Multiple sequence alignment - TraesCS3A01G003900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G003900 chr3A 100.000 4956 0 0 1 4956 1929343 1924388 0.000000e+00 9153.0
1 TraesCS3A01G003900 chr3B 89.360 3280 213 61 894 4075 4323500 4326741 0.000000e+00 3999.0
2 TraesCS3A01G003900 chr3B 88.024 167 4 8 4629 4780 4327333 4327498 3.050000e-42 183.0
3 TraesCS3A01G003900 chr3B 97.368 38 1 0 737 774 4323329 4323366 1.150000e-06 65.8
4 TraesCS3A01G003900 chr3B 93.182 44 0 1 803 846 4323371 4323411 1.490000e-05 62.1
5 TraesCS3A01G003900 chr3B 92.683 41 0 3 4906 4943 4327641 4327681 6.930000e-04 56.5
6 TraesCS3A01G003900 chr3B 100.000 28 0 0 844 871 4323422 4323449 9.000000e-03 52.8
7 TraesCS3A01G003900 chr3D 91.785 1339 62 17 1924 3228 2141039 2142363 0.000000e+00 1820.0
8 TraesCS3A01G003900 chr3D 90.848 1038 63 11 872 1896 2139969 2140987 0.000000e+00 1362.0
9 TraesCS3A01G003900 chr3D 90.893 571 26 11 3118 3670 2142564 2143126 0.000000e+00 743.0
10 TraesCS3A01G003900 chr3D 82.609 897 81 47 3599 4450 2143140 2144006 0.000000e+00 723.0
11 TraesCS3A01G003900 chr3D 86.047 301 27 8 1 291 2138903 2139198 4.820000e-80 309.0
12 TraesCS3A01G003900 chr3D 91.613 155 13 0 4496 4650 2144097 2144251 1.080000e-51 215.0
13 TraesCS3A01G003900 chr3D 91.096 146 3 5 4749 4894 2145816 2145951 6.550000e-44 189.0
14 TraesCS3A01G003900 chr3D 92.373 118 2 4 3118 3228 2142405 2142522 1.430000e-35 161.0
15 TraesCS3A01G003900 chr3D 93.750 48 1 2 4911 4956 2146017 2146064 2.480000e-08 71.3
16 TraesCS3A01G003900 chr1B 77.329 322 73 0 2048 2369 1416208 1416529 1.820000e-44 191.0
17 TraesCS3A01G003900 chr5D 84.058 138 20 2 2213 2349 480751730 480751594 1.120000e-26 132.0
18 TraesCS3A01G003900 chr5B 83.688 141 21 2 2210 2349 589229611 589229472 1.120000e-26 132.0
19 TraesCS3A01G003900 chr5A 83.688 141 21 2 2210 2349 599979492 599979353 1.120000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G003900 chr3A 1924388 1929343 4955 True 9153.000000 9153 100.000000 1 4956 1 chr3A.!!$R1 4955
1 TraesCS3A01G003900 chr3B 4323329 4327681 4352 False 736.533333 3999 93.436167 737 4943 6 chr3B.!!$F1 4206
2 TraesCS3A01G003900 chr3D 2138903 2146064 7161 False 621.477778 1820 90.112667 1 4956 9 chr3D.!!$F1 4955

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 1080 0.041090 TTCTTGCCATTTCCTCCCCC 59.959 55.0 0.00 0.00 0.00 5.40 F
1561 1877 0.120377 AACCCCTGTAGATCCCACCA 59.880 55.0 0.00 0.00 0.00 4.17 F
1951 2291 0.106708 TTCCTGTGCTGTGACCTGAC 59.893 55.0 0.00 0.00 0.00 3.51 F
2421 2773 0.097674 GATGCTGCGCGACATCTTTT 59.902 50.0 26.39 4.12 39.66 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1661 1977 0.035056 GACCTGTGGGATGTTGGGAG 60.035 60.0 0.00 0.00 36.25 4.30 R
2422 2774 0.179134 CAGTCGGAACTCGGGACATC 60.179 60.0 0.00 0.00 39.77 3.06 R
3727 4560 0.110147 CGGTTAGGCTATCGAGAGCG 60.110 60.0 24.44 6.95 43.83 5.03 R
4158 5063 0.107017 CGCCCATGATTCCCAAGAGT 60.107 55.0 0.00 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 46 7.444629 TCATCATCACAGAGGAAAAAGAAAG 57.555 36.000 0.00 0.00 0.00 2.62
62 64 6.097915 AGAAAGAAGTTTACTCGACCATGA 57.902 37.500 0.00 0.00 0.00 3.07
67 69 4.124851 AGTTTACTCGACCATGATCACC 57.875 45.455 0.00 0.00 0.00 4.02
71 73 1.067669 ACTCGACCATGATCACCATCG 59.932 52.381 14.91 14.91 31.94 3.84
75 77 2.608016 CGACCATGATCACCATCGTAGG 60.608 54.545 13.48 3.14 31.94 3.18
107 110 6.531948 CCGAGATTTGAGAAAAGAGTATCGTT 59.468 38.462 0.00 0.00 42.67 3.85
134 140 9.710979 TTCTTTAATTCGGTAAGCATTTATTCG 57.289 29.630 0.00 0.00 0.00 3.34
135 141 7.853929 TCTTTAATTCGGTAAGCATTTATTCGC 59.146 33.333 0.00 0.00 0.00 4.70
142 148 5.577835 GGTAAGCATTTATTCGCACAATCA 58.422 37.500 0.00 0.00 0.00 2.57
167 173 8.120465 CACATTAGTTTAGGCAGGTAAATAACG 58.880 37.037 0.00 0.00 0.00 3.18
194 200 2.126888 CAACCCACGCGCATTGTC 60.127 61.111 5.73 0.00 0.00 3.18
208 214 6.702723 ACGCGCATTGTCCTAATAGTTAATTA 59.297 34.615 5.73 0.00 0.00 1.40
262 269 2.647299 TGTGATAAAAGGAGGGAGCCAA 59.353 45.455 0.00 0.00 0.00 4.52
291 298 5.872070 GGCATGCTATTAACTCTAGCCTAAG 59.128 44.000 18.92 0.00 40.72 2.18
293 300 6.459066 CATGCTATTAACTCTAGCCTAAGCA 58.541 40.000 4.53 0.00 43.56 3.91
294 301 6.479972 TGCTATTAACTCTAGCCTAAGCAA 57.520 37.500 4.53 0.00 43.56 3.91
295 302 6.516718 TGCTATTAACTCTAGCCTAAGCAAG 58.483 40.000 4.53 0.00 43.56 4.01
296 303 6.323996 TGCTATTAACTCTAGCCTAAGCAAGA 59.676 38.462 4.53 0.00 43.56 3.02
299 306 3.878160 ACTCTAGCCTAAGCAAGACAC 57.122 47.619 0.00 0.00 43.56 3.67
301 308 1.476891 TCTAGCCTAAGCAAGACACGG 59.523 52.381 0.00 0.00 43.56 4.94
302 309 1.204941 CTAGCCTAAGCAAGACACGGT 59.795 52.381 0.00 0.00 43.56 4.83
303 310 0.320771 AGCCTAAGCAAGACACGGTG 60.321 55.000 6.58 6.58 43.56 4.94
304 311 1.912371 GCCTAAGCAAGACACGGTGC 61.912 60.000 8.30 1.14 41.22 5.01
309 316 2.247790 GCAAGACACGGTGCTGAAT 58.752 52.632 8.30 0.00 37.78 2.57
310 317 0.166814 GCAAGACACGGTGCTGAATC 59.833 55.000 8.30 0.00 37.78 2.52
311 318 1.511850 CAAGACACGGTGCTGAATCA 58.488 50.000 8.30 0.00 0.00 2.57
312 319 1.872952 CAAGACACGGTGCTGAATCAA 59.127 47.619 8.30 0.00 0.00 2.57
313 320 2.479566 AGACACGGTGCTGAATCAAT 57.520 45.000 8.30 0.00 0.00 2.57
314 321 2.350522 AGACACGGTGCTGAATCAATC 58.649 47.619 8.30 0.00 0.00 2.67
315 322 2.076100 GACACGGTGCTGAATCAATCA 58.924 47.619 8.30 0.00 36.38 2.57
316 323 2.679837 GACACGGTGCTGAATCAATCAT 59.320 45.455 8.30 0.00 37.44 2.45
317 324 2.679837 ACACGGTGCTGAATCAATCATC 59.320 45.455 8.30 0.00 37.44 2.92
318 325 2.679336 CACGGTGCTGAATCAATCATCA 59.321 45.455 0.00 0.00 37.44 3.07
319 326 3.127376 CACGGTGCTGAATCAATCATCAA 59.873 43.478 0.00 0.00 36.04 2.57
320 327 3.376234 ACGGTGCTGAATCAATCATCAAG 59.624 43.478 0.00 0.00 36.04 3.02
321 328 3.624410 CGGTGCTGAATCAATCATCAAGA 59.376 43.478 0.00 0.00 36.04 3.02
322 329 4.095334 CGGTGCTGAATCAATCATCAAGAA 59.905 41.667 0.00 0.00 36.04 2.52
323 330 5.392272 CGGTGCTGAATCAATCATCAAGAAA 60.392 40.000 0.00 0.00 36.04 2.52
324 331 6.034591 GGTGCTGAATCAATCATCAAGAAAG 58.965 40.000 0.00 0.00 36.04 2.62
325 332 6.349944 GGTGCTGAATCAATCATCAAGAAAGT 60.350 38.462 0.00 0.00 36.04 2.66
326 333 7.148188 GGTGCTGAATCAATCATCAAGAAAGTA 60.148 37.037 0.00 0.00 36.04 2.24
327 334 8.239314 GTGCTGAATCAATCATCAAGAAAGTAA 58.761 33.333 0.00 0.00 36.04 2.24
328 335 8.456471 TGCTGAATCAATCATCAAGAAAGTAAG 58.544 33.333 0.00 0.00 37.44 2.34
329 336 8.457261 GCTGAATCAATCATCAAGAAAGTAAGT 58.543 33.333 0.00 0.00 37.44 2.24
347 354 1.067776 AGTAGAAGAGAAACCGCGTGG 60.068 52.381 14.93 14.93 42.84 4.94
355 362 1.901650 GAAACCGCGTGGCAAGAGAG 61.902 60.000 16.69 0.00 39.70 3.20
356 363 2.377628 AAACCGCGTGGCAAGAGAGA 62.378 55.000 16.69 0.00 39.70 3.10
357 364 2.507992 CCGCGTGGCAAGAGAGAG 60.508 66.667 0.00 0.00 0.00 3.20
358 365 2.568612 CGCGTGGCAAGAGAGAGA 59.431 61.111 4.11 0.00 0.00 3.10
359 366 1.515952 CGCGTGGCAAGAGAGAGAG 60.516 63.158 4.11 0.00 0.00 3.20
362 369 1.458398 CGTGGCAAGAGAGAGAGAGA 58.542 55.000 0.00 0.00 0.00 3.10
363 370 1.401552 CGTGGCAAGAGAGAGAGAGAG 59.598 57.143 0.00 0.00 0.00 3.20
364 371 2.722094 GTGGCAAGAGAGAGAGAGAGA 58.278 52.381 0.00 0.00 0.00 3.10
365 372 2.684881 GTGGCAAGAGAGAGAGAGAGAG 59.315 54.545 0.00 0.00 0.00 3.20
366 373 2.301346 GGCAAGAGAGAGAGAGAGAGG 58.699 57.143 0.00 0.00 0.00 3.69
367 374 2.301346 GCAAGAGAGAGAGAGAGAGGG 58.699 57.143 0.00 0.00 0.00 4.30
368 375 2.936202 CAAGAGAGAGAGAGAGAGGGG 58.064 57.143 0.00 0.00 0.00 4.79
369 376 2.509548 CAAGAGAGAGAGAGAGAGGGGA 59.490 54.545 0.00 0.00 0.00 4.81
374 381 3.596046 AGAGAGAGAGAGAGGGGAAGAAA 59.404 47.826 0.00 0.00 0.00 2.52
