Multiple sequence alignment - TraesCS3A01G002600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G002600 chr3A 100.000 2987 0 0 1 2987 1573563 1576549 0.000000e+00 5517.0
1 TraesCS3A01G002600 chr3A 89.406 1095 63 20 1584 2643 401018316 401019392 0.000000e+00 1330.0
2 TraesCS3A01G002600 chr3A 86.160 513 32 12 1105 1591 1593317 1593816 4.410000e-143 518.0
3 TraesCS3A01G002600 chr3A 85.230 501 43 16 467 937 1592551 1593050 1.240000e-133 486.0
4 TraesCS3A01G002600 chr3A 91.336 277 18 2 2644 2914 620206565 620206289 1.010000e-99 374.0
5 TraesCS3A01G002600 chr3A 80.175 343 45 13 1167 1495 1514388 1514721 4.980000e-58 235.0
6 TraesCS3A01G002600 chr3A 98.058 103 2 0 1066 1168 1574534 1574636 2.370000e-41 180.0
7 TraesCS3A01G002600 chr3A 98.058 103 2 0 972 1074 1574628 1574730 2.370000e-41 180.0
8 TraesCS3A01G002600 chr3A 98.361 61 1 0 1011 1071 1593317 1593377 1.130000e-19 108.0
9 TraesCS3A01G002600 chr3A 85.437 103 9 3 862 964 1513993 1514089 5.270000e-18 102.0
10 TraesCS3A01G002600 chrUn 94.592 1054 57 0 1590 2643 234093383 234094436 0.000000e+00 1631.0
11 TraesCS3A01G002600 chrUn 96.417 949 33 1 1578 2526 150908544 150907597 0.000000e+00 1563.0
12 TraesCS3A01G002600 chrUn 96.692 937 31 0 1590 2526 150937505 150936569 0.000000e+00 1559.0
13 TraesCS3A01G002600 chrUn 96.207 949 35 1 1578 2526 150898518 150897571 0.000000e+00 1552.0
14 TraesCS3A01G002600 chrUn 94.987 399 19 1 1105 1502 34183928 34184326 2.530000e-175 625.0
15 TraesCS3A01G002600 chrUn 92.548 416 28 2 1072 1484 307093533 307093948 7.130000e-166 593.0
16 TraesCS3A01G002600 chrUn 87.118 458 36 8 489 941 307092876 307093315 5.750000e-137 497.0
17 TraesCS3A01G002600 chrUn 91.057 369 13 4 1105 1456 32262262 32262627 5.790000e-132 481.0
18 TraesCS3A01G002600 chrUn 84.189 487 40 12 467 937 32261530 32261995 3.530000e-119 438.0
19 TraesCS3A01G002600 chrUn 85.755 351 40 5 1 343 307092192 307092540 2.190000e-96 363.0
20 TraesCS3A01G002600 chrUn 82.746 284 40 5 1150 1427 34497725 34497445 8.270000e-61 244.0
21 TraesCS3A01G002600 chrUn 77.644 331 53 11 1 328 32261044 32261356 6.580000e-42 182.0
22 TraesCS3A01G002600 chrUn 80.193 207 20 5 753 938 32250482 32250688 5.190000e-28 135.0
23 TraesCS3A01G002600 chrUn 79.904 209 22 4 753 941 34500020 34499812 5.190000e-28 135.0
24 TraesCS3A01G002600 chrUn 83.226 155 9 4 1440 1591 32262643 32262783 3.130000e-25 126.0
25 TraesCS3A01G002600 chrUn 98.361 61 1 0 1011 1071 32262262 32262322 1.130000e-19 108.0
26 TraesCS3A01G002600 chrUn 93.750 64 4 0 1011 1074 34183928 34183991 2.450000e-16 97.1
27 TraesCS3A01G002600 chr6B 94.592 1054 57 0 1590 2643 154173192 154174245 0.000000e+00 1631.0
28 TraesCS3A01G002600 chr6A 92.686 752 53 2 1669 2419 32888486 32889236 0.000000e+00 1083.0
29 TraesCS3A01G002600 chr6A 94.203 552 31 1 1590 2140 70970669 70970118 0.000000e+00 841.0
30 TraesCS3A01G002600 chr6A 89.037 301 23 3 2642 2932 272976793 272976493 6.080000e-97 364.0
31 TraesCS3A01G002600 chr6A 95.161 124 6 0 1592 1715 32888364 32888487 2.350000e-46 196.0
32 TraesCS3A01G002600 chr2D 93.586 608 36 3 1820 2426 220660235 220660840 0.000000e+00 904.0
33 TraesCS3A01G002600 chr2D 95.964 223 9 0 2421 2643 220665819 220666041 2.190000e-96 363.0
34 TraesCS3A01G002600 chr2D 98.039 51 1 0 2892 2942 633842285 633842235 4.100000e-14 89.8
35 TraesCS3A01G002600 chr5B 90.162 681 51 10 1590 2270 546505353 546504689 0.000000e+00 872.0
36 TraesCS3A01G002600 chr3D 91.603 524 35 6 1072 1591 2526179 2525661 0.000000e+00 715.0
37 TraesCS3A01G002600 chr3D 86.708 489 56 7 467 950 2526887 2526403 4.380000e-148 534.0
38 TraesCS3A01G002600 chr3D 84.771 545 46 14 1073 1591 2462209 2461676 2.050000e-141 512.0
39 TraesCS3A01G002600 chr3D 81.602 337 50 4 1169 1493 2465461 2465125 4.910000e-68 268.0
40 TraesCS3A01G002600 chr3D 79.093 397 54 14 1070 1438 2533295 2532900 2.300000e-61 246.0
41 TraesCS3A01G002600 chr3D 80.816 245 35 6 4 247 2529217 2528984 6.580000e-42 182.0
42 TraesCS3A01G002600 chr3D 80.085 236 26 7 753 968 2533719 2533485 3.990000e-34 156.0
43 TraesCS3A01G002600 chr3D 90.000 100 7 3 978 1074 2526179 2526080 3.130000e-25 126.0
44 TraesCS3A01G002600 chr3D 77.869 244 25 11 753 970 2469977 2469737 1.120000e-24 124.0
45 TraesCS3A01G002600 chr3D 86.667 105 5 2 979 1074 2462209 2462105 1.130000e-19 108.0
46 TraesCS3A01G002600 chr7D 93.237 414 27 1 1589 2002 20612528 20612940 2.550000e-170 608.0
47 TraesCS3A01G002600 chr7D 84.746 59 7 2 261 317 135972600 135972542 1.160000e-04 58.4
48 TraesCS3A01G002600 chr4A 90.681 279 20 2 2641 2913 85249739 85250017 1.690000e-97 366.0
49 TraesCS3A01G002600 chr2A 90.545 275 20 2 2644 2912 528130444 528130170 2.830000e-95 359.0
50 TraesCS3A01G002600 chr2A 90.494 263 23 2 2644 2904 533515906 533516168 2.200000e-91 346.0
51 TraesCS3A01G002600 chr2A 86.834 319 22 8 2644 2944 105626646 105626962 3.690000e-89 339.0
52 TraesCS3A01G002600 chr5A 90.406 271 25 1 2662 2932 410870988 410871257 3.660000e-94 355.0
53 TraesCS3A01G002600 chr5A 89.123 285 18 5 2642 2913 136981071 136980787 2.850000e-90 342.0
54 TraesCS3A01G002600 chr1A 89.130 276 24 2 2642 2911 465212452 465212727 3.690000e-89 339.0
55 TraesCS3A01G002600 chr4D 91.189 227 18 2 1590 1814 373662509 373662735 1.040000e-79 307.0
56 TraesCS3A01G002600 chr4D 93.855 179 10 1 1592 1769 373661986 373662164 4.910000e-68 268.0
57 TraesCS3A01G002600 chr7A 82.807 285 29 5 2660 2934 102369281 102369555 1.380000e-58 237.0
58 TraesCS3A01G002600 chr2B 100.000 29 0 0 2901 2929 117900372 117900400 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G002600 chr3A 1573563 1576549 2986 False 1959.000000 5517 98.705333 1 2987 3 chr3A.!!$F3 2986
1 TraesCS3A01G002600 chr3A 401018316 401019392 1076 False 1330.000000 1330 89.406000 1584 2643 1 chr3A.!!$F1 1059
2 TraesCS3A01G002600 chr3A 1592551 1593816 1265 False 370.666667 518 89.917000 467 1591 3 chr3A.!!$F4 1124
3 TraesCS3A01G002600 chrUn 234093383 234094436 1053 False 1631.000000 1631 94.592000 1590 2643 1 chrUn.!!$F2 1053
4 TraesCS3A01G002600 chrUn 150907597 150908544 947 True 1563.000000 1563 96.417000 1578 2526 1 chrUn.!!$R2 948
5 TraesCS3A01G002600 chrUn 150936569 150937505 936 True 1559.000000 1559 96.692000 1590 2526 1 chrUn.!!$R3 936
