AutoCloner

Multiple sequence alignment - TraesCS3A01G005700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G005700	chr3A	100.000	2615	0	0	1	2615	7132606	7129992	0.000000e+00	4830.0
1	TraesCS3A01G005700	chr3A	96.970	165	4	1	586	749	7141012	7141176	2.560000e-70	276.0
2	TraesCS3A01G005700	chr3A	90.286	175	17	0	1	175	304189064	304189238	2.020000e-56	230.0
3	TraesCS3A01G005700	chr3D	92.531	964	48	7	744	1688	1882673	1883631	0.000000e+00	1360.0
4	TraesCS3A01G005700	chr3D	90.616	682	33	10	1	659	606165450	606166123	0.000000e+00	876.0
5	TraesCS3A01G005700	chr3D	91.393	488	40	2	2129	2615	1884224	1884710	0.000000e+00	667.0
6	TraesCS3A01G005700	chr3D	88.662	441	34	6	1697	2131	1883673	1884103	8.290000e-145	523.0
7	TraesCS3A01G005700	chr3D	98.000	150	3	0	594	743	606164947	606164798	7.180000e-66	261.0
8	TraesCS3A01G005700	chr3D	89.894	188	18	1	1948	2135	445344222	445344408	9.350000e-60	241.0
9	TraesCS3A01G005700	chr3D	92.667	150	11	0	596	745	40810005	40810154	1.580000e-52	217.0
10	TraesCS3A01G005700	chr2B	97.453	746	16	1	1	743	795201697	795202442	0.000000e+00	1269.0
11	TraesCS3A01G005700	chr2B	96.855	159	4	1	589	746	795198816	795198658	5.550000e-67	265.0
12	TraesCS3A01G005700	chr2B	73.729	708	163	17	987	1688	447508927	447508237	3.340000e-64	255.0
13	TraesCS3A01G005700	chr3B	92.023	865	54	7	828	1688	5069419	5070272	0.000000e+00	1201.0
14	TraesCS3A01G005700	chr3B	93.358	798	49	2	892	1688	4214036	4214830	0.000000e+00	1177.0
15	TraesCS3A01G005700	chr3B	87.097	186	21	3	1951	2135	777352047	777351864	9.490000e-50	207.0
16	TraesCS3A01G005700	chr3B	88.158	152	18	0	745	896	4212605	4212756	5.750000e-42	182.0
17	TraesCS3A01G005700	chr1A	91.384	766	40	8	4	745	518753071	518752308	0.000000e+00	1026.0
18	TraesCS3A01G005700	chr1A	93.421	152	8	2	594	745	518754480	518754629	9.420000e-55	224.0
19	TraesCS3A01G005700	chr7A	84.478	670	86	12	1951	2615	215939758	215939102	0.000000e+00	645.0
20	TraesCS3A01G005700	chr7A	91.649	467	21	4	1	449	56181646	56182112	4.750000e-177	630.0
21	TraesCS3A01G005700	chr7A	88.525	488	55	1	2129	2615	589242266	589241779	8.060000e-165	590.0
22	TraesCS3A01G005700	chr7A	87.541	305	26	12	455	756	56182151	56182446	2.490000e-90	342.0
23	TraesCS3A01G005700	chr7A	98.026	152	3	0	594	745	56179919	56179768	5.550000e-67	265.0
24	TraesCS3A01G005700	chr7D	89.549	488	50	1	2129	2615	515488369	515487882	3.700000e-173	617.0
25	TraesCS3A01G005700	chr7D	89.366	489	48	3	2129	2615	232474046	232473560	1.720000e-171	612.0
26	TraesCS3A01G005700	chr7D	90.533	169	16	0	4	172	454488499	454488331	9.420000e-55	224.0
27	TraesCS3A01G005700	chr4D	89.162	489	50	3	2129	2615	432459935	432459448	8.000000e-170	606.0