384 391 5.790096 AGAGAGGGGAAGAAAAGAAGAGAAT 59.210 40.000 0.00 0.00 0.00 2.40
385 392 5.814481 AGAGGGGAAGAAAAGAAGAGAATG 58.186 41.667 0.00 0.00 0.00 2.67
390 397 6.071672 GGGGAAGAAAAGAAGAGAATGGAAAG 60.072 42.308 0.00 0.00 0.00 2.62
391 398 6.491745 GGGAAGAAAAGAAGAGAATGGAAAGT 59.508 38.462 0.00 0.00 0.00 2.66
393 400 7.013750 GGAAGAAAAGAAGAGAATGGAAAGTGT 59.986 37.037 0.00 0.00 0.00 3.55
394 401 7.888250 AGAAAAGAAGAGAATGGAAAGTGTT 57.112 32.000 0.00 0.00 0.00 3.32
395 402 8.980481 AGAAAAGAAGAGAATGGAAAGTGTTA 57.020 30.769 0.00 0.00 0.00 2.41
396 403 9.408648 AGAAAAGAAGAGAATGGAAAGTGTTAA 57.591 29.630 0.00 0.00 0.00 2.01
450 477 2.159517 GCGGTGGTCAAGCTGATAAAAG 60.160 50.000 0.00 0.00 0.00 2.27
451 478 3.074412 CGGTGGTCAAGCTGATAAAAGT 58.926 45.455 0.00 0.00 0.00 2.66
452 479 3.125316 CGGTGGTCAAGCTGATAAAAGTC 59.875 47.826 0.00 0.00 0.00 3.01
453 480 3.125316 GGTGGTCAAGCTGATAAAAGTCG 59.875 47.826 0.00 0.00 0.00 4.18
454 481 3.125316 GTGGTCAAGCTGATAAAAGTCGG 59.875 47.826 0.00 0.00 0.00 4.79
455 482 3.244422 TGGTCAAGCTGATAAAAGTCGGT 60.244 43.478 0.00 0.00 0.00 4.69
456 483 3.371285 GGTCAAGCTGATAAAAGTCGGTC 59.629 47.826 0.00 0.00 0.00 4.79
457 484 3.371285 GTCAAGCTGATAAAAGTCGGTCC 59.629 47.826 0.00 0.00 0.00 4.46
458 485 3.260884 TCAAGCTGATAAAAGTCGGTCCT 59.739 43.478 0.00 0.00 0.00 3.85
459 486 3.983044 AGCTGATAAAAGTCGGTCCTT 57.017 42.857 0.00 0.00 0.00 3.36
460 487 4.287766 AGCTGATAAAAGTCGGTCCTTT 57.712 40.909 0.00 0.00 36.23 3.11
461 488 4.652822 AGCTGATAAAAGTCGGTCCTTTT 58.347 39.130 11.30 11.30 44.55 2.27
462 489 5.070685 AGCTGATAAAAGTCGGTCCTTTTT 58.929 37.500 11.66 0.00 40.78 1.94
463 490 5.181433 AGCTGATAAAAGTCGGTCCTTTTTC 59.819 40.000 11.66 10.02 40.78 2.29
472 528 1.270839 CGGTCCTTTTTCCTCTGCTCA 60.271 52.381 0.00 0.00 0.00 4.26
474 530 2.224646 GGTCCTTTTTCCTCTGCTCAGT 60.225 50.000 0.00 0.00 0.00 3.41
475 531 3.008049 GGTCCTTTTTCCTCTGCTCAGTA 59.992 47.826 0.00 0.00 0.00 2.74
476 532 4.249661 GTCCTTTTTCCTCTGCTCAGTAG 58.750 47.826 0.00 0.00 0.00 2.57
491 547 4.116961 CTCAGTAGAGTAGAGTGGACGAG 58.883 52.174 0.00 0.00 37.11 4.18
494 550 2.116827 AGAGTAGAGTGGACGAGTGG 57.883 55.000 0.00 0.00 0.00 4.00
495 551 1.629353 AGAGTAGAGTGGACGAGTGGA 59.371 52.381 0.00 0.00 0.00 4.02
496 552 2.040012 AGAGTAGAGTGGACGAGTGGAA 59.960 50.000 0.00 0.00 0.00 3.53
497 553 3.018149 GAGTAGAGTGGACGAGTGGAAT 58.982 50.000 0.00 0.00 0.00 3.01
498 554 3.018149 AGTAGAGTGGACGAGTGGAATC 58.982 50.000 0.00 0.00 0.00 2.52
499 555 1.187087 AGAGTGGACGAGTGGAATCC 58.813 55.000 0.00 0.00 0.00 3.01
501 557 0.898320 AGTGGACGAGTGGAATCCAG 59.102 55.000 0.27 0.00 43.18 3.86
502 558 0.608640 GTGGACGAGTGGAATCCAGT 59.391 55.000 9.79 9.79 43.18 4.00
512 568 0.105039 GGAATCCAGTCCAGCTACGG 59.895 60.000 0.00 0.00 37.65 4.02
539 654 3.327404 GATCACGGGTGGGTGGGT 61.327 66.667 0.00 0.00 38.46 4.51
546 661 3.966543 GGTGGGTGGGTGGGTGAG 61.967 72.222 0.00 0.00 0.00 3.51
547 662 2.852075 GTGGGTGGGTGGGTGAGA 60.852 66.667 0.00 0.00 0.00 3.27
548 663 2.529136 TGGGTGGGTGGGTGAGAG 60.529 66.667 0.00 0.00 0.00 3.20
549 664 3.330720 GGGTGGGTGGGTGAGAGG 61.331 72.222 0.00 0.00 0.00 3.69
550 665 3.330720 GGTGGGTGGGTGAGAGGG 61.331 72.222 0.00 0.00 0.00 4.30
551 666 2.203938 GTGGGTGGGTGAGAGGGA 60.204 66.667 0.00 0.00 0.00 4.20
552 667 2.122729 TGGGTGGGTGAGAGGGAG 59.877 66.667 0.00 0.00 0.00 4.30
553 668 2.689034 GGGTGGGTGAGAGGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
554 669 2.689034 GGTGGGTGAGAGGGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
556 671 1.687493 GTGGGTGAGAGGGAGGGAG 60.687 68.421 0.00 0.00 0.00 4.30
557 672 2.041405 GGGTGAGAGGGAGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
558 673 2.637640 GGGTGAGAGGGAGGGAGGA 61.638 68.421 0.00 0.00 0.00 3.71
560 675 1.585651 GGTGAGAGGGAGGGAGGAGA 61.586 65.000 0.00 0.00 0.00 3.71
561 676 0.336737 GTGAGAGGGAGGGAGGAGAA 59.663 60.000 0.00 0.00 0.00 2.87
562 677 0.633921 TGAGAGGGAGGGAGGAGAAG 59.366 60.000 0.00 0.00 0.00 2.85
563 678 0.105709 GAGAGGGAGGGAGGAGAAGG 60.106 65.000 0.00 0.00 0.00 3.46
564 679 1.074850 GAGGGAGGGAGGAGAAGGG 60.075 68.421 0.00 0.00 0.00 3.95
565 680 2.040359 GGGAGGGAGGAGAAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
566 681 2.647949 GGGAGGGAGGAGAAGGGGA 61.648 68.421 0.00 0.00 0.00 4.81
596 711 8.990163 TTGGTTTAGGAAAGAATTTAGTCACT 57.010 30.769 0.00 0.00 39.27 3.41
597 712 8.391075 TGGTTTAGGAAAGAATTTAGTCACTG 57.609 34.615 0.00 0.00 39.27 3.66
598 713 7.996644 TGGTTTAGGAAAGAATTTAGTCACTGT 59.003 33.333 0.00 0.00 39.27 3.55
599 714 8.847196 GGTTTAGGAAAGAATTTAGTCACTGTT 58.153 33.333 0.00 0.00 39.27 3.16
600 715 9.880064 GTTTAGGAAAGAATTTAGTCACTGTTC 57.120 33.333 0.00 0.00 39.27 3.18
601 716 9.621629 TTTAGGAAAGAATTTAGTCACTGTTCA 57.378 29.630 0.00 0.00 39.27 3.18
602 717 9.793259 TTAGGAAAGAATTTAGTCACTGTTCAT 57.207 29.630 0.00 0.00 39.27 2.57
603 718 8.329203 AGGAAAGAATTTAGTCACTGTTCATC 57.671 34.615 0.00 0.00 39.27 2.92
614 774 2.602211 CACTGTTCATCTCGTCTCATGC 59.398 50.000 0.00 0.00 0.00 4.06
630 790 3.476552 TCATGCTTGTTTCTCTTTCCGT 58.523 40.909 0.00 0.00 0.00 4.69
631 791 3.498397 TCATGCTTGTTTCTCTTTCCGTC 59.502 43.478 0.00 0.00 0.00 4.79
632 792 2.218603 TGCTTGTTTCTCTTTCCGTCC 58.781 47.619 0.00 0.00 0.00 4.79
633 793 1.194772 GCTTGTTTCTCTTTCCGTCCG 59.805 52.381 0.00 0.00 0.00 4.79
634 794 1.194772 CTTGTTTCTCTTTCCGTCCGC 59.805 52.381 0.00 0.00 0.00 5.54
635 795 0.942410 TGTTTCTCTTTCCGTCCGCG 60.942 55.000 0.00 0.00 37.95 6.46
645 805 2.507769 CGTCCGCGGTTACCTTCC 60.508 66.667 27.15 3.13 0.00 3.46
653 813 0.912968 CGGTTACCTTCCCCTTCCCT 60.913 60.000 0.00 0.00 0.00 4.20
656 816 0.476808 TTACCTTCCCCTTCCCTGCA 60.477 55.000 0.00 0.00 0.00 4.41
657 817 0.253630 TACCTTCCCCTTCCCTGCAT 60.254 55.000 0.00 0.00 0.00 3.96
659 819 1.228510 CTTCCCCTTCCCTGCATCC 59.771 63.158 0.00 0.00 0.00 3.51
660 820 2.290021 CTTCCCCTTCCCTGCATCCC 62.290 65.000 0.00 0.00 0.00 3.85
662 822 4.195334 CCCTTCCCTGCATCCCCG 62.195 72.222 0.00 0.00 0.00 5.73
678 838 4.481112 CGCCGCCTTCAATGCCAC 62.481 66.667 0.00 0.00 0.00 5.01
679 839 4.133796 GCCGCCTTCAATGCCACC 62.134 66.667 0.00 0.00 0.00 4.61
680 840 2.676121 CCGCCTTCAATGCCACCA 60.676 61.111 0.00 0.00 0.00 4.17
681 841 2.568090 CGCCTTCAATGCCACCAC 59.432 61.111 0.00 0.00 0.00 4.16
682 842 2.973082 GCCTTCAATGCCACCACC 59.027 61.111 0.00 0.00 0.00 4.61
683 843 2.993471 GCCTTCAATGCCACCACCG 61.993 63.158 0.00 0.00 0.00 4.94
684 844 2.568090 CTTCAATGCCACCACCGC 59.432 61.111 0.00 0.00 0.00 5.68
685 845 1.973281 CTTCAATGCCACCACCGCT 60.973 57.895 0.00 0.00 0.00 5.52
686 846 1.926511 CTTCAATGCCACCACCGCTC 61.927 60.000 0.00 0.00 0.00 5.03
687 847 2.360350 CAATGCCACCACCGCTCT 60.360 61.111 0.00 0.00 0.00 4.09
708 868 3.815856 TTCACTGCTGGATCTGATCTC 57.184 47.619 16.61 8.11 0.00 2.75
709 869 2.037901 TCACTGCTGGATCTGATCTCC 58.962 52.381 16.61 4.06 0.00 3.71
710 870 2.040939 CACTGCTGGATCTGATCTCCT 58.959 52.381 16.61 0.00 33.69 3.69
711 871 2.040939 ACTGCTGGATCTGATCTCCTG 58.959 52.381 16.61 8.41 35.47 3.86
712 872 2.317973 CTGCTGGATCTGATCTCCTGA 58.682 52.381 16.61 0.00 34.58 3.86
713 873 2.297880 CTGCTGGATCTGATCTCCTGAG 59.702 54.545 16.61 7.07 34.58 3.35
714 874 2.091444 TGCTGGATCTGATCTCCTGAGA 60.091 50.000 16.61 0.00 42.37 3.27
715 875 2.559668 GCTGGATCTGATCTCCTGAGAG 59.440 54.545 16.61 0.00 41.33 3.20
777 1012 1.520564 TTCGGTGCGAATCCATCCG 60.521 57.895 0.00 0.00 41.05 4.18
778 1013 2.202878 CGGTGCGAATCCATCCGT 60.203 61.111 0.00 0.00 36.99 4.69
779 1014 2.525248 CGGTGCGAATCCATCCGTG 61.525 63.158 0.00 0.00 36.99 4.94