6 TraesCS3A01G002600 chrUn 150897571 150898518 947 True 1552.000000 1552 96.207000 1578 2526 1 chrUn.!!$R1 948
7 TraesCS3A01G002600 chrUn 307092192 307093948 1756 False 484.333333 593 88.473667 1 1484 3 chrUn.!!$F5 1483
8 TraesCS3A01G002600 chrUn 32261044 32262783 1739 False 267.000000 481 86.895400 1 1591 5 chrUn.!!$F3 1590
9 TraesCS3A01G002600 chr6B 154173192 154174245 1053 False 1631.000000 1631 94.592000 1590 2643 1 chr6B.!!$F1 1053
10 TraesCS3A01G002600 chr6A 70970118 70970669 551 True 841.000000 841 94.203000 1590 2140 1 chr6A.!!$R1 550
11 TraesCS3A01G002600 chr6A 32888364 32889236 872 False 639.500000 1083 93.923500 1592 2419 2 chr6A.!!$F1 827
12 TraesCS3A01G002600 chr2D 220660235 220660840 605 False 904.000000 904 93.586000 1820 2426 1 chr2D.!!$F1 606
13 TraesCS3A01G002600 chr5B 546504689 546505353 664 True 872.000000 872 90.162000 1590 2270 1 chr5B.!!$R1 680
14 TraesCS3A01G002600 chr3D 2525661 2533719 8058 True 326.500000 715 84.717500 4 1591 6 chr3D.!!$R3 1587
15 TraesCS3A01G002600 chr3D 2461676 2465461 3785 True 296.000000 512 84.346667 979 1591 3 chr3D.!!$R2 612
16 TraesCS3A01G002600 chr4D 373661986 373662735 749 False 287.500000 307 92.522000 1590 1814 2 chr4D.!!$F1 224

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 7338 0.179127 CACATCGCCATGACTCGACT 60.179 55.0 0.0 0.0 37.55 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2676 13019 0.331616 AGGTTTTATGGCTCGGGCTT 59.668 50.0 7.48 0.0 38.73 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 4580 4.811024 TCAATGCTCCTTGAATCGTGTATC 59.189 41.667 0.00 0.00 32.35 2.24
105 4617 5.692115 TGAAACTAGAGAATACCCATGCA 57.308 39.130 0.00 0.00 0.00 3.96
112 4624 3.461085 AGAGAATACCCATGCATTCCTGT 59.539 43.478 0.00 0.00 32.61 4.00
125 4637 3.349927 CATTCCTGTGAGAATTGGCTGA 58.650 45.455 0.00 0.00 34.19 4.26
152 4664 5.705609 TCTTTTACTGAGATTTGGTTGCC 57.294 39.130 0.00 0.00 0.00 4.52
250 4762 5.010708 TGGGAATAAAGAGCCTTTTTCCT 57.989 39.130 22.35 6.21 0.00 3.36
251 4763 4.772100 TGGGAATAAAGAGCCTTTTTCCTG 59.228 41.667 22.35 0.00 0.00 3.86
252 4764 4.382040 GGGAATAAAGAGCCTTTTTCCTGC 60.382 45.833 22.35 13.69 0.00 4.85
258 4770 1.067250 GCCTTTTTCCTGCGCACAA 59.933 52.632 5.66 0.00 0.00 3.33
259 4771 1.215014 GCCTTTTTCCTGCGCACAAC 61.215 55.000 5.66 0.00 0.00 3.32
261 4773 1.480205 CTTTTTCCTGCGCACAACTG 58.520 50.000 5.66 0.00 0.00 3.16
262 4774 0.527385 TTTTTCCTGCGCACAACTGC 60.527 50.000 5.66 0.00 40.38 4.40
263 4775 1.383456 TTTTCCTGCGCACAACTGCT 61.383 50.000 5.66 0.00 41.77 4.24
265 4777 2.050714 CCTGCGCACAACTGCTTG 60.051 61.111 5.66 0.00 41.77 4.01
266 4778 2.717485 CTGCGCACAACTGCTTGT 59.283 55.556 5.66 0.00 41.77 3.16
267 4779 1.369689 CTGCGCACAACTGCTTGTC 60.370 57.895 5.66 0.00 41.77 3.18
270 4785 1.202568 CGCACAACTGCTTGTCGAG 59.797 57.895 0.00 0.00 41.77 4.04
347 6735 8.995220 TGTTATTCTGACAACCTATTTACACAC 58.005 33.333 0.38 0.00 0.00 3.82
349 6737 6.854496 TTCTGACAACCTATTTACACACAC 57.146 37.500 0.00 0.00 0.00 3.82
351 6739 5.756347 TCTGACAACCTATTTACACACACAC 59.244 40.000 0.00 0.00 0.00 3.82
353 6741 5.294799 TGACAACCTATTTACACACACACAC 59.705 40.000 0.00 0.00 0.00 3.82
355 6743 5.065474 ACAACCTATTTACACACACACACAC 59.935 40.000 0.00 0.00 0.00 3.82
356 6744 4.771903 ACCTATTTACACACACACACACA 58.228 39.130 0.00 0.00 0.00 3.72
357 6745 4.573201 ACCTATTTACACACACACACACAC 59.427 41.667 0.00 0.00 0.00 3.82
359 6747 3.815337 TTTACACACACACACACACAC 57.185 42.857 0.00 0.00 0.00 3.82
361 6749 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
364 6752 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
366 6754 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
368 6756 2.095314 CACACACACACACACACACAAT 60.095 45.455 0.00 0.00 0.00 2.71
369 6757 3.126000 CACACACACACACACACACAATA 59.874 43.478 0.00 0.00 0.00 1.90
371 6759 4.035091 ACACACACACACACACACAATATC 59.965 41.667 0.00 0.00 0.00 1.63
372 6760 4.034975 CACACACACACACACACAATATCA 59.965 41.667 0.00 0.00 0.00 2.15
373 6761 4.637977 ACACACACACACACACAATATCAA 59.362 37.500 0.00 0.00 0.00 2.57
374 6762 5.124617 ACACACACACACACACAATATCAAA 59.875 36.000 0.00 0.00 0.00 2.69
375 6763 6.183360 ACACACACACACACACAATATCAAAT 60.183 34.615 0.00 0.00 0.00 2.32
376 6764 6.360414 CACACACACACACACAATATCAAATC 59.640 38.462 0.00 0.00 0.00 2.17
377 6765 5.564882 CACACACACACACAATATCAAATCG 59.435 40.000 0.00 0.00 0.00 3.34
378 6766 5.468409 ACACACACACACAATATCAAATCGA 59.532 36.000 0.00 0.00 0.00 3.59
379 6767 6.149308 ACACACACACACAATATCAAATCGAT 59.851 34.615 0.00 0.00 38.21 3.59
396 6811 9.887406 TCAAATCGATAGTTCCAAAAACTAAAC 57.113 29.630 0.00 0.45 36.45 2.01
441 6859 1.078214 CGAGCTCCCAGGCAATTGA 60.078 57.895 10.34 0.00 34.17 2.57
452 6870 2.229784 CAGGCAATTGAAGTTCTGGTCC 59.770 50.000 10.34 0.00 0.00 4.46
463 6888 1.021202 TTCTGGTCCGCACAAAGTTG 58.979 50.000 0.00 0.00 0.00 3.16
500 7113 3.155167 CCTCCTGCCGTACCCCTC 61.155 72.222 0.00 0.00 0.00 4.30
546 7159 1.130054 GGCATCCTCCAGGGCATCTA 61.130 60.000 0.00 0.00 35.41 1.98
575 7188 4.020928 TCCGTCACAGCAAGGTTAATTCTA 60.021 41.667 0.00 0.00 0.00 2.10
602 7223 3.770040 CACCACCCTCGCCATCGA 61.770 66.667 0.00 0.00 43.28 3.59
626 7248 1.134694 GGAAACATCGAGCCAACGC 59.865 57.895 0.00 0.00 0.00 4.84
647 7269 4.455606 GCTATGATTTGTTGCTACTCCCT 58.544 43.478 0.00 0.00 0.00 4.20
648 7270 4.513318 GCTATGATTTGTTGCTACTCCCTC 59.487 45.833 0.00 0.00 0.00 4.30
658 7280 4.317530 TGCTACTCCCTCTCTCTTTGTA 57.682 45.455 0.00 0.00 0.00 2.41
667 7289 7.841729 ACTCCCTCTCTCTTTGTAAATCTATCA 59.158 37.037 0.00 0.00 0.00 2.15
674 7296 9.958234 CTCTCTTTGTAAATCTATCATCGAGAA 57.042 33.333 0.00 0.00 0.00 2.87
696 7322 2.302260 TGGATTTGAAGTTTCGGCACA 58.698 42.857 0.00 0.00 0.00 4.57
712 7338 0.179127 CACATCGCCATGACTCGACT 60.179 55.000 0.00 0.00 37.55 4.18
723 7349 3.637998 TGACTCGACTAACCTCACAAC 57.362 47.619 0.00 0.00 0.00 3.32
752 7382 6.406961 CCTTTTTAGGTAAATCAGCAATCCCC 60.407 42.308 0.00 0.00 0.00 4.81
754 7384 5.466127 TTAGGTAAATCAGCAATCCCCTT 57.534 39.130 0.00 0.00 0.00 3.95
755 7385 3.635591 AGGTAAATCAGCAATCCCCTTG 58.364 45.455 0.00 0.00 37.94 3.61
756 7386 3.269381 AGGTAAATCAGCAATCCCCTTGA 59.731 43.478 0.00 0.00 36.97 3.02
757 7387 4.078980 AGGTAAATCAGCAATCCCCTTGAT 60.079 41.667 0.00 0.00 36.97 2.57
758 7388 4.279420 GGTAAATCAGCAATCCCCTTGATC 59.721 45.833 0.00 0.00 36.97 2.92
761 7391 0.820891 CAGCAATCCCCTTGATCGGG 60.821 60.000 0.00 0.00 44.27 5.14