28	TraesCS3A01G005700	chr4D	88.934	488	53	1	2129	2615	362409107	362408620	3.720000e-168	601.0
29	TraesCS3A01G005700	chr4D	87.568	185	19	2	1951	2135	449818022	449817842	7.330000e-51	211.0
30	TraesCS3A01G005700	chr4D	86.316	190	23	3	1948	2135	432460897	432460709	1.230000e-48	204.0
31	TraesCS3A01G005700	chr1B	88.753	489	53	2	2129	2615	94989574	94989086	4.820000e-167	597.0
32	TraesCS3A01G005700	chr1B	88.000	150	15	3	595	743	577199487	577199634	9.620000e-40	174.0
33	TraesCS3A01G005700	chr4A	88.525	488	53	3	2129	2615	35634620	35634135	2.900000e-164	588.0
34	TraesCS3A01G005700	chr5B	83.925	479	38	11	4	462	549731153	549730694	3.110000e-114	422.0
35	TraesCS3A01G005700	chr5B	90.816	294	25	2	454	745	549730669	549730376	2.440000e-105	392.0
36	TraesCS3A01G005700	chr5B	93.939	165	9	1	580	743	549736175	549736339	5.590000e-62	248.0
37	TraesCS3A01G005700	chr5B	89.143	175	19	0	1	175	290612285	290612459	4.380000e-53	219.0
38	TraesCS3A01G005700	chr5B	89.143	175	19	0	4	178	372581932	372581758	4.380000e-53	219.0
39	TraesCS3A01G005700	chr5B	88.043	184	20	2	560	743	508527783	508527602	1.580000e-52	217.0
40	TraesCS3A01G005700	chr2A	88.649	185	19	2	1951	2135	682973996	682973814	9.420000e-55	224.0
41	TraesCS3A01G005700	chr2A	83.846	130	16	3	790	914	747131556	747131685	4.570000e-23	119.0
42	TraesCS3A01G005700	chr2D	88.525	183	19	2	560	742	611495388	611495208	1.220000e-53	220.0
43	TraesCS3A01G005700	chr1D	89.266	177	18	1	1959	2135	372381735	372381910	1.220000e-53	220.0
44	TraesCS3A01G005700	chr4B	89.143	175	19	0	4	178	130919355	130919181	4.380000e-53	219.0
45	TraesCS3A01G005700	chr4B	82.468	154	23	3	595	745	640597823	640597975	5.870000e-27	132.0
46	TraesCS3A01G005700	chr4B	95.238	42	2	0	712	753	640581726	640581685	1.680000e-07	67.6
47	TraesCS3A01G005700	chr4B	95.122	41	2	0	713	753	640581647	640581607	6.040000e-07	65.8
48	TraesCS3A01G005700	chr6D	88.108	185	17	3	1951	2135	460457960	460458139	5.670000e-52	215.0
49	TraesCS3A01G005700	chr7B	86.096	187	25	1	1949	2135	546319945	546319760	1.590000e-47	200.0
50	TraesCS3A01G005700	chr6A	86.869	99	11	2	790	887	35258154	35258251	2.750000e-20	110.0
51	TraesCS3A01G005700	chr5A	85.577	104	11	3	784	884	452432278	452432176	3.560000e-19	106.0
52	TraesCS3A01G005700	chr5D	100.000	29	0	0	717	745	550436925	550436953	1.000000e-03	54.7
53	TraesCS3A01G005700	chr5D	100.000	28	0	0	717	744	550425671	550425698	5.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G005700	chr3A	7129992	7132606	2614	True	4830.0	4830	100.0000	1	2615	1	chr3A.!!$R1	2614
1	TraesCS3A01G005700	chr3D	606165450	606166123	673	False	876.0	876	90.6160	1	659	1	chr3D.!!$F3	658
