Multiple sequence alignment - TraesCS3A01G002200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G002200 chr3A 100.000 3638 0 0 1 3638 1391448 1387811 0.000000e+00 6719.0
1 TraesCS3A01G002200 chr3A 84.229 558 68 7 383 922 692028829 692029384 3.220000e-145 525.0
2 TraesCS3A01G002200 chr3A 82.406 557 77 10 383 922 267384644 267384092 1.980000e-127 466.0
3 TraesCS3A01G002200 chr3A 82.297 209 32 5 182 388 539881503 539881298 3.730000e-40 176.0
4 TraesCS3A01G002200 chr3B 89.886 1671 157 9 1 1661 1615559 1613891 0.000000e+00 2139.0
5 TraesCS3A01G002200 chr3B 92.262 840 42 14 1886 2705 1613577 1612741 0.000000e+00 1170.0
6 TraesCS3A01G002200 chr3B 84.762 525 61 6 416 922 786001182 786001705 3.240000e-140 508.0
7 TraesCS3A01G002200 chr3B 93.496 246 11 2 1661 1902 1613834 1613590 9.600000e-96 361.0
8 TraesCS3A01G002200 chr3B 91.195 159 6 3 2905 3063 1612295 1612145 3.680000e-50 209.0
9 TraesCS3A01G002200 chr3B 83.784 111 7 6 3025 3125 1596715 1596606 1.080000e-15 95.3
10 TraesCS3A01G002200 chr6B 93.957 513 24 5 3127 3638 720754665 720755171 0.000000e+00 769.0
11 TraesCS3A01G002200 chr6B 84.393 173 23 3 217 386 663462527 663462698 2.250000e-37 167.0
12 TraesCS3A01G002200 chr4B 84.588 558 66 6 383 922 95212859 95212304 1.490000e-148 536.0
13 TraesCS3A01G002200 chr4B 85.294 68 8 2 48 114 488579406 488579472 6.520000e-08 69.4
14 TraesCS3A01G002200 chr5B 84.560 557 66 6 383 921 599402242 599401688 5.350000e-148 534.0
15 TraesCS3A01G002200 chrUn 84.229 558 68 7 383 922 162320915 162321470 3.220000e-145 525.0
16 TraesCS3A01G002200 chr2A 84.229 558 68 7 383 922 744129844 744129289 3.220000e-145 525.0
17 TraesCS3A01G002200 chr2A 82.765 557 77 11 383 922 110373535 110372981 2.540000e-131 479.0
18 TraesCS3A01G002200 chr2A 87.452 263 31 2 1715 1975 529802933 529802671 5.900000e-78 302.0
19 TraesCS3A01G002200 chr1B 85.333 525 58 7 416 922 197868511 197867988 3.220000e-145 525.0
20 TraesCS3A01G002200 chr1B 84.229 558 68 6 383 922 345665912 345665357 3.220000e-145 525.0
21 TraesCS3A01G002200 chr1A 83.124 557 74 8 383 922 16273766 16274319 1.170000e-134 490.0
22 TraesCS3A01G002200 chr1A 80.833 240 35 11 153 385 295370153 295369918 1.040000e-40 178.0
23 TraesCS3A01G002200 chr4A 82.047 557 82 9 383 922 480118076 480118631 3.310000e-125 459.0
24 TraesCS3A01G002200 chr1D 81.183 558 68 13 383 922 15113155 15113693 7.270000e-112 414.0
25 TraesCS3A01G002200 chr2B 87.786 262 27 4 1715 1975 464032786 464032529 5.900000e-78 302.0
26 TraesCS3A01G002200 chr4D 83.265 245 34 7 947 1187 284048782 284048541 6.120000e-53 219.0
27 TraesCS3A01G002200 chr2D 82.949 217 32 5 171 385 342110969 342110756 1.330000e-44 191.0
28 TraesCS3A01G002200 chr6A 82.569 218 31 6 171 385 111793979 111793766 6.200000e-43 185.0
29 TraesCS3A01G002200 chr7D 80.085 236 43 4 152 385 475013581 475013348 4.830000e-39 172.0
30 TraesCS3A01G002200 chr3D 80.258 233 41 5 156 385 189429569 189429339 1.740000e-38 171.0