812 7458 0.744281 AGGTGCGGTTTTGACCTTTG 59.256 50.000 0.00 0.00 36.68 2.77
820 7466 4.331443 GCGGTTTTGACCTTTGAACAATTT 59.669 37.500 0.00 0.00 0.00 1.82
890 7555 1.274728 GTAGCCATGATCTGCCTCGAT 59.725 52.381 0.00 0.00 0.00 3.59
964 7633 4.953868 CGCGGTGGACGTTGGTGA 62.954 66.667 0.00 0.00 46.52 4.02
970 7639 1.458777 TGGACGTTGGTGACCCTCT 60.459 57.895 0.00 0.00 0.00 3.69
971 7640 1.004918 GGACGTTGGTGACCCTCTG 60.005 63.158 0.00 0.00 0.00 3.35
972 7641 1.668151 GACGTTGGTGACCCTCTGC 60.668 63.158 0.00 0.00 0.00 4.26
973 7642 2.358737 CGTTGGTGACCCTCTGCC 60.359 66.667 0.00 0.00 0.00 4.85
974 7643 2.358737 GTTGGTGACCCTCTGCCG 60.359 66.667 0.00 0.00 0.00 5.69
975 7644 2.847234 TTGGTGACCCTCTGCCGT 60.847 61.111 0.00 0.00 0.00 5.68
976 7645 1.534476 TTGGTGACCCTCTGCCGTA 60.534 57.895 0.00 0.00 0.00 4.02
977 7646 1.122632 TTGGTGACCCTCTGCCGTAA 61.123 55.000 0.00 0.00 0.00 3.18
978 7647 1.079336 GGTGACCCTCTGCCGTAAC 60.079 63.158 0.00 0.00 0.00 2.50
979 7648 1.445582 GTGACCCTCTGCCGTAACG 60.446 63.158 0.00 0.00 0.00 3.18
980 7649 2.508663 GACCCTCTGCCGTAACGC 60.509 66.667 0.00 0.00 0.00 4.84
981 7650 2.995574 ACCCTCTGCCGTAACGCT 60.996 61.111 0.00 0.00 0.00 5.07
982 7651 2.509336 CCCTCTGCCGTAACGCTG 60.509 66.667 0.00 0.00 0.00 5.18
996 7665 2.114838 GCTGGCCCCCATGAGATC 59.885 66.667 0.00 0.00 30.82 2.75
997 7666 2.760378 GCTGGCCCCCATGAGATCA 61.760 63.158 0.00 0.00 30.82 2.92
1001 7670 1.152881 GCCCCCATGAGATCACCAC 60.153 63.158 0.00 0.00 0.00 4.16
1002 7671 1.533711 CCCCCATGAGATCACCACC 59.466 63.158 0.00 0.00 0.00 4.61
1003 7672 1.281199 CCCCCATGAGATCACCACCA 61.281 60.000 0.00 0.00 0.00 4.17
1004 7673 0.107017 CCCCATGAGATCACCACCAC 60.107 60.000 0.00 0.00 0.00 4.16
1006 7675 0.620030 CCATGAGATCACCACCACCA 59.380 55.000 0.00 0.00 0.00 4.17
1007 7676 1.213678 CCATGAGATCACCACCACCAT 59.786 52.381 0.00 0.00 0.00 3.55
1008 7677 2.569059 CATGAGATCACCACCACCATC 58.431 52.381 0.00 0.00 0.00 3.51
1012 7793 0.181350 GATCACCACCACCATCCTCC 59.819 60.000 0.00 0.00 0.00 4.30
1021 7802 1.589414 CACCATCCTCCTCCTCCTTT 58.411 55.000 0.00 0.00 0.00 3.11
1022 7803 1.918957 CACCATCCTCCTCCTCCTTTT 59.081 52.381 0.00 0.00 0.00 2.27
1023 7804 1.918957 ACCATCCTCCTCCTCCTTTTG 59.081 52.381 0.00 0.00 0.00 2.44
1024 7805 1.213926 CCATCCTCCTCCTCCTTTTGG 59.786 57.143 0.00 0.00 42.21 3.28
1025 7806 1.213926 CATCCTCCTCCTCCTTTTGGG 59.786 57.143 0.00 0.00 40.87 4.12
1026 7807 1.208165 TCCTCCTCCTCCTTTTGGGC 61.208 60.000 0.00 0.00 40.87 5.36
1027 7808 1.210885 CCTCCTCCTCCTTTTGGGCT 61.211 60.000 0.00 0.00 40.87 5.19
1028 7809 0.034670 CTCCTCCTCCTTTTGGGCTG 60.035 60.000 0.00 0.00 40.87 4.85
1031 7812 1.615384 CCTCCTCCTTTTGGGCTGAAG 60.615 57.143 0.00 0.00 40.87 3.02
1032 7813 0.405585 TCCTCCTTTTGGGCTGAAGG 59.594 55.000 7.47 7.47 43.04 3.46
1035 7816 1.444933 TCCTTTTGGGCTGAAGGAGA 58.555 50.000 11.06 0.00 44.83 3.71
1036 7817 1.073923 TCCTTTTGGGCTGAAGGAGAC 59.926 52.381 11.06 0.00 44.83 3.36
1037 7818 1.160137 CTTTTGGGCTGAAGGAGACG 58.840 55.000 0.00 0.00 0.00 4.18
1038 7819 0.889186 TTTTGGGCTGAAGGAGACGC 60.889 55.000 0.00 0.00 0.00 5.19
1040 7821 4.821589 GGGCTGAAGGAGACGCCG 62.822 72.222 0.00 0.00 43.38 6.46
1089 10772 3.882326 CGCTGGCCCCCATGAGAT 61.882 66.667 0.00 0.00 30.82 2.75
1098 10787 0.107017 CCCCATGAGATCACCACCAC 60.107 60.000 0.00 0.00 0.00 4.16
1101 10790 1.213678 CCATGAGATCACCACCACCAT 59.786 52.381 0.00 0.00 0.00 3.55
1301 10993 0.106318 GGAACCCTCGCCTCTACCTA 60.106 60.000 0.00 0.00 0.00 3.08
1375 11067 4.418401 GCCAAATGCGCGCCTTGA 62.418 61.111 32.51 16.74 0.00 3.02
1416 11137 0.096628 GCAGCAGCTTGATCTCAACG 59.903 55.000 0.00 0.00 37.91 4.10
1528 11297 0.799534 GCGCACTACACGTATTCGGT 60.800 55.000 0.30 0.00 41.85 4.69
1550 11319 2.325082 AAGCACGCATGTTCGTCCC 61.325 57.895 0.00 0.00 41.21 4.46
1572 11341 6.039717 TCCCGTACTGTACATATACTTTGGTC 59.960 42.308 17.35 0.00 32.00 4.02
1574 11346 7.137426 CCGTACTGTACATATACTTTGGTCTC 58.863 42.308 17.35 0.00 32.00 3.36
1711 12016 8.179509 ACAAGCCGTACTATGATTAGTTCTAT 57.820 34.615 0.00 0.00 39.42 1.98
1715 12020 9.682465 AGCCGTACTATGATTAGTTCTATCATA 57.318 33.333 0.00 0.00 41.61 2.15
1798 12103 4.530161 CCCTTCCTACCATCAGATCCTTAG 59.470 50.000 0.00 0.00 0.00 2.18
1887 12192 4.062293 TCGTTGAATCCGATTGAACAACT 58.938 39.130 19.38 0.00 39.72 3.16
2054 12386 1.668294 CTGCTGACCCGTCTTCTGT 59.332 57.895 0.00 0.00 0.00 3.41
2119 12452 1.526455 GGTGGCCACGGTTTGTACA 60.526 57.895 29.08 0.00 0.00 2.90
2127 12460 0.812412 ACGGTTTGTACAGCGCTTGT 60.812 50.000 7.50 12.61 41.43 3.16
2293 12626 9.226606 CTTCCTTACCATGTGTTAAATCTGTAA 57.773 33.333 0.00 0.00 0.00 2.41
2342 12675 7.849804 ACATAATTATCATATCCCGCACTTC 57.150 36.000 0.00 0.00 0.00 3.01
2409 12749 1.207089 TCCAGCAAGTACTCATTCCCG 59.793 52.381 0.00 0.00 0.00 5.14
2419 12759 2.679642 CATTCCCGGGCAAAGGCA 60.680 61.111 18.49 0.00 43.71 4.75
2465 12805 0.320421 GCCTTTGCCTCTGTACACGA 60.320 55.000 0.00 0.00 0.00 4.35
2485 12825 5.003804 ACGAAACTAGTGCATGGAAAGAAT 58.996 37.500 0.00 0.00 0.00 2.40
2554 12896 5.633830 GTGCCTATATTGCATGCACTTAT 57.366 39.130 22.58 21.16 46.56 1.73
2556 12898 4.460034 TGCCTATATTGCATGCACTTATGG 59.540 41.667 22.58 20.11 32.85 2.74
2557 12899 4.142315 GCCTATATTGCATGCACTTATGGG 60.142 45.833 29.64 29.64 31.71 4.00
2558 12900 5.012239 CCTATATTGCATGCACTTATGGGT 58.988 41.667 27.61 13.24 0.00 4.51
2559 12901 6.179756 CCTATATTGCATGCACTTATGGGTA 58.820 40.000 27.61 12.70 0.00 3.69
2560 12902 6.317140 CCTATATTGCATGCACTTATGGGTAG 59.683 42.308 27.61 18.52 0.00 3.18
2561 12903 1.679139 TGCATGCACTTATGGGTAGC 58.321 50.000 18.46 0.00 0.00 3.58
2562 12904 1.212688 TGCATGCACTTATGGGTAGCT 59.787 47.619 18.46 0.00 0.00 3.32
2572 12914 3.231298 GGGTAGCTAGTGCCCCAG 58.769 66.667 11.43 0.00 45.54 4.45
2574 12916 0.398098 GGGTAGCTAGTGCCCCAGTA 60.398 60.000 11.43 0.00 45.54 2.74
2643 12986 4.729868 GCCAAATCAGGTTCCATATAGGT 58.270 43.478 0.00 0.00 39.02 3.08
2644 12987 5.512404 CGCCAAATCAGGTTCCATATAGGTA 60.512 44.000 0.00 0.00 39.02 3.08
2645 12988 6.485171 GCCAAATCAGGTTCCATATAGGTAT 58.515 40.000 0.00 0.00 39.02 2.73
2646 12989 7.580688 CGCCAAATCAGGTTCCATATAGGTATA 60.581 40.741 0.00 0.00 39.02 1.47
2647 12990 7.553044 GCCAAATCAGGTTCCATATAGGTATAC 59.447 40.741 0.00 0.00 39.02 1.47
2648 12991 8.047310 CCAAATCAGGTTCCATATAGGTATACC 58.953 40.741 14.54 14.54 39.02 2.73