796 1040 1.378514 TGCGGGGATCTTTTGCTCC 60.379 57.895 0.00 0.00 34.13 4.70
798 1042 1.657751 GCGGGGATCTTTTGCTCCAC 61.658 60.000 0.00 0.00 36.49 4.02
799 1043 1.032114 CGGGGATCTTTTGCTCCACC 61.032 60.000 0.00 0.00 34.77 4.61
801 1045 1.032114 GGGATCTTTTGCTCCACCCG 61.032 60.000 0.00 0.00 36.49 5.28
831 1078 2.514458 TCTTCTTGCCATTTCCTCCC 57.486 50.000 0.00 0.00 0.00 4.30
832 1079 1.005924 TCTTCTTGCCATTTCCTCCCC 59.994 52.381 0.00 0.00 0.00 4.81
833 1080 0.041090 TTCTTGCCATTTCCTCCCCC 59.959 55.000 0.00 0.00 0.00 5.40
834 1081 1.754234 CTTGCCATTTCCTCCCCCG 60.754 63.158 0.00 0.00 0.00 5.73
835 1082 2.499303 CTTGCCATTTCCTCCCCCGT 62.499 60.000 0.00 0.00 0.00 5.28
838 1085 1.320344 GCCATTTCCTCCCCCGTTTC 61.320 60.000 0.00 0.00 0.00 2.78
839 1086 0.331616 CCATTTCCTCCCCCGTTTCT 59.668 55.000 0.00 0.00 0.00 2.52
840 1087 1.272480 CCATTTCCTCCCCCGTTTCTT 60.272 52.381 0.00 0.00 0.00 2.52
842 1089 1.142060 TTTCCTCCCCCGTTTCTTGA 58.858 50.000 0.00 0.00 0.00 3.02
956 1254 4.023193 CCTTCAGTATCCAACACCAACAAC 60.023 45.833 0.00 0.00 0.00 3.32
957 1255 4.157849 TCAGTATCCAACACCAACAACA 57.842 40.909 0.00 0.00 0.00 3.33
958 1256 4.527944 TCAGTATCCAACACCAACAACAA 58.472 39.130 0.00 0.00 0.00 2.83
959 1257 4.578516 TCAGTATCCAACACCAACAACAAG 59.421 41.667 0.00 0.00 0.00 3.16
960 1258 3.888930 AGTATCCAACACCAACAACAAGG 59.111 43.478 0.00 0.00 0.00 3.61
961 1259 0.820871 TCCAACACCAACAACAAGGC 59.179 50.000 0.00 0.00 0.00 4.35
962 1260 0.534412 CCAACACCAACAACAAGGCA 59.466 50.000 0.00 0.00 0.00 4.75
970 1271 1.039233 AACAACAAGGCACTGCTGCT 61.039 50.000 0.00 0.00 43.66 4.24
987 1288 1.227497 CTGCTGTGCTAGGCTAGGC 60.227 63.158 22.40 16.74 0.00 3.93
988 1289 1.684386 CTGCTGTGCTAGGCTAGGCT 61.684 60.000 23.67 23.67 0.00 4.58
989 1290 0.397114 TGCTGTGCTAGGCTAGGCTA 60.397 55.000 23.36 23.36 0.00 3.93
990 1291 0.316841 GCTGTGCTAGGCTAGGCTAG 59.683 60.000 36.89 36.89 0.00 3.42
1089 1390 3.707189 TCCTCCCCCTTCTCCCCC 61.707 72.222 0.00 0.00 0.00 5.40
1288 1604 2.180017 CAACAATGCCGCCTGCTC 59.820 61.111 0.00 0.00 42.00 4.26
1289 1605 2.282391 AACAATGCCGCCTGCTCA 60.282 55.556 0.00 0.00 42.00 4.26
1290 1606 1.902918 AACAATGCCGCCTGCTCAA 60.903 52.632 0.00 0.00 42.00 3.02
1551 1867 2.126372 CCCTCCCCAACCCCTGTA 59.874 66.667 0.00 0.00 0.00 2.74
1552 1868 2.001269 CCCTCCCCAACCCCTGTAG 61.001 68.421 0.00 0.00 0.00 2.74
1553 1869 1.082206 CCTCCCCAACCCCTGTAGA 59.918 63.158 0.00 0.00 0.00 2.59
1561 1877 0.120377 AACCCCTGTAGATCCCACCA 59.880 55.000 0.00 0.00 0.00 4.17
1562 1878 0.620700 ACCCCTGTAGATCCCACCAC 60.621 60.000 0.00 0.00 0.00 4.16
1567 1883 1.020462 TGTAGATCCCACCACCCCTA 58.980 55.000 0.00 0.00 0.00 3.53
1570 1886 0.326618 AGATCCCACCACCCCTACTG 60.327 60.000 0.00 0.00 0.00 2.74
1620 1936 1.616994 CCAGGTTTTGGTCCTCCATCC 60.617 57.143 0.00 0.00 43.91 3.51
1661 1977 1.370810 CCCCACCAACACCAATTGC 59.629 57.895 0.00 0.00 0.00 3.56
1671 1987 1.895131 ACACCAATTGCTCCCAACATC 59.105 47.619 0.00 0.00 32.95 3.06
1679 1995 2.078452 CTCCCAACATCCCACAGGT 58.922 57.895 0.00 0.00 0.00 4.00
1701 2017 1.600638 CTCATGGCAGGACAGCAGA 59.399 57.895 0.00 0.00 35.83 4.26
1896 2212 6.585695 TCTCCACAAGTGTTACTAGGTAAG 57.414 41.667 0.00 0.00 0.00 2.34
1898 2214 6.015688 TCTCCACAAGTGTTACTAGGTAAGTG 60.016 42.308 0.00 0.00 39.39 3.16
1899 2215 4.689345 CCACAAGTGTTACTAGGTAAGTGC 59.311 45.833 0.00 0.00 39.39 4.40
1900 2216 5.294356 CACAAGTGTTACTAGGTAAGTGCA 58.706 41.667 0.00 0.00 39.39 4.57
1902 2218 6.426937 CACAAGTGTTACTAGGTAAGTGCATT 59.573 38.462 0.00 0.00 39.39 3.56
1903 2219 6.649557 ACAAGTGTTACTAGGTAAGTGCATTC 59.350 38.462 0.00 0.00 39.39 2.67
1904 2220 5.731591 AGTGTTACTAGGTAAGTGCATTCC 58.268 41.667 0.00 0.00 39.39 3.01
1919 2235 0.749454 ATTCCCGTGCAATGAGCTCC 60.749 55.000 12.15 0.00 45.94 4.70
1946 2286 2.749076 TGCATTATTCCTGTGCTGTGAC 59.251 45.455 0.00 0.00 39.52 3.67
1951 2291 0.106708 TTCCTGTGCTGTGACCTGAC 59.893 55.000 0.00 0.00 0.00 3.51
1977 2321 6.340522 ACTGAAACTCAATTTTTGTTCAGGG 58.659 36.000 16.92 2.30 41.66 4.45
2202 2546 6.494835 AGGTTGCCATTAAGAAACTGAAAGAT 59.505 34.615 0.00 0.00 37.43 2.40
2208 2552 6.071728 CCATTAAGAAACTGAAAGATGGCAGT 60.072 38.462 0.00 0.00 46.59 4.40
2340 2684 3.417101 TGTCTACGATTTTGTGCCCAAT 58.583 40.909 0.00 0.00 0.00 3.16
2421 2773 0.097674 GATGCTGCGCGACATCTTTT 59.902 50.000 26.39 4.12 39.66 2.27
2422 2774 0.179181 ATGCTGCGCGACATCTTTTG 60.179 50.000 12.10 0.00 0.00 2.44
2524 2883 0.824109 GGCCAGCCAGGGTTAAAATC 59.176 55.000 3.12 0.00 38.09 2.17
2597 2960 5.114081 CCCATTCTCATTCATTTGCTTTCC 58.886 41.667 0.00 0.00 0.00 3.13
2732 3099 3.278574 GCACAGGTAACAATGCCATCTA 58.721 45.455 0.00 0.00 42.21 1.98
2733 3100 3.065371 GCACAGGTAACAATGCCATCTAC 59.935 47.826 0.00 0.00 42.21 2.59
2734 3101 4.260985 CACAGGTAACAATGCCATCTACA 58.739 43.478 0.00 0.00 41.41 2.74
2735 3102 4.883585 CACAGGTAACAATGCCATCTACAT 59.116 41.667 0.00 0.00 41.41 2.29
2738 3105 6.542370 ACAGGTAACAATGCCATCTACATAAC 59.458 38.462 0.00 0.00 41.41 1.89
2739 3106 6.767902 CAGGTAACAATGCCATCTACATAACT 59.232 38.462 0.00 0.00 41.41 2.24
2740 3107 6.992715 AGGTAACAATGCCATCTACATAACTC 59.007 38.462 0.00 0.00 41.41 3.01
2741 3108 5.991328 AACAATGCCATCTACATAACTCG 57.009 39.130 0.00 0.00 0.00 4.18
2742 3109 4.380531 ACAATGCCATCTACATAACTCGG 58.619 43.478 0.00 0.00 0.00 4.63
2743 3110 3.685139 ATGCCATCTACATAACTCGGG 57.315 47.619 0.00 0.00 0.00 5.14
2744 3111 2.673258 TGCCATCTACATAACTCGGGA 58.327 47.619 0.00 0.00 0.00 5.14
2745 3112 3.035363 TGCCATCTACATAACTCGGGAA 58.965 45.455 0.00 0.00 0.00 3.97
2746 3113 3.452990 TGCCATCTACATAACTCGGGAAA 59.547 43.478 0.00 0.00 0.00 3.13
2747 3114 3.808174 GCCATCTACATAACTCGGGAAAC 59.192 47.826 0.00 0.00 0.00 2.78
2768 3135 7.122055 GGAAACCCACTGTAATATGATTGTTGA 59.878 37.037 0.00 0.00 0.00 3.18
2787 3154 7.848223 TGTTGATACTGAATTGGATACTGTG 57.152 36.000 0.00 0.00 37.61 3.66
2792 3159 4.592942 ACTGAATTGGATACTGTGCATGT 58.407 39.130 0.00 0.00 37.61 3.21
2839 3206 3.659183 AGACTAGCCATGGATTTTGCT 57.341 42.857 18.40 6.52 37.84 3.91
2909 3284 3.119459 AGCTGACTGGTACACGACAATAG 60.119 47.826 0.00 0.00 0.00 1.73
2994 3379 1.273048 GCATCCAGTGGCAAATTGACA 59.727 47.619 3.51 0.00 29.15 3.58
3057 3442 3.118223 AGCTCATTACTGGTAGAAAGCCC 60.118 47.826 0.00 0.00 0.00 5.19
3063 3448 0.458025 CTGGTAGAAAGCCCGTCGAC 60.458 60.000 5.18 5.18 0.00 4.20
3081 3466 1.750778 GACGCATCAAATCCATTGGGT 59.249 47.619 2.09 0.00 39.62 4.51
3115 3500 5.664294 TGTCGAGTGGGTAAGCTTTATTA 57.336 39.130 3.20 0.00 0.00 0.98
3116 3501 5.413499 TGTCGAGTGGGTAAGCTTTATTAC 58.587 41.667 3.20 0.00 35.35 1.89
3252 3972 8.967664 TTCATAGACAATGTGATGATGATCAA 57.032 30.769 0.00 0.00 40.39 2.57
3258 3978 8.967918 AGACAATGTGATGATGATCAAATCTTT 58.032 29.630 17.81 9.56 40.39 2.52
3259 3979 9.234384 GACAATGTGATGATGATCAAATCTTTC 57.766 33.333 17.81 4.52 40.39 2.62
3260 3980 8.745590 ACAATGTGATGATGATCAAATCTTTCA 58.254 29.630 17.81 9.37 40.39 2.69
3261 3981 9.237846 CAATGTGATGATGATCAAATCTTTCAG 57.762 33.333 17.81 6.54 40.39 3.02
3263 3983 8.344446 TGTGATGATGATCAAATCTTTCAGTT 57.656 30.769 17.81 0.00 40.39 3.16
3265 3985 7.914346 GTGATGATGATCAAATCTTTCAGTTCC 59.086 37.037 17.81 3.00 40.39 3.62
3267 3987 7.387119 TGATGATCAAATCTTTCAGTTCCAG 57.613 36.000 0.00 0.00 0.00 3.86
3287 4012 9.438291 GTTCCAGTTATTTGTCATGATTATTCG 57.562 33.333 0.00 0.00 0.00 3.34
3367 4110 3.070446 TCCGACACAATCCTGTTGTAACT 59.930 43.478 0.00 0.00 31.64 2.24
3393 4140 9.434275 TCTGGTTTATAAGATTGATCCTCTGTA 57.566 33.333 0.00 0.00 0.00 2.74
3413 4165 2.997485 GTCAGCAACATTTCCTGACC 57.003 50.000 8.42 0.00 45.97 4.02
