAATACAACAAACCAAACAAC 58.963 34.615 0.00 0.00 0.00 3.32
7337 8900 1.728425 AGTATGCATGCATGATACGCG 59.272 47.619 37.43 3.53 37.82 6.01
7374 8941 2.630580 AGATGCGGTCCTATCTTCTTCC 59.369 50.000 0.85 0.00 29.64 3.46
7397 8964 0.592247 CAGCCTCACAACACGCAAAC 60.592 55.000 0.00 0.00 0.00 2.93
7405 8972 0.324943 TTCTAGGCCAGCCTCACAAC 59.675 55.000 16.01 0.00 44.43 3.32
7409 8976 1.288037 TCTAGTTCTAGGCCAGCCTCA 59.712 52.381 16.01 0.00 44.43 3.86
7452 9019 4.053469 TCCCTTTAAAACAAGCACAAGC 57.947 40.909 0.00 0.00 42.56 4.01
7472 9051 0.626382 CCTTCCCTTCCCTTCCCTTC 59.374 60.000 0.00 0.00 0.00 3.46
7492 9071 0.320508 GACCTGACCGACCAACCTTC 60.321 60.000 0.00 0.00 0.00 3.46
7493 9072 1.752833 GACCTGACCGACCAACCTT 59.247 57.895 0.00 0.00 0.00 3.50
7494 9073 2.214920 GGACCTGACCGACCAACCT 61.215 63.158 0.00 0.00 0.00 3.50
7507 9096 2.920912 TTTCTGCCGACCGGACCT 60.921 61.111 9.46 0.00 37.50 3.85
7526 9115 1.176619 TCTCGTGTGCTTCTTCCGGA 61.177 55.000 0.00 0.00 0.00 5.14
7527 9116 0.319555 TTCTCGTGTGCTTCTTCCGG 60.320 55.000 0.00 0.00 0.00 5.14
7528 9117 1.457303 CTTTCTCGTGTGCTTCTTCCG 59.543 52.381 0.00 0.00 0.00 4.30
7558 9148 2.423185 CCTGGATAGCAAATGCGTTTGA 59.577 45.455 30.83 14.36 46.03 2.69
7559 9149 7.676640 TATCTCCTGGATAGCAAATGCGTTTG 61.677 42.308 24.17 24.17 40.29 2.93
7560 9150 5.687441 TATCTCCTGGATAGCAAATGCGTTT 60.687 40.000 0.00 0.00 39.79 3.60
7561 9151 4.202357 TATCTCCTGGATAGCAAATGCGTT 60.202 41.667 0.00 0.00 39.79 4.84
7562 9152 3.324846 TATCTCCTGGATAGCAAATGCGT 59.675 43.478 0.00 0.00 39.79 5.24
7563 9153 3.930336 TATCTCCTGGATAGCAAATGCG 58.070 45.455 0.00 0.00 39.79 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.