2659 13002 1.981259 AGGTATACCTGGCCAAACCT 58.019 50.000 24.01 11.93 46.55 3.50
2660 13003 1.844497 AGGTATACCTGGCCAAACCTC 59.156 52.381 24.01 0.00 46.55 3.85
2661 13004 1.474498 GGTATACCTGGCCAAACCTCG 60.474 57.143 15.09 0.00 40.22 4.63
2662 13005 0.834612 TATACCTGGCCAAACCTCGG 59.165 55.000 7.01 5.79 40.22 4.63
2663 13006 1.921869 ATACCTGGCCAAACCTCGGG 61.922 60.000 7.01 4.92 40.22 5.14
2686 13029 4.554036 CCTAGCCAAGCCCGAGCC 62.554 72.222 0.00 0.00 41.25 4.70
2687 13030 3.785859 CTAGCCAAGCCCGAGCCA 61.786 66.667 0.00 0.00 41.25 4.75
2688 13031 3.089874 TAGCCAAGCCCGAGCCAT 61.090 61.111 0.00 0.00 41.25 4.40
2689 13032 1.758440 CTAGCCAAGCCCGAGCCATA 61.758 60.000 0.00 0.00 41.25 2.74
2690 13033 1.341913 TAGCCAAGCCCGAGCCATAA 61.342 55.000 0.00 0.00 41.25 1.90
2691 13034 1.752694 GCCAAGCCCGAGCCATAAA 60.753 57.895 0.00 0.00 41.25 1.40
2692 13035 1.319614 GCCAAGCCCGAGCCATAAAA 61.320 55.000 0.00 0.00 41.25 1.52
2693 13036 0.455815 CCAAGCCCGAGCCATAAAAC 59.544 55.000 0.00 0.00 41.25 2.43
2694 13037 0.455815 CAAGCCCGAGCCATAAAACC 59.544 55.000 0.00 0.00 41.25 3.27
2695 13038 0.331616 AAGCCCGAGCCATAAAACCT 59.668 50.000 0.00 0.00 41.25 3.50
2696 13039 0.394352 AGCCCGAGCCATAAAACCTG 60.394 55.000 0.00 0.00 41.25 4.00
2697 13040 1.384222 GCCCGAGCCATAAAACCTGG 61.384 60.000 0.00 0.00 36.81 4.45
2698 13041 0.751643 CCCGAGCCATAAAACCTGGG 60.752 60.000 0.00 0.00 34.16 4.45
2699 13042 1.384222 CCGAGCCATAAAACCTGGGC 61.384 60.000 0.00 0.00 46.77 5.36
2701 13044 3.628989 GCCATAAAACCTGGGCCC 58.371 61.111 17.59 17.59 40.55 5.80
2702 13045 2.423064 GCCATAAAACCTGGGCCCG 61.423 63.158 19.37 12.19 40.55 6.13
2703 13046 1.304952 CCATAAAACCTGGGCCCGA 59.695 57.895 19.37 5.42 0.00 5.14
2704 13047 0.751643 CCATAAAACCTGGGCCCGAG 60.752 60.000 19.37 13.87 0.00 4.63
2705 13048 1.076995 ATAAAACCTGGGCCCGAGC 60.077 57.895 19.37 0.00 38.76 5.03
2740 13083 2.102578 CCATCAGGCCTAGTTTTTGGG 58.897 52.381 3.98 0.00 0.00 4.12
2744 13087 4.531351 GCCTAGTTTTTGGGCCCA 57.469 55.556 24.45 24.45 39.96 5.36
2745 13088 2.753319 GCCTAGTTTTTGGGCCCAA 58.247 52.632 34.07 34.07 39.96 4.12
2746 13089 0.608130 GCCTAGTTTTTGGGCCCAAG 59.392 55.000 35.02 23.09 39.96 3.61
2747 13090 0.608130 CCTAGTTTTTGGGCCCAAGC 59.392 55.000 35.02 27.17 37.24 4.01
2760 13103 2.996734 CAAGCCCGGCCCAAACAT 60.997 61.111 5.55 0.00 0.00 2.71
2761 13104 2.996734 AAGCCCGGCCCAAACATG 60.997 61.111 5.55 0.00 0.00 3.21
2764 13107 3.309506 CCCGGCCCAAACATGCAA 61.310 61.111 0.00 0.00 0.00 4.08
2765 13108 2.739784 CCGGCCCAAACATGCAAA 59.260 55.556 0.00 0.00 0.00 3.68
2766 13109 1.070445 CCGGCCCAAACATGCAAAA 59.930 52.632 0.00 0.00 0.00 2.44
2767 13110 0.950071 CCGGCCCAAACATGCAAAAG 60.950 55.000 0.00 0.00 0.00 2.27
2768 13111 1.567746 CGGCCCAAACATGCAAAAGC 61.568 55.000 0.00 0.00 0.00 3.51
2769 13112 1.236616 GGCCCAAACATGCAAAAGCC 61.237 55.000 0.00 0.00 0.00 4.35
2770 13113 1.236616 GCCCAAACATGCAAAAGCCC 61.237 55.000 0.00 0.00 0.00 5.19
2771 13114 0.950071 CCCAAACATGCAAAAGCCCG 60.950 55.000 0.00 0.00 0.00 6.13
2772 13115 1.567746 CCAAACATGCAAAAGCCCGC 61.568 55.000 0.00 0.00 0.00 6.13
2773 13116 1.301637 AAACATGCAAAAGCCCGCC 60.302 52.632 0.00 0.00 0.00 6.13
2774 13117 3.572196 AACATGCAAAAGCCCGCCG 62.572 57.895 0.00 0.00 0.00 6.46
2775 13118 4.799824 CATGCAAAAGCCCGCCGG 62.800 66.667 0.00 0.00 0.00 6.13
2799 13142 3.735097 GGCCGGGCCCCTTTAGAA 61.735 66.667 28.23 0.00 44.06 2.10
2800 13143 2.357446 GCCGGGCCCCTTTAGAAA 59.643 61.111 18.66 0.00 0.00 2.52
2801 13144 1.304630 GCCGGGCCCCTTTAGAAAA 60.305 57.895 18.66 0.00 0.00 2.29
2802 13145 1.601419 GCCGGGCCCCTTTAGAAAAC 61.601 60.000 18.66 0.00 0.00 2.43
2803 13146 0.039180 CCGGGCCCCTTTAGAAAACT 59.961 55.000 18.66 0.00 0.00 2.66
2804 13147 1.173913 CGGGCCCCTTTAGAAAACTG 58.826 55.000 18.66 0.00 0.00 3.16
2805 13148 0.895530 GGGCCCCTTTAGAAAACTGC 59.104 55.000 12.23 0.00 0.00 4.40
2806 13149 1.627864 GGCCCCTTTAGAAAACTGCA 58.372 50.000 0.00 0.00 0.00 4.41
2807 13150 1.967779 GGCCCCTTTAGAAAACTGCAA 59.032 47.619 0.00 0.00 0.00 4.08
2808 13151 2.367241 GGCCCCTTTAGAAAACTGCAAA 59.633 45.455 0.00 0.00 0.00 3.68
2809 13152 3.181459 GGCCCCTTTAGAAAACTGCAAAA 60.181 43.478 0.00 0.00 0.00 2.44
2810 13153 4.447290 GCCCCTTTAGAAAACTGCAAAAA 58.553 39.130 0.00 0.00 0.00 1.94
2811 13154 5.063204 GCCCCTTTAGAAAACTGCAAAAAT 58.937 37.500 0.00 0.00 0.00 1.82
2812 13155 5.049474 GCCCCTTTAGAAAACTGCAAAAATG 60.049 40.000 0.00 0.00 0.00 2.32
2813 13156 6.287525 CCCCTTTAGAAAACTGCAAAAATGA 58.712 36.000 0.00 0.00 0.00 2.57
2814 13157 6.936335 CCCCTTTAGAAAACTGCAAAAATGAT 59.064 34.615 0.00 0.00 0.00 2.45
2815 13158 7.095102 CCCCTTTAGAAAACTGCAAAAATGATG 60.095 37.037 0.00 0.00 0.00 3.07
2816 13159 7.095102 CCCTTTAGAAAACTGCAAAAATGATGG 60.095 37.037 0.00 0.00 0.00 3.51
2817 13160 7.095102 CCTTTAGAAAACTGCAAAAATGATGGG 60.095 37.037 0.00 0.00 0.00 4.00
2818 13161 4.067192 AGAAAACTGCAAAAATGATGGGC 58.933 39.130 0.00 0.00 0.00 5.36
2819 13162 2.477845 AACTGCAAAAATGATGGGCC 57.522 45.000 0.00 0.00 0.00 5.80
2820 13163 0.614812 ACTGCAAAAATGATGGGCCC 59.385 50.000 17.59 17.59 0.00 5.80
2821 13164 0.460635 CTGCAAAAATGATGGGCCCG 60.461 55.000 19.37 0.00 0.00 6.13
2822 13165 1.153389 GCAAAAATGATGGGCCCGG 60.153 57.895 19.37 0.00 0.00 5.73
2823 13166 1.153389 CAAAAATGATGGGCCCGGC 60.153 57.895 19.37 12.43 0.00 6.13
2844 13187 4.096003 GCCAGGCCACCGAGCTAA 62.096 66.667 5.01 0.00 0.00 3.09
2845 13188 2.668632 CCAGGCCACCGAGCTAAA 59.331 61.111 5.01 0.00 0.00 1.85
2846 13189 1.002624 CCAGGCCACCGAGCTAAAA 60.003 57.895 5.01 0.00 0.00 1.52
2847 13190 0.608035 CCAGGCCACCGAGCTAAAAA 60.608 55.000 5.01 0.00 0.00 1.94
2848 13191 1.463674 CAGGCCACCGAGCTAAAAAT 58.536 50.000 5.01 0.00 0.00 1.82
2849 13192 1.401905 CAGGCCACCGAGCTAAAAATC 59.598 52.381 5.01 0.00 0.00 2.17
2850 13193 1.282157 AGGCCACCGAGCTAAAAATCT 59.718 47.619 5.01 0.00 0.00 2.40
2851 13194 2.504175 AGGCCACCGAGCTAAAAATCTA 59.496 45.455 5.01 0.00 0.00 1.98
2852 13195 2.872858 GGCCACCGAGCTAAAAATCTAG 59.127 50.000 0.00 0.00 0.00 2.43
2853 13196 2.872858 GCCACCGAGCTAAAAATCTAGG 59.127 50.000 0.00 0.00 0.00 3.02
2854 13197 3.431766 GCCACCGAGCTAAAAATCTAGGA 60.432 47.826 0.00 0.00 0.00 2.94
2855 13198 4.120589 CCACCGAGCTAAAAATCTAGGAC 58.879 47.826 0.00 0.00 0.00 3.85