31 TraesCS3A01G002200 chr5A 80.556 216 34 7 171 382 471833267 471833478 3.760000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G002200 chr3A 1387811 1391448 3637 True 6719.00 6719 100.00000 1 3638 1 chr3A.!!$R1 3637
1 TraesCS3A01G002200 chr3A 692028829 692029384 555 False 525.00 525 84.22900 383 922 1 chr3A.!!$F1 539
2 TraesCS3A01G002200 chr3A 267384092 267384644 552 True 466.00 466 82.40600 383 922 1 chr3A.!!$R2 539
3 TraesCS3A01G002200 chr3B 1612145 1615559 3414 True 969.75 2139 91.70975 1 3063 4 chr3B.!!$R2 3062
4 TraesCS3A01G002200 chr3B 786001182 786001705 523 False 508.00 508 84.76200 416 922 1 chr3B.!!$F1 506
5 TraesCS3A01G002200 chr6B 720754665 720755171 506 False 769.00 769 93.95700 3127 3638 1 chr6B.!!$F2 511
6 TraesCS3A01G002200 chr4B 95212304 95212859 555 True 536.00 536 84.58800 383 922 1 chr4B.!!$R1 539
7 TraesCS3A01G002200 chr5B 599401688 599402242 554 True 534.00 534 84.56000 383 921 1 chr5B.!!$R1 538
8 TraesCS3A01G002200 chrUn 162320915 162321470 555 False 525.00 525 84.22900 383 922 1 chrUn.!!$F1 539
9 TraesCS3A01G002200 chr2A 744129289 744129844 555 True 525.00 525 84.22900 383 922 1 chr2A.!!$R3 539
10 TraesCS3A01G002200 chr2A 110372981 110373535 554 True 479.00 479 82.76500 383 922 1 chr2A.!!$R1 539
11 TraesCS3A01G002200 chr1B 197867988 197868511 523 True 525.00 525 85.33300 416 922 1 chr1B.!!$R1 506
12 TraesCS3A01G002200 chr1B 345665357 345665912 555 True 525.00 525 84.22900 383 922 1 chr1B.!!$R2 539
13 TraesCS3A01G002200 chr1A 16273766 16274319 553 False 490.00 490 83.12400 383 922 1 chr1A.!!$F1 539
14 TraesCS3A01G002200 chr4A 480118076 480118631 555 False 459.00 459 82.04700 383 922 1 chr4A.!!$F1 539
15 TraesCS3A01G002200 chr1D 15113155 15113693 538 False 414.00 414 81.18300 383 922 1 chr1D.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 699 0.250858 CCACTGCATCCACCAACTCA 60.251 55.0 0.0 0.0 0.0 3.41 F
1082 1103 0.245813 GACGCCCGGTATTATCTCCC 59.754 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1541 1569 0.171231 GAGCCCGAATTGCAAGGTTC 59.829 55.0 4.94 4.39 0.00 3.62 R
3075 3493 0.178961 GCCAACAGGTTCTTCCCCTT 60.179 55.0 0.00 0.00 36.75 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.938322 TGTGTGTTCTTGTTGTTTTCTCTC 58.062 37.500 0.00 0.00 0.00 3.20
27 28 6.876789 TGTGTGTTCTTGTTGTTTTCTCTCTA 59.123 34.615 0.00 0.00 0.00 2.43
28 29 7.389330 TGTGTGTTCTTGTTGTTTTCTCTCTAA 59.611 33.333 0.00 0.00 0.00 2.10
29 30 8.398665 GTGTGTTCTTGTTGTTTTCTCTCTAAT 58.601 33.333 0.00 0.00 0.00 1.73
59 60 7.159322 TCTCAAGAAGACGGAATATATAGGC 57.841 40.000 0.00 0.00 0.00 3.93
78 79 2.427453 GGCTTGAGATTAGGTCAGACGA 59.573 50.000 0.00 0.00 0.00 4.20
109 110 3.052082 CCACAAGCTCACAGGGCG 61.052 66.667 0.00 0.00 34.52 6.13
141 143 1.741770 GGCACGCTACCCAGACTTG 60.742 63.158 0.00 0.00 0.00 3.16
146 148 1.377333 GCTACCCAGACTTGTGGCC 60.377 63.158 0.00 0.00 36.11 5.36