2	TraesCS3A01G005700	chr3D	1882673	1884710	2037	False	850.0	1360	90.8620	744	2615	3	chr3D.!!$F4	1871
3	TraesCS3A01G005700	chr2B	795201697	795202442	745	False	1269.0	1269	97.4530	1	743	1	chr2B.!!$F1	742
4	TraesCS3A01G005700	chr2B	447508237	447508927	690	True	255.0	255	73.7290	987	1688	1	chr2B.!!$R1	701
5	TraesCS3A01G005700	chr3B	5069419	5070272	853	False	1201.0	1201	92.0230	828	1688	1	chr3B.!!$F1	860
6	TraesCS3A01G005700	chr3B	4212605	4214830	2225	False	679.5	1177	90.7580	745	1688	2	chr3B.!!$F2	943
7	TraesCS3A01G005700	chr1A	518752308	518753071	763	True	1026.0	1026	91.3840	4	745	1	chr1A.!!$R1	741
8	TraesCS3A01G005700	chr7A	215939102	215939758	656	True	645.0	645	84.4780	1951	2615	1	chr7A.!!$R2	664
9	TraesCS3A01G005700	chr7A	56181646	56182446	800	False	486.0	630	89.5950	1	756	2	chr7A.!!$F1	755
10	TraesCS3A01G005700	chr4D	432459448	432460897	1449	True	405.0	606	87.7390	1948	2615	2	chr4D.!!$R3	667
11	TraesCS3A01G005700	chr5B	549730376	549731153	777	True	407.0	422	87.3705	4	745	2	chr5B.!!$R3	741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
769	845	0.10852	AATGATACGCAACGGTCGGT	60.109	50.0	0.0	0.0	0.0	4.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2203	4408	0.318441	CTTCAGAGCACCAACCGAGA	59.682	55.0	0.0	0.0	0.0	4.04	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
192	193	1.272147	ACAATGGAAAGACCTCCCAGC	60.272	52.381	0.00	0.00	39.86	4.85
277	294	1.151450	CCAGGAAATCCATCGGGGG	59.849	63.158	1.67	0.00	38.89	5.40
678	753	8.531146	ACATTTTCAGGGTTAAAATCATACCAG	58.469	33.333	0.00	0.00	35.00	4.00
769	845	0.108520	AATGATACGCAACGGTCGGT	60.109	50.000	0.00	0.00	0.00	4.69
817	894	0.253610	TTACGGGTGGTATTGCTGGG	59.746	55.000	0.00	0.00	0.00	4.45
857	934	3.689649	AGAGGCAATTTTCATGACGTACC	59.310	43.478	0.00	0.00	0.00	3.34
957	2337	8.917088	AGAATAAATGTAGCACAATTAAGGCAT	58.083	29.630	0.00	0.00	28.53	4.40
1077	2461	3.649986	GCGAGCACGGCAACAACT	61.650	61.111	5.52	0.00	40.15	3.16
1104	2488	4.760840	GCTCTCGTCGTGCTCGCA	62.761	66.667	2.69	0.00	36.96	5.10
1316	2700	3.350833	ACACTAGGGTAATCGTCGACTT	58.649	45.455	14.70	4.56	0.00	3.01
1317	2701	3.128242	ACACTAGGGTAATCGTCGACTTG	59.872	47.826	14.70	0.00	0.00	3.16
1318	2702	2.098770	ACTAGGGTAATCGTCGACTTGC	59.901	50.000	14.70	5.56	0.00	4.01
1341	2725	2.747855	GAGGGCAAAGAGGGCACG	60.748	66.667	0.00	0.00	40.38	5.34
1361	2745	4.847444	GGAGGAGGAAGCGCTGGC	62.847	72.222	12.58	6.29	40.37	4.85
1362	2746	4.847444	GAGGAGGAAGCGCTGGCC	62.847	72.222	12.58	16.69	41.24	5.36
1470	2854	2.093216	CAAGGTCATCTTGCTCGCC	58.907	57.895	0.00	0.00	45.24	5.54
1553	2937	1.863267	GACTTGGATCGCCAGATGAG	58.137	55.000	0.00	0.00	46.91	2.90
1657	3041	9.518906	CTATGCATGTTGCTGTCAATAAATAAA	57.481	29.630	10.16	0.00	45.31	1.40