2856 13199 4.141914 CCACCGAGCTAAAAATCTAGGACT 60.142 45.833 0.00 0.00 0.00 3.85
2857 13200 5.068723 CCACCGAGCTAAAAATCTAGGACTA 59.931 44.000 0.00 0.00 0.00 2.59
2858 13201 6.406624 CCACCGAGCTAAAAATCTAGGACTAA 60.407 42.308 0.00 0.00 0.00 2.24
2859 13202 6.697892 CACCGAGCTAAAAATCTAGGACTAAG 59.302 42.308 0.00 0.00 0.00 2.18
2860 13203 5.692654 CCGAGCTAAAAATCTAGGACTAAGC 59.307 44.000 0.00 0.00 0.00 3.09
2861 13204 5.692654 CGAGCTAAAAATCTAGGACTAAGCC 59.307 44.000 0.00 0.00 0.00 4.35
2862 13205 5.931294 AGCTAAAAATCTAGGACTAAGCCC 58.069 41.667 0.00 0.00 0.00 5.19
2863 13206 4.750598 GCTAAAAATCTAGGACTAAGCCCG 59.249 45.833 0.00 0.00 0.00 6.13
2864 13207 3.840124 AAAATCTAGGACTAAGCCCGG 57.160 47.619 0.00 0.00 0.00 5.73
2865 13208 1.049402 AATCTAGGACTAAGCCCGGC 58.951 55.000 0.00 0.00 0.00 6.13
2866 13209 0.832559 ATCTAGGACTAAGCCCGGCC 60.833 60.000 5.55 0.00 0.00 6.13
2867 13210 2.445274 TAGGACTAAGCCCGGCCC 60.445 66.667 5.55 0.00 0.00 5.80
2901 13244 4.065281 CGAGACGGGTCGGGCTTT 62.065 66.667 1.00 0.00 36.26 3.51
2902 13245 2.346365 GAGACGGGTCGGGCTTTT 59.654 61.111 0.00 0.00 34.09 2.27
2903 13246 1.302271 GAGACGGGTCGGGCTTTTT 60.302 57.895 0.00 0.00 34.09 1.94
2904 13247 1.296755 GAGACGGGTCGGGCTTTTTC 61.297 60.000 0.00 0.00 34.09 2.29
2905 13248 2.667199 ACGGGTCGGGCTTTTTCG 60.667 61.111 0.00 0.00 0.00 3.46
2906 13249 3.428282 CGGGTCGGGCTTTTTCGG 61.428 66.667 0.00 0.00 0.00 4.30
2907 13250 3.060000 GGGTCGGGCTTTTTCGGG 61.060 66.667 0.00 0.00 0.00 5.14
2908 13251 3.744719 GGTCGGGCTTTTTCGGGC 61.745 66.667 0.00 0.00 0.00 6.13
2909 13252 3.744719 GTCGGGCTTTTTCGGGCC 61.745 66.667 0.00 0.00 46.89 5.80
2915 13258 3.747976 CTTTTTCGGGCCGGGCTG 61.748 66.667 30.31 30.31 0.00 4.85
2932 13275 2.193248 GCCCATGGCCAGGTCTAC 59.807 66.667 17.55 0.00 44.06 2.59
2933 13276 2.679342 GCCCATGGCCAGGTCTACA 61.679 63.158 17.55 0.00 44.06 2.74
2934 13277 1.999634 GCCCATGGCCAGGTCTACAT 62.000 60.000 17.55 0.00 44.06 2.29
2935 13278 1.434188 CCCATGGCCAGGTCTACATA 58.566 55.000 17.55 0.00 0.00 2.29
2936 13279 1.988107 CCCATGGCCAGGTCTACATAT 59.012 52.381 17.55 0.00 0.00 1.78
2937 13280 3.181329 CCCATGGCCAGGTCTACATATA 58.819 50.000 17.55 0.00 0.00 0.86
2938 13281 3.198635 CCCATGGCCAGGTCTACATATAG 59.801 52.174 17.55 0.00 0.00 1.31
2939 13282 3.198635 CCATGGCCAGGTCTACATATAGG 59.801 52.174 17.55 0.00 0.00 2.57
2940 13283 2.257207 TGGCCAGGTCTACATATAGGC 58.743 52.381 0.00 0.00 39.86 3.93
2952 13295 8.079211 GTCTACATATAGGCCTATTTCCATCA 57.921 38.462 29.91 11.03 0.00 3.07
2953 13296 8.200792 GTCTACATATAGGCCTATTTCCATCAG 58.799 40.741 29.91 16.75 0.00 2.90
2954 13297 6.319048 ACATATAGGCCTATTTCCATCAGG 57.681 41.667 29.91 14.25 0.00 3.86
2960 13303 3.853355 CCTATTTCCATCAGGCTCACT 57.147 47.619 0.00 0.00 33.74 3.41
2969 13312 3.062585 CAGGCTCACTGCTAGAAGC 57.937 57.895 0.00 0.00 40.97 3.86
2970 13313 0.461693 CAGGCTCACTGCTAGAAGCC 60.462 60.000 17.63 17.63 41.51 4.35
2971 13314 0.617249 AGGCTCACTGCTAGAAGCCT 60.617 55.000 20.02 20.02 46.58 4.58
2972 13315 0.179086 GGCTCACTGCTAGAAGCCTC 60.179 60.000 17.84 0.00 41.51 4.70
2973 13316 0.534412 GCTCACTGCTAGAAGCCTCA 59.466 55.000 0.00 0.00 41.51 3.86
2974 13317 1.738700 GCTCACTGCTAGAAGCCTCAC 60.739 57.143 0.00 0.00 41.51 3.51
2975 13318 0.898320 TCACTGCTAGAAGCCTCACC 59.102 55.000 0.00 0.00 41.51 4.02
2976 13319 0.610174 CACTGCTAGAAGCCTCACCA 59.390 55.000 0.00 0.00 41.51 4.17
2977 13320 0.901124 ACTGCTAGAAGCCTCACCAG 59.099 55.000 0.00 0.00 41.51 4.00
2978 13321 0.461693 CTGCTAGAAGCCTCACCAGC 60.462 60.000 0.00 0.00 41.51 4.85
2979 13322 1.194121 TGCTAGAAGCCTCACCAGCA 61.194 55.000 0.00 3.05 41.51 4.41
2980 13323 0.179936 GCTAGAAGCCTCACCAGCAT 59.820 55.000 0.00 0.00 34.48 3.79
2981 13324 1.950828 CTAGAAGCCTCACCAGCATG 58.049 55.000 0.00 0.00 0.00 4.06
2982 13325 1.483827 CTAGAAGCCTCACCAGCATGA 59.516 52.381 0.00 0.00 39.69 3.07
2983 13326 0.694771 AGAAGCCTCACCAGCATGAA 59.305 50.000 0.00 0.00 39.69 2.57
2984 13327 1.093159 GAAGCCTCACCAGCATGAAG 58.907 55.000 0.00 0.00 39.69 3.02
2985 13328 0.964358 AAGCCTCACCAGCATGAAGC 60.964 55.000 0.00 0.00 39.69 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 4518 9.364989 CATTTTAGCTATCTAAGAGCATACTCC 57.635 37.037 0.00 0.00 44.65 3.85
48 4548 7.548427 CGATTCAAGGAGCATTGATATAGATGT 59.452 37.037 0.00 0.00 38.90 3.06
49 4549 7.548427 ACGATTCAAGGAGCATTGATATAGATG 59.452 37.037 0.00 0.00 38.90 2.90
59 4559 4.769688 TGATACACGATTCAAGGAGCATT 58.230 39.130 0.00 0.00 0.00 3.56
80 4580 6.543465 TGCATGGGTATTCTCTAGTTTCATTG 59.457 38.462 0.00 0.00 0.00 2.82
105 4617 3.726557 TCAGCCAATTCTCACAGGAAT 57.273 42.857 0.00 0.00 37.51 3.01
112 4624 9.466497 AGTAAAAGATATTTCAGCCAATTCTCA 57.534 29.630 0.00 0.00 0.00 3.27
125 4637 9.860898 GCAACCAAATCTCAGTAAAAGATATTT 57.139 29.630 0.00 0.00 33.15 1.40
258 4770 0.753262 AAGACACCTCGACAAGCAGT 59.247 50.000 0.00 0.00 0.00 4.40
259 4771 1.871080 AAAGACACCTCGACAAGCAG 58.129 50.000 0.00 0.00 0.00 4.24
261 4773 1.531578 GGAAAAGACACCTCGACAAGC 59.468 52.381 0.00 0.00 0.00 4.01
262 4774 2.802816 CAGGAAAAGACACCTCGACAAG 59.197 50.000 0.00 0.00 33.91 3.16
263 4775 2.169769 ACAGGAAAAGACACCTCGACAA 59.830 45.455 0.00 0.00 33.91 3.18
265 4777 2.135933 CACAGGAAAAGACACCTCGAC 58.864 52.381 0.00 0.00 33.91 4.20
266 4778 1.760613 ACACAGGAAAAGACACCTCGA 59.239 47.619 0.00 0.00 33.91 4.04
267 4779 2.240493 ACACAGGAAAAGACACCTCG 57.760 50.000 0.00 0.00 33.91 4.63
270 4785 3.751518 ACCATACACAGGAAAAGACACC 58.248 45.455 0.00 0.00 0.00 4.16
343 6731 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
345 6733 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
347 6735 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
349 6737 2.917701 ATTGTGTGTGTGTGTGTGTG 57.082 45.000 0.00 0.00 0.00 3.82
351 6739 4.809815 TGATATTGTGTGTGTGTGTGTG 57.190 40.909 0.00 0.00 0.00 3.82
353 6741 5.564882 CGATTTGATATTGTGTGTGTGTGTG 59.435 40.000 0.00 0.00 0.00 3.82
355 6743 5.925907 TCGATTTGATATTGTGTGTGTGTG 58.074 37.500 0.00 0.00 0.00 3.82
356 6744 6.741992 ATCGATTTGATATTGTGTGTGTGT 57.258 33.333 0.00 0.00 34.83 3.72
357 6745 7.909267 ACTATCGATTTGATATTGTGTGTGTG 58.091 34.615 1.71 0.00 38.85 3.82
359 6747 8.064222 GGAACTATCGATTTGATATTGTGTGTG 58.936 37.037 1.71 0.00 38.85 3.82
361 6749 8.141835 TGGAACTATCGATTTGATATTGTGTG 57.858 34.615 1.71 0.00 38.85 3.82
371 6759 8.837059 CGTTTAGTTTTTGGAACTATCGATTTG 58.163 33.333 1.71 0.00 35.06 2.32