3414 4166 1.541588 GTCAGCAACATTTCCTGACCC 59.458 52.381 8.42 0.00 45.97 4.46
3448 4200 2.124942 GCTAGGCCACTGCTGACC 60.125 66.667 5.01 0.00 37.74 4.02
3622 4374 6.336566 AGGATATCGATGAGATTACATGCAC 58.663 40.000 8.54 0.00 40.66 4.57
3653 4405 4.574828 TCTTTTCAGAACAGCAACTACACC 59.425 41.667 0.00 0.00 0.00 4.16
3686 4519 4.141135 TGGATTGGACCAGAGGTTAAAACA 60.141 41.667 0.00 0.00 35.25 2.83
3701 4534 5.927115 GGTTAAAACATTTTTATCACCGGCA 59.073 36.000 0.00 0.00 0.00 5.69
3727 4560 2.740055 CTGTCTCAGGTGGTGCGC 60.740 66.667 0.00 0.00 0.00 6.09
3877 4710 1.292541 GACCGACTTCACCCAGTCC 59.707 63.158 0.00 0.00 40.26 3.85
3964 4800 6.027749 GCAATTGCAACCATAGTAGTGTAAC 58.972 40.000 25.36 0.00 41.59 2.50
3979 4815 1.363629 TGTAACTAGCTAGGGTGGGGT 59.636 52.381 24.35 0.00 0.00 4.95
3985 4821 4.229639 ACTAGCTAGGGTGGGGTTATTAC 58.770 47.826 24.35 0.00 0.00 1.89
4034 4872 1.141234 GGGTGGATCGTCCGTCTTC 59.859 63.158 0.59 0.00 40.17 2.87
4035 4873 1.226603 GGTGGATCGTCCGTCTTCG 60.227 63.158 0.59 0.00 40.17 3.79
4101 4959 2.832931 GCATATAGCGTGCTGGGAG 58.167 57.895 4.25 0.00 39.45 4.30
4108 4966 3.449227 CGTGCTGGGAGCCGTCTA 61.449 66.667 0.00 0.00 41.51 2.59
4111 4969 1.381191 TGCTGGGAGCCGTCTATGA 60.381 57.895 0.00 0.00 41.51 2.15
4114 4972 1.618837 GCTGGGAGCCGTCTATGAATA 59.381 52.381 0.00 0.00 34.48 1.75
4115 4973 2.353208 GCTGGGAGCCGTCTATGAATAG 60.353 54.545 0.00 0.00 34.48 1.73
4118 4976 3.100671 GGGAGCCGTCTATGAATAGGAT 58.899 50.000 0.00 0.00 0.00 3.24
4119 4977 3.118956 GGGAGCCGTCTATGAATAGGATG 60.119 52.174 0.00 0.00 0.00 3.51
4121 4979 2.834549 AGCCGTCTATGAATAGGATGGG 59.165 50.000 0.00 0.00 0.00 4.00
4123 4981 2.093447 CCGTCTATGAATAGGATGGGCC 60.093 54.545 0.00 0.00 0.00 5.80
4125 4983 1.555075 TCTATGAATAGGATGGGCCGC 59.445 52.381 0.00 0.00 43.43 6.53
4128 4986 0.179020 TGAATAGGATGGGCCGCAAG 60.179 55.000 0.00 0.00 43.43 4.01
4130 4988 0.179018 AATAGGATGGGCCGCAAGTC 60.179 55.000 0.00 0.00 43.43 3.01
4138 4997 2.029844 GGCCGCAAGTCACTGACTC 61.030 63.158 12.22 0.31 42.59 3.36
4158 5063 1.075374 CTTGGAGGGGAATTGTGTGGA 59.925 52.381 0.00 0.00 0.00 4.02
4171 5076 2.054021 TGTGTGGACTCTTGGGAATCA 58.946 47.619 0.00 0.00 0.00 2.57
4181 5086 2.148723 TTGGGAATCATGGGCGTGGT 62.149 55.000 0.00 0.00 0.00 4.16
4185 5090 1.134220 GGAATCATGGGCGTGGTAAGA 60.134 52.381 0.00 0.00 0.00 2.10
4187 5092 2.799126 ATCATGGGCGTGGTAAGAAA 57.201 45.000 0.00 0.00 0.00 2.52
4189 5094 2.432444 TCATGGGCGTGGTAAGAAAAG 58.568 47.619 0.00 0.00 0.00 2.27
4192 5097 2.933573 TGGGCGTGGTAAGAAAAGAAA 58.066 42.857 0.00 0.00 0.00 2.52
4193 5098 3.492337 TGGGCGTGGTAAGAAAAGAAAT 58.508 40.909 0.00 0.00 0.00 2.17
4194 5099 3.254657 TGGGCGTGGTAAGAAAAGAAATG 59.745 43.478 0.00 0.00 0.00 2.32
4195 5100 3.242518 GGCGTGGTAAGAAAAGAAATGC 58.757 45.455 0.00 0.00 0.00 3.56
4197 5102 4.546570 GCGTGGTAAGAAAAGAAATGCTT 58.453 39.130 0.00 0.00 38.88 3.91
4198 5103 4.382754 GCGTGGTAAGAAAAGAAATGCTTG 59.617 41.667 0.00 0.00 36.80 4.01
4199 5104 4.917415 CGTGGTAAGAAAAGAAATGCTTGG 59.083 41.667 0.00 0.00 36.80 3.61
4200 5105 5.507315 CGTGGTAAGAAAAGAAATGCTTGGT 60.507 40.000 0.00 0.00 36.80 3.67
4261 5170 4.070716 GAGGGACATGGAATTATGCAGAG 58.929 47.826 0.00 0.00 0.00 3.35
4286 5208 2.747822 GCGCATGAGCAGTGAGGTG 61.748 63.158 17.16 0.00 42.27 4.00
4324 5251 0.179240 GCGTTGCACATGAGAGAACG 60.179 55.000 17.50 17.50 41.72 3.95
4329 5256 0.320771 GCACATGAGAGAACGTGGGT 60.321 55.000 0.00 0.00 33.29 4.51
4330 5257 1.432514 CACATGAGAGAACGTGGGTG 58.567 55.000 0.00 0.00 0.00 4.61
4342 5269 1.228459 GTGGGTGGGTGAAGGGAAC 60.228 63.158 0.00 0.00 0.00 3.62
4381 5308 3.228188 TGTCCACTTCAATTTGGCTCT 57.772 42.857 0.00 0.00 32.37 4.09
4384 5311 4.037923 TGTCCACTTCAATTTGGCTCTTTC 59.962 41.667 0.00 0.00 32.37 2.62
4385 5312 3.573967 TCCACTTCAATTTGGCTCTTTCC 59.426 43.478 0.00 0.00 32.37 3.13
4386 5313 3.306294 CCACTTCAATTTGGCTCTTTCCC 60.306 47.826 0.00 0.00 0.00 3.97
4387 5314 3.575687 CACTTCAATTTGGCTCTTTCCCT 59.424 43.478 0.00 0.00 0.00 4.20
4388 5315 4.039609 CACTTCAATTTGGCTCTTTCCCTT 59.960 41.667 0.00 0.00 0.00 3.95
4389 5316 4.655649 ACTTCAATTTGGCTCTTTCCCTTT 59.344 37.500 0.00 0.00 0.00 3.11
4392 5319 4.901250 TCAATTTGGCTCTTTCCCTTTTCT 59.099 37.500 0.00 0.00 0.00 2.52
4393 5320 5.011023 TCAATTTGGCTCTTTCCCTTTTCTC 59.989 40.000 0.00 0.00 0.00 2.87
4394 5321 3.884037 TTGGCTCTTTCCCTTTTCTCT 57.116 42.857 0.00 0.00 0.00 3.10
4396 5323 4.993705 TGGCTCTTTCCCTTTTCTCTAA 57.006 40.909 0.00 0.00 0.00 2.10
4397 5324 5.520748 TGGCTCTTTCCCTTTTCTCTAAT 57.479 39.130 0.00 0.00 0.00 1.73
4398 5325 5.501156 TGGCTCTTTCCCTTTTCTCTAATC 58.499 41.667 0.00 0.00 0.00 1.75
4400 5327 5.339612 GGCTCTTTCCCTTTTCTCTAATCCT 60.340 44.000 0.00 0.00 0.00 3.24
4401 5328 5.820423 GCTCTTTCCCTTTTCTCTAATCCTC 59.180 44.000 0.00 0.00 0.00 3.71
4402 5329 5.978814 TCTTTCCCTTTTCTCTAATCCTCG 58.021 41.667 0.00 0.00 0.00 4.63
4403 5330 5.484290 TCTTTCCCTTTTCTCTAATCCTCGT 59.516 40.000 0.00 0.00 0.00 4.18
4404 5331 4.737855 TCCCTTTTCTCTAATCCTCGTG 57.262 45.455 0.00 0.00 0.00 4.35
4405 5332 4.350245 TCCCTTTTCTCTAATCCTCGTGA 58.650 43.478 0.00 0.00 0.00 4.35
4407 5334 4.402793 CCCTTTTCTCTAATCCTCGTGAGA 59.597 45.833 0.00 0.00 39.12 3.27
4409 5336 6.039616 CCTTTTCTCTAATCCTCGTGAGAAG 58.960 44.000 0.00 0.00 43.51 2.85
4411 5338 7.411486 TTTTCTCTAATCCTCGTGAGAAGAT 57.589 36.000 0.00 0.00 42.86 2.40
4413 5340 4.277174 TCTCTAATCCTCGTGAGAAGATGC 59.723 45.833 0.00 0.00 40.27 3.91
4414 5341 3.954258 TCTAATCCTCGTGAGAAGATGCA 59.046 43.478 0.00 0.00 40.27 3.96
4415 5342 3.616956 AATCCTCGTGAGAAGATGCAA 57.383 42.857 0.00 0.00 40.27 4.08
4416 5343 3.616956 ATCCTCGTGAGAAGATGCAAA 57.383 42.857 0.00 0.00 39.70 3.68
4417 5344 3.401033 TCCTCGTGAGAAGATGCAAAA 57.599 42.857 0.00 0.00 41.32 2.44
4436 5363 5.882553 CAAAAAGCTTTGCACATCCTTTTT 58.117 33.333 13.54 15.14 42.88 1.94
4437 5364 5.488645 AAAAGCTTTGCACATCCTTTTTG 57.511 34.783 13.54 0.00 33.37 2.44
4440 5367 5.275067 AGCTTTGCACATCCTTTTTGTAA 57.725 34.783 0.00 0.00 0.00 2.41
4441 5368 5.857268 AGCTTTGCACATCCTTTTTGTAAT 58.143 33.333 0.00 0.00 0.00 1.89
4446 5373 9.437045 CTTTGCACATCCTTTTTGTAATTTTTC 57.563 29.630 0.00 0.00 0.00 2.29
4447 5374 8.729805 TTGCACATCCTTTTTGTAATTTTTCT 57.270 26.923 0.00 0.00 0.00 2.52
4448 5375 8.364129 TGCACATCCTTTTTGTAATTTTTCTC 57.636 30.769 0.00 0.00 0.00 2.87
4449 5376 8.203485 TGCACATCCTTTTTGTAATTTTTCTCT 58.797 29.630 0.00 0.00 0.00 3.10
4480 5425 4.891992 TTTTTGGGTGAGGTGTTTTTCA 57.108 36.364 0.00 0.00 0.00 2.69
4481 5426 4.464069 TTTTGGGTGAGGTGTTTTTCAG 57.536 40.909 0.00 0.00 0.00 3.02
4482 5427 2.818751 TGGGTGAGGTGTTTTTCAGT 57.181 45.000 0.00 0.00 0.00 3.41
4483 5428 3.094484 TGGGTGAGGTGTTTTTCAGTT 57.906 42.857 0.00 0.00 0.00 3.16
4484 5429 2.757868 TGGGTGAGGTGTTTTTCAGTTG 59.242 45.455 0.00 0.00 0.00 3.16
4485 5430 2.481276 GGGTGAGGTGTTTTTCAGTTGC 60.481 50.000 0.00 0.00 0.00 4.17
4486 5431 2.427095 GGTGAGGTGTTTTTCAGTTGCT 59.573 45.455 0.00 0.00 0.00 3.91
4487 5432 3.489229 GGTGAGGTGTTTTTCAGTTGCTC 60.489 47.826 0.00 0.00 0.00 4.26
4488 5433 2.354510 TGAGGTGTTTTTCAGTTGCTCG 59.645 45.455 0.00 0.00 0.00 5.03
4490 5435 2.097466 AGGTGTTTTTCAGTTGCTCGTG 59.903 45.455 0.00 0.00 0.00 4.35
4492 5437 3.498082 GTGTTTTTCAGTTGCTCGTGTT 58.502 40.909 0.00 0.00 0.00 3.32
4493 5438 3.917985 GTGTTTTTCAGTTGCTCGTGTTT 59.082 39.130 0.00 0.00 0.00 2.83
4495 5440 5.569823 GTGTTTTTCAGTTGCTCGTGTTTTA 59.430 36.000 0.00 0.00 0.00 1.52
4496 5441 6.088350 GTGTTTTTCAGTTGCTCGTGTTTTAA 59.912 34.615 0.00 0.00 0.00 1.52