149 151 2.124507 TACCCAGACTTGTGGCCTGC 62.125 60.000 3.32 0.00 36.11 4.85
164 166 3.635268 CTGCTGGTGGCCCTTCTCC 62.635 68.421 0.00 0.00 40.92 3.71
176 178 1.545651 CCCTTCTCCGGCAGTTCTTTT 60.546 52.381 0.00 0.00 0.00 2.27
179 181 2.930826 TCTCCGGCAGTTCTTTTCTT 57.069 45.000 0.00 0.00 0.00 2.52
180 182 2.767505 TCTCCGGCAGTTCTTTTCTTC 58.232 47.619 0.00 0.00 0.00 2.87
188 190 6.438763 CGGCAGTTCTTTTCTTCAGTATTTT 58.561 36.000 0.00 0.00 0.00 1.82
190 192 8.073768 CGGCAGTTCTTTTCTTCAGTATTTTTA 58.926 33.333 0.00 0.00 0.00 1.52
228 230 8.944212 AAATAATTTCTGTAAAGTTTCGTCCG 57.056 30.769 0.00 0.00 0.00 4.79
229 231 7.894376 ATAATTTCTGTAAAGTTTCGTCCGA 57.106 32.000 0.00 0.00 0.00 4.55
233 235 4.240096 TCTGTAAAGTTTCGTCCGATTCC 58.760 43.478 0.00 0.00 0.00 3.01
239 241 1.652619 GTTTCGTCCGATTCCGAGAAC 59.347 52.381 0.00 0.00 38.22 3.01
240 242 0.883153 TTCGTCCGATTCCGAGAACA 59.117 50.000 0.00 0.00 38.22 3.18
243 245 1.852895 CGTCCGATTCCGAGAACATTC 59.147 52.381 0.00 0.00 38.22 2.67
253 255 3.686241 TCCGAGAACATTCATTTCTGCAG 59.314 43.478 7.63 7.63 33.30 4.41
261 263 9.635520 AGAACATTCATTTCTGCAGAAAAATAG 57.364 29.630 37.81 27.99 45.81 1.73
277 279 9.512435 CAGAAAAATAGCACCAAGATTATTCTG 57.488 33.333 0.00 0.00 34.80 3.02
290 292 6.560253 AGATTATTCTGCTGAAAACAACGT 57.440 33.333 10.27 0.00 35.63 3.99
294 296 3.673746 TCTGCTGAAAACAACGTCAAG 57.326 42.857 0.00 0.00 0.00 3.02
297 299 1.202245 GCTGAAAACAACGTCAAGCCA 60.202 47.619 0.00 0.00 0.00 4.75
298 300 2.719798 CTGAAAACAACGTCAAGCCAG 58.280 47.619 0.00 0.00 0.00 4.85
299 301 1.403679 TGAAAACAACGTCAAGCCAGG 59.596 47.619 0.00 0.00 0.00 4.45
307 309 2.490991 ACGTCAAGCCAGGTTAGTTTC 58.509 47.619 0.00 0.00 0.00 2.78
320 322 7.577426 GCCAGGTTAGTTTCATTCAAATCATGA 60.577 37.037 0.00 0.00 35.85 3.07
321 323 7.756722 CCAGGTTAGTTTCATTCAAATCATGAC 59.243 37.037 0.00 0.00 37.92 3.06
323 325 9.028284 AGGTTAGTTTCATTCAAATCATGACAT 57.972 29.630 0.00 0.00 37.92 3.06
376 379 7.215719 TGGATAAGTAGATATGTTGGAGACG 57.784 40.000 0.00 0.00 0.00 4.18
398 401 0.329261 TCAGTTCCCATGCCCAAGAG 59.671 55.000 0.00 0.00 0.00 2.85
414 417 3.569200 GAGGCAAGGCGGGGTCTTT 62.569 63.158 0.00 0.00 0.00 2.52
419 422 0.323629 CAAGGCGGGGTCTTTAGTGA 59.676 55.000 0.00 0.00 0.00 3.41
442 445 1.462731 TTGTTGGAGCATGGTGGCAC 61.463 55.000 9.70 9.70 35.83 5.01
448 451 1.474320 GGAGCATGGTGGCACGTATTA 60.474 52.381 12.17 0.00 35.83 0.98
492 512 3.189287 ACATTTGCATCCTCGACAAGAAC 59.811 43.478 0.00 0.00 0.00 3.01
499 519 2.739292 TCCTCGACAAGAACAACTTCG 58.261 47.619 0.00 0.00 36.61 3.79
505 525 4.569162 TCGACAAGAACAACTTCGTGAAAT 59.431 37.500 3.81 0.00 37.92 2.17
552 572 2.848694 ACCTGAGATGATGGGTGAACAT 59.151 45.455 0.00 0.00 0.00 2.71
574 594 3.953712 TTCGTTCTCAACTGGATGCTA 57.046 42.857 0.00 0.00 0.00 3.49
639 659 2.103094 TGAAGAACACACCTGGACTCAG 59.897 50.000 0.00 0.00 40.59 3.35
675 695 0.994247 ATCTCCACTGCATCCACCAA 59.006 50.000 0.00 0.00 0.00 3.67
