Multiple sequence alignment - TraesCS3A01G002300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G002300 chr3A 100.000 3252 0 0 1 3252 1395145 1391894 0.000000e+00 6006
1 TraesCS3A01G002300 chr2D 86.072 718 78 16 26 734 511972249 511972953 0.000000e+00 752
2 TraesCS3A01G002300 chr2D 82.751 429 53 12 20 431 628017672 628018096 2.380000e-96 363
3 TraesCS3A01G002300 chr2D 85.205 365 36 9 451 802 631712961 631713320 3.080000e-95 359
4 TraesCS3A01G002300 chr3B 86.307 723 49 25 2049 2753 1603027 1602337 0.000000e+00 741
5 TraesCS3A01G002300 chr3B 86.191 659 44 21 2049 2675 1617222 1616579 0.000000e+00 669
6 TraesCS3A01G002300 chr3B 91.874 443 24 7 1009 1447 1618241 1617807 2.770000e-170 608
7 TraesCS3A01G002300 chr3B 85.490 510 47 19 2766 3252 1616517 1616012 1.040000e-139 507
8 TraesCS3A01G002300 chr3B 92.481 266 13 6 1826 2088 1603344 1603083 1.100000e-99 374
9 TraesCS3A01G002300 chr3B 93.522 247 11 4 1844 2088 1617475 1617232 2.380000e-96 363
10 TraesCS3A01G002300 chr3B 83.292 407 50 9 26 431 423427196 423427585 3.080000e-95 359
11 TraesCS3A01G002300 chr3B 80.986 426 53 14 26 431 61978757 61978340 2.440000e-81 313
12 TraesCS3A01G002300 chr3B 80.481 374 45 26 2892 3252 1602219 1601861 8.950000e-66 261
13 TraesCS3A01G002300 chrUn 84.848 660 45 28 2131 2753 43286499 43285858 5.960000e-172 614
14 TraesCS3A01G002300 chrUn 91.906 383 22 6 996 1375 43288517 43288141 7.990000e-146 527
15 TraesCS3A01G002300 chrUn 91.016 256 16 5 1826 2075 43286752 43286498 4.020000e-89 339
16 TraesCS3A01G002300 chrUn 81.067 375 48 17 2892 3252 43285742 43285377 8.890000e-71 278
17 TraesCS3A01G002300 chrUn 81.273 267 42 7 1108 1372 286785140 286785400 3.290000e-50 209
18 TraesCS3A01G002300 chr4D 87.166 374 32 9 434 796 438906854 438907222 8.400000e-111 411
19 TraesCS3A01G002300 chr4D 85.096 416 41 12 26 427 341234452 341234044 3.910000e-109 405
20 TraesCS3A01G002300 chr4D 87.123 365 31 2 449 802 289844864 289844505 1.820000e-107 399
21 TraesCS3A01G002300 chr4D 83.684 380 39 10 440 802 214443776 214444149 1.450000e-88 337
22 TraesCS3A01G002300 chr3D 85.222 406 48 7 28 431 55788552 55788947 1.090000e-109 407
23 TraesCS3A01G002300 chr3D 85.302 381 39 8 434 802 191687363 191686988 8.520000e-101 377
24 TraesCS3A01G002300 chr3D 85.146 377 38 9 438 802 256580707 256580337 1.430000e-98 370
25 TraesCS3A01G002300 chr4A 84.975 406 50 9 25 426 78815495 78815893 5.050000e-108 401
26 TraesCS3A01G002300 chr7D 86.631 374 34 8 434 796 277006918 277007286 1.820000e-107 399
27 TraesCS3A01G002300 chr7D 87.896 347 31 7 439 774 363966256 363965910 6.540000e-107 398
28 TraesCS3A01G002300 chr7D 84.856 383 39 11 434 802 362517344 362517721 5.130000e-98 368
29 TraesCS3A01G002300 chr7D 85.065 308 40 5 1069 1375 520413503 520413201 3.150000e-80 309
30 TraesCS3A01G002300 chr7B 84.314 408 52 5 26 422 243498243 243498649 3.930000e-104 388
31 TraesCS3A01G002300 chr7B 82.578 419 56 11 26 431 229157685 229157271 1.440000e-93 353
32 TraesCS3A01G002300 chr7B 83.733 375 50 5 434 802 147497437 147497068 8.640000e-91 344
33 TraesCS3A01G002300 chr7B 85.246 305 40 4 1069 1372 553637766 553637466 3.150000e-80 309
34 TraesCS3A01G002300 chr7B 84.345 313 37 8 125 427 305204445 305204755 2.450000e-76 296
35 TraesCS3A01G002300 chr1D 86.575 365 33 2 449 802 197118954 197118595 3.930000e-104 388
36 TraesCS3A01G002300 chr1D 83.791 401 52 9 26 422 480997221 480996830 5.130000e-98 368
37 TraesCS3A01G002300 chr7A 86.932 352 35 6 434 774 581956420 581956069 5.090000e-103 385
38 TraesCS3A01G002300 chr7A 83.810 420 45 11 28 427 70667965 70667549 8.520000e-101 377
39 TraesCS3A01G002300 chr7A 83.871 372 52 4 434 802 341396663 341397029 6.680000e-92 348
40 TraesCS3A01G002300 chr7A 84.153 366 39 9 449 802 395904715 395904357 1.450000e-88 337
41 TraesCS3A01G002300 chr7A 84.918 305 41 4 1069 1372 596730638 596730338 1.470000e-78 303
42 TraesCS3A01G002300 chr1A 85.246 366 42 6 438 802 592375149 592374795 1.840000e-97 366
43 TraesCS3A01G002300 chr2A 82.381 420 52 13 26 431 657308264 657308675 2.400000e-91 346
44 TraesCS3A01G002300 chr2A 80.139 287 47 7 1111 1393 82805694 82805414 4.250000e-49 206
45 TraesCS3A01G002300 chr5B 81.655 278 43 6 1111 1384 553580050 553579777 1.170000e-54 224
46 TraesCS3A01G002300 chr6B 81.295 278 44 6 1111 1384 103259399 103259672 5.460000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G002300 chr3A 1391894 1395145 3251 True 6006.000000 6006 100.00000 1 3252 1 chr3A.!!$R1 3251
1 TraesCS3A01G002300 chr2D 511972249 511972953 704 False 752.000000 752 86.07200 26 734 1 chr2D.!!$F1 708
2 TraesCS3A01G002300 chr3B 1616012 1618241 2229 True 536.750000 669 89.26925 1009 3252 4 chr3B.!!$R3 2243
3 TraesCS3A01G002300 chr3B 1601861 1603344 1483 True 458.666667 741 86.42300 1826 3252 3 chr3B.!!$R2 1426
4 TraesCS3A01G002300 chrUn 43285377 43288517 3140 True 439.500000 614 87.20925 996 3252 4 chrUn.!!$R1 2256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 779 0.112995 TTGCAATGGGAGAGGTGCTT 59.887 50.0 0.0 0.0 37.87 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2768 3914 0.185901 AACAGGAACACACATGGGCT 59.814 50.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.403936 CCGAGGGGGAATCAATCAC 57.596 57.895 0.00 0.00 38.47 3.06
19 20 0.532862 CCGAGGGGGAATCAATCACG 60.533 60.000 0.00 0.00 38.47 4.35
20 21 0.532862 CGAGGGGGAATCAATCACGG 60.533 60.000 0.00 0.00 29.39 4.94
21 22 0.837272 GAGGGGGAATCAATCACGGA 59.163 55.000 0.00 0.00 29.39 4.69
22 23 0.839946 AGGGGGAATCAATCACGGAG 59.160 55.000 0.00 0.00 29.39 4.63
23 24 0.179018 GGGGGAATCAATCACGGAGG 60.179 60.000 0.00 0.00 29.39 4.30
24 25 0.179018 GGGGAATCAATCACGGAGGG 60.179 60.000 0.00 0.00 29.39 4.30
36 37 0.255318 ACGGAGGGTGATACGTCTCT 59.745 55.000 0.00 0.00 33.92 3.10
150 151 8.453498 TTTTGGGACTAACCTATTAACCTAGT 57.547 34.615 0.00 0.00 38.98 2.57
152 153 6.505754 TGGGACTAACCTATTAACCTAGTGT 58.494 40.000 0.00 0.00 38.98 3.55
160 161 4.406003 CCTATTAACCTAGTGTCCAGTGCT 59.594 45.833 0.00 0.00 0.00 4.40
165 166 2.826725 ACCTAGTGTCCAGTGCTAGTTC 59.173 50.000 0.00 0.00 32.55 3.01
166 167 2.826128 CCTAGTGTCCAGTGCTAGTTCA 59.174 50.000 0.00 0.00 32.55 3.18
228 229 4.971220 GTCAAACGGAATAAAACTTTCGCA 59.029 37.500 0.00 0.00 0.00 5.10
250 251 5.990996 GCAATGATTTTTCTTGGACCAGAAA 59.009 36.000 12.40 12.40 40.36 2.52
251 252 6.146673 GCAATGATTTTTCTTGGACCAGAAAG 59.853 38.462 14.65 3.07 42.43 2.62
254 255 4.385358 TTTTTCTTGGACCAGAAAGCAC 57.615 40.909 14.65 0.00 42.43 4.40
256 257 1.140312 TCTTGGACCAGAAAGCACCT 58.860 50.000 0.00 0.00 0.00 4.00
257 258 1.202806 TCTTGGACCAGAAAGCACCTG 60.203 52.381 0.00 0.00 0.00 4.00
261 262 2.036256 CCAGAAAGCACCTGGGGG 59.964 66.667 0.00 0.00 45.66 5.40
262 263 2.538141 CCAGAAAGCACCTGGGGGA 61.538 63.158 0.00 0.00 45.66 4.81
271 272 0.916358 CACCTGGGGGACTTGGAGAT 60.916 60.000 0.00 0.00 36.25 2.75
273 274 0.621571 CCTGGGGGACTTGGAGATGA 60.622 60.000 0.00 0.00 33.58 2.92
274 275 1.289160 CTGGGGGACTTGGAGATGAA 58.711 55.000 0.00 0.00 0.00 2.57
276 277 1.290134 GGGGGACTTGGAGATGAAGT 58.710 55.000 0.00 0.00 36.33 3.01
288 289 2.693074 GAGATGAAGTCAGAGGAGTCCC 59.307 54.545 5.25 0.00 0.00 4.46
293 294 2.043852 TCAGAGGAGTCCCGAGGC 60.044 66.667 5.25 0.00 37.58 4.70
294 295 3.522731 CAGAGGAGTCCCGAGGCG 61.523 72.222 5.25 0.00 37.58 5.52
295 296 3.729489 AGAGGAGTCCCGAGGCGA 61.729 66.667 5.25 0.00 37.58 5.54
339 346 4.284550 GGGCTGGCTTGTGGGTCA 62.285 66.667 0.00 0.00 0.00 4.02
342 349 1.604593 GCTGGCTTGTGGGTCACAT 60.605 57.895 1.37 0.00 44.16 3.21
343 350 1.870055 GCTGGCTTGTGGGTCACATG 61.870 60.000 1.37 5.69 44.16 3.21
345 352 1.978617 GGCTTGTGGGTCACATGGG 60.979 63.158 13.31 0.00 44.16 4.00
353 360 0.618968 GGGTCACATGGGAGTCCTCT 60.619 60.000 9.58 0.00 0.00 3.69
381 388 7.945109 ACCCTAATTCTTGGCCTATAAATTCTC 59.055 37.037 3.32 0.00 0.00 2.87
390 397 9.831737 CTTGGCCTATAAATTCTCAAATATTCG 57.168 33.333 3.32 0.00 0.00 3.34
401 408 5.698832 TCTCAAATATTCGCAAACCAACAG 58.301 37.500 0.00 0.00 0.00 3.16
417 424 1.021968 ACAGAAGCGTCCACCAAAAC 58.978 50.000 0.00 0.00 0.00 2.43