4498 5443 3.955771 TCAGTTGCTCGTGTTTTAACC 57.044 42.857 0.00 0.00 0.00 2.85
4500 5445 2.356382 CAGTTGCTCGTGTTTTAACCCA 59.644 45.455 0.00 0.00 0.00 4.51
4507 5480 2.879646 TCGTGTTTTAACCCACATGGAC 59.120 45.455 0.00 0.00 37.39 4.02
4528 5501 6.667848 TGGACCATGATCTGAAACTAGTAAGA 59.332 38.462 0.00 0.24 0.00 2.10
4540 5513 2.962421 ACTAGTAAGATCCTCTGGCTGC 59.038 50.000 0.00 0.00 0.00 5.25
4584 5557 3.913763 CGCAGACACCACACATATTTTTG 59.086 43.478 0.00 0.00 0.00 2.44
4634 5622 3.159353 CAATGACATGGACATTGCCAG 57.841 47.619 24.08 9.95 44.67 4.85
4650 5638 1.133598 GCCAGGTTACCGGTAAAATGC 59.866 52.381 28.11 22.07 0.00 3.56
4661 5730 5.283294 ACCGGTAAAATGCAAAACTGTTAC 58.717 37.500 4.49 0.00 0.00 2.50
4714 6842 3.694566 AGAAGCGTTTTGTTTCCAAGTCT 59.305 39.130 0.00 0.00 38.46 3.24
4812 7281 5.705397 AGGACATGAAGAATCAAGGATGA 57.295 39.130 0.00 0.00 39.49 2.92
4894 7369 4.079253 GACAATTTAAGCAAGGGAGGTCA 58.921 43.478 0.00 0.00 0.00 4.02
4897 7372 4.591321 ATTTAAGCAAGGGAGGTCATGA 57.409 40.909 0.00 0.00 0.00 3.07
4898 7373 4.380843 TTTAAGCAAGGGAGGTCATGAA 57.619 40.909 0.00 0.00 0.00 2.57
4899 7374 2.503895 AAGCAAGGGAGGTCATGAAG 57.496 50.000 0.00 0.00 0.00 3.02
4902 7377 2.579860 AGCAAGGGAGGTCATGAAGAAT 59.420 45.455 0.00 0.00 0.00 2.40
4903 7378 2.948315 GCAAGGGAGGTCATGAAGAATC 59.052 50.000 0.00 0.00 0.00 2.52
4905 7380 4.592942 CAAGGGAGGTCATGAAGAATCAA 58.407 43.478 0.00 0.00 39.49 2.57
4906 7381 4.500499 AGGGAGGTCATGAAGAATCAAG 57.500 45.455 0.00 0.00 39.49 3.02
4907 7382 3.201708 AGGGAGGTCATGAAGAATCAAGG 59.798 47.826 0.00 0.00 39.49 3.61
4943 7469 0.252239 AGCCAAATTTGACCTCCCCC 60.252 55.000 19.86 0.00 0.00 5.40
4944 7470 0.252239 GCCAAATTTGACCTCCCCCT 60.252 55.000 19.86 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.945191 TGATGATGATGCCAACTTTTGTCTA 59.055 36.000 0.00 0.00 0.00 2.59
6 7 4.860907 GTGATGATGATGCCAACTTTTGTC 59.139 41.667 0.00 0.00 0.00 3.18
18 19 6.997239 TCTTTTTCCTCTGTGATGATGATG 57.003 37.500 0.00 0.00 0.00 3.07
44 46 4.567159 GGTGATCATGGTCGAGTAAACTTC 59.433 45.833 0.00 0.00 0.00 3.01
62 64 0.104304 GCGGTTCCTACGATGGTGAT 59.896 55.000 0.00 0.00 0.00 3.06
67 69 2.279252 CGGGCGGTTCCTACGATG 60.279 66.667 0.00 0.00 34.39 3.84
71 73 0.177373 AAATCTCGGGCGGTTCCTAC 59.823 55.000 0.00 0.00 34.39 3.18
75 77 0.108329 TCTCAAATCTCGGGCGGTTC 60.108 55.000 0.00 0.00 0.00 3.62
134 140 5.309323 TGCCTAAACTAATGTGATTGTGC 57.691 39.130 0.00 0.00 0.00 4.57
135 141 5.415701 ACCTGCCTAAACTAATGTGATTGTG 59.584 40.000 0.00 0.00 0.00 3.33
142 148 7.281549 CCGTTATTTACCTGCCTAAACTAATGT 59.718 37.037 0.00 0.00 0.00 2.71
152 158 0.106868 GGCCCGTTATTTACCTGCCT 60.107 55.000 0.00 0.00 37.11 4.75
233 239 9.131791 GCTCCCTCCTTTTATCACATAAATAAA 57.868 33.333 0.00 0.00 34.92 1.40
234 240 7.724061 GGCTCCCTCCTTTTATCACATAAATAA 59.276 37.037 0.00 0.00 34.92 1.40
236 242 6.071320 GGCTCCCTCCTTTTATCACATAAAT 58.929 40.000 0.00 0.00 34.92 1.40
239 245 4.044308 TGGCTCCCTCCTTTTATCACATA 58.956 43.478 0.00 0.00 0.00 2.29
240 246 2.852449 TGGCTCCCTCCTTTTATCACAT 59.148 45.455 0.00 0.00 0.00 3.21
243 249 4.396357 TTTTGGCTCCCTCCTTTTATCA 57.604 40.909 0.00 0.00 0.00 2.15
244 250 4.100035 CCATTTTGGCTCCCTCCTTTTATC 59.900 45.833 0.00 0.00 0.00 1.75
246 252 3.440127 CCATTTTGGCTCCCTCCTTTTA 58.560 45.455 0.00 0.00 0.00 1.52
247 253 2.259917 CCATTTTGGCTCCCTCCTTTT 58.740 47.619 0.00 0.00 0.00 2.27
248 254 1.553184 CCCATTTTGGCTCCCTCCTTT 60.553 52.381 0.00 0.00 35.79 3.11
249 255 0.041684 CCCATTTTGGCTCCCTCCTT 59.958 55.000 0.00 0.00 35.79 3.36
251 257 4.362479 CCCATTTTGGCTCCCTCC 57.638 61.111 0.00 0.00 35.79 4.30
262 269 5.474876 GCTAGAGTTAATAGCATGCCCATTT 59.525 40.000 15.66 5.69 44.14 2.32
291 298 0.166814 GATTCAGCACCGTGTCTTGC 59.833 55.000 0.00 0.00 39.16 4.01
293 300 2.254546 TTGATTCAGCACCGTGTCTT 57.745 45.000 0.00 0.00 0.00 3.01
294 301 2.289631 TGATTGATTCAGCACCGTGTCT 60.290 45.455 0.00 0.00 0.00 3.41
295 302 2.076100 TGATTGATTCAGCACCGTGTC 58.924 47.619 0.00 0.00 0.00 3.67
296 303 2.183478 TGATTGATTCAGCACCGTGT 57.817 45.000 0.00 0.00 0.00 4.49
303 310 8.457261 ACTTACTTTCTTGATGATTGATTCAGC 58.543 33.333 0.00 0.00 41.25 4.26
315 322 9.713713 GGTTTCTCTTCTACTTACTTTCTTGAT 57.286 33.333 0.00 0.00 0.00 2.57
316 323 7.866393 CGGTTTCTCTTCTACTTACTTTCTTGA 59.134 37.037 0.00 0.00 0.00 3.02
317 324 7.359347 GCGGTTTCTCTTCTACTTACTTTCTTG 60.359 40.741 0.00 0.00 0.00 3.02
318 325 6.645827 GCGGTTTCTCTTCTACTTACTTTCTT 59.354 38.462 0.00 0.00 0.00 2.52
319 326 6.157904 GCGGTTTCTCTTCTACTTACTTTCT 58.842 40.000 0.00 0.00 0.00 2.52
320 327 5.060693 CGCGGTTTCTCTTCTACTTACTTTC 59.939 44.000 0.00 0.00 0.00 2.62
321 328 4.922103 CGCGGTTTCTCTTCTACTTACTTT 59.078 41.667 0.00 0.00 0.00 2.66
322 329 4.022503 ACGCGGTTTCTCTTCTACTTACTT 60.023 41.667 12.47 0.00 0.00 2.24
323 330 3.505293 ACGCGGTTTCTCTTCTACTTACT 59.495 43.478 12.47 0.00 0.00 2.24
324 331 3.607209 CACGCGGTTTCTCTTCTACTTAC 59.393 47.826 12.47 0.00 0.00 2.34
325 332 3.366679 CCACGCGGTTTCTCTTCTACTTA 60.367 47.826 12.47 0.00 0.00 2.24
326 333 2.609737 CCACGCGGTTTCTCTTCTACTT 60.610 50.000 12.47 0.00 0.00 2.24
327 334 1.067776 CCACGCGGTTTCTCTTCTACT 60.068 52.381 12.47 0.00 0.00 2.57
328 335 1.347320 CCACGCGGTTTCTCTTCTAC 58.653 55.000 12.47 0.00 0.00 2.59
329 336 0.389426 GCCACGCGGTTTCTCTTCTA 60.389 55.000 12.47 0.00 33.28 2.10
330 337 1.668151 GCCACGCGGTTTCTCTTCT 60.668 57.895 12.47 0.00 33.28 2.85
331 338 1.503818 TTGCCACGCGGTTTCTCTTC 61.504 55.000 12.47 0.00 33.28 2.87
347 354 2.301346 CCCTCTCTCTCTCTCTCTTGC 58.699 57.143 0.00 0.00 0.00 4.01
355 362 4.349365 TCTTTTCTTCCCCTCTCTCTCTC 58.651 47.826 0.00 0.00 0.00 3.20
356 363 4.412060 TCTTTTCTTCCCCTCTCTCTCT 57.588 45.455 0.00 0.00 0.00 3.10
357 364 4.775253 TCTTCTTTTCTTCCCCTCTCTCTC 59.225 45.833 0.00 0.00 0.00 3.20
358 365 4.757692 TCTTCTTTTCTTCCCCTCTCTCT 58.242 43.478 0.00 0.00 0.00 3.10
359 366 4.775253 TCTCTTCTTTTCTTCCCCTCTCTC 59.225 45.833 0.00 0.00 0.00 3.20
362 369 5.280934 CCATTCTCTTCTTTTCTTCCCCTCT 60.281 44.000 0.00 0.00 0.00 3.69
363 370 4.946772 CCATTCTCTTCTTTTCTTCCCCTC 59.053 45.833 0.00 0.00 0.00 4.30
364 371 4.603610 TCCATTCTCTTCTTTTCTTCCCCT 59.396 41.667 0.00 0.00 0.00 4.79
365 372 4.923415 TCCATTCTCTTCTTTTCTTCCCC 58.077 43.478 0.00 0.00 0.00 4.81
366 373 6.491745 ACTTTCCATTCTCTTCTTTTCTTCCC 59.508 38.462 0.00 0.00 0.00 3.97
367 374 7.013750 ACACTTTCCATTCTCTTCTTTTCTTCC 59.986 37.037 0.00 0.00 0.00 3.46
368 375 7.935520 ACACTTTCCATTCTCTTCTTTTCTTC 58.064 34.615 0.00 0.00 0.00 2.87
369 376 7.888250 ACACTTTCCATTCTCTTCTTTTCTT 57.112 32.000 0.00 0.00 0.00 2.52
411 437 5.105756 CCACCGCTTTCCATTCTCTAATTTT 60.106 40.000 0.00 0.00 0.00 1.82
430 456 3.074412 ACTTTTATCAGCTTGACCACCG 58.926 45.455 0.00 0.00 0.00 4.94
450 477 1.157585 GCAGAGGAAAAAGGACCGAC 58.842 55.000 0.00 0.00 0.00 4.79
451 478 1.002087 GAGCAGAGGAAAAAGGACCGA 59.998 52.381 0.00 0.00 0.00 4.69
452 479 1.270839 TGAGCAGAGGAAAAAGGACCG 60.271 52.381 0.00 0.00 0.00 4.79
453 480 2.224646 ACTGAGCAGAGGAAAAAGGACC 60.225 50.000 4.21 0.00 0.00 4.46
454 481 3.133141 ACTGAGCAGAGGAAAAAGGAC 57.867 47.619 4.21 0.00 0.00 3.85
455 482 4.160329 TCTACTGAGCAGAGGAAAAAGGA 58.840 43.478 4.21 0.00 0.00 3.36
456 483 4.020662 ACTCTACTGAGCAGAGGAAAAAGG 60.021 45.833 13.90 0.00 43.22 3.11
457 484 5.146010 ACTCTACTGAGCAGAGGAAAAAG 57.854 43.478 13.90 0.00 43.22 2.27
458 485 6.010850 TCTACTCTACTGAGCAGAGGAAAAA 58.989 40.000 13.90 0.00 43.22 1.94
459 486 5.571285 TCTACTCTACTGAGCAGAGGAAAA 58.429 41.667 13.90 0.00 43.22 2.29
460 487 5.180810 TCTACTCTACTGAGCAGAGGAAA 57.819 43.478 13.90 0.00 43.22 3.13