679 699 0.250858 CCACTGCATCCACCAACTCA 60.251 55.000 0.00 0.00 0.00 3.41
722 742 7.753132 TGATGTAATGCAAACCGAAAAGAATAC 59.247 33.333 0.00 0.00 0.00 1.89
726 746 3.231160 GCAAACCGAAAAGAATACCACG 58.769 45.455 0.00 0.00 0.00 4.94
790 810 9.084533 AGACAAAGGATAATACTAAGGCTAGAG 57.915 37.037 0.00 0.00 0.00 2.43
797 817 7.762159 GGATAATACTAAGGCTAGAGTTGATGC 59.238 40.741 7.24 2.07 0.00 3.91
852 872 1.235281 GGCAACCCGAGGACAGAAAC 61.235 60.000 0.00 0.00 0.00 2.78
910 930 6.794534 ACAAGGGAACAAAAGAAGGAGATAT 58.205 36.000 0.00 0.00 0.00 1.63
931 951 7.606839 AGATATTCATGTGATTCCATGTAGCTG 59.393 37.037 0.00 0.00 42.29 4.24
949 970 2.029828 GCTGACTAGGATCCATGTACCG 60.030 54.545 15.82 5.25 0.00 4.02
991 1012 0.252927 AAACTGAGGGGCCTAGCTCT 60.253 55.000 0.84 0.00 0.00 4.09
1032 1053 7.406031 TCCCTTGTTAGATACTTGTACTCAG 57.594 40.000 0.00 0.00 0.00 3.35
1041 1062 7.852971 AGATACTTGTACTCAGTACTCACTC 57.147 40.000 16.09 6.74 39.49 3.51
1060 1081 1.130955 CCAACGCAATGAACACAAGC 58.869 50.000 0.00 0.00 0.00 4.01
1067 1088 0.593128 AATGAACACAAGCAGGACGC 59.407 50.000 0.00 0.00 42.91 5.19
1068 1089 1.237285 ATGAACACAAGCAGGACGCC 61.237 55.000 0.00 0.00 44.04 5.68
1069 1090 2.594592 AACACAAGCAGGACGCCC 60.595 61.111 0.00 0.00 44.04 6.13
1082 1103 0.245813 GACGCCCGGTATTATCTCCC 59.754 60.000 0.00 0.00 0.00 4.30
1084 1105 1.189524 CGCCCGGTATTATCTCCCCA 61.190 60.000 0.00 0.00 0.00 4.96
1114 1136 5.123979 CCTGAACCTAGGTAAATTCTTGTGC 59.876 44.000 16.67 0.00 32.99 4.57
1115 1137 5.007682 TGAACCTAGGTAAATTCTTGTGCC 58.992 41.667 16.67 0.00 0.00 5.01
1143 1165 2.495270 ACCATCGCTCCTAGATGCATAG 59.505 50.000 0.00 0.00 42.92 2.23
1167 1189 3.734344 AGGATCCCCTACCTCAAGATT 57.266 47.619 8.55 0.00 42.15 2.40
1170 1192 3.481453 GATCCCCTACCTCAAGATTTGC 58.519 50.000 0.00 0.00 0.00 3.68
1172 1194 1.284785 CCCCTACCTCAAGATTTGCCA 59.715 52.381 0.00 0.00 0.00 4.92
1198 1220 2.535485 ATTCCGTCCGAATGGCAGCA 62.535 55.000 0.00 0.00 39.84 4.41
1226 1248 0.675633 CCAAGTTGCCTGACCCTTTG 59.324 55.000 0.00 0.00 0.00 2.77
1236 1258 0.752054 TGACCCTTTGCTTTGCTTGG 59.248 50.000 0.00 0.00 0.00 3.61
1239 1261 1.067916 CCTTTGCTTTGCTTGGCGT 59.932 52.632 0.00 0.00 0.00 5.68
1273 1295 5.792741 CAATTGGGAGCTATTTTTGTCCAA 58.207 37.500 0.00 0.00 37.24 3.53
1274 1296 6.229733 CAATTGGGAGCTATTTTTGTCCAAA 58.770 36.000 0.00 0.00 36.55 3.28
1284 1306 8.306761 AGCTATTTTTGTCCAAATTTGAGTAGG 58.693 33.333 19.86 2.35 0.00 3.18
1294 1316 6.657541 TCCAAATTTGAGTAGGCGAAAATACT 59.342 34.615 19.86 0.00 34.96 2.12
1410 1434 4.583871 AGGAAATCTAGCAAGGTTGACAG 58.416 43.478 0.00 0.00 0.00 3.51
1453 1477 9.533253 GGGGACATAATTGAAATTTTATCTGTG 57.467 33.333 0.00 0.00 0.00 3.66
1485 1509 7.849804 ACTTATCATTGGTGTAAGATGTGTC 57.150 36.000 9.70 0.00 31.55 3.67
1541 1569 5.326200 AGGATGACTTGGTACTTTCTACG 57.674 43.478 0.00 0.00 0.00 3.51
1546 1574 4.586001 TGACTTGGTACTTTCTACGAACCT 59.414 41.667 0.00 0.00 0.00 3.50
1554 1582 5.358298 ACTTTCTACGAACCTTGCAATTC 57.642 39.130 0.00 0.56 0.00 2.17