1688	3072	6.597672	GTGTCTGGACATGTTATGGTGATAAA	59.402	38.462	0.00	0.00	43.97	1.40
1689	3073	6.597672	TGTCTGGACATGTTATGGTGATAAAC	59.402	38.462	0.00	0.00	36.21	2.01
1690	3074	6.823689	GTCTGGACATGTTATGGTGATAAACT	59.176	38.462	0.00	0.00	33.60	2.66
1691	3075	6.823182	TCTGGACATGTTATGGTGATAAACTG	59.177	38.462	0.00	0.00	33.60	3.16
1692	3076	6.716284	TGGACATGTTATGGTGATAAACTGA	58.284	36.000	0.00	0.00	33.60	3.41
1694	3078	8.490311	TGGACATGTTATGGTGATAAACTGATA	58.510	33.333	0.00	0.00	33.60	2.15
1695	3079	9.337396	GGACATGTTATGGTGATAAACTGATAA	57.663	33.333	0.00	0.00	33.60	1.75
1727	3144	3.071747	ACACCTCTTCCCTCAAGTTCTTC	59.928	47.826	0.00	0.00	33.27	2.87
1729	3146	3.977326	ACCTCTTCCCTCAAGTTCTTCTT	59.023	43.478	0.00	0.00	36.75	2.52
1732	3149	5.830457	CCTCTTCCCTCAAGTTCTTCTTTTT	59.170	40.000	0.00	0.00	33.63	1.94
1741	3158	7.276953	TCAAGTTCTTCTTTTTCTTTTTGCG	57.723	32.000	0.00	0.00	33.63	4.85
1764	3181	4.285863	AGAAGATCTACTCCTGTCTTGGG	58.714	47.826	0.00	0.00	31.51	4.12
1778	3195	2.360165	GTCTTGGGCTATGAGCAATTGG	59.640	50.000	7.72	0.00	44.75	3.16
1819	3242	3.807538	GCAGCGCCCACATGACAG	61.808	66.667	2.29	0.00	0.00	3.51
1825	3248	1.577328	CGCCCACATGACAGACAACC	61.577	60.000	0.00	0.00	0.00	3.77
1834	3257	4.102524	ACATGACAGACAACCCAGTTAAGA	59.897	41.667	0.00	0.00	0.00	2.10
1837	3260	2.069273	CAGACAACCCAGTTAAGAGCG	58.931	52.381	0.00	0.00	0.00	5.03
1878	3301	3.165058	TCACAGCAACGATGACTATCC	57.835	47.619	0.00	0.00	0.00	2.59
1889	3312	4.202264	ACGATGACTATCCCATTTCTGACC	60.202	45.833	0.00	0.00	0.00	4.02
1891	3314	2.158957	TGACTATCCCATTTCTGACCGC	60.159	50.000	0.00	0.00	0.00	5.68
1896	3319	1.026718	CCCATTTCTGACCGCACCTC	61.027	60.000	0.00	0.00	0.00	3.85
1897	3320	1.026718	CCATTTCTGACCGCACCTCC	61.027	60.000	0.00	0.00	0.00	4.30
1898	3321	1.026718	CATTTCTGACCGCACCTCCC	61.027	60.000	0.00	0.00	0.00	4.30
1899	3322	1.201429	ATTTCTGACCGCACCTCCCT	61.201	55.000	0.00	0.00	0.00	4.20
1900	3323	1.827399	TTTCTGACCGCACCTCCCTC	61.827	60.000	0.00	0.00	0.00	4.30
1901	3324	2.681778	CTGACCGCACCTCCCTCT	60.682	66.667	0.00	0.00	0.00	3.69
1902	3325	2.680352	TGACCGCACCTCCCTCTC	60.680	66.667	0.00	0.00	0.00	3.20
1903	3326	3.827898	GACCGCACCTCCCTCTCG	61.828	72.222	0.00	0.00	0.00	4.04
1938	3361	0.727398	GCACCACTCGGCAGATAAAC	59.273	55.000	0.00	0.00	34.57	2.01
1954	3377	6.634039	GCAGATAAACCTGGTGTATTTAGGGA	60.634	42.308	10.83	0.00	35.89	4.20
2005	3428	2.686915	AGTATCCGGTGGAGTAAACTCG	59.313	50.000	0.00	0.00	43.76	4.18
2175	4380	2.376109	CTGGCCATTCTCTTGCTTCAT	58.624	47.619	5.51	0.00	0.00	2.57
2219	4424	1.151668	CTTTCTCGGTTGGTGCTCTG	58.848	55.000	0.00	0.00	0.00	3.35
2232	4437	0.251653	TGCTCTGAAGTACTCCGGGT	60.252	55.000	0.00	0.32	0.00	5.28