422 429 1.021968 AGCGTCCACCAAAACACTTC 58.978 50.000 0.00 0.00 0.00 3.01
427 434 1.487142 TCCACCAAAACACTTCTCCGA 59.513 47.619 0.00 0.00 0.00 4.55
429 436 1.602377 CACCAAAACACTTCTCCGACC 59.398 52.381 0.00 0.00 0.00 4.79
430 437 0.865769 CCAAAACACTTCTCCGACCG 59.134 55.000 0.00 0.00 0.00 4.79
431 438 0.865769 CAAAACACTTCTCCGACCGG 59.134 55.000 0.00 0.00 0.00 5.28
434 441 4.796231 CACTTCTCCGACCGGGCG 62.796 72.222 26.76 26.76 34.94 6.13
436 443 4.493747 CTTCTCCGACCGGGCGAC 62.494 72.222 36.23 5.62 34.94 5.19
458 465 4.223032 ACCACGAAGGACTTCTACATCAAT 59.777 41.667 10.07 0.00 41.22 2.57
471 478 9.646522 ACTTCTACATCAATATTATTGCCCTTT 57.353 29.630 10.92 0.00 0.00 3.11
476 483 7.820648 ACATCAATATTATTGCCCTTTCGATC 58.179 34.615 10.92 0.00 0.00 3.69
484 491 1.982073 GCCCTTTCGATCAAGCGTGG 61.982 60.000 0.00 0.00 0.00 4.94
542 549 2.425668 GCTAGACGGCTTCTTCTCTCTT 59.574 50.000 0.00 0.00 35.55 2.85
546 553 5.470047 AGACGGCTTCTTCTCTCTTTTTA 57.530 39.130 0.00 0.00 0.00 1.52
576 583 7.687445 TCAATACAATGTTCTCATCGATGTTG 58.313 34.615 24.09 20.41 32.56 3.33
580 587 5.469760 ACAATGTTCTCATCGATGTTGTTGA 59.530 36.000 24.09 12.80 32.56 3.18
585 592 5.596268 TCTCATCGATGTTGTTGAAGTTG 57.404 39.130 24.09 0.00 0.00 3.16
609 616 8.669946 TGTATCCGATGTAATATTCTTTTGCA 57.330 30.769 0.00 0.00 0.00 4.08
628 635 1.721389 CAGTGTGTTTGTCGAGATCCG 59.279 52.381 0.00 0.00 40.25 4.18
691 698 6.721704 ATTTGAGCCTTTTCTGAACTCTTT 57.278 33.333 7.12 0.00 0.00 2.52
734 741 9.109393 TCTTTATATTTCTCCTCAAATTGTCGG 57.891 33.333 0.00 0.00 0.00 4.79
735 742 5.757850 ATATTTCTCCTCAAATTGTCGGC 57.242 39.130 0.00 0.00 0.00 5.54
736 743 2.559698 TTCTCCTCAAATTGTCGGCA 57.440 45.000 0.00 0.00 0.00 5.69
737 744 2.559698 TCTCCTCAAATTGTCGGCAA 57.440 45.000 4.23 4.23 39.16 4.52
738 745 2.151202 TCTCCTCAAATTGTCGGCAAC 58.849 47.619 3.66 0.00 37.44 4.17
739 746 2.154462 CTCCTCAAATTGTCGGCAACT 58.846 47.619 3.66 0.00 37.44 3.16
740 747 3.007506 TCTCCTCAAATTGTCGGCAACTA 59.992 43.478 3.66 0.00 37.44 2.24
741 748 3.334691 TCCTCAAATTGTCGGCAACTAG 58.665 45.455 3.66 0.00 37.44 2.57
742 749 3.007506 TCCTCAAATTGTCGGCAACTAGA 59.992 43.478 3.66 1.87 37.44 2.43
743 750 3.941483 CCTCAAATTGTCGGCAACTAGAT 59.059 43.478 3.66 0.00 37.44 1.98
744 751 4.396166 CCTCAAATTGTCGGCAACTAGATT 59.604 41.667 3.66 0.00 37.44 2.40
745 752 5.295431 TCAAATTGTCGGCAACTAGATTG 57.705 39.130 3.66 6.19 41.69 2.67
746 753 4.155826 TCAAATTGTCGGCAACTAGATTGG 59.844 41.667 3.66 0.00 38.88 3.16
747 754 2.851263 TTGTCGGCAACTAGATTGGT 57.149 45.000 0.00 0.00 38.88 3.67
748 755 2.851263 TGTCGGCAACTAGATTGGTT 57.149 45.000 0.00 0.00 38.88 3.67
749 756 3.134574 TGTCGGCAACTAGATTGGTTT 57.865 42.857 0.00 0.00 38.88 3.27
750 757 3.482436 TGTCGGCAACTAGATTGGTTTT 58.518 40.909 0.00 0.00 38.88 2.43
751 758 3.886505 TGTCGGCAACTAGATTGGTTTTT 59.113 39.130 0.00 0.00 38.88 1.94
752 759 4.226761 GTCGGCAACTAGATTGGTTTTTG 58.773 43.478 0.00 0.00 38.88 2.44
753 760 3.886505 TCGGCAACTAGATTGGTTTTTGT 59.113 39.130 0.00 0.00 38.88 2.83
754 761 4.339814 TCGGCAACTAGATTGGTTTTTGTT 59.660 37.500 0.00 0.00 38.88 2.83
755 762 4.444056 CGGCAACTAGATTGGTTTTTGTTG 59.556 41.667 0.00 0.00 38.88 3.33
758 765 6.900568 CAACTAGATTGGTTTTTGTTGCAA 57.099 33.333 0.00 0.00 34.34 4.08
759 766 7.481275 CAACTAGATTGGTTTTTGTTGCAAT 57.519 32.000 0.59 0.00 34.34 3.56
760 767 7.346695 CAACTAGATTGGTTTTTGTTGCAATG 58.653 34.615 0.59 0.00 34.34 2.82
761 768 5.990996 ACTAGATTGGTTTTTGTTGCAATGG 59.009 36.000 0.59 0.00 0.00 3.16
762 769 4.136051 AGATTGGTTTTTGTTGCAATGGG 58.864 39.130 0.59 0.00 0.00 4.00
763 770 3.634397 TTGGTTTTTGTTGCAATGGGA 57.366 38.095 0.59 0.00 0.00 4.37
764 771 3.191078 TGGTTTTTGTTGCAATGGGAG 57.809 42.857 0.59 0.00 0.00 4.30
765 772 2.768527 TGGTTTTTGTTGCAATGGGAGA 59.231 40.909 0.59 0.00 0.00 3.71
766 773 3.181467 TGGTTTTTGTTGCAATGGGAGAG 60.181 43.478 0.59 0.00 0.00 3.20
767 774 3.392882 GTTTTTGTTGCAATGGGAGAGG 58.607 45.455 0.59 0.00 0.00 3.69
768 775 2.380064 TTTGTTGCAATGGGAGAGGT 57.620 45.000 0.59 0.00 0.00 3.85
769 776 1.619654 TTGTTGCAATGGGAGAGGTG 58.380 50.000 0.59 0.00 0.00 4.00
770 777 0.895100 TGTTGCAATGGGAGAGGTGC 60.895 55.000 0.59 0.00 37.51 5.01
771 778 0.610232 GTTGCAATGGGAGAGGTGCT 60.610 55.000 0.59 0.00 37.87 4.40
772 779 0.112995 TTGCAATGGGAGAGGTGCTT 59.887 50.000 0.00 0.00 37.87 3.91
773 780 0.991146 TGCAATGGGAGAGGTGCTTA 59.009 50.000 0.00 0.00 37.87 3.09
774 781 1.565759 TGCAATGGGAGAGGTGCTTAT 59.434 47.619 0.00 0.00 37.87 1.73
775 782 2.777114 TGCAATGGGAGAGGTGCTTATA 59.223 45.455 0.00 0.00 37.87 0.98
776 783 3.395607 TGCAATGGGAGAGGTGCTTATAT 59.604 43.478 0.00 0.00 37.87 0.86
777 784 4.141181 TGCAATGGGAGAGGTGCTTATATT 60.141 41.667 0.00 0.00 37.87 1.28
778 785 5.073008 TGCAATGGGAGAGGTGCTTATATTA 59.927 40.000 0.00 0.00 37.87 0.98
779 786 5.645497 GCAATGGGAGAGGTGCTTATATTAG 59.355 44.000 0.00 0.00 34.13 1.73
780 787 6.745474 GCAATGGGAGAGGTGCTTATATTAGT 60.745 42.308 0.00 0.00 34.13 2.24
781 788 7.227156 CAATGGGAGAGGTGCTTATATTAGTT 58.773 38.462 0.00 0.00 0.00 2.24
782 789 6.824958 TGGGAGAGGTGCTTATATTAGTTT 57.175 37.500 0.00 0.00 0.00 2.66
783 790 7.208064 TGGGAGAGGTGCTTATATTAGTTTT 57.792 36.000 0.00 0.00 0.00 2.43
784 791 7.054124 TGGGAGAGGTGCTTATATTAGTTTTG 58.946 38.462 0.00 0.00 0.00 2.44
785 792 6.486993 GGGAGAGGTGCTTATATTAGTTTTGG 59.513 42.308 0.00 0.00 0.00 3.28
786 793 6.486993 GGAGAGGTGCTTATATTAGTTTTGGG 59.513 42.308 0.00 0.00 0.00 4.12
787 794 6.970191 AGAGGTGCTTATATTAGTTTTGGGT 58.030 36.000 0.00 0.00 0.00 4.51
788 795 7.410991 AGAGGTGCTTATATTAGTTTTGGGTT 58.589 34.615 0.00 0.00 0.00 4.11
789 796 7.556635 AGAGGTGCTTATATTAGTTTTGGGTTC 59.443 37.037 0.00 0.00 0.00 3.62
790 797 7.179269 AGGTGCTTATATTAGTTTTGGGTTCA 58.821 34.615 0.00 0.00 0.00 3.18
791 798 7.672239 AGGTGCTTATATTAGTTTTGGGTTCAA 59.328 33.333 0.00 0.00 0.00 2.69
792 799 8.474831 GGTGCTTATATTAGTTTTGGGTTCAAT 58.525 33.333 0.00 0.00 32.28 2.57
793 800 9.516314 GTGCTTATATTAGTTTTGGGTTCAATC 57.484 33.333 0.00 0.00 32.28 2.67
794 801 9.474313 TGCTTATATTAGTTTTGGGTTCAATCT 57.526 29.630 0.00 0.00 32.28 2.40
799 806 6.563222 TTAGTTTTGGGTTCAATCTTACGG 57.437 37.500 0.00 0.00 32.28 4.02
800 807 4.466827 AGTTTTGGGTTCAATCTTACGGT 58.533 39.130 0.00 0.00 32.28 4.83
801 808 4.277423 AGTTTTGGGTTCAATCTTACGGTG 59.723 41.667 0.00 0.00 32.28 4.94
802 809 1.816074 TGGGTTCAATCTTACGGTGC 58.184 50.000 0.00 0.00 0.00 5.01
803 810 1.349688 TGGGTTCAATCTTACGGTGCT 59.650 47.619 0.00 0.00 0.00 4.40
804 811 2.224670 TGGGTTCAATCTTACGGTGCTT 60.225 45.455 0.00 0.00 0.00 3.91
805 812 2.161609 GGGTTCAATCTTACGGTGCTTG 59.838 50.000 0.00 0.00 0.00 4.01
806 813 2.414161 GGTTCAATCTTACGGTGCTTGC 60.414 50.000 0.00 0.00 0.00 4.01
807 814 2.472695 TCAATCTTACGGTGCTTGCT 57.527 45.000 0.00 0.00 0.00 3.91
808 815 2.076100 TCAATCTTACGGTGCTTGCTG 58.924 47.619 0.00 0.00 0.00 4.41
809 816 1.806542 CAATCTTACGGTGCTTGCTGT 59.193 47.619 0.00 0.00 0.00 4.40
810 817 3.000041 CAATCTTACGGTGCTTGCTGTA 59.000 45.455 0.00 0.00 0.00 2.74
811 818 3.543680 ATCTTACGGTGCTTGCTGTAT 57.456 42.857 0.00 0.00 31.15 2.29
812 819 4.665833 ATCTTACGGTGCTTGCTGTATA 57.334 40.909 0.00 0.00 31.15 1.47
813 820 4.665833 TCTTACGGTGCTTGCTGTATAT 57.334 40.909 0.00 0.00 31.15 0.86
814 821 4.617959 TCTTACGGTGCTTGCTGTATATC 58.382 43.478 0.00 0.00 31.15 1.63
815 822 2.240493 ACGGTGCTTGCTGTATATCC 57.760 50.000 0.00 0.00 0.00 2.59
816 823 1.202651 ACGGTGCTTGCTGTATATCCC 60.203 52.381 0.00 0.00 0.00 3.85
817 824 1.512926 GGTGCTTGCTGTATATCCCG 58.487 55.000 0.00 0.00 0.00 5.14
818 825 1.512926 GTGCTTGCTGTATATCCCGG 58.487 55.000 0.00 0.00 0.00 5.73
819 826 1.128200 TGCTTGCTGTATATCCCGGT 58.872 50.000 0.00 0.00 0.00 5.28
820 827 1.202639 TGCTTGCTGTATATCCCGGTG 60.203 52.381 0.00 0.00 0.00 4.94
821 828 1.070134 GCTTGCTGTATATCCCGGTGA 59.930 52.381 0.00 0.00 0.00 4.02
822 829 2.755650 CTTGCTGTATATCCCGGTGAC 58.244 52.381 0.00 0.00 0.00 3.67
823 830 1.783071 TGCTGTATATCCCGGTGACA 58.217 50.000 0.00 0.00 0.00 3.58
824 831 1.686587 TGCTGTATATCCCGGTGACAG 59.313 52.381 0.00 7.35 40.39 3.51
825 832 1.000955 GCTGTATATCCCGGTGACAGG 59.999 57.143 15.79 0.00 38.35 4.00
826 833 2.594131 CTGTATATCCCGGTGACAGGA 58.406 52.381 2.50 0.00 35.05 3.86