1565 1593 1.398390 CTTGCAATTCGGGCTCACTAC 59.602 52.381 0.00 0.00 0.00 2.73
1610 1638 3.767309 ACCATTAGGGAGAGTGAGAGT 57.233 47.619 0.00 0.00 41.15 3.24
1624 1652 6.556212 AGAGTGAGAGTATGTAATGTGAACG 58.444 40.000 0.00 0.00 0.00 3.95
1625 1653 5.651530 AGTGAGAGTATGTAATGTGAACGG 58.348 41.667 0.00 0.00 0.00 4.44
1635 1663 6.236017 TGTAATGTGAACGGAAGCTTTAAG 57.764 37.500 0.00 0.00 0.00 1.85
1639 1667 4.695396 TGTGAACGGAAGCTTTAAGTACA 58.305 39.130 0.00 1.39 0.00 2.90
1839 1924 8.171164 AGTTTATTTAGCTTTGCAGTCTTTCT 57.829 30.769 0.00 0.00 0.00 2.52
1853 1938 9.733556 TTGCAGTCTTTCTTTACCTCATATTAA 57.266 29.630 0.00 0.00 0.00 1.40
1865 1950 9.582648 TTTACCTCATATTAATTTAGCTTCCCC 57.417 33.333 0.00 0.00 0.00 4.81
1871 1956 8.626526 TCATATTAATTTAGCTTCCCCGTTTTC 58.373 33.333 0.00 0.00 0.00 2.29
1872 1957 5.648178 TTAATTTAGCTTCCCCGTTTTCC 57.352 39.130 0.00 0.00 0.00 3.13
1873 1958 2.660670 TTTAGCTTCCCCGTTTTCCA 57.339 45.000 0.00 0.00 0.00 3.53
1874 1959 2.194201 TTAGCTTCCCCGTTTTCCAG 57.806 50.000 0.00 0.00 0.00 3.86
1937 2055 3.134574 ACGCCATAAGAACCTCACAAA 57.865 42.857 0.00 0.00 0.00 2.83
1944 2062 6.472887 CCATAAGAACCTCACAAAGTTAGGA 58.527 40.000 4.50 0.00 31.91 2.94
1953 2071 2.884639 CACAAAGTTAGGACACCCAAGG 59.115 50.000 0.00 0.00 33.88 3.61
2019 2137 8.928270 ATTAAACTACATTCTCCTGTTCTACG 57.072 34.615 0.00 0.00 0.00 3.51
2028 2146 2.761208 CTCCTGTTCTACGATGGAACCT 59.239 50.000 13.70 0.00 41.42 3.50
2030 2148 2.271800 CTGTTCTACGATGGAACCTGC 58.728 52.381 13.70 0.00 41.42 4.85
2038 2156 0.537188 GATGGAACCTGCGAGGAAGA 59.463 55.000 8.91 0.00 37.67 2.87
2051 2169 0.251341 AGGAAGACCATTGTGGGTGC 60.251 55.000 0.52 0.00 43.37 5.01
2257 2375 6.648879 TTGTTACAAGGAGATTTGGGAAAG 57.351 37.500 0.00 0.00 32.32 2.62
2276 2394 2.208872 AGTTGCATGGGTAGGGAGAAT 58.791 47.619 0.00 0.00 0.00 2.40
2279 2397 2.421725 TGCATGGGTAGGGAGAATGAT 58.578 47.619 0.00 0.00 0.00 2.45
2448 2566 6.367421 TCGTTTACAGTGCATTGATTGTAAC 58.633 36.000 16.98 10.32 36.18 2.50
2457 2575 4.031028 GCATTGATTGTAACATGCGACTC 58.969 43.478 0.00 0.00 0.00 3.36
2461 2579 2.380084 TTGTAACATGCGACTCTCCC 57.620 50.000 0.00 0.00 0.00 4.30
2484 2602 7.284034 TCCCTCCAAGTTACTACTATTTCGTAG 59.716 40.741 0.00 0.00 41.98 3.51
2495 2613 5.290493 ACTATTTCGTAGATGATTGGGCA 57.710 39.130 0.00 0.00 35.04 5.36
2496 2614 5.300752 ACTATTTCGTAGATGATTGGGCAG 58.699 41.667 0.00 0.00 35.04 4.85
2497 2615 1.953559 TTCGTAGATGATTGGGCAGC 58.046 50.000 0.00 0.00 35.04 5.25
2499 2617 1.209261 TCGTAGATGATTGGGCAGCAA 59.791 47.619 0.00 0.00 0.00 3.91
2503 2621 1.754803 AGATGATTGGGCAGCAACATG 59.245 47.619 0.00 0.00 0.00 3.21
2504 2622 0.177141 ATGATTGGGCAGCAACATGC 59.823 50.000 0.00 0.00 45.46 4.06
2517 2635 4.802876 GCAACATGCTCTAGTACCAATC 57.197 45.455 0.00 0.00 40.96 2.67
2519 2637 4.272018 GCAACATGCTCTAGTACCAATCTG 59.728 45.833 0.00 0.00 40.96 2.90
2520 2638 4.679373 ACATGCTCTAGTACCAATCTGG 57.321 45.455 0.00 0.00 45.02 3.86