2234	4439	0.733729	CTCTGAAGTACTCCGGGTCG	59.266	60.000	0.00	0.00	0.00	4.79
2236	4441	0.733729	CTGAAGTACTCCGGGTCGAG	59.266	60.000	0.00	0.00	35.88	4.04
2290	4495	4.536765	ACAACCTCCAAGATTGTGTCTTT	58.463	39.130	0.00	0.00	44.80	2.52
2374	4579	3.007635	CTGCAATGCACTTCATCAGAGA	58.992	45.455	2.72	0.00	31.94	3.10
2397	4602	3.944015	GCTTGCACTTATCTCTCCACATT	59.056	43.478	0.00	0.00	0.00	2.71
2417	4622	3.634397	TCATTTCTCCGGAGCTTGAAT	57.366	42.857	27.39	18.71	0.00	2.57
2453	4658	2.035632	TCAACGGCTTTTGGAATGGTT	58.964	42.857	0.00	0.00	0.00	3.67
2484	4690	4.179579	GTGCATCCGAAAGCGCCC	62.180	66.667	2.29	0.00	35.33	6.13
2597	4803	4.104383	ACATGACCAAACTGTGATCCTT	57.896	40.909	0.00	0.00	0.00	3.36
2606	4812	0.539051	CTGTGATCCTTTCCTCGGCT	59.461	55.000	0.00	0.00	0.00	5.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	4.518211	AGAAACAGTTGGCAGAATCTTGAG	59.482	41.667	0.00	0.00	0.00	3.02
71	72	2.280797	GCTGGTCGGTGACTTGCA	60.281	61.111	8.81	0.00	33.72	4.08
192	193	4.311816	AGGTGTGTTCTTGCTGATTTTG	57.688	40.909	0.00	0.00	0.00	2.44
257	274	0.179018	CCCCGATGGATTTCCTGGAC	60.179	60.000	0.00	0.00	35.39	4.02
277	294	2.749441	GGCTGCAGAGTGGAAGCC	60.749	66.667	20.43	5.61	35.20	4.35
368	397	0.869880	CGCACGTCATATTCCGCTGA	60.870	55.000	0.00	0.00	0.00	4.26
817	894	8.980143	TTGCCTCTAAAGTTGCAAAATATTAC	57.020	30.769	0.00	0.00	40.46	1.89
857	934	2.430546	AGGAGATATTGCTTCTCGCG	57.569	50.000	0.00	0.00	43.27	5.87
940	2320	3.947834	ACAGGATGCCTTAATTGTGCTAC	59.052	43.478	0.00	0.00	42.53	3.58
975	2359	5.569823	GGCGACGCTTTCTTCTCTATATAAG	59.430	44.000	20.77	0.00	0.00	1.73
1104	2488	2.597805	ACGTCAGAGGACACGGCT	60.598	61.111	0.00	0.00	44.54	5.52
1275	2659	4.048504	TGTTGTTGTAGACAGTGTCGATG	58.951	43.478	17.40	0.00	39.94	3.84
1316	2700	0.603707	CTCTTTGCCCTCGAACAGCA	60.604	55.000	0.00	0.00	33.97	4.41
1317	2701	1.301677	CCTCTTTGCCCTCGAACAGC	61.302	60.000	0.00	0.00	0.00	4.40
1318	2702	0.674895	CCCTCTTTGCCCTCGAACAG	60.675	60.000	0.00	0.00	0.00	3.16
1361	2745	0.527565	ATAGGCTTGCTTGCAAACGG	59.472	50.000	9.39	0.00	34.04	4.44
1362	2746	1.470098	AGATAGGCTTGCTTGCAAACG	59.530	47.619	9.39	0.36	34.04	3.60
1371	2755	1.218230	CGGCTTCGAGATAGGCTTGC	61.218	60.000	7.47	0.00	36.15	4.01
1470	2854	0.179084	ACATATCACCGGCGTCCTTG	60.179	55.000	6.01	0.00	0.00	3.61
1537	2921	1.685517	CTCTCTCATCTGGCGATCCAA	59.314	52.381	0.00	0.00	42.91	3.53
1553	2937	2.024319	GTGACACCACAGCGCTCTC	61.024	63.158	7.13	0.00	42.72	3.20
1657	3041	0.468226	ACATGTCCAGACACAACCGT	59.532	50.000	1.88	0.00	45.05	4.83
1688	3072	2.420022	GGTGTTTCGCTGCATTATCAGT	59.580	45.455	0.00	0.00	36.49	3.41
1689	3073	2.679837	AGGTGTTTCGCTGCATTATCAG	59.320	45.455	0.00	0.00	37.15	2.90
1690	3074	2.677836	GAGGTGTTTCGCTGCATTATCA	59.322	45.455	0.00	0.00	0.00	2.15