827 834 2.963101 CTGTATATCCCGGTGACAGGAA 59.037 50.000 2.50 0.00 35.30 3.36
828 835 2.963101 TGTATATCCCGGTGACAGGAAG 59.037 50.000 2.50 0.00 35.30 3.46
829 836 1.424638 ATATCCCGGTGACAGGAAGG 58.575 55.000 2.50 0.00 35.30 3.46
830 837 0.337082 TATCCCGGTGACAGGAAGGA 59.663 55.000 2.50 0.00 35.30 3.36
831 838 0.546747 ATCCCGGTGACAGGAAGGAA 60.547 55.000 2.50 0.00 35.30 3.36
832 839 1.192146 TCCCGGTGACAGGAAGGAAG 61.192 60.000 2.50 0.00 0.00 3.46
833 840 1.296715 CCGGTGACAGGAAGGAAGG 59.703 63.158 0.00 0.00 0.00 3.46
834 841 1.296715 CGGTGACAGGAAGGAAGGG 59.703 63.158 0.00 0.00 0.00 3.95
835 842 1.192146 CGGTGACAGGAAGGAAGGGA 61.192 60.000 0.00 0.00 0.00 4.20
836 843 0.325272 GGTGACAGGAAGGAAGGGAC 59.675 60.000 0.00 0.00 0.00 4.46
837 844 1.056660 GTGACAGGAAGGAAGGGACA 58.943 55.000 0.00 0.00 0.00 4.02
838 845 1.420138 GTGACAGGAAGGAAGGGACAA 59.580 52.381 0.00 0.00 0.00 3.18
839 846 2.131854 TGACAGGAAGGAAGGGACAAA 58.868 47.619 0.00 0.00 0.00 2.83
840 847 2.106511 TGACAGGAAGGAAGGGACAAAG 59.893 50.000 0.00 0.00 0.00 2.77
841 848 2.372172 GACAGGAAGGAAGGGACAAAGA 59.628 50.000 0.00 0.00 0.00 2.52
842 849 2.373502 ACAGGAAGGAAGGGACAAAGAG 59.626 50.000 0.00 0.00 0.00 2.85
843 850 1.988846 AGGAAGGAAGGGACAAAGAGG 59.011 52.381 0.00 0.00 0.00 3.69
844 851 1.705745 GGAAGGAAGGGACAAAGAGGT 59.294 52.381 0.00 0.00 0.00 3.85
845 852 2.553247 GGAAGGAAGGGACAAAGAGGTG 60.553 54.545 0.00 0.00 0.00 4.00
846 853 0.402121 AGGAAGGGACAAAGAGGTGC 59.598 55.000 0.00 0.00 0.00 5.01
847 854 0.402121 GGAAGGGACAAAGAGGTGCT 59.598 55.000 0.00 0.00 0.00 4.40
848 855 1.202940 GGAAGGGACAAAGAGGTGCTT 60.203 52.381 0.00 0.00 38.88 3.91
860 867 6.715347 AAAGAGGTGCTTTGTGATAGTTTT 57.285 33.333 0.00 0.00 44.89 2.43
861 868 5.948992 AGAGGTGCTTTGTGATAGTTTTC 57.051 39.130 0.00 0.00 0.00 2.29
862 869 5.625150 AGAGGTGCTTTGTGATAGTTTTCT 58.375 37.500 0.00 0.00 0.00 2.52
863 870 6.769512 AGAGGTGCTTTGTGATAGTTTTCTA 58.230 36.000 0.00 0.00 36.78 2.10
864 871 7.398024 AGAGGTGCTTTGTGATAGTTTTCTAT 58.602 34.615 0.00 0.00 44.79 1.98
865 872 7.335422 AGAGGTGCTTTGTGATAGTTTTCTATG 59.665 37.037 0.00 0.00 42.49 2.23
866 873 7.168219 AGGTGCTTTGTGATAGTTTTCTATGA 58.832 34.615 0.00 0.00 42.49 2.15
867 874 7.665559 AGGTGCTTTGTGATAGTTTTCTATGAA 59.334 33.333 0.00 0.00 42.49 2.57
868 875 8.462016 GGTGCTTTGTGATAGTTTTCTATGAAT 58.538 33.333 0.00 0.00 42.49 2.57
869 876 9.282247 GTGCTTTGTGATAGTTTTCTATGAATG 57.718 33.333 0.00 0.00 42.49 2.67
870 877 9.230122 TGCTTTGTGATAGTTTTCTATGAATGA 57.770 29.630 0.00 0.00 42.49 2.57
903 910 9.199982 CCAAGTTTTGGCATAATAATCATCATC 57.800 33.333 0.00 0.00 45.17 2.92
904 911 9.752961 CAAGTTTTGGCATAATAATCATCATCA 57.247 29.630 0.00 0.00 0.00 3.07
919 926 6.889301 TCATCATCATAATCAAAAGAGCCC 57.111 37.500 0.00 0.00 0.00 5.19
920 927 6.367161 TCATCATCATAATCAAAAGAGCCCA 58.633 36.000 0.00 0.00 0.00 5.36
921 928 6.834969 TCATCATCATAATCAAAAGAGCCCAA 59.165 34.615 0.00 0.00 0.00 4.12
922 929 6.455360 TCATCATAATCAAAAGAGCCCAAC 57.545 37.500 0.00 0.00 0.00 3.77
923 930 5.360714 TCATCATAATCAAAAGAGCCCAACC 59.639 40.000 0.00 0.00 0.00 3.77
924 931 4.023291 TCATAATCAAAAGAGCCCAACCC 58.977 43.478 0.00 0.00 0.00 4.11
925 932 2.397044 AATCAAAAGAGCCCAACCCA 57.603 45.000 0.00 0.00 0.00 4.51
926 933 1.928868 ATCAAAAGAGCCCAACCCAG 58.071 50.000 0.00 0.00 0.00 4.45
927 934 0.827507 TCAAAAGAGCCCAACCCAGC 60.828 55.000 0.00 0.00 0.00 4.85
928 935 1.903404 AAAAGAGCCCAACCCAGCG 60.903 57.895 0.00 0.00 0.00 5.18
929 936 3.868200 AAAGAGCCCAACCCAGCGG 62.868 63.158 0.00 0.00 0.00 5.52
931 938 4.785453 GAGCCCAACCCAGCGGAG 62.785 72.222 0.00 0.00 0.00 4.63
934 941 4.410400 CCCAACCCAGCGGAGTCC 62.410 72.222 0.00 0.00 0.00 3.85
935 942 3.636231 CCAACCCAGCGGAGTCCA 61.636 66.667 10.49 0.00 0.00 4.02
936 943 2.358737 CAACCCAGCGGAGTCCAC 60.359 66.667 10.49 0.00 0.00 4.02
937 944 2.526873 AACCCAGCGGAGTCCACT 60.527 61.111 10.49 0.87 0.00 4.00
938 945 2.584391 AACCCAGCGGAGTCCACTC 61.584 63.158 10.49 0.00 42.14 3.51
939 946 4.135153 CCCAGCGGAGTCCACTCG 62.135 72.222 10.49 0.00 43.76 4.18
940 947 3.062466 CCAGCGGAGTCCACTCGA 61.062 66.667 10.49 0.00 43.76 4.04
941 948 2.179517 CAGCGGAGTCCACTCGAC 59.820 66.667 10.49 0.00 43.76 4.20
942 949 3.063084 AGCGGAGTCCACTCGACC 61.063 66.667 10.49 0.00 43.08 4.79
943 950 4.131088 GCGGAGTCCACTCGACCC 62.131 72.222 10.49 0.00 43.08 4.46
944 951 2.361357 CGGAGTCCACTCGACCCT 60.361 66.667 10.49 0.00 43.08 4.34
945 952 2.408241 CGGAGTCCACTCGACCCTC 61.408 68.421 10.49 0.00 43.08 4.30
946 953 2.053277 GGAGTCCACTCGACCCTCC 61.053 68.421 3.60 0.00 43.08 4.30
947 954 2.037527 AGTCCACTCGACCCTCCC 59.962 66.667 0.00 0.00 43.08 4.30
948 955 2.037527 GTCCACTCGACCCTCCCT 59.962 66.667 0.00 0.00 35.23 4.20
949 956 2.053277 GTCCACTCGACCCTCCCTC 61.053 68.421 0.00 0.00 35.23 4.30
950 957 2.760385 CCACTCGACCCTCCCTCC 60.760 72.222 0.00 0.00 0.00 4.30
951 958 2.760385 CACTCGACCCTCCCTCCC 60.760 72.222 0.00 0.00 0.00 4.30
952 959 4.444081 ACTCGACCCTCCCTCCCG 62.444 72.222 0.00 0.00 0.00 5.14
953 960 4.124943 CTCGACCCTCCCTCCCGA 62.125 72.222 0.00 0.00 0.00 5.14
954 961 3.426836 TCGACCCTCCCTCCCGAT 61.427 66.667 0.00 0.00 0.00 4.18
955 962 2.913060 CGACCCTCCCTCCCGATC 60.913 72.222 0.00 0.00 0.00 3.69
956 963 2.524640 GACCCTCCCTCCCGATCC 60.525 72.222 0.00 0.00 0.00 3.36
957 964 4.173701 ACCCTCCCTCCCGATCCC 62.174 72.222 0.00 0.00 0.00 3.85
958 965 4.964241 CCCTCCCTCCCGATCCCC 62.964 77.778 0.00 0.00 0.00 4.81
959 966 4.172232 CCTCCCTCCCGATCCCCA 62.172 72.222 0.00 0.00 0.00 4.96
960 967 2.844839 CTCCCTCCCGATCCCCAC 60.845 72.222 0.00 0.00 0.00 4.61
961 968 4.492303 TCCCTCCCGATCCCCACC 62.492 72.222 0.00 0.00 0.00 4.61
978 985 4.705216 CCCCACCCCCACCCCTAA 62.705 72.222 0.00 0.00 0.00 2.69
979 986 3.344176 CCCACCCCCACCCCTAAC 61.344 72.222 0.00 0.00 0.00 2.34
980 987 3.344176 CCACCCCCACCCCTAACC 61.344 72.222 0.00 0.00 0.00 2.85
981 988 3.344176 CACCCCCACCCCTAACCC 61.344 72.222 0.00 0.00 0.00 4.11
982 989 3.890405 ACCCCCACCCCTAACCCA 61.890 66.667 0.00 0.00 0.00 4.51
983 990 3.021263 CCCCCACCCCTAACCCAG 61.021 72.222 0.00 0.00 0.00 4.45
984 991 3.739613 CCCCACCCCTAACCCAGC 61.740 72.222 0.00 0.00 0.00 4.85
985 992 2.938798 CCCACCCCTAACCCAGCA 60.939 66.667 0.00 0.00 0.00 4.41
986 993 2.677228 CCACCCCTAACCCAGCAG 59.323 66.667 0.00 0.00 0.00 4.24
987 994 2.677228 CACCCCTAACCCAGCAGG 59.323 66.667 0.00 0.00 43.78 4.85
988 995 1.923395 CACCCCTAACCCAGCAGGA 60.923 63.158 0.00 0.00 39.89 3.86
989 996 1.616628 ACCCCTAACCCAGCAGGAG 60.617 63.158 0.00 0.00 39.89 3.69
990 997 2.378634 CCCCTAACCCAGCAGGAGG 61.379 68.421 0.00 0.00 39.89 4.30
991 998 2.592308 CCTAACCCAGCAGGAGGC 59.408 66.667 0.00 0.00 45.30 4.70
1260 1267 1.918253 CTTCCTCTCCCCCATGGTG 59.082 63.158 11.73 0.00 34.77 4.17
1335 1345 0.806492 GATCCGACGAGTTCAAGCCC 60.806 60.000 0.00 0.00 0.00 5.19
1375 1385 6.952935 CAGAGTTCAAGTTCTGGTATGTAC 57.047 41.667 0.00 0.00 37.70 2.90
1376 1386 6.692486 CAGAGTTCAAGTTCTGGTATGTACT 58.308 40.000 0.00 0.00 37.70 2.73
1378 1388 6.722129 AGAGTTCAAGTTCTGGTATGTACTCT 59.278 38.462 7.73 7.73 42.20 3.24
1379 1389 7.233757 AGAGTTCAAGTTCTGGTATGTACTCTT 59.766 37.037 7.73 0.00 43.52 2.85
1380 1390 7.379750 AGTTCAAGTTCTGGTATGTACTCTTC 58.620 38.462 0.00 0.00 0.00 2.87
1381 1391 7.233757 AGTTCAAGTTCTGGTATGTACTCTTCT 59.766 37.037 0.00 0.00 0.00 2.85
1382 1392 6.925211 TCAAGTTCTGGTATGTACTCTTCTG 58.075 40.000 0.00 0.00 0.00 3.02
1383 1393 5.331876 AGTTCTGGTATGTACTCTTCTGC 57.668 43.478 0.00 0.00 0.00 4.26
1384 1394 4.106197 GTTCTGGTATGTACTCTTCTGCG 58.894 47.826 0.00 0.00 0.00 5.18
1385 1395 3.617284 TCTGGTATGTACTCTTCTGCGA 58.383 45.455 0.00 0.00 0.00 5.10
1390 1400 1.112113 TGTACTCTTCTGCGATCCCC 58.888 55.000 0.00 0.00 0.00 4.81
1414 1424 3.067470 AGATCCATCTACTCCTCCCTCA 58.933 50.000 0.00 0.00 34.85 3.86
1415 1425 3.667114 AGATCCATCTACTCCTCCCTCAT 59.333 47.826 0.00 0.00 34.85 2.90
1420 1430 3.147553 TCTACTCCTCCCTCATCATCG 57.852 52.381 0.00 0.00 0.00 3.84
1422 1432 1.288439 CTCCTCCCTCATCATCGCG 59.712 63.158 0.00 0.00 0.00 5.87
1457 1474 4.384940 CAGATCCAGATCTACTCGTCTCA 58.615 47.826 9.78 0.00 45.78 3.27