2521 2639 3.389329 ACATGCTCTAGTACCAATCTGGG 59.611 47.826 0.00 0.00 43.37 4.45
2522 2640 3.116096 TGCTCTAGTACCAATCTGGGT 57.884 47.619 0.00 0.00 43.37 4.51
2539 2674 6.633500 TCTGGGTGATTGTCTAAAACTTTG 57.367 37.500 0.00 0.00 0.00 2.77
2541 2676 7.284074 TCTGGGTGATTGTCTAAAACTTTGTA 58.716 34.615 0.00 0.00 0.00 2.41
2658 2794 4.756084 ATTTTTGACACTCTGCTAGCAC 57.244 40.909 14.93 3.28 0.00 4.40
2707 2843 8.699130 TGTCTTAATTTACTAGGCCTAGTTACC 58.301 37.037 42.51 21.51 43.35 2.85
2708 2844 8.699130 GTCTTAATTTACTAGGCCTAGTTACCA 58.301 37.037 42.51 26.39 43.35 3.25
2709 2845 8.921205 TCTTAATTTACTAGGCCTAGTTACCAG 58.079 37.037 42.51 29.54 43.35 4.00
2710 2846 8.613922 TTAATTTACTAGGCCTAGTTACCAGT 57.386 34.615 42.51 26.49 43.35 4.00
2712 2848 7.594351 ATTTACTAGGCCTAGTTACCAGTAC 57.406 40.000 42.51 0.00 43.35 2.73
2713 2849 3.549794 ACTAGGCCTAGTTACCAGTACG 58.450 50.000 35.35 12.13 43.35 3.67
2718 3133 3.633986 GGCCTAGTTACCAGTACGTACAT 59.366 47.826 26.55 14.21 0.00 2.29
2724 3139 6.382869 AGTTACCAGTACGTACATATCACC 57.617 41.667 26.55 9.29 0.00 4.02
2740 3155 1.000843 TCACCGAGTGTCCACAAGATG 59.999 52.381 0.00 0.00 34.79 2.90
2756 3171 5.687285 CACAAGATGGTGCTCAAAAACTAAC 59.313 40.000 0.00 0.00 31.10 2.34
2769 3184 2.165319 AACTAACCGAGGCACAAGAC 57.835 50.000 0.00 0.00 0.00 3.01
2818 3236 5.240844 GTGTAAAAGTTGAATAGTGCCAGGT 59.759 40.000 0.00 0.00 0.00 4.00
2836 3254 5.755849 CCAGGTGAGGTCTATGGTTTTAAT 58.244 41.667 0.00 0.00 0.00 1.40
2839 3257 5.253096 AGGTGAGGTCTATGGTTTTAATGGT 59.747 40.000 0.00 0.00 0.00 3.55
2858 3276 3.581332 TGGTCCTCTTAAGGTTCGATTGT 59.419 43.478 1.85 0.00 43.82 2.71
2860 3278 3.933332 GTCCTCTTAAGGTTCGATTGTGG 59.067 47.826 1.85 0.00 43.82 4.17
2865 3283 5.856156 TCTTAAGGTTCGATTGTGGTGTAA 58.144 37.500 1.85 0.00 0.00 2.41
2879 3297 4.410883 TGTGGTGTAAGGGAAGAAGAAGAA 59.589 41.667 0.00 0.00 0.00 2.52
2880 3298 4.998033 GTGGTGTAAGGGAAGAAGAAGAAG 59.002 45.833 0.00 0.00 0.00 2.85
2881 3299 4.905456 TGGTGTAAGGGAAGAAGAAGAAGA 59.095 41.667 0.00 0.00 0.00 2.87
2882 3300 5.368523 TGGTGTAAGGGAAGAAGAAGAAGAA 59.631 40.000 0.00 0.00 0.00 2.52
2883 3301 5.935206 GGTGTAAGGGAAGAAGAAGAAGAAG 59.065 44.000 0.00 0.00 0.00 2.85
2884 3302 6.239629 GGTGTAAGGGAAGAAGAAGAAGAAGA 60.240 42.308 0.00 0.00 0.00 2.87
2885 3303 7.217906 GTGTAAGGGAAGAAGAAGAAGAAGAA 58.782 38.462 0.00 0.00 0.00 2.52
2886 3304 7.386573 GTGTAAGGGAAGAAGAAGAAGAAGAAG 59.613 40.741 0.00 0.00 0.00 2.85
2887 3305 6.755542 AAGGGAAGAAGAAGAAGAAGAAGA 57.244 37.500 0.00 0.00 0.00 2.87
2888 3306 6.755542 AGGGAAGAAGAAGAAGAAGAAGAA 57.244 37.500 0.00 0.00 0.00 2.52
2889 3307 6.768483 AGGGAAGAAGAAGAAGAAGAAGAAG 58.232 40.000 0.00 0.00 0.00 2.85
2890 3308 6.556874 AGGGAAGAAGAAGAAGAAGAAGAAGA 59.443 38.462 0.00 0.00 0.00 2.87
2891 3309 7.071824 AGGGAAGAAGAAGAAGAAGAAGAAGAA 59.928 37.037 0.00 0.00 0.00 2.52
2892 3310 7.387673 GGGAAGAAGAAGAAGAAGAAGAAGAAG 59.612 40.741 0.00 0.00 0.00 2.85