372 6760 8.776470 TCGTTTAGTTTTTGGAACTATCGATTT 58.224 29.630 1.71 0.00 36.09 2.17
373 6761 8.314143 TCGTTTAGTTTTTGGAACTATCGATT 57.686 30.769 1.71 0.00 36.09 3.34
374 6762 7.894376 TCGTTTAGTTTTTGGAACTATCGAT 57.106 32.000 2.16 2.16 36.09 3.59
375 6763 7.712264 TTCGTTTAGTTTTTGGAACTATCGA 57.288 32.000 15.53 15.53 37.50 3.59
376 6764 8.770850 TTTTCGTTTAGTTTTTGGAACTATCG 57.229 30.769 12.94 12.94 33.27 2.92
377 6765 9.177304 CCTTTTCGTTTAGTTTTTGGAACTATC 57.823 33.333 0.03 0.00 33.27 2.08
378 6766 8.689061 ACCTTTTCGTTTAGTTTTTGGAACTAT 58.311 29.630 0.03 0.00 33.27 2.12
379 6767 7.969508 CACCTTTTCGTTTAGTTTTTGGAACTA 59.030 33.333 0.00 0.00 0.00 2.24
396 6811 0.179174 GGCGGTTATGCACCTTTTCG 60.179 55.000 0.00 0.00 44.69 3.46
441 6859 1.308998 CTTTGTGCGGACCAGAACTT 58.691 50.000 4.04 0.00 0.00 2.66
452 6870 1.657181 GTTCCGGCAACTTTGTGCG 60.657 57.895 0.00 0.00 45.91 5.34
492 6949 1.275573 AGCGAAACTTCAGAGGGGTAC 59.724 52.381 0.00 0.00 0.00 3.34
500 7113 1.466167 CATGGTGGAGCGAAACTTCAG 59.534 52.381 0.00 0.00 33.18 3.02
536 7149 1.967066 ACGGATCTTCTAGATGCCCTG 59.033 52.381 0.00 0.00 39.55 4.45
546 7159 1.066573 CCTTGCTGTGACGGATCTTCT 60.067 52.381 0.00 0.00 0.00 2.85
575 7188 1.280457 GAGGGTGGTGGTCATCTCTT 58.720 55.000 0.00 0.00 0.00 2.85
602 7223 2.584608 CTCGATGTTTCCGGGCCT 59.415 61.111 0.84 0.00 0.00 5.19
626 7248 5.923204 AGAGGGAGTAGCAACAAATCATAG 58.077 41.667 0.00 0.00 0.00 2.23
647 7269 9.343539 TCTCGATGATAGATTTACAAAGAGAGA 57.656 33.333 0.00 0.00 31.81 3.10
648 7270 9.958234 TTCTCGATGATAGATTTACAAAGAGAG 57.042 33.333 0.00 0.00 34.49 3.20
658 7280 9.565090 TCAAATCCATTTCTCGATGATAGATTT 57.435 29.630 0.00 0.00 31.50 2.17
667 7289 6.403636 CCGAAACTTCAAATCCATTTCTCGAT 60.404 38.462 0.00 0.00 0.00 3.59
674 7296 3.320541 TGTGCCGAAACTTCAAATCCATT 59.679 39.130 0.00 0.00 0.00 3.16
696 7322 1.067212 GGTTAGTCGAGTCATGGCGAT 59.933 52.381 0.00 3.17 38.91 4.58
706 7332 1.067071 GGGGTTGTGAGGTTAGTCGAG 60.067 57.143 0.00 0.00 0.00 4.04
734 7360 3.269381 TCAAGGGGATTGCTGATTTACCT 59.731 43.478 0.00 0.00 38.89 3.08
752 7382 3.822735 ACCAATGATTATGCCCGATCAAG 59.177 43.478 0.00 0.00 36.03 3.02
754 7384 3.148412 CACCAATGATTATGCCCGATCA 58.852 45.455 0.00 0.00 36.77 2.92
755 7385 3.149196 ACACCAATGATTATGCCCGATC 58.851 45.455 0.00 0.00 0.00 3.69
756 7386 3.228188 ACACCAATGATTATGCCCGAT 57.772 42.857 0.00 0.00 0.00 4.18
757 7387 2.727123 ACACCAATGATTATGCCCGA 57.273 45.000 0.00 0.00 0.00 5.14
758 7388 3.250762 CACTACACCAATGATTATGCCCG 59.749 47.826 0.00 0.00 0.00 6.13
761 7391 6.127758 TGTTTCCACTACACCAATGATTATGC 60.128 38.462 0.00 0.00 0.00 3.14
820 7466 6.821160 TCATCGTGCTTTGTTGATCCTTATTA 59.179 34.615 0.00 0.00 0.00 0.98
890 7555 0.842030 ACCAGCCCATGAGAAGGACA 60.842 55.000 0.00 0.00 0.00 4.02
947 7612 4.953868 TCACCAACGTCCACCGCG 62.954 66.667 0.00 0.00 41.42 6.46
948 7613 3.343421 GTCACCAACGTCCACCGC 61.343 66.667 0.00 0.00 41.42 5.68
949 7614 2.663852 GGTCACCAACGTCCACCG 60.664 66.667 0.00 0.00 44.03 4.94
954 7619 1.668151 GCAGAGGGTCACCAACGTC 60.668 63.158 0.00 0.00 40.13 4.34
964 7633 2.995574 AGCGTTACGGCAGAGGGT 60.996 61.111 6.94 0.00 34.64 4.34
973 7642 4.483243 ATGGGGGCCAGCGTTACG 62.483 66.667 4.39 0.00 36.75 3.18
974 7643 2.828549 CATGGGGGCCAGCGTTAC 60.829 66.667 4.39 0.00 36.75 2.50
975 7644 3.012119 TCATGGGGGCCAGCGTTA 61.012 61.111 4.39 0.00 36.75 3.18
976 7645 4.431131 CTCATGGGGGCCAGCGTT 62.431 66.667 4.39 0.00 36.75 4.84
978 7647 3.839353 GATCTCATGGGGGCCAGCG 62.839 68.421 4.39 0.00 36.75 5.18
979 7648 2.114838 GATCTCATGGGGGCCAGC 59.885 66.667 4.39 0.00 36.75 4.85
980 7649 1.150081 GTGATCTCATGGGGGCCAG 59.850 63.158 4.39 0.00 36.75 4.85
981 7650 2.386100 GGTGATCTCATGGGGGCCA 61.386 63.158 4.39 0.00 38.19 5.36
982 7651 2.386100 TGGTGATCTCATGGGGGCC 61.386 63.158 0.00 0.00 0.00 5.80
985 7654 0.107017 GTGGTGGTGATCTCATGGGG 60.107 60.000 0.00 0.00 0.00 4.96
996 7665 1.604378 GAGGAGGATGGTGGTGGTG 59.396 63.158 0.00 0.00 0.00 4.17
997 7666 1.616628 GGAGGAGGATGGTGGTGGT 60.617 63.158 0.00 0.00 0.00 4.16
1001 7670 0.327000 AAGGAGGAGGAGGATGGTGG 60.327 60.000 0.00 0.00 0.00 4.61
1002 7671 1.589414 AAAGGAGGAGGAGGATGGTG 58.411 55.000 0.00 0.00 0.00 4.17
1003 7672 1.918957 CAAAAGGAGGAGGAGGATGGT 59.081 52.381 0.00 0.00 0.00 3.55
1004 7673 1.213926 CCAAAAGGAGGAGGAGGATGG 59.786 57.143 0.00 0.00 0.00 3.51
1006 7675 1.601248 CCCAAAAGGAGGAGGAGGAT 58.399 55.000 0.00 0.00 38.24 3.24
1007 7676 1.208165 GCCCAAAAGGAGGAGGAGGA 61.208 60.000 0.00 0.00 38.24 3.71
1008 7677 1.210885 AGCCCAAAAGGAGGAGGAGG 61.211 60.000 0.00 0.00 38.24 4.30
1012 7793 1.615384 CCTTCAGCCCAAAAGGAGGAG 60.615 57.143 0.00 0.00 44.02 3.69
1021 7802 2.347490 GCGTCTCCTTCAGCCCAA 59.653 61.111 0.00 0.00 0.00 4.12
1022 7803 3.706373 GGCGTCTCCTTCAGCCCA 61.706 66.667 0.00 0.00 43.54 5.36
1023 7804 4.821589 CGGCGTCTCCTTCAGCCC 62.822 72.222 0.00 0.00 46.36 5.19
1025 7806 4.443266 AGCGGCGTCTCCTTCAGC 62.443 66.667 9.37 0.00 0.00 4.26
1026 7807 2.507992 CAGCGGCGTCTCCTTCAG 60.508 66.667 9.37 0.00 0.00 3.02
1027 7808 4.742201 GCAGCGGCGTCTCCTTCA 62.742 66.667 9.37 0.00 0.00 3.02
1058 10702 4.415150 AGCGTCATGGCCACCAGG 62.415 66.667 8.16 4.04 36.75 4.45
1060 10704 4.720902 CCAGCGTCATGGCCACCA 62.721 66.667 8.16 0.00 38.19 4.17
1068 10751 4.511246 CATGGGGGCCAGCGTCAT 62.511 66.667 4.39 0.00 36.75 3.06
1089 10772 0.909610 GAGGAGGATGGTGGTGGTGA 60.910 60.000 0.00 0.00 0.00 4.02
1098 10787 1.213926 CCAAAAGGAGGAGGAGGATGG 59.786 57.143 0.00 0.00 0.00 3.51
1101 10790 1.208165 GCCCAAAAGGAGGAGGAGGA 61.208 60.000 0.00 0.00 38.24 3.71
1291 10983 1.340568 GGTCGGATTGTAGGTAGAGGC 59.659 57.143 0.00 0.00 0.00 4.70
1373 11065 1.136774 CTTCTCGCCGTCGTCATCA 59.863 57.895 0.00 0.00 36.96 3.07
1374 11066 2.224885 GCTTCTCGCCGTCGTCATC 61.225 63.158 0.00 0.00 36.96 2.92
1375 11067 2.202623 GCTTCTCGCCGTCGTCAT 60.203 61.111 0.00 0.00 36.96 3.06
1517 11286 0.515127 TGCTTGCAACCGAATACGTG 59.485 50.000 0.00 0.00 37.88 4.49
1550 11319 7.928103 AGAGACCAAAGTATATGTACAGTACG 58.072 38.462 0.33 0.00 33.09 3.67
1711 12016 8.159447 AGTAGCAGATTATCTGGCAAATTATGA 58.841 33.333 21.90 0.00 44.43 2.15
1715 12020 6.599445 AGAGTAGCAGATTATCTGGCAAATT 58.401 36.000 21.90 5.82 44.43 1.82
1727 12032 4.591072 GGGACCAGAATAGAGTAGCAGATT 59.409 45.833 0.00 0.00 0.00 2.40