1691	3075	2.939103	AGAGGTGTTTCGCTGCATTATC	59.061	45.455	0.00	0.00	0.00	1.75
1692	3076	2.991250	AGAGGTGTTTCGCTGCATTAT	58.009	42.857	0.00	0.00	0.00	1.28
1694	3078	1.537202	GAAGAGGTGTTTCGCTGCATT	59.463	47.619	0.00	0.00	0.00	3.56
1695	3079	1.160137	GAAGAGGTGTTTCGCTGCAT	58.840	50.000	0.00	0.00	0.00	3.96
1727	3144	8.286097	AGTAGATCTTCTCGCAAAAAGAAAAAG	58.714	33.333	0.00	0.00	35.29	2.27
1729	3146	7.095187	GGAGTAGATCTTCTCGCAAAAAGAAAA	60.095	37.037	19.52	0.00	35.29	2.29
1732	3149	5.186021	AGGAGTAGATCTTCTCGCAAAAAGA	59.814	40.000	19.52	0.00	36.05	2.52
1741	3158	4.340950	CCCAAGACAGGAGTAGATCTTCTC	59.659	50.000	18.42	18.42	27.49	2.87
1811	3234	4.102524	TCTTAACTGGGTTGTCTGTCATGT	59.897	41.667	0.00	0.00	0.00	3.21
1814	3237	3.494398	GCTCTTAACTGGGTTGTCTGTCA	60.494	47.826	0.00	0.00	0.00	3.58
1819	3242	1.270678	ACCGCTCTTAACTGGGTTGTC	60.271	52.381	0.00	0.00	0.00	3.18
1825	3248	2.688958	AGCTACTACCGCTCTTAACTGG	59.311	50.000	0.00	0.00	30.49	4.00
1834	3257	0.752009	TGCTGCTAGCTACTACCGCT	60.752	55.000	17.23	0.00	42.97	5.52
1837	3260	0.595310	GCGTGCTGCTAGCTACTACC	60.595	60.000	17.23	0.00	42.97	3.18
1878	3301	1.026718	GGAGGTGCGGTCAGAAATGG	61.027	60.000	0.00	0.00	0.00	3.16
1898	3321	3.827898	GGGAGTGGACGCCGAGAG	61.828	72.222	0.00	0.00	36.62	3.20
1917	3340	2.252072	TTATCTGCCGAGTGGTGCCC	62.252	60.000	0.00	0.00	37.67	5.36
1926	3349	0.981183	ACACCAGGTTTATCTGCCGA	59.019	50.000	0.00	0.00	33.64	5.54
1938	3361	8.996651	ATTAGAAATTCCCTAAATACACCAGG	57.003	34.615	4.90	0.00	30.85	4.45
2024	3447	1.543871	GGTCCGGCCAAAACTTACTGA	60.544	52.381	2.24	0.00	37.17	3.41
2027	3450	2.353323	CTAGGTCCGGCCAAAACTTAC	58.647	52.381	15.92	0.00	40.61	2.34
2112	3537	7.653311	TGACTGTATGCTAATATGTAGTTGCAG	59.347	37.037	3.45	0.00	33.87	4.41
2175	4380	1.482954	CAGAGGCTGATGACTGAGGA	58.517	55.000	0.00	0.00	32.44	3.71
2203	4408	0.318441	CTTCAGAGCACCAACCGAGA	59.682	55.000	0.00	0.00	0.00	4.04
2219	4424	0.393537	TCCTCGACCCGGAGTACTTC	60.394	60.000	0.73	0.00	31.98	3.01
2234	4439	2.593346	AAGCAGTGATCGATGTCCTC	57.407	50.000	0.54	0.00	0.00	3.71
2236	4441	3.786635	ACTAAAGCAGTGATCGATGTCC	58.213	45.455	0.54	0.00	35.62	4.02
2290	4495	3.069443	TGATGACTATGTCCGCATTGCTA	59.931	43.478	7.12	0.00	36.58	3.49
2374	4579	2.568956	TGTGGAGAGATAAGTGCAAGCT	59.431	45.455	0.00	0.00	0.00	3.74
2397	4602	3.055167	TGATTCAAGCTCCGGAGAAATGA	60.055	43.478	35.69	27.98	0.00	2.57
2417	4622	4.261783	GCCGTTGAGAGATATGATGACTGA	60.262	45.833	0.00	0.00	0.00	3.41
2453	4658	3.745975	CGGATGCACACAAGTCTTTTCTA	59.254	43.478	0.00	0.00	0.00	2.10
2484	4690	3.712091	ATCCGGAGAAGTACTTTAGCG	57.288	47.619	11.34	0.00	0.00	4.26

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.