2893 3311 8.147704 GGAAGAAGAAGAAGAAGAAGAAGAAGA 58.852 37.037 0.00 0.00 0.00 2.87
2894 3312 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2895 3313 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2896 3314 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2897 3315 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2898 3316 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2899 3317 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2900 3318 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2901 3319 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2902 3320 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2903 3321 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2904 3322 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2905 3323 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2906 3324 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2907 3325 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2908 3326 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2909 3327 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2910 3328 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2911 3329 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2912 3330 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2913 3331 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2914 3332 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2915 3333 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2989 3407 5.405935 AATAGTCATGGGGAAAAACTTGC 57.594 39.130 0.00 0.00 0.00 4.01
2998 3416 2.127251 GGAAAAACTTGCGAGCAAAGG 58.873 47.619 11.83 3.96 35.33 3.11
3015 3433 5.538433 AGCAAAGGCAAAAAGTATCAAGGTA 59.462 36.000 0.00 0.00 44.61 3.08
3044 3462 4.582869 TCTGCAGCAATAACAGAATCAGT 58.417 39.130 9.47 0.00 37.49 3.41
3084 3502 8.491045 AAAAACATTAGAATTCAAGGGGAAGA 57.509 30.769 8.44 0.00 39.30 2.87
3085 3503 8.491045 AAAACATTAGAATTCAAGGGGAAGAA 57.509 30.769 8.44 0.00 39.30 2.52
3086 3504 7.468141 AACATTAGAATTCAAGGGGAAGAAC 57.532 36.000 8.44 0.00 39.30 3.01
3087 3505 5.952347 ACATTAGAATTCAAGGGGAAGAACC 59.048 40.000 8.44 0.00 39.30 3.62
3088 3506 5.860648 TTAGAATTCAAGGGGAAGAACCT 57.139 39.130 8.44 0.00 39.30 3.50
3089 3507 4.039603 AGAATTCAAGGGGAAGAACCTG 57.960 45.455 8.44 0.00 39.30 4.00
3090 3508 3.399305 AGAATTCAAGGGGAAGAACCTGT 59.601 43.478 8.44 0.00 39.30 4.00
3091 3509 3.903530 ATTCAAGGGGAAGAACCTGTT 57.096 42.857 0.00 0.00 39.30 3.16
3092 3510 2.656947 TCAAGGGGAAGAACCTGTTG 57.343 50.000 0.00 0.00 38.63 3.33
3093 3511 1.144913 TCAAGGGGAAGAACCTGTTGG 59.855 52.381 0.00 0.00 38.63 3.77
3094 3512 0.178961 AAGGGGAAGAACCTGTTGGC 60.179 55.000 0.00 0.00 38.63 4.52
3095 3513 1.068352 AGGGGAAGAACCTGTTGGCT 61.068 55.000 0.00 0.00 36.85 4.75
3096 3514 0.609406 GGGGAAGAACCTGTTGGCTC 60.609 60.000 0.00 0.00 38.98 4.70
3097 3515 0.402121 GGGAAGAACCTGTTGGCTCT 59.598 55.000 0.00 0.00 40.26 4.09