1798 12103 4.888326 ATGGGCATCTCATCTTAGAGAC 57.112 45.455 0.00 0.00 46.58 3.36
1887 12192 3.136763 CGAGCATACTACTCTTCCGGTA 58.863 50.000 0.00 0.00 31.71 4.02
2054 12386 0.984230 AGTGGATGGCTCCTTTTCGA 59.016 50.000 4.92 0.00 42.59 3.71
2103 12435 1.894756 GCTGTACAAACCGTGGCCA 60.895 57.895 0.00 0.00 0.00 5.36
2119 12452 2.256117 ACTAAGAAACCACAAGCGCT 57.744 45.000 2.64 2.64 0.00 5.92
2127 12460 3.387374 TGACGGTACCAACTAAGAAACCA 59.613 43.478 13.54 0.00 0.00 3.67
2293 12626 1.598130 GGCGAGTGTGGCAAGTTCT 60.598 57.895 0.00 0.00 0.00 3.01
2342 12675 2.399396 ACTTGCAAATTGTTCGGACG 57.601 45.000 0.00 0.00 0.00 4.79
2409 12749 0.888619 GTTCTAGGTTGCCTTTGCCC 59.111 55.000 0.00 0.00 34.61 5.36
2419 12759 2.017049 GAATGGCATGCGTTCTAGGTT 58.983 47.619 20.78 5.16 0.00 3.50
2465 12805 6.294731 GGACAATTCTTTCCATGCACTAGTTT 60.295 38.462 0.00 0.00 0.00 2.66
2485 12825 5.997746 CACTTTGTGGATTAGAAGAGGACAA 59.002 40.000 0.00 0.00 0.00 3.18
2541 12881 2.023673 GCTACCCATAAGTGCATGCAA 58.976 47.619 24.58 7.64 0.00 4.08
2553 12895 1.004230 TGGGGCACTAGCTACCCAT 59.996 57.895 17.38 0.00 44.32 4.00
2554 12896 1.689233 CTGGGGCACTAGCTACCCA 60.689 63.158 16.77 16.77 46.17 4.51
2556 12898 1.138464 GTTACTGGGGCACTAGCTACC 59.862 57.143 0.00 0.00 41.70 3.18
2557 12899 1.138464 GGTTACTGGGGCACTAGCTAC 59.862 57.143 0.00 0.00 41.70 3.58
2558 12900 1.492764 GGTTACTGGGGCACTAGCTA 58.507 55.000 0.00 0.00 41.70 3.32
2559 12901 1.614241 CGGTTACTGGGGCACTAGCT 61.614 60.000 0.00 0.00 41.70 3.32
2560 12902 1.153429 CGGTTACTGGGGCACTAGC 60.153 63.158 0.00 0.00 41.10 3.42
2561 12903 1.153429 GCGGTTACTGGGGCACTAG 60.153 63.158 0.00 0.00 0.00 2.57
2562 12904 2.662070 GGCGGTTACTGGGGCACTA 61.662 63.158 0.00 0.00 0.00 2.74
2643 12986 0.834612 CCGAGGTTTGGCCAGGTATA 59.165 55.000 5.11 0.00 40.61 1.47
2644 12987 1.607612 CCGAGGTTTGGCCAGGTAT 59.392 57.895 5.11 0.00 40.61 2.73
2645 12988 2.598787 CCCGAGGTTTGGCCAGGTA 61.599 63.158 5.11 0.00 40.61 3.08
2646 12989 3.966543 CCCGAGGTTTGGCCAGGT 61.967 66.667 5.11 0.00 40.61 4.00
2669 13012 4.554036 GGCTCGGGCTTGGCTAGG 62.554 72.222 7.48 0.00 38.73 3.02
2670 13013 1.758440 TATGGCTCGGGCTTGGCTAG 61.758 60.000 7.48 0.00 38.73 3.42
2671 13014 1.341913 TTATGGCTCGGGCTTGGCTA 61.342 55.000 7.48 0.00 38.73 3.93
2672 13015 2.210144 TTTATGGCTCGGGCTTGGCT 62.210 55.000 7.48 0.00 38.73 4.75
2673 13016 1.319614 TTTTATGGCTCGGGCTTGGC 61.320 55.000 7.48 0.00 38.73 4.52
2674 13017 0.455815 GTTTTATGGCTCGGGCTTGG 59.544 55.000 7.48 0.00 38.73 3.61
2675 13018 0.455815 GGTTTTATGGCTCGGGCTTG 59.544 55.000 7.48 0.00 38.73 4.01
2676 13019 0.331616 AGGTTTTATGGCTCGGGCTT 59.668 50.000 7.48 0.00 38.73 4.35
2677 13020 0.394352 CAGGTTTTATGGCTCGGGCT 60.394 55.000 7.48 0.00 38.73 5.19
2678 13021 1.384222 CCAGGTTTTATGGCTCGGGC 61.384 60.000 0.00 0.00 37.82 6.13
2679 13022 0.751643 CCCAGGTTTTATGGCTCGGG 60.752 60.000 0.00 0.00 36.43 5.14
2680 13023 1.384222 GCCCAGGTTTTATGGCTCGG 61.384 60.000 0.00 0.00 40.77 4.63
2681 13024 1.384222 GGCCCAGGTTTTATGGCTCG 61.384 60.000 0.00 0.00 43.50 5.03
2682 13025 1.043116 GGGCCCAGGTTTTATGGCTC 61.043 60.000 19.95 0.00 43.50 4.70
2683 13026 1.001631 GGGCCCAGGTTTTATGGCT 59.998 57.895 19.95 0.00 43.50 4.75
2684 13027 2.423064 CGGGCCCAGGTTTTATGGC 61.423 63.158 24.92 0.00 43.26 4.40
2685 13028 0.751643 CTCGGGCCCAGGTTTTATGG 60.752 60.000 24.92 0.23 37.58 2.74
2686 13029 1.384222 GCTCGGGCCCAGGTTTTATG 61.384 60.000 24.92 1.11 0.00 1.90
2687 13030 1.076995 GCTCGGGCCCAGGTTTTAT 60.077 57.895 24.92 0.00 0.00 1.40
2688 13031 2.353573 GCTCGGGCCCAGGTTTTA 59.646 61.111 24.92 0.00 0.00 1.52
2720 13063 2.102578 CCCAAAAACTAGGCCTGATGG 58.897 52.381 17.99 13.62 0.00 3.51
2721 13064 1.478105 GCCCAAAAACTAGGCCTGATG 59.522 52.381 17.99 8.17 41.00 3.07
2722 13065 1.852633 GCCCAAAAACTAGGCCTGAT 58.147 50.000 17.99 0.00 41.00 2.90
2723 13066 3.356814 GCCCAAAAACTAGGCCTGA 57.643 52.632 17.99 0.00 41.00 3.86
2727 13070 0.608130 CTTGGGCCCAAAAACTAGGC 59.392 55.000 36.16 0.00 46.37 3.93
2728 13071 0.608130 GCTTGGGCCCAAAAACTAGG 59.392 55.000 36.16 23.64 35.33 3.02
2743 13086 2.996734 ATGTTTGGGCCGGGCTTG 60.997 61.111 28.80 0.00 0.00 4.01
2744 13087 2.996734 CATGTTTGGGCCGGGCTT 60.997 61.111 28.80 3.19 0.00 4.35
2747 13090 2.388890 TTTTGCATGTTTGGGCCGGG 62.389 55.000 2.18 0.00 0.00 5.73
2748 13091 0.950071 CTTTTGCATGTTTGGGCCGG 60.950 55.000 0.00 0.00 0.00 6.13
2749 13092 1.567746 GCTTTTGCATGTTTGGGCCG 61.568 55.000 0.00 0.00 46.58 6.13
2750 13093 2.246841 GCTTTTGCATGTTTGGGCC 58.753 52.632 0.00 0.00 46.58 5.80
2783 13126 1.304630 TTTTCTAAAGGGGCCCGGC 60.305 57.895 18.95 1.91 0.00 6.13
2784 13127 0.039180 AGTTTTCTAAAGGGGCCCGG 59.961 55.000 18.95 9.21 0.00 5.73
2785 13128 1.173913 CAGTTTTCTAAAGGGGCCCG 58.826 55.000 18.95 2.19 0.00 6.13
2786 13129 0.895530 GCAGTTTTCTAAAGGGGCCC 59.104 55.000 17.12 17.12 0.00 5.80
2787 13130 1.627864 TGCAGTTTTCTAAAGGGGCC 58.372 50.000 0.00 0.00 0.00 5.80
2788 13131 3.744238 TTTGCAGTTTTCTAAAGGGGC 57.256 42.857 0.00 0.00 0.00 5.80
2789 13132 6.287525 TCATTTTTGCAGTTTTCTAAAGGGG 58.712 36.000 0.00 0.00 0.00 4.79
2790 13133 7.095102 CCATCATTTTTGCAGTTTTCTAAAGGG 60.095 37.037 0.00 0.00 0.00 3.95
2791 13134 7.095102 CCCATCATTTTTGCAGTTTTCTAAAGG 60.095 37.037 0.00 0.00 0.00 3.11
2792 13135 7.571798 GCCCATCATTTTTGCAGTTTTCTAAAG 60.572 37.037 0.00 0.00 0.00 1.85
2793 13136 6.204495 GCCCATCATTTTTGCAGTTTTCTAAA 59.796 34.615 0.00 0.00 0.00 1.85
2794 13137 5.700373 GCCCATCATTTTTGCAGTTTTCTAA 59.300 36.000 0.00 0.00 0.00 2.10
2795 13138 5.237048 GCCCATCATTTTTGCAGTTTTCTA 58.763 37.500 0.00 0.00 0.00 2.10
2796 13139 4.067192 GCCCATCATTTTTGCAGTTTTCT 58.933 39.130 0.00 0.00 0.00 2.52
2797 13140 3.189080 GGCCCATCATTTTTGCAGTTTTC 59.811 43.478 0.00 0.00 0.00 2.29
2798 13141 3.148412 GGCCCATCATTTTTGCAGTTTT 58.852 40.909 0.00 0.00 0.00 2.43
2799 13142 2.552809 GGGCCCATCATTTTTGCAGTTT 60.553 45.455 19.95 0.00 0.00 2.66
2800 13143 1.003464 GGGCCCATCATTTTTGCAGTT 59.997 47.619 19.95 0.00 0.00 3.16
2801 13144 0.614812 GGGCCCATCATTTTTGCAGT 59.385 50.000 19.95 0.00 0.00 4.40
2802 13145 0.460635 CGGGCCCATCATTTTTGCAG 60.461 55.000 24.92 0.00 0.00 4.41
2803 13146 1.595882 CGGGCCCATCATTTTTGCA 59.404 52.632 24.92 0.00 0.00 4.08
2804 13147 1.153389 CCGGGCCCATCATTTTTGC 60.153 57.895 24.92 0.00 0.00 3.68
2805 13148 1.153389 GCCGGGCCCATCATTTTTG 60.153 57.895 24.92 0.78 0.00 2.44