461 488 4.846168 TCTACTCTACTGAGCAGAGGAA 57.154 45.455 13.90 1.45 43.22 3.36
472 528 3.369681 CCACTCGTCCACTCTACTCTACT 60.370 52.174 0.00 0.00 0.00 2.57
474 530 2.836372 TCCACTCGTCCACTCTACTCTA 59.164 50.000 0.00 0.00 0.00 2.43
475 531 1.629353 TCCACTCGTCCACTCTACTCT 59.371 52.381 0.00 0.00 0.00 3.24
476 532 2.110901 TCCACTCGTCCACTCTACTC 57.889 55.000 0.00 0.00 0.00 2.59
484 540 0.895530 GACTGGATTCCACTCGTCCA 59.104 55.000 0.00 0.00 39.61 4.02
491 547 1.471676 CGTAGCTGGACTGGATTCCAC 60.472 57.143 0.00 0.00 41.00 4.02
494 550 1.067821 CTCCGTAGCTGGACTGGATTC 59.932 57.143 0.00 0.00 33.48 2.52
495 551 1.115467 CTCCGTAGCTGGACTGGATT 58.885 55.000 0.00 0.00 33.48 3.01
496 552 0.757188 CCTCCGTAGCTGGACTGGAT 60.757 60.000 0.00 0.00 33.48 3.41
497 553 1.379977 CCTCCGTAGCTGGACTGGA 60.380 63.158 0.00 0.00 33.48 3.86
498 554 3.082579 GCCTCCGTAGCTGGACTGG 62.083 68.421 0.00 0.00 33.48 4.00
499 555 2.290122 CTGCCTCCGTAGCTGGACTG 62.290 65.000 0.00 0.00 33.48 3.51
501 557 2.496817 CTGCCTCCGTAGCTGGAC 59.503 66.667 0.00 0.00 33.48 4.02
502 558 3.461773 GCTGCCTCCGTAGCTGGA 61.462 66.667 0.00 0.00 43.74 3.86
504 560 1.812922 CTTGCTGCCTCCGTAGCTG 60.813 63.158 0.00 0.00 46.89 4.24
505 561 1.333636 ATCTTGCTGCCTCCGTAGCT 61.334 55.000 0.00 0.00 46.89 3.32
506 562 0.878086 GATCTTGCTGCCTCCGTAGC 60.878 60.000 0.00 0.00 46.94 3.58
507 563 0.461548 TGATCTTGCTGCCTCCGTAG 59.538 55.000 0.00 0.00 0.00 3.51
508 564 0.175760 GTGATCTTGCTGCCTCCGTA 59.824 55.000 0.00 0.00 0.00 4.02
509 565 1.078848 GTGATCTTGCTGCCTCCGT 60.079 57.895 0.00 0.00 0.00 4.69
510 566 2.169789 CGTGATCTTGCTGCCTCCG 61.170 63.158 0.00 0.00 0.00 4.63
512 568 1.817099 CCCGTGATCTTGCTGCCTC 60.817 63.158 0.00 0.00 0.00 4.70
539 654 2.780693 CTCCCTCCCTCTCACCCA 59.219 66.667 0.00 0.00 0.00 4.51
541 656 1.075600 CTCCTCCCTCCCTCTCACC 60.076 68.421 0.00 0.00 0.00 4.02
543 658 0.633921 CTTCTCCTCCCTCCCTCTCA 59.366 60.000 0.00 0.00 0.00 3.27
545 660 1.598856 CCCTTCTCCTCCCTCCCTCT 61.599 65.000 0.00 0.00 0.00 3.69
546 661 1.074850 CCCTTCTCCTCCCTCCCTC 60.075 68.421 0.00 0.00 0.00 4.30
547 662 2.652113 CCCCTTCTCCTCCCTCCCT 61.652 68.421 0.00 0.00 0.00 4.20
548 663 2.040359 CCCCTTCTCCTCCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
549 664 0.029577 ATTCCCCTTCTCCTCCCTCC 60.030 60.000 0.00 0.00 0.00 4.30
550 665 1.900254 AATTCCCCTTCTCCTCCCTC 58.100 55.000 0.00 0.00 0.00 4.30
551 666 2.385263 AAATTCCCCTTCTCCTCCCT 57.615 50.000 0.00 0.00 0.00 4.20
552 667 3.099905 CAAAAATTCCCCTTCTCCTCCC 58.900 50.000 0.00 0.00 0.00 4.30
553 668 3.099905 CCAAAAATTCCCCTTCTCCTCC 58.900 50.000 0.00 0.00 0.00 4.30
554 669 3.779444 ACCAAAAATTCCCCTTCTCCTC 58.221 45.455 0.00 0.00 0.00 3.71
556 671 4.974645 AAACCAAAAATTCCCCTTCTCC 57.025 40.909 0.00 0.00 0.00 3.71
557 672 5.778241 TCCTAAACCAAAAATTCCCCTTCTC 59.222 40.000 0.00 0.00 0.00 2.87
558 673 5.722290 TCCTAAACCAAAAATTCCCCTTCT 58.278 37.500 0.00 0.00 0.00 2.85
560 675 6.617784 TCTTTCCTAAACCAAAAATTCCCCTT 59.382 34.615 0.00 0.00 0.00 3.95
561 676 6.147473 TCTTTCCTAAACCAAAAATTCCCCT 58.853 36.000 0.00 0.00 0.00 4.79
562 677 6.428083 TCTTTCCTAAACCAAAAATTCCCC 57.572 37.500 0.00 0.00 0.00 4.81
563 678 8.918202 AATTCTTTCCTAAACCAAAAATTCCC 57.082 30.769 0.00 0.00 0.00 3.97
593 708 2.602211 GCATGAGACGAGATGAACAGTG 59.398 50.000 0.00 0.00 0.00 3.66
594 709 2.495270 AGCATGAGACGAGATGAACAGT 59.505 45.455 0.00 0.00 0.00 3.55
595 710 3.162202 AGCATGAGACGAGATGAACAG 57.838 47.619 0.00 0.00 0.00 3.16
596 711 3.256558 CAAGCATGAGACGAGATGAACA 58.743 45.455 0.00 0.00 0.00 3.18
597 712 3.257393 ACAAGCATGAGACGAGATGAAC 58.743 45.455 0.00 0.00 0.00 3.18
598 713 3.599730 ACAAGCATGAGACGAGATGAA 57.400 42.857 0.00 0.00 0.00 2.57
599 714 3.599730 AACAAGCATGAGACGAGATGA 57.400 42.857 0.00 0.00 0.00 2.92
600 715 3.931468 AGAAACAAGCATGAGACGAGATG 59.069 43.478 0.00 0.00 0.00 2.90
601 716 4.081752 AGAGAAACAAGCATGAGACGAGAT 60.082 41.667 0.00 0.00 0.00 2.75
602 717 3.256879 AGAGAAACAAGCATGAGACGAGA 59.743 43.478 0.00 0.00 0.00 4.04
603 718 3.583806 AGAGAAACAAGCATGAGACGAG 58.416 45.455 0.00 0.00 0.00 4.18
614 774 1.194772 GCGGACGGAAAGAGAAACAAG 59.805 52.381 0.00 0.00 0.00 3.16
630 790 3.393106 GGGGAAGGTAACCGCGGA 61.393 66.667 35.90 7.50 37.17 5.54
631 791 2.864378 GAAGGGGAAGGTAACCGCGG 62.864 65.000 26.86 26.86 43.59 6.46
632 792 1.449070 GAAGGGGAAGGTAACCGCG 60.449 63.158 0.00 0.00 43.59 6.46
633 793 1.077930 GGAAGGGGAAGGTAACCGC 60.078 63.158 0.00 0.00 40.04 5.68
634 794 0.912968 AGGGAAGGGGAAGGTAACCG 60.913 60.000 0.00 0.00 37.17 4.44
635 795 0.624254 CAGGGAAGGGGAAGGTAACC 59.376 60.000 0.00 0.00 37.17 2.85
636 796 0.034380 GCAGGGAAGGGGAAGGTAAC 60.034 60.000 0.00 0.00 0.00 2.50
637 797 0.476808 TGCAGGGAAGGGGAAGGTAA 60.477 55.000 0.00 0.00 0.00 2.85
638 798 0.253630 ATGCAGGGAAGGGGAAGGTA 60.254 55.000 0.00 0.00 0.00 3.08
639 799 1.544917 ATGCAGGGAAGGGGAAGGT 60.545 57.895 0.00 0.00 0.00 3.50
640 800 1.228510 GATGCAGGGAAGGGGAAGG 59.771 63.158 0.00 0.00 0.00 3.46
641 801 1.228510 GGATGCAGGGAAGGGGAAG 59.771 63.158 0.00 0.00 0.00 3.46
642 802 2.316586 GGGATGCAGGGAAGGGGAA 61.317 63.158 0.00 0.00 0.00 3.97
643 803 2.696125 GGGATGCAGGGAAGGGGA 60.696 66.667 0.00 0.00 0.00 4.81
644 804 3.825623 GGGGATGCAGGGAAGGGG 61.826 72.222 0.00 0.00 0.00 4.79
645 805 4.195334 CGGGGATGCAGGGAAGGG 62.195 72.222 0.00 0.00 0.00 3.95
656 816 3.809013 ATTGAAGGCGGCGGGGAT 61.809 61.111 9.78 0.00 0.00 3.85
657 817 4.794648 CATTGAAGGCGGCGGGGA 62.795 66.667 9.78 0.00 0.00 4.81
662 822 4.133796 GGTGGCATTGAAGGCGGC 62.134 66.667 0.00 0.00 36.77 6.53
676 836 1.845809 GCAGTGAAAGAGCGGTGGTG 61.846 60.000 0.00 0.00 0.00 4.17
677 837 1.598130 GCAGTGAAAGAGCGGTGGT 60.598 57.895 0.00 0.00 0.00 4.16
678 838 1.302033 AGCAGTGAAAGAGCGGTGG 60.302 57.895 0.00 0.00 0.00 4.61
679 839 1.572085 CCAGCAGTGAAAGAGCGGTG 61.572 60.000 0.00 0.00 0.00 4.94
680 840 1.302033 CCAGCAGTGAAAGAGCGGT 60.302 57.895 0.00 0.00 0.00 5.68
681 841 0.392193 ATCCAGCAGTGAAAGAGCGG 60.392 55.000 0.00 0.00 0.00 5.52
682 842 1.005340 GATCCAGCAGTGAAAGAGCG 58.995 55.000 0.00 0.00 0.00 5.03
683 843 2.008329 CAGATCCAGCAGTGAAAGAGC 58.992 52.381 0.00 0.00 0.00 4.09
684 844 3.606595 TCAGATCCAGCAGTGAAAGAG 57.393 47.619 0.00 0.00 0.00 2.85
685 845 3.773667 AGATCAGATCCAGCAGTGAAAGA 59.226 43.478 6.80 0.00 0.00 2.52
686 846 4.121317 GAGATCAGATCCAGCAGTGAAAG 58.879 47.826 6.80 0.00 0.00 2.62
687 847 3.118482 GGAGATCAGATCCAGCAGTGAAA 60.118 47.826 6.80 0.00 36.79 2.69
708 868 2.167487 GGAACAAGGTAGCTCTCTCAGG 59.833 54.545 0.00 0.00 0.00 3.86
709 869 2.828520 TGGAACAAGGTAGCTCTCTCAG 59.171 50.000 0.00 0.00 31.92 3.35
710 870 2.828520 CTGGAACAAGGTAGCTCTCTCA 59.171 50.000 0.00 0.00 38.70 3.27
711 871 2.418060 GCTGGAACAAGGTAGCTCTCTC 60.418 54.545 0.00 0.00 38.70 3.20
712 872 1.552792 GCTGGAACAAGGTAGCTCTCT 59.447 52.381 0.00 0.00 38.70 3.10
713 873 1.552792 AGCTGGAACAAGGTAGCTCTC 59.447 52.381 0.00 0.00 42.45 3.20
714 874 1.277557 CAGCTGGAACAAGGTAGCTCT 59.722 52.381 5.57 0.00 44.11 4.09
715 875 1.002544 ACAGCTGGAACAAGGTAGCTC 59.997 52.381 19.93 0.00 44.11 4.09
716 876 1.059913 ACAGCTGGAACAAGGTAGCT 58.940 50.000 19.93 0.00 46.66 3.32
717 877 1.897560 AACAGCTGGAACAAGGTAGC 58.102 50.000 19.93 0.00 38.70 3.58
775 1010 3.051392 GCAAAAGATCCCCGCACGG 62.051 63.158 1.02 1.02 0.00 4.94
777 1012 1.657751 GGAGCAAAAGATCCCCGCAC 61.658 60.000 0.00 0.00 0.00 5.34
778 1013 1.378514 GGAGCAAAAGATCCCCGCA 60.379 57.895 0.00 0.00 0.00 5.69
779 1014 1.378514 TGGAGCAAAAGATCCCCGC 60.379 57.895 0.00 0.00 34.47 6.13
801 1045 0.596577 GCAAGAAGAAACCCGAACCC 59.403 55.000 0.00 0.00 0.00 4.11