1459 1476 5.122239 CAGATCCAGATCTACTCGTCTCATC 59.878 48.000 9.78 0.00 45.78 2.92
1464 1481 6.212589 TCCAGATCTACTCGTCTCATCTATCT 59.787 42.308 0.00 0.00 0.00 1.98
1469 1486 6.227522 TCTACTCGTCTCATCTATCTTCTGG 58.772 44.000 0.00 0.00 0.00 3.86
1470 1487 4.141287 ACTCGTCTCATCTATCTTCTGGG 58.859 47.826 0.00 0.00 0.00 4.45
1471 1488 4.141367 ACTCGTCTCATCTATCTTCTGGGA 60.141 45.833 0.00 0.00 0.00 4.37
1476 1493 2.180973 TCATCTATCTTCTGGGAGCCCT 59.819 50.000 7.16 0.00 36.94 5.19
1477 1494 2.094100 TCTATCTTCTGGGAGCCCTG 57.906 55.000 7.16 6.61 36.94 4.45
1481 1498 1.378250 CTTCTGGGAGCCCTGCTTG 60.378 63.158 7.16 0.00 39.88 4.01
1482 1499 3.574074 TTCTGGGAGCCCTGCTTGC 62.574 63.158 7.16 0.00 39.88 4.01
1483 1500 4.355720 CTGGGAGCCCTGCTTGCA 62.356 66.667 7.16 0.00 39.88 4.08
1484 1501 3.657038 CTGGGAGCCCTGCTTGCAT 62.657 63.158 7.16 0.00 39.88 3.96
1486 1503 2.832201 GGAGCCCTGCTTGCATCC 60.832 66.667 0.00 0.00 39.88 3.51
1487 1504 2.274760 GAGCCCTGCTTGCATCCT 59.725 61.111 0.00 0.00 39.88 3.24
1490 1507 2.679092 CCCTGCTTGCATCCTCCA 59.321 61.111 0.00 0.00 0.00 3.86
1491 1508 1.453379 CCCTGCTTGCATCCTCCAG 60.453 63.158 0.00 0.00 0.00 3.86
1509 1526 2.158986 CCAGTCCAGATCGCAAATCTCT 60.159 50.000 0.00 0.00 0.00 3.10
1511 1528 2.102252 AGTCCAGATCGCAAATCTCTCC 59.898 50.000 0.00 0.00 0.00 3.71
1512 1529 1.414181 TCCAGATCGCAAATCTCTCCC 59.586 52.381 0.00 0.00 0.00 4.30
1514 1531 2.481854 CAGATCGCAAATCTCTCCCTG 58.518 52.381 0.00 0.00 0.00 4.45
1515 1532 1.202627 AGATCGCAAATCTCTCCCTGC 60.203 52.381 0.00 0.00 0.00 4.85
1516 1533 0.179034 ATCGCAAATCTCTCCCTGCC 60.179 55.000 0.00 0.00 0.00 4.85
1517 1534 1.078214 CGCAAATCTCTCCCTGCCA 60.078 57.895 0.00 0.00 0.00 4.92
1518 1535 0.677731 CGCAAATCTCTCCCTGCCAA 60.678 55.000 0.00 0.00 0.00 4.52
1519 1536 1.772836 GCAAATCTCTCCCTGCCAAT 58.227 50.000 0.00 0.00 0.00 3.16
1595 1788 7.223260 TCTCAAATCTTGCTTGTGAATGAAT 57.777 32.000 0.00 0.00 0.00 2.57
1596 1789 7.088272 TCTCAAATCTTGCTTGTGAATGAATG 58.912 34.615 0.00 0.00 0.00 2.67
1602 1795 6.983984 TCTTGCTTGTGAATGAATGAATGAA 58.016 32.000 0.00 0.00 0.00 2.57
1603 1796 7.608153 TCTTGCTTGTGAATGAATGAATGAAT 58.392 30.769 0.00 0.00 0.00 2.57
1604 1797 7.544217 TCTTGCTTGTGAATGAATGAATGAATG 59.456 33.333 0.00 0.00 0.00 2.67
1605 1798 6.926313 TGCTTGTGAATGAATGAATGAATGA 58.074 32.000 0.00 0.00 0.00 2.57
1606 1799 7.379750 TGCTTGTGAATGAATGAATGAATGAA 58.620 30.769 0.00 0.00 0.00 2.57
1607 1800 7.544217 TGCTTGTGAATGAATGAATGAATGAAG 59.456 33.333 0.00 0.00 0.00 3.02
1608 1801 7.758076 GCTTGTGAATGAATGAATGAATGAAGA 59.242 33.333 0.00 0.00 0.00 2.87
1609 1802 9.634163 CTTGTGAATGAATGAATGAATGAAGAA 57.366 29.630 0.00 0.00 0.00 2.52
1621 1814 9.524106 TGAATGAATGAAGAATACAAATCATGC 57.476 29.630 0.00 0.00 33.06 4.06
1622 1815 9.524106 GAATGAATGAAGAATACAAATCATGCA 57.476 29.630 0.00 0.00 41.00 3.96
1644 1949 7.393216 TGCATTATTTATTTGGGCTTGAGTTT 58.607 30.769 0.00 0.00 0.00 2.66
1645 1950 7.333921 TGCATTATTTATTTGGGCTTGAGTTTG 59.666 33.333 0.00 0.00 0.00 2.93
1649 1954 6.969993 TTTATTTGGGCTTGAGTTTGTAGT 57.030 33.333 0.00 0.00 0.00 2.73
1650 1955 4.853924 ATTTGGGCTTGAGTTTGTAGTG 57.146 40.909 0.00 0.00 0.00 2.74
1658 2539 5.288472 GGCTTGAGTTTGTAGTGTTTGTTTG 59.712 40.000 0.00 0.00 0.00 2.93
1662 2543 6.548171 TGAGTTTGTAGTGTTTGTTTGTAGC 58.452 36.000 0.00 0.00 0.00 3.58
1669 2550 7.465989 TGTAGTGTTTGTTTGTAGCAACTTAC 58.534 34.615 0.00 0.00 0.00 2.34
1671 2552 6.551736 AGTGTTTGTTTGTAGCAACTTACAG 58.448 36.000 0.00 0.00 35.17 2.74
1680 2561 7.801716 TTGTAGCAACTTACAGTGATTCTTT 57.198 32.000 0.00 0.00 35.17 2.52
1686 2567 6.597614 CAACTTACAGTGATTCTTTGAGCTC 58.402 40.000 6.82 6.82 0.00 4.09
1693 2574 6.149142 ACAGTGATTCTTTGAGCTCTTCATTC 59.851 38.462 16.19 5.82 35.27 2.67
1700 2581 2.004733 TGAGCTCTTCATTCACGCATG 58.995 47.619 16.19 0.00 0.00 4.06
1705 2586 2.485426 CTCTTCATTCACGCATGGTTGT 59.515 45.455 0.00 0.00 0.00 3.32
1706 2587 2.884012 TCTTCATTCACGCATGGTTGTT 59.116 40.909 0.00 0.00 0.00 2.83
1707 2588 2.987413 TCATTCACGCATGGTTGTTC 57.013 45.000 0.00 0.00 0.00 3.18
1709 2590 3.669536 TCATTCACGCATGGTTGTTCTA 58.330 40.909 0.00 0.00 0.00 2.10
1716 2602 5.753438 TCACGCATGGTTGTTCTATTCTATC 59.247 40.000 0.00 0.00 0.00 2.08
1744 2630 4.391830 TGGAATTTGAGCACGTCTATTGTC 59.608 41.667 0.00 0.00 0.00 3.18
1750 2636 1.831106 AGCACGTCTATTGTCATCCCA 59.169 47.619 0.00 0.00 0.00 4.37
1751 2637 2.435805 AGCACGTCTATTGTCATCCCAT 59.564 45.455 0.00 0.00 0.00 4.00
1752 2638 3.641436 AGCACGTCTATTGTCATCCCATA 59.359 43.478 0.00 0.00 0.00 2.74
1753 2639 3.990469 GCACGTCTATTGTCATCCCATAG 59.010 47.826 0.00 0.00 0.00 2.23
1772 2658 6.240002 CCCATAGATAGAACCACCATTAGCTT 60.240 42.308 0.00 0.00 0.00 3.74
1773 2659 7.038302 CCCATAGATAGAACCACCATTAGCTTA 60.038 40.741 0.00 0.00 0.00 3.09
1774 2660 8.543774 CCATAGATAGAACCACCATTAGCTTAT 58.456 37.037 0.00 0.00 0.00 1.73
1781 2667 8.958060 AGAACCACCATTAGCTTATATAGAGA 57.042 34.615 0.00 0.00 0.00 3.10
1782 2668 9.030452 AGAACCACCATTAGCTTATATAGAGAG 57.970 37.037 0.00 0.00 0.00 3.20
1783 2669 8.958060 AACCACCATTAGCTTATATAGAGAGA 57.042 34.615 0.00 0.00 0.00 3.10
1784 2670 8.356000 ACCACCATTAGCTTATATAGAGAGAC 57.644 38.462 0.00 0.00 0.00 3.36
1785 2671 8.174085 ACCACCATTAGCTTATATAGAGAGACT 58.826 37.037 0.00 0.00 0.00 3.24
1786 2672 9.030452 CCACCATTAGCTTATATAGAGAGACTT 57.970 37.037 0.00 0.00 0.00 3.01
1821 2725 9.994432 GCAAACATATATATTCTTCAGGTATGC 57.006 33.333 0.00 0.00 0.00 3.14
1873 2865 4.627035 GGTATGCAATCACAAAGGCTTTTC 59.373 41.667 10.36 0.00 0.00 2.29
1902 2894 6.060788 AGCTTTTGTCATGACTTTCTTCTCT 58.939 36.000 25.55 10.10 0.00 3.10
2025 3018 1.315257 ATGTGCCCTTCAACATCGGC 61.315 55.000 0.00 0.00 41.99 5.54
2035 3028 0.314935 CAACATCGGCAAGCAGGTTT 59.685 50.000 0.00 0.00 0.00 3.27
2039 3032 0.250901 ATCGGCAAGCAGGTTTGTCT 60.251 50.000 0.00 0.00 30.60 3.41
2047 3040 3.319135 CAGGTTTGTCTGCTGCTCT 57.681 52.632 0.00 0.00 0.00 4.09
2069 3067 3.627577 TCTCTGTTTTTCTTGTCCACTGC 59.372 43.478 0.00 0.00 0.00 4.40
2107 3194 4.654262 TCCTCTTAGTTGGTATCATGGGTC 59.346 45.833 0.00 0.00 0.00 4.46
2109 3196 5.131142 CCTCTTAGTTGGTATCATGGGTCTT 59.869 44.000 0.00 0.00 0.00 3.01
2110 3197 6.353082 CCTCTTAGTTGGTATCATGGGTCTTT 60.353 42.308 0.00 0.00 0.00 2.52
2111 3198 7.147549 CCTCTTAGTTGGTATCATGGGTCTTTA 60.148 40.741 0.00 0.00 0.00 1.85
2112 3199 7.792032 TCTTAGTTGGTATCATGGGTCTTTAG 58.208 38.462 0.00 0.00 0.00 1.85
2149 3236 5.693769 TCCATCTCGTCCTTTATCCTTTT 57.306 39.130 0.00 0.00 0.00 2.27
2150 3237 6.062258 TCCATCTCGTCCTTTATCCTTTTT 57.938 37.500 0.00 0.00 0.00 1.94
2276 3379 0.319813 GGTGTGCAAGGGAACAATGC 60.320 55.000 0.00 0.00 43.36 3.56
2308 3411 1.883084 CGGGCGCAAGATACAGTCC 60.883 63.158 10.83 0.00 43.02 3.85
2312 3415 1.438651 GCGCAAGATACAGTCCAACA 58.561 50.000 0.30 0.00 43.02 3.33
2326 3429 3.826729 AGTCCAACAACAAGGCTTATTCC 59.173 43.478 0.00 0.00 0.00 3.01
2556 3673 3.428413 AAATAAGTAGGTGGTGCCGTT 57.572 42.857 0.00 0.00 43.70 4.44
2594 3711 4.060900 CTCTGCTGTTGATATATTGCCGT 58.939 43.478 0.00 0.00 0.00 5.68
2603 3720 6.481976 TGTTGATATATTGCCGTTTACTCAGG 59.518 38.462 0.00 0.00 0.00 3.86
2619 3736 2.180017 GGCGCCTGAATGTTGCTG 59.820 61.111 22.15 0.00 0.00 4.41
2620 3737 2.180017 GCGCCTGAATGTTGCTGG 59.820 61.111 0.00 0.00 0.00 4.85
2621 3738 2.334946 GCGCCTGAATGTTGCTGGA 61.335 57.895 0.00 0.00 0.00 3.86
2622 3739 1.865788 GCGCCTGAATGTTGCTGGAA 61.866 55.000 0.00 0.00 0.00 3.53
2623 3740 0.597568 CGCCTGAATGTTGCTGGAAA 59.402 50.000 0.00 0.00 0.00 3.13
2624 3741 1.000385 CGCCTGAATGTTGCTGGAAAA 60.000 47.619 0.00 0.00 0.00 2.29
2625 3742 2.353011 CGCCTGAATGTTGCTGGAAAAT 60.353 45.455 0.00 0.00 0.00 1.82
2627 3744 3.555586 GCCTGAATGTTGCTGGAAAATGT 60.556 43.478 0.00 0.00 0.00 2.71
2628 3745 4.321899 GCCTGAATGTTGCTGGAAAATGTA 60.322 41.667 0.00 0.00 0.00 2.29
2630 3747 4.808558 TGAATGTTGCTGGAAAATGTAGC 58.191 39.130 0.00 0.00 37.93 3.58
2632 3749 5.047164 TGAATGTTGCTGGAAAATGTAGCAT 60.047 36.000 0.00 0.00 45.76 3.79
2634 3751 4.081406 TGTTGCTGGAAAATGTAGCATCT 58.919 39.130 0.00 0.00 45.76 2.90
2677 3822 5.006386 GTCTCTTCTGGTTTGTGAATCCAT 58.994 41.667 0.00 0.00 0.00 3.41