2806 13149 2.366393 GGCCGGGCCCATCATTTTT 61.366 57.895 28.23 0.00 44.06 1.94
2807 13150 2.763710 GGCCGGGCCCATCATTTT 60.764 61.111 28.23 0.00 44.06 1.82
2827 13170 3.622060 TTTAGCTCGGTGGCCTGGC 62.622 63.158 11.05 11.05 0.00 4.85
2828 13171 0.608035 TTTTTAGCTCGGTGGCCTGG 60.608 55.000 3.32 0.00 0.00 4.45
2829 13172 1.401905 GATTTTTAGCTCGGTGGCCTG 59.598 52.381 3.32 0.00 0.00 4.85
2830 13173 1.282157 AGATTTTTAGCTCGGTGGCCT 59.718 47.619 3.32 0.00 0.00 5.19
2831 13174 1.751437 AGATTTTTAGCTCGGTGGCC 58.249 50.000 0.00 0.00 0.00 5.36
2832 13175 2.872858 CCTAGATTTTTAGCTCGGTGGC 59.127 50.000 0.00 0.00 0.00 5.01
2833 13176 4.120589 GTCCTAGATTTTTAGCTCGGTGG 58.879 47.826 0.00 0.00 0.00 4.61
2834 13177 5.012328 AGTCCTAGATTTTTAGCTCGGTG 57.988 43.478 0.00 0.00 0.00 4.94
2835 13178 6.683360 GCTTAGTCCTAGATTTTTAGCTCGGT 60.683 42.308 0.00 0.00 0.00 4.69
2836 13179 5.692654 GCTTAGTCCTAGATTTTTAGCTCGG 59.307 44.000 0.00 0.00 0.00 4.63
2837 13180 5.692654 GGCTTAGTCCTAGATTTTTAGCTCG 59.307 44.000 0.00 0.00 0.00 5.03
2838 13181 5.992829 GGGCTTAGTCCTAGATTTTTAGCTC 59.007 44.000 0.00 0.00 0.00 4.09
2839 13182 5.453480 CGGGCTTAGTCCTAGATTTTTAGCT 60.453 44.000 0.00 0.00 0.00 3.32
2840 13183 4.750598 CGGGCTTAGTCCTAGATTTTTAGC 59.249 45.833 0.00 0.00 0.00 3.09
2841 13184 5.298347 CCGGGCTTAGTCCTAGATTTTTAG 58.702 45.833 0.00 0.00 0.00 1.85
2842 13185 4.443881 GCCGGGCTTAGTCCTAGATTTTTA 60.444 45.833 12.87 0.00 0.00 1.52
2843 13186 3.684697 GCCGGGCTTAGTCCTAGATTTTT 60.685 47.826 12.87 0.00 0.00 1.94
2844 13187 2.158798 GCCGGGCTTAGTCCTAGATTTT 60.159 50.000 12.87 0.00 0.00 1.82
2845 13188 1.416772 GCCGGGCTTAGTCCTAGATTT 59.583 52.381 12.87 0.00 0.00 2.17
2846 13189 1.049402 GCCGGGCTTAGTCCTAGATT 58.951 55.000 12.87 0.00 0.00 2.40
2847 13190 0.832559 GGCCGGGCTTAGTCCTAGAT 60.833 60.000 22.87 0.00 0.00 1.98
2848 13191 1.457079 GGCCGGGCTTAGTCCTAGA 60.457 63.158 22.87 0.00 0.00 2.43
2849 13192 2.508751 GGGCCGGGCTTAGTCCTAG 61.509 68.421 28.80 0.00 0.00 3.02
2850 13193 2.445274 GGGCCGGGCTTAGTCCTA 60.445 66.667 28.80 0.00 0.00 2.94
2877 13220 4.754667 GACCCGTCTCGGCCCAAC 62.755 72.222 0.00 0.00 46.86 3.77
2884 13227 3.584868 AAAAGCCCGACCCGTCTCG 62.585 63.158 0.00 0.00 0.00 4.04
2885 13228 1.296755 GAAAAAGCCCGACCCGTCTC 61.297 60.000 0.00 0.00 0.00 3.36
2886 13229 1.302271 GAAAAAGCCCGACCCGTCT 60.302 57.895 0.00 0.00 0.00 4.18
2887 13230 2.674084 CGAAAAAGCCCGACCCGTC 61.674 63.158 0.00 0.00 0.00 4.79
2888 13231 2.667199 CGAAAAAGCCCGACCCGT 60.667 61.111 0.00 0.00 0.00 5.28
2889 13232 3.428282 CCGAAAAAGCCCGACCCG 61.428 66.667 0.00 0.00 0.00 5.28
2890 13233 3.060000 CCCGAAAAAGCCCGACCC 61.060 66.667 0.00 0.00 0.00 4.46
2891 13234 3.744719 GCCCGAAAAAGCCCGACC 61.745 66.667 0.00 0.00 0.00 4.79
2892 13235 3.744719 GGCCCGAAAAAGCCCGAC 61.745 66.667 0.00 0.00 43.76 4.79
2898 13241 3.747976 CAGCCCGGCCCGAAAAAG 61.748 66.667 3.71 0.00 0.00 2.27
2916 13259 1.434188 TATGTAGACCTGGCCATGGG 58.566 55.000 20.97 16.10 0.00 4.00
2917 13260 3.198635 CCTATATGTAGACCTGGCCATGG 59.801 52.174 5.51 13.05 0.00 3.66
2918 13261 3.369892 GCCTATATGTAGACCTGGCCATG 60.370 52.174 5.51 6.06 33.45 3.66
2919 13262 2.840651 GCCTATATGTAGACCTGGCCAT 59.159 50.000 5.51 0.00 33.45 4.40
2920 13263 2.257207 GCCTATATGTAGACCTGGCCA 58.743 52.381 4.71 4.71 33.45 5.36
2922 13265 2.541466 AGGCCTATATGTAGACCTGGC 58.459 52.381 1.29 0.00 39.12 4.85
2923 13266 6.127026 GGAAATAGGCCTATATGTAGACCTGG 60.127 46.154 25.68 0.00 40.57 4.45
2924 13267 6.440647 TGGAAATAGGCCTATATGTAGACCTG 59.559 42.308 25.68 0.00 40.57 4.00
2925 13268 6.571624 TGGAAATAGGCCTATATGTAGACCT 58.428 40.000 25.68 9.28 42.66 3.85
2926 13269 6.869206 TGGAAATAGGCCTATATGTAGACC 57.131 41.667 25.68 18.47 31.07 3.85
2927 13270 8.079211 TGATGGAAATAGGCCTATATGTAGAC 57.921 38.462 25.68 14.21 0.00 2.59
2928 13271 7.345653 CCTGATGGAAATAGGCCTATATGTAGA 59.654 40.741 25.68 8.42 34.57 2.59
2929 13272 7.504403 CCTGATGGAAATAGGCCTATATGTAG 58.496 42.308 25.68 15.72 34.57 2.74
2930 13273 7.437713 CCTGATGGAAATAGGCCTATATGTA 57.562 40.000 25.68 13.00 34.57 2.29
2931 13274 6.319048 CCTGATGGAAATAGGCCTATATGT 57.681 41.667 25.68 13.84 34.57 2.29
2940 13283 3.474600 CAGTGAGCCTGATGGAAATAGG 58.525 50.000 0.00 0.00 44.49 2.57
2941 13284 2.877168 GCAGTGAGCCTGATGGAAATAG 59.123 50.000 0.00 0.00 44.49 1.73
2942 13285 2.923121 GCAGTGAGCCTGATGGAAATA 58.077 47.619 0.00 0.00 44.49 1.40
2943 13286 1.760192 GCAGTGAGCCTGATGGAAAT 58.240 50.000 0.00 0.00 44.49 2.17
2944 13287 3.254629 GCAGTGAGCCTGATGGAAA 57.745 52.632 0.00 0.00 44.49 3.13
2945 13288 2.889756 TCTAGCAGTGAGCCTGATGGAA 60.890 50.000 0.00 0.00 43.08 3.53
2946 13289 1.342374 TCTAGCAGTGAGCCTGATGGA 60.342 52.381 0.00 0.00 43.70 3.41
2949 13292 4.124150 GGCTTCTAGCAGTGAGCCTGAT 62.124 54.545 11.59 0.00 44.75 2.90
2950 13293 2.842810 GGCTTCTAGCAGTGAGCCTGA 61.843 57.143 11.59 0.00 44.75 3.86
2951 13294 0.461693 GGCTTCTAGCAGTGAGCCTG 60.462 60.000 11.59 0.00 44.75 4.85
2952 13295 0.617249 AGGCTTCTAGCAGTGAGCCT 60.617 55.000 14.91 14.91 44.75 4.58
2953 13296 0.179086 GAGGCTTCTAGCAGTGAGCC 60.179 60.000 11.02 11.02 44.75 4.70
2954 13297 0.534412 TGAGGCTTCTAGCAGTGAGC 59.466 55.000 0.00 0.00 44.75 4.26
2955 13298 1.134848 GGTGAGGCTTCTAGCAGTGAG 60.135 57.143 0.00 0.00 44.75 3.51
2956 13299 0.898320 GGTGAGGCTTCTAGCAGTGA 59.102 55.000 0.00 0.00 44.75 3.41
2957 13300 0.610174 TGGTGAGGCTTCTAGCAGTG 59.390 55.000 0.00 0.00 44.75 3.66
2958 13301 0.901124 CTGGTGAGGCTTCTAGCAGT 59.099 55.000 14.74 0.00 44.75 4.40
2959 13302 0.461693 GCTGGTGAGGCTTCTAGCAG 60.462 60.000 18.40 17.66 44.75 4.24
2960 13303 1.194121 TGCTGGTGAGGCTTCTAGCA 61.194 55.000 20.74 20.74 44.75 3.49
2961 13304 0.179936 ATGCTGGTGAGGCTTCTAGC 59.820 55.000 17.17 17.17 41.46 3.42
2962 13305 1.483827 TCATGCTGGTGAGGCTTCTAG 59.516 52.381 0.00 0.00 0.00 2.43
2963 13306 1.571955 TCATGCTGGTGAGGCTTCTA 58.428 50.000 0.00 0.00 0.00 2.10
2964 13307 0.694771 TTCATGCTGGTGAGGCTTCT 59.305 50.000 0.00 0.00 0.00 2.85
2965 13308 1.093159 CTTCATGCTGGTGAGGCTTC 58.907 55.000 0.00 0.00 0.00 3.86
2966 13309 0.964358 GCTTCATGCTGGTGAGGCTT 60.964 55.000 11.92 0.00 44.85 4.35
2967 13310 1.378250 GCTTCATGCTGGTGAGGCT 60.378 57.895 11.92 0.00 44.85 4.58
2968 13311 3.194719 GCTTCATGCTGGTGAGGC 58.805 61.111 5.89 5.89 42.68 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.