831 1078 1.676014 CCTACTGCCTCAAGAAACGGG 60.676 57.143 0.00 0.00 0.00 5.28
832 1079 1.275291 TCCTACTGCCTCAAGAAACGG 59.725 52.381 0.00 0.00 0.00 4.44
833 1080 2.611518 CTCCTACTGCCTCAAGAAACG 58.388 52.381 0.00 0.00 0.00 3.60
834 1081 2.567615 TCCTCCTACTGCCTCAAGAAAC 59.432 50.000 0.00 0.00 0.00 2.78
835 1082 2.834549 CTCCTCCTACTGCCTCAAGAAA 59.165 50.000 0.00 0.00 0.00 2.52
838 1085 1.118838 CCTCCTCCTACTGCCTCAAG 58.881 60.000 0.00 0.00 0.00 3.02
839 1086 0.710588 TCCTCCTCCTACTGCCTCAA 59.289 55.000 0.00 0.00 0.00 3.02
840 1087 0.260230 CTCCTCCTCCTACTGCCTCA 59.740 60.000 0.00 0.00 0.00 3.86
842 1089 1.623625 CCTCCTCCTCCTACTGCCT 59.376 63.158 0.00 0.00 0.00 4.75
938 1236 3.888930 CCTTGTTGTTGGTGTTGGATACT 59.111 43.478 0.00 0.00 37.61 2.12
962 1260 1.375652 CTAGCACAGCAGCAGCAGT 60.376 57.895 3.17 0.00 45.49 4.40
970 1271 0.397114 TAGCCTAGCCTAGCACAGCA 60.397 55.000 0.00 0.00 0.00 4.41
987 1288 0.769873 AGGCCATGATTGGAGGCTAG 59.230 55.000 5.01 0.00 46.92 3.42
988 1289 0.767375 GAGGCCATGATTGGAGGCTA 59.233 55.000 5.01 0.00 46.92 3.93
989 1290 1.535685 GAGGCCATGATTGGAGGCT 59.464 57.895 5.01 0.00 46.92 4.58
990 1291 1.530183 GGAGGCCATGATTGGAGGC 60.530 63.158 5.01 0.00 46.92 4.70
991 1292 0.110104 GAGGAGGCCATGATTGGAGG 59.890 60.000 5.01 0.00 46.92 4.30
1382 1698 1.518903 GCTTGGTGGTGGAGAAGTGC 61.519 60.000 0.00 0.00 0.00 4.40
1546 1862 1.345715 GGGGTGGTGGGATCTACAGG 61.346 65.000 0.00 0.00 0.00 4.00
1548 1864 1.020462 TAGGGGTGGTGGGATCTACA 58.980 55.000 0.00 0.00 0.00 2.74
1549 1865 1.062352 AGTAGGGGTGGTGGGATCTAC 60.062 57.143 0.00 0.00 0.00 2.59
1550 1866 1.062428 CAGTAGGGGTGGTGGGATCTA 60.062 57.143 0.00 0.00 0.00 1.98
1551 1867 0.326618 CAGTAGGGGTGGTGGGATCT 60.327 60.000 0.00 0.00 0.00 2.75
1552 1868 1.984288 GCAGTAGGGGTGGTGGGATC 61.984 65.000 0.00 0.00 0.00 3.36
1553 1869 2.001269 GCAGTAGGGGTGGTGGGAT 61.001 63.158 0.00 0.00 0.00 3.85
1561 1877 2.285442 GGTGGGAGCAGTAGGGGT 60.285 66.667 0.00 0.00 0.00 4.95
1562 1878 2.285368 TGGTGGGAGCAGTAGGGG 60.285 66.667 0.00 0.00 0.00 4.79
1620 1936 2.746277 GTTGGGCTGGTAGGCACG 60.746 66.667 4.75 0.00 43.44 5.34
1661 1977 0.035056 GACCTGTGGGATGTTGGGAG 60.035 60.000 0.00 0.00 36.25 4.30
1679 1995 1.997311 CTGTCCTGCCATGAGGGGA 60.997 63.158 0.00 0.00 37.04 4.81
1717 2033 0.663153 GCGCCATTAGACAATCCACC 59.337 55.000 0.00 0.00 0.00 4.61
1722 2038 1.134946 GCCTTTGCGCCATTAGACAAT 59.865 47.619 4.18 0.00 0.00 2.71
1898 2214 1.226773 GCTCATTGCACGGGAATGC 60.227 57.895 11.45 1.60 46.32 3.56
1899 2215 0.379669 GAGCTCATTGCACGGGAATG 59.620 55.000 9.40 10.45 45.94 2.67
1900 2216 0.749454 GGAGCTCATTGCACGGGAAT 60.749 55.000 17.19 0.00 45.94 3.01
1902 2218 2.268920 GGAGCTCATTGCACGGGA 59.731 61.111 17.19 0.00 45.94 5.14
1903 2219 2.572095 TACGGAGCTCATTGCACGGG 62.572 60.000 17.19 0.00 44.53 5.28
1904 2220 0.739462 TTACGGAGCTCATTGCACGG 60.739 55.000 17.19 0.00 44.53 4.94
1919 2235 3.623060 AGCACAGGAATAATGCACTTACG 59.377 43.478 0.00 0.00 41.97 3.18
1946 2286 6.813152 ACAAAAATTGAGTTTCAGTTGTCAGG 59.187 34.615 0.00 0.00 0.00 3.86
1951 2291 7.201548 CCCTGAACAAAAATTGAGTTTCAGTTG 60.202 37.037 15.10 7.27 38.55 3.16
1977 2321 6.560253 TTGGTTTTAGTCTTCTCTGAATGC 57.440 37.500 0.00 0.00 0.00 3.56
2172 2516 5.123027 CAGTTTCTTAATGGCAACCTCTCTC 59.877 44.000 0.00 0.00 0.00 3.20
2340 2684 1.478105 AGATGATAGTGCAGCGTGTCA 59.522 47.619 0.00 0.00 0.00 3.58
2421 2773 0.611062 AGTCGGAACTCGGGACATCA 60.611 55.000 0.00 0.00 39.77 3.07
2422 2774 0.179134 CAGTCGGAACTCGGGACATC 60.179 60.000 0.00 0.00 39.77 3.06
2447 2799 3.749088 ACGGCAGAATCAAAATACAACGA 59.251 39.130 0.00 0.00 0.00 3.85
2448 2800 3.845775 CACGGCAGAATCAAAATACAACG 59.154 43.478 0.00 0.00 0.00 4.10
2524 2883 1.539929 CCTTTAGCCGATCCAGCAGAG 60.540 57.143 5.28 0.58 0.00 3.35
2597 2960 1.830279 TGAGAAGAAAGCAGGGCATG 58.170 50.000 0.00 0.00 0.00 4.06
2727 3094 4.377897 GGGTTTCCCGAGTTATGTAGATG 58.622 47.826 0.00 0.00 32.13 2.90
2741 3108 5.891551 ACAATCATATTACAGTGGGTTTCCC 59.108 40.000 0.00 0.00 45.71 3.97
2742 3109 7.122055 TCAACAATCATATTACAGTGGGTTTCC 59.878 37.037 0.00 0.00 0.00 3.13
2743 3110 8.050778 TCAACAATCATATTACAGTGGGTTTC 57.949 34.615 0.00 0.00 0.00 2.78
2744 3111 8.593945 ATCAACAATCATATTACAGTGGGTTT 57.406 30.769 0.00 0.00 0.00 3.27
2745 3112 9.120538 GTATCAACAATCATATTACAGTGGGTT 57.879 33.333 0.00 0.00 0.00 4.11
2746 3113 8.494433 AGTATCAACAATCATATTACAGTGGGT 58.506 33.333 0.00 0.00 0.00 4.51
2747 3114 8.777413 CAGTATCAACAATCATATTACAGTGGG 58.223 37.037 0.00 0.00 0.00 4.61
2764 3131 6.316140 TGCACAGTATCCAATTCAGTATCAAC 59.684 38.462 0.00 0.00 0.00 3.18
2768 3135 6.359804 ACATGCACAGTATCCAATTCAGTAT 58.640 36.000 0.00 0.00 0.00 2.12
2787 3154 1.755179 ATCAGCAACCTGGTACATGC 58.245 50.000 12.92 12.92 41.64 4.06
2792 3159 3.153919 GACCAAAATCAGCAACCTGGTA 58.846 45.455 0.00 0.00 37.30 3.25
2839 3206 1.818060 ACCCGTGTAGTTACATGCGTA 59.182 47.619 6.07 0.00 40.87 4.42
2909 3284 5.618056 TCAGAAGATGAGCAAATGTGAAC 57.382 39.130 0.00 0.00 32.77 3.18
3057 3442 0.930310 ATGGATTTGATGCGTCGACG 59.070 50.000 32.57 32.57 43.27 5.12
3063 3448 1.750206 TCACCCAATGGATTTGATGCG 59.250 47.619 0.00 0.00 37.53 4.73
3081 3466 1.203287 CACTCGACAAGGCTCTCATCA 59.797 52.381 0.00 0.00 0.00 3.07
3115 3500 6.059787 ACAGAGCTGAAATCCTCATTTAGT 57.940 37.500 4.21 0.00 31.94 2.24
3116 3501 6.596888 TCAACAGAGCTGAAATCCTCATTTAG 59.403 38.462 4.21 0.00 31.94 1.85
3132 3696 4.202151 ACTTTCCCATTGTTTCAACAGAGC 60.202 41.667 0.00 0.00 40.50 4.09
3229 3803 9.827411 GATTTGATCATCATCACATTGTCTATG 57.173 33.333 0.00 3.31 38.86 2.23
3252 3972 8.463930 TGACAAATAACTGGAACTGAAAGATT 57.536 30.769 0.00 0.00 37.43 2.40
3258 3978 9.685276 ATAATCATGACAAATAACTGGAACTGA 57.315 29.630 0.00 0.00 0.00 3.41
3261 3981 9.438291 CGAATAATCATGACAAATAACTGGAAC 57.562 33.333 0.00 0.00 0.00 3.62
3263 3983 8.731275 ACGAATAATCATGACAAATAACTGGA 57.269 30.769 0.00 0.00 0.00 3.86
3308 4051 1.800586 CTGGTTCACGACTTCACATGG 59.199 52.381 0.00 0.00 0.00 3.66
3367 4110 8.324191 ACAGAGGATCAATCTTATAAACCAGA 57.676 34.615 0.00 0.00 37.82 3.86
3413 4165 0.749454 GCCTGCAGATAACTGTGGGG 60.749 60.000 17.39 0.00 45.04 4.96
3414 4166 0.254178 AGCCTGCAGATAACTGTGGG 59.746 55.000 17.39 10.77 45.04 4.61
3445 4197 2.507324 GTCTCGAGCGCTTGGGTC 60.507 66.667 23.90 15.20 39.80 4.46
3448 4200 2.507992 CCAGTCTCGAGCGCTTGG 60.508 66.667 24.31 16.61 0.00 3.61
3622 4374 4.216902 TGCTGTTCTGAAAAGATGATGTGG 59.783 41.667 11.77 0.00 0.00 4.17
3672 4500 7.540745 CGGTGATAAAAATGTTTTAACCTCTGG 59.459 37.037 10.44 0.00 0.00 3.86
3686 4519 3.181487 GCAGATGTGCCGGTGATAAAAAT 60.181 43.478 2.79 0.00 44.72 1.82
3701 4534 1.549620 CACCTGAGACAGAGCAGATGT 59.450 52.381 0.00 0.00 34.06 3.06
3727 4560 0.110147 CGGTTAGGCTATCGAGAGCG 60.110 60.000 24.44 6.95 43.83 5.03
3799 4632 4.096003 ATCTCCGCGGTGTTGGGG 62.096 66.667 27.15 7.82 42.99 4.96
3943 4779 6.761714 GCTAGTTACACTACTATGGTTGCAAT 59.238 38.462 0.59 0.00 30.65 3.56
3945 4781 5.421056 AGCTAGTTACACTACTATGGTTGCA 59.579 40.000 0.00 0.00 30.65 4.08
3964 4800 4.283722 CAGTAATAACCCCACCCTAGCTAG 59.716 50.000 14.20 14.20 0.00 3.42
3974 4810 2.241176 CCAAGGAGCAGTAATAACCCCA 59.759 50.000 0.00 0.00 0.00 4.96
3979 4815 6.945435 TGAAATGAACCAAGGAGCAGTAATAA 59.055 34.615 0.00 0.00 0.00 1.40
4047 4885 2.178521 CGAGACGACGACCCCAAG 59.821 66.667 0.00 0.00 35.09 3.61
4078 4920 1.608801 CCAGCACGCTATATGCATCCA 60.609 52.381 0.19 0.00 45.92 3.41
4096 4954 2.158370 TCCTATTCATAGACGGCTCCCA 60.158 50.000 0.00 0.00 32.05 4.37
4100 4958 2.834549 CCCATCCTATTCATAGACGGCT 59.165 50.000 0.00 0.00 32.05 5.52