2678 3823 5.123027 GTCTCTTCTGGTTTGTGAATCCATC 59.877 44.000 0.00 0.00 0.00 3.51
2679 3824 4.984295 TCTTCTGGTTTGTGAATCCATCA 58.016 39.130 0.00 0.00 35.05 3.07
2680 3825 5.573219 TCTTCTGGTTTGTGAATCCATCAT 58.427 37.500 0.00 0.00 40.97 2.45
2681 3826 6.720309 TCTTCTGGTTTGTGAATCCATCATA 58.280 36.000 0.00 0.00 40.97 2.15
2682 3827 6.599244 TCTTCTGGTTTGTGAATCCATCATAC 59.401 38.462 0.00 0.00 40.97 2.39
2683 3828 5.814481 TCTGGTTTGTGAATCCATCATACA 58.186 37.500 0.00 0.00 40.97 2.29
2684 3829 5.647658 TCTGGTTTGTGAATCCATCATACAC 59.352 40.000 0.00 0.00 40.97 2.90
2708 3853 3.281158 CATGATTGTATGACACAGGCCA 58.719 45.455 5.01 0.00 38.72 5.36
2709 3854 2.989909 TGATTGTATGACACAGGCCAG 58.010 47.619 5.01 0.00 38.72 4.85
2710 3855 2.305635 TGATTGTATGACACAGGCCAGT 59.694 45.455 5.01 0.00 38.72 4.00
2712 3857 2.949177 TGTATGACACAGGCCAGTTT 57.051 45.000 5.01 0.00 31.89 2.66
2715 3860 3.326588 TGTATGACACAGGCCAGTTTACT 59.673 43.478 5.01 0.00 31.89 2.24
2732 3878 6.479001 CAGTTTACTAACCATATGGACCTTCG 59.521 42.308 28.77 10.67 38.94 3.79
2808 3960 2.763448 TGGTTTTCTGGGAGTGGTTTTG 59.237 45.455 0.00 0.00 0.00 2.44
2813 3965 2.944129 TCTGGGAGTGGTTTTGGAAAG 58.056 47.619 0.00 0.00 0.00 2.62
2815 3967 0.313987 GGGAGTGGTTTTGGAAAGCG 59.686 55.000 0.00 0.00 0.00 4.68
2816 3968 0.318699 GGAGTGGTTTTGGAAAGCGC 60.319 55.000 0.00 0.00 0.00 5.92
2820 3972 0.955905 TGGTTTTGGAAAGCGCCTAC 59.044 50.000 2.29 0.00 0.00 3.18
2830 3982 0.107654 AAGCGCCTACCCACTGATTC 60.108 55.000 2.29 0.00 0.00 2.52
2855 4008 0.515564 GTTTTAGAAGCTTCCGCGCA 59.484 50.000 22.81 0.87 42.32 6.09
2982 4154 9.734620 AAATATACGTTGGATGATGAACATTTG 57.265 29.630 0.00 0.00 39.56 2.32
3014 4211 7.279536 TGCAAGCTCAACATTTTTCAAATACAA 59.720 29.630 0.00 0.00 0.00 2.41
3055 4252 8.760103 TGAAATACACATTGAAAACATGATGG 57.240 30.769 0.00 0.00 0.00 3.51
3133 4332 9.469807 GTCATTAACAATTGTTTGAATGGTACA 57.530 29.630 29.37 17.28 40.59 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.532862 CGTGATTGATTCCCCCTCGG 60.533 60.000 0.00 0.00 0.00 4.63
1 2 0.532862 CCGTGATTGATTCCCCCTCG 60.533 60.000 0.00 0.00 0.00 4.63
2 3 0.837272 TCCGTGATTGATTCCCCCTC 59.163 55.000 0.00 0.00 0.00 4.30
3 4 0.839946 CTCCGTGATTGATTCCCCCT 59.160 55.000 0.00 0.00 0.00 4.79
4 5 0.179018 CCTCCGTGATTGATTCCCCC 60.179 60.000 0.00 0.00 0.00 5.40
5 6 0.179018 CCCTCCGTGATTGATTCCCC 60.179 60.000 0.00 0.00 0.00 4.81
6 7 0.546598 ACCCTCCGTGATTGATTCCC 59.453 55.000 0.00 0.00 0.00 3.97
7 8 1.209504 TCACCCTCCGTGATTGATTCC 59.790 52.381 0.00 0.00 46.80 3.01
8 9 2.691409 TCACCCTCCGTGATTGATTC 57.309 50.000 0.00 0.00 46.80 2.52
16 17 0.381089 GAGACGTATCACCCTCCGTG 59.619 60.000 5.07 0.00 44.50 4.94
17 18 0.255318 AGAGACGTATCACCCTCCGT 59.745 55.000 13.45 0.00 36.04 4.69
18 19 2.251409 TAGAGACGTATCACCCTCCG 57.749 55.000 13.45 0.00 0.00 4.63
19 20 2.290093 CGTTAGAGACGTATCACCCTCC 59.710 54.545 13.45 0.00 46.49 4.30
20 21 3.605743 CGTTAGAGACGTATCACCCTC 57.394 52.381 13.45 2.10 46.49 4.30
192 193 4.456535 TCCGTTTGACATTCCTTTCTGAA 58.543 39.130 0.00 0.00 0.00 3.02
193 194 4.079980 TCCGTTTGACATTCCTTTCTGA 57.920 40.909 0.00 0.00 0.00 3.27
194 195 4.829064 TTCCGTTTGACATTCCTTTCTG 57.171 40.909 0.00 0.00 0.00 3.02
195 196 7.519032 TTTATTCCGTTTGACATTCCTTTCT 57.481 32.000 0.00 0.00 0.00 2.52
196 197 7.865889 AGTTTTATTCCGTTTGACATTCCTTTC 59.134 33.333 0.00 0.00 0.00 2.62
228 229 6.183360 TGCTTTCTGGTCCAAGAAAAATCATT 60.183 34.615 13.89 0.00 43.67 2.57
250 251 3.260100 CCAAGTCCCCCAGGTGCT 61.260 66.667 0.00 0.00 0.00 4.40
251 252 3.256960 TCCAAGTCCCCCAGGTGC 61.257 66.667 0.00 0.00 0.00 5.01
254 255 0.621571 TCATCTCCAAGTCCCCCAGG 60.622 60.000 0.00 0.00 0.00 4.45
256 257 1.289160 CTTCATCTCCAAGTCCCCCA 58.711 55.000 0.00 0.00 0.00 4.96
257 258 1.210722 GACTTCATCTCCAAGTCCCCC 59.789 57.143 1.76 0.00 42.73 5.40
258 259 1.909302 TGACTTCATCTCCAAGTCCCC 59.091 52.381 9.50 0.00 46.35 4.81
261 262 3.766591 TCCTCTGACTTCATCTCCAAGTC 59.233 47.826 5.75 5.75 46.85 3.01
262 263 3.768757 CTCCTCTGACTTCATCTCCAAGT 59.231 47.826 0.00 0.00 36.77 3.16
271 272 0.404426 TCGGGACTCCTCTGACTTCA 59.596 55.000 0.00 0.00 0.00 3.02
273 274 0.323908 CCTCGGGACTCCTCTGACTT 60.324 60.000 0.00 0.00 0.00 3.01
274 275 1.304952 CCTCGGGACTCCTCTGACT 59.695 63.158 0.00 0.00 0.00 3.41
276 277 2.043852 GCCTCGGGACTCCTCTGA 60.044 66.667 0.00 0.00 0.00 3.27
293 294 2.125912 CCCTGAGGCTTGTCGTCG 60.126 66.667 0.00 0.00 32.48 5.12
294 295 2.266055 CCCCTGAGGCTTGTCGTC 59.734 66.667 0.00 0.00 0.00 4.20
337 344 2.467880 GGTTAGAGGACTCCCATGTGA 58.532 52.381 0.00 0.00 33.88 3.58
339 346 1.366435 AGGGTTAGAGGACTCCCATGT 59.634 52.381 0.00 0.00 42.12 3.21
342 349 4.015541 AGAATTAGGGTTAGAGGACTCCCA 60.016 45.833 0.00 0.00 42.12 4.37
343 350 4.558715 AGAATTAGGGTTAGAGGACTCCC 58.441 47.826 0.00 0.00 40.16 4.30
345 352 5.685337 GCCAAGAATTAGGGTTAGAGGACTC 60.685 48.000 0.00 0.00 0.00 3.36
353 360 9.582648 GAATTTATAGGCCAAGAATTAGGGTTA 57.417 33.333 5.01 0.00 0.00 2.85
381 388 5.164061 GCTTCTGTTGGTTTGCGAATATTTG 60.164 40.000 0.00 0.00 0.00 2.32
390 397 0.317854 GGACGCTTCTGTTGGTTTGC 60.318 55.000 0.00 0.00 0.00 3.68
401 408 1.021968 AGTGTTTTGGTGGACGCTTC 58.978 50.000 0.00 0.00 33.09 3.86
417 424 4.796231 CGCCCGGTCGGAGAAGTG 62.796 72.222 11.39 0.00 39.69 3.16
430 437 3.236003 AAGTCCTTCGTGGTCGCCC 62.236 63.158 0.00 0.00 37.07 6.13
431 438 1.737008 GAAGTCCTTCGTGGTCGCC 60.737 63.158 0.00 0.00 37.07 5.54
434 441 3.192844 TGATGTAGAAGTCCTTCGTGGTC 59.807 47.826 1.59 1.45 43.97 4.02
436 443 3.868757 TGATGTAGAAGTCCTTCGTGG 57.131 47.619 1.59 0.00 43.97 4.94
437 444 9.698309 ATAATATTGATGTAGAAGTCCTTCGTG 57.302 33.333 0.00 0.00 43.97 4.35
441 448 9.289782 GGCAATAATATTGATGTAGAAGTCCTT 57.710 33.333 16.45 0.00 0.00 3.36
442 449 7.885399 GGGCAATAATATTGATGTAGAAGTCCT 59.115 37.037 16.45 0.00 0.00 3.85
443 450 7.885399 AGGGCAATAATATTGATGTAGAAGTCC 59.115 37.037 16.45 4.25 0.00 3.85
444 451 8.854614 AGGGCAATAATATTGATGTAGAAGTC 57.145 34.615 16.45 0.00 0.00 3.01
445 452 9.646522 AAAGGGCAATAATATTGATGTAGAAGT 57.353 29.630 16.45 0.00 0.00 3.01
458 465 4.213270 CGCTTGATCGAAAGGGCAATAATA 59.787 41.667 1.51 0.00 33.94 0.98
471 478 0.892755 AACTACCCACGCTTGATCGA 59.107 50.000 0.00 0.00 0.00 3.59
525 532 6.592220 AGATTAAAAAGAGAGAAGAAGCCGTC 59.408 38.462 0.00 0.00 0.00 4.79
527 534 6.976636 AGATTAAAAAGAGAGAAGAAGCCG 57.023 37.500 0.00 0.00 0.00 5.52
546 553 8.722480 TCGATGAGAACATTGTATTGAAGATT 57.278 30.769 0.00 0.00 38.61 2.40
567 574 5.063438 CGGATACAACTTCAACAACATCGAT 59.937 40.000 0.00 0.00 0.00 3.59
570 577 5.856126 TCGGATACAACTTCAACAACATC 57.144 39.130 0.00 0.00 0.00 3.06
585 592 8.774586 ACTGCAAAAGAATATTACATCGGATAC 58.225 33.333 0.00 0.00 0.00 2.24
609 616 1.611977 TCGGATCTCGACAAACACACT 59.388 47.619 2.65 0.00 43.74 3.55
675 682 7.596494 TCATGCATAAAAGAGTTCAGAAAAGG 58.404 34.615 0.00 0.00 0.00 3.11
713 720 5.192927 TGCCGACAATTTGAGGAGAAATAT 58.807 37.500 15.99 0.00 0.00 1.28
722 729 5.327091 CAATCTAGTTGCCGACAATTTGAG 58.673 41.667 2.79 0.00 38.27 3.02
725 732 4.079253 ACCAATCTAGTTGCCGACAATTT 58.921 39.130 0.00 0.00 38.27 1.82
730 737 4.226761 CAAAAACCAATCTAGTTGCCGAC 58.773 43.478 0.00 0.00 36.46 4.79
735 742 6.900568 TTGCAACAAAAACCAATCTAGTTG 57.099 33.333 0.00 0.00 38.24 3.16
736 743 6.482973 CCATTGCAACAAAAACCAATCTAGTT 59.517 34.615 0.00 0.00 0.00 2.24
737 744 5.990996 CCATTGCAACAAAAACCAATCTAGT 59.009 36.000 0.00 0.00 0.00 2.57
738 745 5.409214 CCCATTGCAACAAAAACCAATCTAG 59.591 40.000 0.00 0.00 0.00 2.43
739 746 5.070981 TCCCATTGCAACAAAAACCAATCTA 59.929 36.000 0.00 0.00 0.00 1.98
740 747 4.136051 CCCATTGCAACAAAAACCAATCT 58.864 39.130 0.00 0.00 0.00 2.40
741 748 4.133078 TCCCATTGCAACAAAAACCAATC 58.867 39.130 0.00 0.00 0.00 2.67
742 749 4.136051 CTCCCATTGCAACAAAAACCAAT 58.864 39.130 0.00 0.00 0.00 3.16
743 750 3.198635 TCTCCCATTGCAACAAAAACCAA 59.801 39.130 0.00 0.00 0.00 3.67
744 751 2.768527 TCTCCCATTGCAACAAAAACCA 59.231 40.909 0.00 0.00 0.00 3.67
745 752 3.392882 CTCTCCCATTGCAACAAAAACC 58.607 45.455 0.00 0.00 0.00 3.27
746 753 3.181466 ACCTCTCCCATTGCAACAAAAAC 60.181 43.478 0.00 0.00 0.00 2.43
747 754 3.037549 ACCTCTCCCATTGCAACAAAAA 58.962 40.909 0.00 0.00 0.00 1.94
748 755 2.364970 CACCTCTCCCATTGCAACAAAA 59.635 45.455 0.00 0.00 0.00 2.44
749 756 1.962807 CACCTCTCCCATTGCAACAAA 59.037 47.619 0.00 0.00 0.00 2.83
750 757 1.619654 CACCTCTCCCATTGCAACAA 58.380 50.000 0.00 0.00 0.00 2.83
751 758 0.895100 GCACCTCTCCCATTGCAACA 60.895 55.000 0.00 0.00 34.97 3.33
752 759 0.610232 AGCACCTCTCCCATTGCAAC 60.610 55.000 0.00 0.00 37.44 4.17
753 760 0.112995 AAGCACCTCTCCCATTGCAA 59.887 50.000 0.00 0.00 37.44 4.08
754 761 0.991146 TAAGCACCTCTCCCATTGCA 59.009 50.000 0.00 0.00 37.44 4.08
755 762 2.355010 ATAAGCACCTCTCCCATTGC 57.645 50.000 0.00 0.00 35.08 3.56
756 763 6.773638 ACTAATATAAGCACCTCTCCCATTG 58.226 40.000 0.00 0.00 0.00 2.82
757 764 7.394144 AACTAATATAAGCACCTCTCCCATT 57.606 36.000 0.00 0.00 0.00 3.16
758 765 7.394144 AAACTAATATAAGCACCTCTCCCAT 57.606 36.000 0.00 0.00 0.00 4.00
759 766 6.824958 AAACTAATATAAGCACCTCTCCCA 57.175 37.500 0.00 0.00 0.00 4.37
760 767 6.486993 CCAAAACTAATATAAGCACCTCTCCC 59.513 42.308 0.00 0.00 0.00 4.30
761 768 6.486993 CCCAAAACTAATATAAGCACCTCTCC 59.513 42.308 0.00 0.00 0.00 3.71
762 769 7.054751 ACCCAAAACTAATATAAGCACCTCTC 58.945 38.462 0.00 0.00 0.00 3.20
763 770 6.970191 ACCCAAAACTAATATAAGCACCTCT 58.030 36.000 0.00 0.00 0.00 3.69
764 771 7.338449 TGAACCCAAAACTAATATAAGCACCTC 59.662 37.037 0.00 0.00 0.00 3.85
765 772 7.179269 TGAACCCAAAACTAATATAAGCACCT 58.821 34.615 0.00 0.00 0.00 4.00
766 773 7.399245 TGAACCCAAAACTAATATAAGCACC 57.601 36.000 0.00 0.00 0.00 5.01
767 774 9.516314 GATTGAACCCAAAACTAATATAAGCAC 57.484 33.333 0.00 0.00 35.67 4.40
768 775 9.474313 AGATTGAACCCAAAACTAATATAAGCA 57.526 29.630 0.00 0.00 35.67 3.91
773 780 8.899771 CCGTAAGATTGAACCCAAAACTAATAT 58.100 33.333 0.00 0.00 43.02 1.28
774 781 7.884354 ACCGTAAGATTGAACCCAAAACTAATA 59.116 33.333 0.00 0.00 43.02 0.98
775 782 6.717997 ACCGTAAGATTGAACCCAAAACTAAT 59.282 34.615 0.00 0.00 43.02 1.73
776 783 6.016943 CACCGTAAGATTGAACCCAAAACTAA 60.017 38.462 0.00 0.00 43.02 2.24
777 784 5.470777 CACCGTAAGATTGAACCCAAAACTA 59.529 40.000 0.00 0.00 43.02 2.24
778 785 4.277423 CACCGTAAGATTGAACCCAAAACT 59.723 41.667 0.00 0.00 43.02 2.66
779 786 4.542735 CACCGTAAGATTGAACCCAAAAC 58.457 43.478 0.00 0.00 43.02 2.43
780 787 3.004944 GCACCGTAAGATTGAACCCAAAA 59.995 43.478 0.00 0.00 43.02 2.44
781 788 2.554893 GCACCGTAAGATTGAACCCAAA 59.445 45.455 0.00 0.00 43.02 3.28
782 789 2.156098 GCACCGTAAGATTGAACCCAA 58.844 47.619 0.00 0.00 43.02 4.12
783 790 1.349688 AGCACCGTAAGATTGAACCCA 59.650 47.619 0.00 0.00 43.02 4.51
784 791 2.109425 AGCACCGTAAGATTGAACCC 57.891 50.000 0.00 0.00 43.02 4.11
785 792 2.414161 GCAAGCACCGTAAGATTGAACC 60.414 50.000 0.00 0.00 43.02 3.62
786 793 2.484264 AGCAAGCACCGTAAGATTGAAC 59.516 45.455 0.00 0.00 43.02 3.18
787 794 2.483877 CAGCAAGCACCGTAAGATTGAA 59.516 45.455 0.00 0.00 43.02 2.69
788 795 2.076100 CAGCAAGCACCGTAAGATTGA 58.924 47.619 0.00 0.00 43.02 2.57
789 796 1.806542 ACAGCAAGCACCGTAAGATTG 59.193 47.619 0.00 0.00 43.02 2.67
790 797 2.185004 ACAGCAAGCACCGTAAGATT 57.815 45.000 0.00 0.00 43.02 2.40
791 798 3.543680 ATACAGCAAGCACCGTAAGAT 57.456 42.857 0.00 0.00 43.02 2.40
792 799 4.500887 GGATATACAGCAAGCACCGTAAGA 60.501 45.833 0.00 0.00 43.02 2.10
793 800 3.741344 GGATATACAGCAAGCACCGTAAG 59.259 47.826 0.00 0.00 0.00 2.34
794 801 3.493699 GGGATATACAGCAAGCACCGTAA 60.494 47.826 0.00 0.00 0.00 3.18
795 802 2.036733 GGGATATACAGCAAGCACCGTA 59.963 50.000 0.00 0.00 0.00 4.02
796 803 1.202651 GGGATATACAGCAAGCACCGT 60.203 52.381 0.00 0.00 0.00 4.83
797 804 1.512926 GGGATATACAGCAAGCACCG 58.487 55.000 0.00 0.00 0.00 4.94
798 805 1.512926 CGGGATATACAGCAAGCACC 58.487 55.000 0.00 0.00 0.00 5.01
799 806 1.202651 ACCGGGATATACAGCAAGCAC 60.203 52.381 6.32 0.00 0.00 4.40
800 807 1.128200 ACCGGGATATACAGCAAGCA 58.872 50.000 6.32 0.00 0.00 3.91
801 808 1.070134 TCACCGGGATATACAGCAAGC 59.930 52.381 6.32 0.00 0.00 4.01
802 809 2.102420 TGTCACCGGGATATACAGCAAG 59.898 50.000 6.32 0.00 0.00 4.01
803 810 2.102420 CTGTCACCGGGATATACAGCAA 59.898 50.000 6.32 0.00 32.02 3.91
804 811 1.686587 CTGTCACCGGGATATACAGCA 59.313 52.381 6.32 0.00 32.02 4.41
805 812 1.000955 CCTGTCACCGGGATATACAGC 59.999 57.143 6.32 0.00 39.78 4.40
806 813 2.594131 TCCTGTCACCGGGATATACAG 58.406 52.381 6.32 11.28 41.42 2.74
807 814 2.759839 TCCTGTCACCGGGATATACA 57.240 50.000 6.32 1.23 41.42 2.29
808 815 2.299297 CCTTCCTGTCACCGGGATATAC 59.701 54.545 6.32 0.00 45.73 1.47
809 816 2.178325 TCCTTCCTGTCACCGGGATATA 59.822 50.000 6.32 0.00 45.73 0.86
810 817 1.062428 TCCTTCCTGTCACCGGGATAT 60.062 52.381 6.32 0.00 45.73 1.63
811 818 0.337082 TCCTTCCTGTCACCGGGATA 59.663 55.000 6.32 0.00 45.73 2.59
812 819 0.546747 TTCCTTCCTGTCACCGGGAT 60.547 55.000 6.32 0.00 45.73 3.85
813 820 1.152204 TTCCTTCCTGTCACCGGGA 60.152 57.895 6.32 0.00 44.74 5.14
814 821 1.296715 CTTCCTTCCTGTCACCGGG 59.703 63.158 6.32 0.00 38.61 5.73
815 822 1.296715 CCTTCCTTCCTGTCACCGG 59.703 63.158 0.00 0.00 0.00 5.28
816 823 1.192146 TCCCTTCCTTCCTGTCACCG 61.192 60.000 0.00 0.00 0.00 4.94
817 824 0.325272 GTCCCTTCCTTCCTGTCACC 59.675 60.000 0.00 0.00 0.00 4.02
818 825 1.056660 TGTCCCTTCCTTCCTGTCAC 58.943 55.000 0.00 0.00 0.00 3.67
819 826 1.814429 TTGTCCCTTCCTTCCTGTCA 58.186 50.000 0.00 0.00 0.00 3.58
820 827 2.372172 TCTTTGTCCCTTCCTTCCTGTC 59.628 50.000 0.00 0.00 0.00 3.51
821 828 2.373502 CTCTTTGTCCCTTCCTTCCTGT 59.626 50.000 0.00 0.00 0.00 4.00
822 829 2.290577 CCTCTTTGTCCCTTCCTTCCTG 60.291 54.545 0.00 0.00 0.00 3.86
823 830 1.988846 CCTCTTTGTCCCTTCCTTCCT 59.011 52.381 0.00 0.00 0.00 3.36
824 831 1.705745 ACCTCTTTGTCCCTTCCTTCC 59.294 52.381 0.00 0.00 0.00 3.46
825 832 2.784347 CACCTCTTTGTCCCTTCCTTC 58.216 52.381 0.00 0.00 0.00 3.46
826 833 1.202940 GCACCTCTTTGTCCCTTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
827 834 0.402121 GCACCTCTTTGTCCCTTCCT 59.598 55.000 0.00 0.00 0.00 3.36
828 835 0.402121 AGCACCTCTTTGTCCCTTCC 59.598 55.000 0.00 0.00 0.00 3.46
829 836 2.278332 AAGCACCTCTTTGTCCCTTC 57.722 50.000 0.00 0.00 0.00 3.46
830 837 2.755952 AAAGCACCTCTTTGTCCCTT 57.244 45.000 0.00 0.00 43.04 3.95
837 844 6.547510 AGAAAACTATCACAAAGCACCTCTTT 59.452 34.615 0.00 0.00 45.43 2.52
838 845 6.064717 AGAAAACTATCACAAAGCACCTCTT 58.935 36.000 0.00 0.00 36.34 2.85
839 846 5.625150 AGAAAACTATCACAAAGCACCTCT 58.375 37.500 0.00 0.00 0.00 3.69
840 847 5.948992 AGAAAACTATCACAAAGCACCTC 57.051 39.130 0.00 0.00 0.00 3.85
841 848 7.168219 TCATAGAAAACTATCACAAAGCACCT 58.832 34.615 0.00 0.00 0.00 4.00
842 849 7.377766 TCATAGAAAACTATCACAAAGCACC 57.622 36.000 0.00 0.00 0.00 5.01
843 850 9.282247 CATTCATAGAAAACTATCACAAAGCAC 57.718 33.333 0.00 0.00 0.00 4.40
844 851 9.230122 TCATTCATAGAAAACTATCACAAAGCA 57.770 29.630 0.00 0.00 0.00 3.91
878 885 9.752961 TGATGATGATTATTATGCCAAAACTTG 57.247 29.630 0.00 0.00 0.00 3.16
893 900 9.017509 GGGCTCTTTTGATTATGATGATGATTA 57.982 33.333 0.00 0.00 0.00 1.75
894 901 7.507956 TGGGCTCTTTTGATTATGATGATGATT 59.492 33.333 0.00 0.00 0.00 2.57
895 902 7.008332 TGGGCTCTTTTGATTATGATGATGAT 58.992 34.615 0.00 0.00 0.00 2.45
896 903 6.367161 TGGGCTCTTTTGATTATGATGATGA 58.633 36.000 0.00 0.00 0.00 2.92
897 904 6.644248 TGGGCTCTTTTGATTATGATGATG 57.356 37.500 0.00 0.00 0.00 3.07
898 905 6.041296 GGTTGGGCTCTTTTGATTATGATGAT 59.959 38.462 0.00 0.00 0.00 2.45
899 906 5.360714 GGTTGGGCTCTTTTGATTATGATGA 59.639 40.000 0.00 0.00 0.00 2.92
900 907 5.452356 GGGTTGGGCTCTTTTGATTATGATG 60.452 44.000 0.00 0.00 0.00 3.07
901 908 4.651045 GGGTTGGGCTCTTTTGATTATGAT 59.349 41.667 0.00 0.00 0.00 2.45
902 909 4.023291 GGGTTGGGCTCTTTTGATTATGA 58.977 43.478 0.00 0.00 0.00 2.15
903 910 3.768757 TGGGTTGGGCTCTTTTGATTATG 59.231 43.478 0.00 0.00 0.00 1.90
904 911 4.026052 CTGGGTTGGGCTCTTTTGATTAT 58.974 43.478 0.00 0.00 0.00 1.28
905 912 3.430453 CTGGGTTGGGCTCTTTTGATTA 58.570 45.455 0.00 0.00 0.00 1.75
906 913 2.250924 CTGGGTTGGGCTCTTTTGATT 58.749 47.619 0.00 0.00 0.00 2.57
907 914 1.928868 CTGGGTTGGGCTCTTTTGAT 58.071 50.000 0.00 0.00 0.00 2.57
908 915 0.827507 GCTGGGTTGGGCTCTTTTGA 60.828 55.000 0.00 0.00 0.00 2.69
909 916 1.667722 GCTGGGTTGGGCTCTTTTG 59.332 57.895 0.00 0.00 0.00 2.44