4101 4959 2.678190 GCCCATCCTATTCATAGACGGC 60.678 54.545 0.00 0.00 32.05 5.68
4108 4966 0.478072 TTGCGGCCCATCCTATTCAT 59.522 50.000 0.00 0.00 0.00 2.57
4111 4969 0.179018 GACTTGCGGCCCATCCTATT 60.179 55.000 0.00 0.00 0.00 1.73
4114 4972 3.329889 TGACTTGCGGCCCATCCT 61.330 61.111 0.00 0.00 0.00 3.24
4115 4973 3.134127 GTGACTTGCGGCCCATCC 61.134 66.667 0.00 0.00 0.00 3.51
4118 4976 3.555324 TCAGTGACTTGCGGCCCA 61.555 61.111 0.00 0.00 0.00 5.36
4119 4977 3.050275 GTCAGTGACTTGCGGCCC 61.050 66.667 16.26 0.00 0.00 5.80
4121 4979 0.601311 AAGAGTCAGTGACTTGCGGC 60.601 55.000 26.14 13.32 43.53 6.53
4123 4981 1.143305 CCAAGAGTCAGTGACTTGCG 58.857 55.000 26.14 16.32 43.53 4.85
4125 4983 2.289320 CCCTCCAAGAGTCAGTGACTTG 60.289 54.545 26.14 20.17 43.53 3.16
4128 4986 0.610687 CCCCTCCAAGAGTCAGTGAC 59.389 60.000 15.78 15.78 0.00 3.67
4130 4988 1.352083 TTCCCCTCCAAGAGTCAGTG 58.648 55.000 0.00 0.00 0.00 3.66
4138 4997 1.075374 TCCACACAATTCCCCTCCAAG 59.925 52.381 0.00 0.00 0.00 3.61
4158 5063 0.107017 CGCCCATGATTCCCAAGAGT 60.107 55.000 0.00 0.00 0.00 3.24
4171 5076 2.871096 TCTTTTCTTACCACGCCCAT 57.129 45.000 0.00 0.00 0.00 4.00
4181 5086 9.474920 CATAACAACCAAGCATTTCTTTTCTTA 57.525 29.630 0.00 0.00 31.27 2.10
4185 5090 6.482973 CCACATAACAACCAAGCATTTCTTTT 59.517 34.615 0.00 0.00 31.27 2.27
4187 5092 5.511202 CCCACATAACAACCAAGCATTTCTT 60.511 40.000 0.00 0.00 34.78 2.52
4189 5094 4.244862 CCCACATAACAACCAAGCATTTC 58.755 43.478 0.00 0.00 0.00 2.17
4192 5097 1.550072 GCCCACATAACAACCAAGCAT 59.450 47.619 0.00 0.00 0.00 3.79
4193 5098 0.965439 GCCCACATAACAACCAAGCA 59.035 50.000 0.00 0.00 0.00 3.91
4194 5099 1.256812 AGCCCACATAACAACCAAGC 58.743 50.000 0.00 0.00 0.00 4.01
4195 5100 3.950397 TCTAGCCCACATAACAACCAAG 58.050 45.455 0.00 0.00 0.00 3.61
4197 5102 4.227300 AGAATCTAGCCCACATAACAACCA 59.773 41.667 0.00 0.00 0.00 3.67
4198 5103 4.781934 AGAATCTAGCCCACATAACAACC 58.218 43.478 0.00 0.00 0.00 3.77
4199 5104 5.066505 CCAAGAATCTAGCCCACATAACAAC 59.933 44.000 0.00 0.00 0.00 3.32
4200 5105 5.192927 CCAAGAATCTAGCCCACATAACAA 58.807 41.667 0.00 0.00 0.00 2.83
4261 5170 3.678717 CTGCTCATGCGCACAAGCC 62.679 63.158 31.51 19.44 43.34 4.35
4279 5201 1.997874 AGCCTCCATCCCACCTCAC 60.998 63.158 0.00 0.00 0.00 3.51
4286 5208 3.628646 AACGCACAGCCTCCATCCC 62.629 63.158 0.00 0.00 0.00 3.85
4324 5251 1.228459 GTTCCCTTCACCCACCCAC 60.228 63.158 0.00 0.00 0.00 4.61
4329 5256 1.659022 TATTCCGTTCCCTTCACCCA 58.341 50.000 0.00 0.00 0.00 4.51
4330 5257 2.793288 TTATTCCGTTCCCTTCACCC 57.207 50.000 0.00 0.00 0.00 4.61
4342 5269 8.253810 AGTGGACATGACAGATATATTATTCCG 58.746 37.037 0.00 0.00 0.00 4.30
4381 5308 5.247564 TCACGAGGATTAGAGAAAAGGGAAA 59.752 40.000 0.00 0.00 0.00 3.13
4384 5311 4.402793 TCTCACGAGGATTAGAGAAAAGGG 59.597 45.833 0.00 0.00 34.45 3.95
4385 5312 5.584253 TCTCACGAGGATTAGAGAAAAGG 57.416 43.478 0.00 0.00 34.45 3.11
4386 5313 6.857956 TCTTCTCACGAGGATTAGAGAAAAG 58.142 40.000 0.00 0.00 43.97 2.27
4387 5314 6.835819 TCTTCTCACGAGGATTAGAGAAAA 57.164 37.500 0.00 0.00 43.97 2.29
4388 5315 6.681616 GCATCTTCTCACGAGGATTAGAGAAA 60.682 42.308 0.00 0.00 43.97 2.52
4389 5316 5.221145 GCATCTTCTCACGAGGATTAGAGAA 60.221 44.000 0.00 0.00 42.85 2.87
4392 5319 3.954258 TGCATCTTCTCACGAGGATTAGA 59.046 43.478 0.00 0.00 34.12 2.10
4393 5320 4.313277 TGCATCTTCTCACGAGGATTAG 57.687 45.455 0.00 0.00 34.12 1.73
4394 5321 4.736126 TTGCATCTTCTCACGAGGATTA 57.264 40.909 0.00 0.00 34.12 1.75
4396 5323 3.616956 TTTGCATCTTCTCACGAGGAT 57.383 42.857 0.00 0.00 36.51 3.24
4397 5324 3.401033 TTTTGCATCTTCTCACGAGGA 57.599 42.857 0.00 0.00 0.00 3.71
4398 5325 3.669023 GCTTTTTGCATCTTCTCACGAGG 60.669 47.826 0.00 0.00 42.31 4.63
4400 5327 3.141398 AGCTTTTTGCATCTTCTCACGA 58.859 40.909 0.00 0.00 45.94 4.35
4401 5328 3.549299 AGCTTTTTGCATCTTCTCACG 57.451 42.857 0.00 0.00 45.94 4.35
4402 5329 5.571778 CAAAGCTTTTTGCATCTTCTCAC 57.428 39.130 9.53 0.00 45.94 3.51
4413 5340 5.488645 AAAAGGATGTGCAAAGCTTTTTG 57.511 34.783 13.51 0.63 35.15 2.44
4414 5341 5.415389 ACAAAAAGGATGTGCAAAGCTTTTT 59.585 32.000 9.53 8.99 0.00 1.94
4415 5342 4.943093 ACAAAAAGGATGTGCAAAGCTTTT 59.057 33.333 9.53 0.00 0.00 2.27
4416 5343 4.516323 ACAAAAAGGATGTGCAAAGCTTT 58.484 34.783 5.69 5.69 0.00 3.51
4417 5344 4.141233 ACAAAAAGGATGTGCAAAGCTT 57.859 36.364 0.00 0.00 0.00 3.74
4459 5404 4.284746 ACTGAAAAACACCTCACCCAAAAA 59.715 37.500 0.00 0.00 0.00 1.94
4471 5416 3.131240 ACACGAGCAACTGAAAAACAC 57.869 42.857 0.00 0.00 0.00 3.32
4473 5418 6.453265 GGTTAAAACACGAGCAACTGAAAAAC 60.453 38.462 0.00 0.00 0.00 2.43
4478 5423 2.614983 GGGTTAAAACACGAGCAACTGA 59.385 45.455 0.00 0.00 0.00 3.41
4479 5424 2.356382 TGGGTTAAAACACGAGCAACTG 59.644 45.455 0.00 0.00 34.21 3.16
4480 5425 2.356695 GTGGGTTAAAACACGAGCAACT 59.643 45.455 0.00 0.00 34.21 3.16
4481 5426 2.097791 TGTGGGTTAAAACACGAGCAAC 59.902 45.455 0.00 0.00 40.39 4.17
4482 5427 2.366533 TGTGGGTTAAAACACGAGCAA 58.633 42.857 0.00 0.00 40.39 3.91
4483 5428 2.039818 TGTGGGTTAAAACACGAGCA 57.960 45.000 0.00 0.00 40.39 4.26
4484 5429 2.351350 CCATGTGGGTTAAAACACGAGC 60.351 50.000 0.00 0.00 40.39 5.03
4485 5430 3.058501 GTCCATGTGGGTTAAAACACGAG 60.059 47.826 0.00 0.00 40.39 4.18
4486 5431 2.879646 GTCCATGTGGGTTAAAACACGA 59.120 45.455 0.00 0.00 40.39 4.35
4487 5432 2.030628 GGTCCATGTGGGTTAAAACACG 60.031 50.000 0.00 0.00 40.39 4.49
4488 5433 2.959707 TGGTCCATGTGGGTTAAAACAC 59.040 45.455 0.00 4.32 38.11 3.32
4490 5435 3.829601 TCATGGTCCATGTGGGTTAAAAC 59.170 43.478 27.50 0.00 41.98 2.43
4492 5437 3.816398 TCATGGTCCATGTGGGTTAAA 57.184 42.857 27.50 6.63 41.98 1.52
4493 5438 3.527253 AGATCATGGTCCATGTGGGTTAA 59.473 43.478 27.50 10.22 41.98 2.01
4495 5440 1.925255 AGATCATGGTCCATGTGGGTT 59.075 47.619 27.50 11.41 41.98 4.11
4496 5441 1.213678 CAGATCATGGTCCATGTGGGT 59.786 52.381 27.50 14.45 41.98 4.51
4498 5443 3.286329 TTCAGATCATGGTCCATGTGG 57.714 47.619 27.50 16.62 41.98 4.17
4500 5445 4.581309 AGTTTCAGATCATGGTCCATGT 57.419 40.909 27.50 16.83 41.98 3.21
4507 5480 7.961351 AGGATCTTACTAGTTTCAGATCATGG 58.039 38.462 25.73 0.00 42.38 3.66
4528 5501 2.364842 ACTCCGCAGCCAGAGGAT 60.365 61.111 11.00 0.00 45.69 3.24
4540 5513 1.134075 CTACCGTGTCGTGACTCCG 59.866 63.158 1.23 3.99 0.00 4.63
4584 5557 2.481952 ACACTAGTCGTCTACGTCCAAC 59.518 50.000 0.00 0.00 40.80 3.77
4626 5602 2.116827 TTACCGGTAACCTGGCAATG 57.883 50.000 23.17 0.00 0.00 2.82
4634 5622 4.682401 CAGTTTTGCATTTTACCGGTAACC 59.318 41.667 26.53 14.87 0.00 2.85
4650 5638 7.307989 CCACCACTATCTTCAGTAACAGTTTTG 60.308 40.741 0.00 0.00 0.00 2.44
4661 5730 0.179073 CGCCCCACCACTATCTTCAG 60.179 60.000 0.00 0.00 0.00 3.02
4714 6842 0.668535 CGGCTATCATCACTCGGTCA 59.331 55.000 0.00 0.00 0.00 4.02
4798 7267 4.313020 AGGCACTTCATCCTTGATTCTT 57.687 40.909 0.00 0.00 27.25 2.52
4894 7369 5.145564 CCCATTCCATCCTTGATTCTTCAT 58.854 41.667 0.00 0.00 0.00 2.57
4897 7372 4.614967 ACCCATTCCATCCTTGATTCTT 57.385 40.909 0.00 0.00 0.00 2.52
4898 7373 4.017222 TCAACCCATTCCATCCTTGATTCT 60.017 41.667 0.00 0.00 0.00 2.40
4899 7374 4.280819 TCAACCCATTCCATCCTTGATTC 58.719 43.478 0.00 0.00 0.00 2.52
4902 7377 2.621407 GCTCAACCCATTCCATCCTTGA 60.621 50.000 0.00 0.00 0.00 3.02
4903 7378 1.753073 GCTCAACCCATTCCATCCTTG 59.247 52.381 0.00 0.00 0.00 3.61
4905 7380 1.002069 TGCTCAACCCATTCCATCCT 58.998 50.000 0.00 0.00 0.00 3.24
4906 7381 1.396653 CTGCTCAACCCATTCCATCC 58.603 55.000 0.00 0.00 0.00 3.51
4907 7382 0.743097 GCTGCTCAACCCATTCCATC 59.257 55.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.