910 917 1.903404 CGCTGGGTTGGGCTCTTTT 60.903 57.895 0.00 0.00 0.00 2.27
911 918 2.282462 CGCTGGGTTGGGCTCTTT 60.282 61.111 0.00 0.00 0.00 2.52
912 919 4.351054 CCGCTGGGTTGGGCTCTT 62.351 66.667 0.00 0.00 0.00 2.85
914 921 4.785453 CTCCGCTGGGTTGGGCTC 62.785 72.222 0.00 0.00 33.83 4.70
917 924 4.410400 GGACTCCGCTGGGTTGGG 62.410 72.222 0.00 0.00 33.83 4.12
918 925 3.636231 TGGACTCCGCTGGGTTGG 61.636 66.667 0.00 0.00 33.83 3.77
919 926 2.358737 GTGGACTCCGCTGGGTTG 60.359 66.667 0.94 0.00 33.83 3.77
920 927 2.526873 AGTGGACTCCGCTGGGTT 60.527 61.111 10.55 0.00 43.37 4.11
921 928 2.997897 GAGTGGACTCCGCTGGGT 60.998 66.667 16.23 0.00 45.19 4.51
922 929 4.135153 CGAGTGGACTCCGCTGGG 62.135 72.222 16.23 4.08 45.19 4.45
923 930 3.062466 TCGAGTGGACTCCGCTGG 61.062 66.667 16.23 14.55 45.19 4.85
924 931 2.179517 GTCGAGTGGACTCCGCTG 59.820 66.667 16.23 8.49 45.19 5.18
926 933 4.131088 GGGTCGAGTGGACTCCGC 62.131 72.222 5.21 0.00 45.35 5.54
930 937 2.037527 GGGAGGGTCGAGTGGACT 59.962 66.667 5.21 0.00 45.35 3.85
931 938 2.037527 AGGGAGGGTCGAGTGGAC 59.962 66.667 0.00 0.00 45.31 4.02
932 939 2.359404 GAGGGAGGGTCGAGTGGA 59.641 66.667 0.00 0.00 0.00 4.02
933 940 2.760385 GGAGGGAGGGTCGAGTGG 60.760 72.222 0.00 0.00 0.00 4.00
934 941 2.760385 GGGAGGGAGGGTCGAGTG 60.760 72.222 0.00 0.00 0.00 3.51
935 942 4.444081 CGGGAGGGAGGGTCGAGT 62.444 72.222 0.00 0.00 0.00 4.18
936 943 3.438615 ATCGGGAGGGAGGGTCGAG 62.439 68.421 0.00 0.00 33.32 4.04
937 944 3.426836 ATCGGGAGGGAGGGTCGA 61.427 66.667 0.00 0.00 0.00 4.20
938 945 2.913060 GATCGGGAGGGAGGGTCG 60.913 72.222 0.00 0.00 0.00 4.79
939 946 2.524640 GGATCGGGAGGGAGGGTC 60.525 72.222 0.00 0.00 0.00 4.46
940 947 4.173701 GGGATCGGGAGGGAGGGT 62.174 72.222 0.00 0.00 0.00 4.34
941 948 4.964241 GGGGATCGGGAGGGAGGG 62.964 77.778 0.00 0.00 0.00 4.30
942 949 4.172232 TGGGGATCGGGAGGGAGG 62.172 72.222 0.00 0.00 0.00 4.30
943 950 2.844839 GTGGGGATCGGGAGGGAG 60.845 72.222 0.00 0.00 0.00 4.30
944 951 4.492303 GGTGGGGATCGGGAGGGA 62.492 72.222 0.00 0.00 0.00 4.20
961 968 4.705216 TTAGGGGTGGGGGTGGGG 62.705 72.222 0.00 0.00 0.00 4.96
962 969 3.344176 GTTAGGGGTGGGGGTGGG 61.344 72.222 0.00 0.00 0.00 4.61
963 970 3.344176 GGTTAGGGGTGGGGGTGG 61.344 72.222 0.00 0.00 0.00 4.61
964 971 3.344176 GGGTTAGGGGTGGGGGTG 61.344 72.222 0.00 0.00 0.00 4.61
965 972 3.890405 TGGGTTAGGGGTGGGGGT 61.890 66.667 0.00 0.00 0.00 4.95
966 973 3.021263 CTGGGTTAGGGGTGGGGG 61.021 72.222 0.00 0.00 0.00 5.40
967 974 3.739613 GCTGGGTTAGGGGTGGGG 61.740 72.222 0.00 0.00 0.00 4.96
968 975 2.938798 TGCTGGGTTAGGGGTGGG 60.939 66.667 0.00 0.00 0.00 4.61
969 976 2.677228 CTGCTGGGTTAGGGGTGG 59.323 66.667 0.00 0.00 0.00 4.61
970 977 1.915078 CTCCTGCTGGGTTAGGGGTG 61.915 65.000 10.07 0.00 34.76 4.61
971 978 1.616628 CTCCTGCTGGGTTAGGGGT 60.617 63.158 10.07 0.00 34.76 4.95
972 979 2.378634 CCTCCTGCTGGGTTAGGGG 61.379 68.421 10.07 0.00 34.76 4.79
973 980 3.049080 GCCTCCTGCTGGGTTAGGG 62.049 68.421 15.14 9.07 36.87 3.53
974 981 2.262774 CTGCCTCCTGCTGGGTTAGG 62.263 65.000 10.07 10.35 42.00 2.69
975 982 1.222936 CTGCCTCCTGCTGGGTTAG 59.777 63.158 10.07 0.00 42.00 2.34
976 983 3.403624 CTGCCTCCTGCTGGGTTA 58.596 61.111 10.07 0.00 42.00 2.85
981 988 4.798344 CTGGCCTGCCTCCTGCTG 62.798 72.222 9.97 0.00 42.00 4.41
984 991 4.124943 ATGCTGGCCTGCCTCCTG 62.125 66.667 29.35 0.00 36.94 3.86
985 992 4.124943 CATGCTGGCCTGCCTCCT 62.125 66.667 29.35 10.67 36.94 3.69
987 994 4.119363 TCCATGCTGGCCTGCCTC 62.119 66.667 29.35 5.50 37.47 4.70
988 995 4.437587 GTCCATGCTGGCCTGCCT 62.438 66.667 29.35 18.73 37.47 4.75
989 996 4.437587 AGTCCATGCTGGCCTGCC 62.438 66.667 29.35 14.90 37.47 4.85
990 997 2.827642 GAGTCCATGCTGGCCTGC 60.828 66.667 26.46 26.46 37.47 4.85
991 998 2.124403 GGAGTCCATGCTGGCCTG 60.124 66.667 3.32 4.26 37.47 4.85
992 999 3.790437 CGGAGTCCATGCTGGCCT 61.790 66.667 10.49 0.00 37.47 5.19
993 1000 4.864334 CCGGAGTCCATGCTGGCC 62.864 72.222 10.49 0.00 37.47 5.36
1158 1165 1.805945 CAAGACCCTGAGCGCGTAC 60.806 63.158 8.43 2.47 0.00 3.67
1168 1175 1.553690 CCGTGGATGGACAAGACCCT 61.554 60.000 0.00 0.00 0.00 4.34
1209 1216 0.178987 TGAGGAGGTAGATCCCGAGC 60.179 60.000 0.00 0.00 40.53 5.03
1335 1345 0.469070 CTGGGAGCCTCCTGATGAAG 59.531 60.000 11.29 0.00 36.57 3.02
1390 1400 2.534990 GGAGGAGTAGATGGATCTGGG 58.465 57.143 0.00 0.00 37.76 4.45
1414 1424 0.607112 ATCTGGATCTGCGCGATGAT 59.393 50.000 12.10 12.56 30.84 2.45
1415 1425 0.038801 GATCTGGATCTGCGCGATGA 60.039 55.000 12.10 7.20 35.04 2.92
1420 1430 0.321021 ATCTGGATCTGGATCTGCGC 59.679 55.000 0.00 0.00 37.92 6.09
1422 1432 1.976404 TGGATCTGGATCTGGATCTGC 59.024 52.381 19.69 10.52 38.56 4.26
1457 1474 2.618794 CAGGGCTCCCAGAAGATAGAT 58.381 52.381 7.82 0.00 38.92 1.98
1459 1476 0.396060 GCAGGGCTCCCAGAAGATAG 59.604 60.000 7.82 0.00 38.92 2.08
1464 1481 2.759114 CAAGCAGGGCTCCCAGAA 59.241 61.111 7.82 0.00 38.25 3.02
1469 1486 2.832201 GGATGCAAGCAGGGCTCC 60.832 66.667 0.00 0.00 38.25 4.70
1470 1487 1.823041 GAGGATGCAAGCAGGGCTC 60.823 63.158 0.00 0.00 38.25 4.70
1471 1488 2.274760 GAGGATGCAAGCAGGGCT 59.725 61.111 0.00 0.00 42.56 5.19
1476 1493 1.300963 GGACTGGAGGATGCAAGCA 59.699 57.895 0.00 0.00 34.45 3.91
1477 1494 0.747283 CTGGACTGGAGGATGCAAGC 60.747 60.000 0.00 0.00 34.45 4.01
1481 1498 0.033228 CGATCTGGACTGGAGGATGC 59.967 60.000 0.00 0.00 0.00 3.91
1482 1499 0.033228 GCGATCTGGACTGGAGGATG 59.967 60.000 0.00 0.00 0.00 3.51
1483 1500 0.397675 TGCGATCTGGACTGGAGGAT 60.398 55.000 0.00 0.00 0.00 3.24
1484 1501 0.614697 TTGCGATCTGGACTGGAGGA 60.615 55.000 0.00 0.00 0.00 3.71
1486 1503 2.158986 AGATTTGCGATCTGGACTGGAG 60.159 50.000 1.94 0.00 0.00 3.86
1487 1504 1.833630 AGATTTGCGATCTGGACTGGA 59.166 47.619 1.94 0.00 0.00 3.86
1490 1507 2.102252 GGAGAGATTTGCGATCTGGACT 59.898 50.000 7.09 0.00 0.00 3.85
1491 1508 2.478831 GGAGAGATTTGCGATCTGGAC 58.521 52.381 7.09 0.08 0.00 4.02
1565 1600 8.515695 TTCACAAGCAAGATTTGAGATATCAT 57.484 30.769 5.32 0.00 0.00 2.45
1567 1602 8.618677 TCATTCACAAGCAAGATTTGAGATATC 58.381 33.333 0.00 0.00 0.00 1.63
1569 1604 7.926674 TCATTCACAAGCAAGATTTGAGATA 57.073 32.000 0.00 0.00 0.00 1.98
1570 1605 6.829229 TCATTCACAAGCAAGATTTGAGAT 57.171 33.333 0.00 0.00 0.00 2.75
1571 1606 6.638096 TTCATTCACAAGCAAGATTTGAGA 57.362 33.333 0.00 0.00 0.00 3.27
1574 1609 7.646446 TTCATTCATTCACAAGCAAGATTTG 57.354 32.000 0.00 0.00 0.00 2.32
1575 1610 8.092068 TCATTCATTCATTCACAAGCAAGATTT 58.908 29.630 0.00 0.00 0.00 2.17
1576 1611 7.608153 TCATTCATTCATTCACAAGCAAGATT 58.392 30.769 0.00 0.00 0.00 2.40
1578 1613 6.578163 TCATTCATTCATTCACAAGCAAGA 57.422 33.333 0.00 0.00 0.00 3.02
1580 1615 7.379750 TCATTCATTCATTCATTCACAAGCAA 58.620 30.769 0.00 0.00 0.00 3.91
1582 1617 7.758076 TCTTCATTCATTCATTCATTCACAAGC 59.242 33.333 0.00 0.00 0.00 4.01
1595 1788 9.524106 GCATGATTTGTATTCTTCATTCATTCA 57.476 29.630 0.00 0.00 0.00 2.57
1596 1789 9.524106 TGCATGATTTGTATTCTTCATTCATTC 57.476 29.630 0.00 0.00 0.00 2.67
1611 1804 7.994334 AGCCCAAATAAATAATGCATGATTTGT 59.006 29.630 26.28 19.41 33.16 2.83
1612 1805 8.385898 AGCCCAAATAAATAATGCATGATTTG 57.614 30.769 26.28 20.67 33.98 2.32
1614 1807 8.212312 TCAAGCCCAAATAAATAATGCATGATT 58.788 29.630 3.15 3.15 0.00 2.57
1615 1808 7.737869 TCAAGCCCAAATAAATAATGCATGAT 58.262 30.769 0.00 0.00 0.00 2.45
1616 1809 7.122138 TCAAGCCCAAATAAATAATGCATGA 57.878 32.000 0.00 0.00 0.00 3.07
1617 1810 6.987992 ACTCAAGCCCAAATAAATAATGCATG 59.012 34.615 0.00 0.00 0.00 4.06
1618 1811 7.128234 ACTCAAGCCCAAATAAATAATGCAT 57.872 32.000 0.00 0.00 0.00 3.96
1620 1813 7.334171 ACAAACTCAAGCCCAAATAAATAATGC 59.666 33.333 0.00 0.00 0.00 3.56
1621 1814 8.776376 ACAAACTCAAGCCCAAATAAATAATG 57.224 30.769 0.00 0.00 0.00 1.90
1623 1816 9.084533 ACTACAAACTCAAGCCCAAATAAATAA 57.915 29.630 0.00 0.00 0.00 1.40
1624 1817 8.519526 CACTACAAACTCAAGCCCAAATAAATA 58.480 33.333 0.00 0.00 0.00 1.40
1626 1819 6.322712 ACACTACAAACTCAAGCCCAAATAAA 59.677 34.615 0.00 0.00 0.00 1.40
1627 1820 5.830991 ACACTACAAACTCAAGCCCAAATAA 59.169 36.000 0.00 0.00 0.00 1.40
1631 1936 3.290948 ACACTACAAACTCAAGCCCAA 57.709 42.857 0.00 0.00 0.00 4.12
1644 1949 6.503589 AAGTTGCTACAAACAAACACTACA 57.496 33.333 0.13 0.00 32.21 2.74
1645 1950 7.465989 TGTAAGTTGCTACAAACAAACACTAC 58.534 34.615 0.13 0.00 32.21 2.73
1648 1953 6.790336 CTGTAAGTTGCTACAAACAAACAC 57.210 37.500 0.13 0.00 31.51 3.32
1669 2550 6.148976 TGAATGAAGAGCTCAAAGAATCACTG 59.851 38.462 17.77 0.00 37.67 3.66
1671 2552 6.313252 GTGAATGAAGAGCTCAAAGAATCAC 58.687 40.000 17.77 17.29 37.67 3.06
1680 2561 2.004733 CATGCGTGAATGAAGAGCTCA 58.995 47.619 17.77 0.00 38.81 4.26
1686 2567 2.995466 ACAACCATGCGTGAATGAAG 57.005 45.000 7.72 0.00 0.00 3.02
1693 2574 5.523552 TGATAGAATAGAACAACCATGCGTG 59.476 40.000 0.00 0.00 0.00 5.34
1700 2581 6.591935 TCCATGGTGATAGAATAGAACAACC 58.408 40.000 12.58 0.00 0.00 3.77
1705 2586 9.565090 CTCAAATTCCATGGTGATAGAATAGAA 57.435 33.333 12.58 0.00 0.00 2.10
1706 2587 7.663081 GCTCAAATTCCATGGTGATAGAATAGA 59.337 37.037 12.58 4.47 0.00 1.98
1707 2588 7.446319 TGCTCAAATTCCATGGTGATAGAATAG 59.554 37.037 12.58 0.00 0.00 1.73
1709 2590 6.040166 GTGCTCAAATTCCATGGTGATAGAAT 59.960 38.462 12.58 0.00 0.00 2.40
1716 2602 1.541147 ACGTGCTCAAATTCCATGGTG 59.459 47.619 12.58 2.27 0.00 4.17
1744 2630 5.768980 ATGGTGGTTCTATCTATGGGATG 57.231 43.478 0.00 0.00 35.98 3.51
1808 2712 8.789762 CAAATATCATCATGCATACCTGAAGAA 58.210 33.333 0.00 0.00 0.00 2.52
1809 2713 7.940688 ACAAATATCATCATGCATACCTGAAGA 59.059 33.333 0.00 0.00 0.00 2.87
1810 2714 8.107399 ACAAATATCATCATGCATACCTGAAG 57.893 34.615 0.00 0.00 0.00 3.02
1811 2715 8.467963 AACAAATATCATCATGCATACCTGAA 57.532 30.769 0.00 0.00 0.00 3.02
1812 2716 8.354426 CAAACAAATATCATCATGCATACCTGA 58.646 33.333 0.00 3.07 0.00 3.86
1814 2718 7.149973 GCAAACAAATATCATCATGCATACCT 58.850 34.615 0.00 0.00 33.00 3.08
1815 2719 6.366877 GGCAAACAAATATCATCATGCATACC 59.633 38.462 0.00 0.00 34.37 2.73
1816 2720 6.366877 GGGCAAACAAATATCATCATGCATAC 59.633 38.462 0.00 0.00 34.37 2.39
1818 2722 5.302360 GGGCAAACAAATATCATCATGCAT 58.698 37.500 0.00 0.00 34.37 3.96
1819 2723 4.695396 GGGCAAACAAATATCATCATGCA 58.305 39.130 0.00 0.00 34.37 3.96
1820 2724 3.737266 CGGGCAAACAAATATCATCATGC 59.263 43.478 0.00 0.00 0.00 4.06
1821 2725 4.741185 CACGGGCAAACAAATATCATCATG 59.259 41.667 0.00 0.00 0.00 3.07
1822 2726 4.737352 GCACGGGCAAACAAATATCATCAT 60.737 41.667 3.77 0.00 40.72 2.45
1823 2727 3.428725 GCACGGGCAAACAAATATCATCA 60.429 43.478 3.77 0.00 40.72 3.07
1873 2865 9.766277 GAAGAAAGTCATGACAAAAGCTATAAG 57.234 33.333 27.02 0.00 0.00 1.73
1902 2894 1.105167 AGACAGGGACGTCGAACACA 61.105 55.000 9.92 0.00 40.98 3.72
2035 3028 1.336131 AACAGAGAGAGCAGCAGACA 58.664 50.000 0.00 0.00 0.00 3.41
2039 3032 3.482156 AGAAAAACAGAGAGAGCAGCA 57.518 42.857 0.00 0.00 0.00 4.41
2042 3035 4.130118 GGACAAGAAAAACAGAGAGAGCA 58.870 43.478 0.00 0.00 0.00 4.26
2043 3036 4.024472 GTGGACAAGAAAAACAGAGAGAGC 60.024 45.833 0.00 0.00 0.00 4.09
2046 3039 4.260948 GCAGTGGACAAGAAAAACAGAGAG 60.261 45.833 0.00 0.00 0.00 3.20
2047 3040 3.627577 GCAGTGGACAAGAAAAACAGAGA 59.372 43.478 0.00 0.00 0.00 3.10
2091 3178 4.385310 GCCTAAAGACCCATGATACCAACT 60.385 45.833 0.00 0.00 0.00 3.16
2092 3179 3.883489 GCCTAAAGACCCATGATACCAAC 59.117 47.826 0.00 0.00 0.00 3.77
2093 3180 3.525609 TGCCTAAAGACCCATGATACCAA 59.474 43.478 0.00 0.00 0.00 3.67
2094 3181 3.119319 TGCCTAAAGACCCATGATACCA 58.881 45.455 0.00 0.00 0.00 3.25
2107 3194 7.774157 AGATGGAATGATATGCTATGCCTAAAG 59.226 37.037 0.00 0.00 0.00 1.85
2109 3196 7.204243 AGATGGAATGATATGCTATGCCTAA 57.796 36.000 0.00 0.00 0.00 2.69
2110 3197 6.462067 CGAGATGGAATGATATGCTATGCCTA 60.462 42.308 0.00 0.00 0.00 3.93
2111 3198 5.682659 GAGATGGAATGATATGCTATGCCT 58.317 41.667 0.00 0.00 0.00 4.75
2112 3199 4.510711 CGAGATGGAATGATATGCTATGCC 59.489 45.833 0.00 0.00 0.00 4.40
2149 3236 5.131594 TGATGAATGAATGAAACGGCAAA 57.868 34.783 0.00 0.00 0.00 3.68
2150 3237 4.780275 TGATGAATGAATGAAACGGCAA 57.220 36.364 0.00 0.00 0.00 4.52
2151 3238 4.987408 ATGATGAATGAATGAAACGGCA 57.013 36.364 0.00 0.00 0.00 5.69
2165 3252 6.826668 ACCGGAACAGACATTATATGATGAA 58.173 36.000 9.46 0.00 0.00 2.57
2289 3392 2.511600 ACTGTATCTTGCGCCCGC 60.512 61.111 4.18 5.60 42.35 6.13
2290 3393 1.883084 GGACTGTATCTTGCGCCCG 60.883 63.158 4.18 0.00 0.00 6.13
2291 3394 0.392461 TTGGACTGTATCTTGCGCCC 60.392 55.000 4.18 0.00 0.00 6.13
2292 3395 0.727398 GTTGGACTGTATCTTGCGCC 59.273 55.000 4.18 0.00 0.00 6.53
2293 3396 1.438651 TGTTGGACTGTATCTTGCGC 58.561 50.000 0.00 0.00 0.00 6.09
2294 3397 2.805671 TGTTGTTGGACTGTATCTTGCG 59.194 45.455 0.00 0.00 0.00 4.85
2295 3398 4.320494 CCTTGTTGTTGGACTGTATCTTGC 60.320 45.833 0.00 0.00 0.00 4.01
2296 3399 4.320494 GCCTTGTTGTTGGACTGTATCTTG 60.320 45.833 0.00 0.00 0.00 3.02
2308 3411 4.925054 CACATGGAATAAGCCTTGTTGTTG 59.075 41.667 0.00 0.00 42.44 3.33
2312 3415 2.497273 GGCACATGGAATAAGCCTTGTT 59.503 45.455 0.00 0.00 42.44 2.83
2326 3429 5.627499 AGTATTACACTTGTTGGCACATG 57.373 39.130 0.00 0.00 32.37 3.21
2438 3551 7.224753 ACAATAACTGACAGTGACACAAGTAAG 59.775 37.037 9.33 10.62 0.00 2.34
2556 3673 5.663106 ACAGCAGAGTTGGATCTAGGATTTA 59.337 40.000 0.00 0.00 0.00 1.40
2587 3704 1.644786 GCGCCTGAGTAAACGGCAAT 61.645 55.000 0.00 0.00 43.95 3.56
2589 3706 2.740826 GCGCCTGAGTAAACGGCA 60.741 61.111 0.00 0.00 43.95 5.69
2603 3720 1.865788 TTCCAGCAACATTCAGGCGC 61.866 55.000 0.00 0.00 0.00 6.53
2616 3733 5.314923 TCAAAGATGCTACATTTTCCAGC 57.685 39.130 0.00 0.00 35.82 4.85
2619 3736 7.710896 AGCTAATCAAAGATGCTACATTTTCC 58.289 34.615 0.00 0.00 31.71 3.13
2620 3737 8.400947 TGAGCTAATCAAAGATGCTACATTTTC 58.599 33.333 0.00 0.00 34.02 2.29
2621 3738 8.284945 TGAGCTAATCAAAGATGCTACATTTT 57.715 30.769 0.00 0.00 34.02 1.82
2622 3739 7.870509 TGAGCTAATCAAAGATGCTACATTT 57.129 32.000 0.00 0.00 34.02 2.32
2623 3740 7.870509 TTGAGCTAATCAAAGATGCTACATT 57.129 32.000 0.00 0.00 45.00 2.71
2680 3825 7.264947 CCTGTGTCATACAATCATGTAGTGTA 58.735 38.462 7.54 7.54 44.85 2.90
2681 3826 6.108687 CCTGTGTCATACAATCATGTAGTGT 58.891 40.000 0.00 0.00 44.85 3.55
2682 3827 5.007039 GCCTGTGTCATACAATCATGTAGTG 59.993 44.000 0.00 0.00 44.85 2.74
2683 3828 5.118990 GCCTGTGTCATACAATCATGTAGT 58.881 41.667 0.00 0.00 44.85 2.73
2684 3829 4.512944 GGCCTGTGTCATACAATCATGTAG 59.487 45.833 0.00 0.00 44.85 2.74
2708 3853 6.155737 ACGAAGGTCCATATGGTTAGTAAACT 59.844 38.462 21.28 6.13 35.81 2.66
2709 3854 6.343703 ACGAAGGTCCATATGGTTAGTAAAC 58.656 40.000 21.28 9.99 36.34 2.01
2710 3855 6.549433 ACGAAGGTCCATATGGTTAGTAAA 57.451 37.500 21.28 0.00 36.34 2.01
2712 3857 6.367983 ACTACGAAGGTCCATATGGTTAGTA 58.632 40.000 21.28 16.09 36.34 1.82
2715 3860 5.657745 TCAACTACGAAGGTCCATATGGTTA 59.342 40.000 21.28 0.00 36.34 2.85
2732 3878 2.759538 ATAGCTCTCGCGTCAACTAC 57.240 50.000 5.77 0.00 42.32 2.73
2753 3899 2.255406 TGGGCTGGCAAACAATATTGT 58.745 42.857 15.47 15.47 44.72 2.71
2755 3901 2.839425 ACATGGGCTGGCAAACAATATT 59.161 40.909 2.88 0.00 0.00 1.28
2756 3902 2.168936 CACATGGGCTGGCAAACAATAT 59.831 45.455 2.88 0.00 0.00 1.28
2757 3903 1.549620 CACATGGGCTGGCAAACAATA 59.450 47.619 2.88 0.00 0.00 1.90
2758 3904 0.322322 CACATGGGCTGGCAAACAAT 59.678 50.000 2.88 0.00 0.00 2.71
2760 3906 1.457267 ACACATGGGCTGGCAAACA 60.457 52.632 2.88 0.00 0.00 2.83
2763 3909 1.457267 AACACACATGGGCTGGCAA 60.457 52.632 2.88 0.00 0.00 4.52
2765 3911 2.639327 GGAACACACATGGGCTGGC 61.639 63.158 0.00 0.00 0.00 4.85
2766 3912 1.075482 AGGAACACACATGGGCTGG 59.925 57.895 0.00 0.00 0.00 4.85
2768 3914 0.185901 AACAGGAACACACATGGGCT 59.814 50.000 0.00 0.00 0.00 5.19
2808 3960 1.745489 CAGTGGGTAGGCGCTTTCC 60.745 63.158 7.64 7.08 0.00 3.13
2813 3965 1.883084 CGAATCAGTGGGTAGGCGC 60.883 63.158 0.00 0.00 0.00 6.53
2815 3967 1.090052 GTGCGAATCAGTGGGTAGGC 61.090 60.000 0.00 0.00 0.00 3.93
2816 3968 0.462047 GGTGCGAATCAGTGGGTAGG 60.462 60.000 0.00 0.00 0.00 3.18
2820 3972 1.234615 AAACGGTGCGAATCAGTGGG 61.235 55.000 0.00 0.00 0.00 4.61
2830 3982 1.136057 GGAAGCTTCTAAAACGGTGCG 60.136 52.381 25.05 0.00 0.00 5.34
2982 4154 3.855689 AATGTTGAGCTTGCATACCAC 57.144 42.857 0.00 0.00 0.00 4.16
3112 4310 9.653287 TGTTTTGTACCATTCAAACAATTGTTA 57.347 25.926 23.53 9.40 37.25 2.41
3185 4390 9.773328 ATGTGTTTCAAAATATGTTCGTGATAG 57.227 29.630 0.00 0.00 0.00 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.