3098 3516 1.528129 GGAAGAACCTGTTGGCTCTG 58.472 55.000 0.00 0.00 37.78 3.35
3099 3517 0.877743 GAAGAACCTGTTGGCTCTGC 59.122 55.000 0.00 0.00 37.78 4.26
3100 3518 0.475906 AAGAACCTGTTGGCTCTGCT 59.524 50.000 0.00 0.00 37.78 4.24
3101 3519 0.475906 AGAACCTGTTGGCTCTGCTT 59.524 50.000 0.00 0.00 37.39 3.91
3102 3520 1.133668 AGAACCTGTTGGCTCTGCTTT 60.134 47.619 0.00 0.00 37.39 3.51
3103 3521 1.268079 GAACCTGTTGGCTCTGCTTTC 59.732 52.381 0.00 0.00 36.63 2.62
3104 3522 0.538287 ACCTGTTGGCTCTGCTTTCC 60.538 55.000 0.00 0.00 36.63 3.13
3105 3523 0.251077 CCTGTTGGCTCTGCTTTCCT 60.251 55.000 0.00 0.00 0.00 3.36
3106 3524 1.163554 CTGTTGGCTCTGCTTTCCTC 58.836 55.000 0.00 0.00 0.00 3.71
3107 3525 0.767375 TGTTGGCTCTGCTTTCCTCT 59.233 50.000 0.00 0.00 0.00 3.69
3108 3526 1.143684 TGTTGGCTCTGCTTTCCTCTT 59.856 47.619 0.00 0.00 0.00 2.85
3109 3527 2.234143 GTTGGCTCTGCTTTCCTCTTT 58.766 47.619 0.00 0.00 0.00 2.52
3110 3528 3.181445 TGTTGGCTCTGCTTTCCTCTTTA 60.181 43.478 0.00 0.00 0.00 1.85
3111 3529 3.059352 TGGCTCTGCTTTCCTCTTTAC 57.941 47.619 0.00 0.00 0.00 2.01
3112 3530 2.639839 TGGCTCTGCTTTCCTCTTTACT 59.360 45.455 0.00 0.00 0.00 2.24
3113 3531 3.266636 GGCTCTGCTTTCCTCTTTACTC 58.733 50.000 0.00 0.00 0.00 2.59
3114 3532 3.055458 GGCTCTGCTTTCCTCTTTACTCT 60.055 47.826 0.00 0.00 0.00 3.24
3115 3533 4.564613 GGCTCTGCTTTCCTCTTTACTCTT 60.565 45.833 0.00 0.00 0.00 2.85
3116 3534 5.000591 GCTCTGCTTTCCTCTTTACTCTTT 58.999 41.667 0.00 0.00 0.00 2.52
3117 3535 5.106752 GCTCTGCTTTCCTCTTTACTCTTTG 60.107 44.000 0.00 0.00 0.00 2.77
3118 3536 4.757149 TCTGCTTTCCTCTTTACTCTTTGC 59.243 41.667 0.00 0.00 0.00 3.68
3119 3537 3.498397 TGCTTTCCTCTTTACTCTTTGCG 59.502 43.478 0.00 0.00 0.00 4.85
3120 3538 3.746492 GCTTTCCTCTTTACTCTTTGCGA 59.254 43.478 0.00 0.00 0.00 5.10
3121 3539 4.143009 GCTTTCCTCTTTACTCTTTGCGAG 60.143 45.833 0.00 0.00 45.56 5.03
3122 3540 2.960819 TCCTCTTTACTCTTTGCGAGC 58.039 47.619 0.00 0.00 43.85 5.03
3123 3541 1.656095 CCTCTTTACTCTTTGCGAGCG 59.344 52.381 0.00 0.00 43.85 5.03
3124 3542 1.656095 CTCTTTACTCTTTGCGAGCGG 59.344 52.381 0.00 0.00 43.85 5.52
3125 3543 1.271379 TCTTTACTCTTTGCGAGCGGA 59.729 47.619 0.00 0.00 43.85 5.54
3141 3559 3.264947 AGCGGAACTTTAATACGAACCC 58.735 45.455 0.00 0.00 0.00 4.11
3144 3562 4.680440 GCGGAACTTTAATACGAACCCCTA 60.680 45.833 0.00 0.00 0.00 3.53
3198 3616 4.562757 GGCTGTAGTGGAAACAGATGTGTA 60.563 45.833 7.39 0.00 45.89 2.90
3257 3675 0.102481 ACATAAGGCCGCTGTAGACG 59.898 55.000 0.00 0.00 0.00 4.18
3270 3688 0.308376 GTAGACGCCGCTTCTCCTAG 59.692 60.000 2.07 0.00 0.00 3.02
3274 3692 2.470362 CGCCGCTTCTCCTAGTCGA 61.470 63.158 0.00 0.00 0.00 4.20
3276 3694 1.352404 CCGCTTCTCCTAGTCGACG 59.648 63.158 10.46 0.00 0.00 5.12
3281 3699 2.553086 CTTCTCCTAGTCGACGCTACT 58.447 52.381 10.46 0.00 0.00 2.57
3423 3841 5.793026 TCATTTTTGTGGTGTTTTGAAGC 57.207 34.783 0.00 0.00 0.00 3.86
3426 3844 3.791973 TTTGTGGTGTTTTGAAGCGAT 57.208 38.095 0.00 0.00 0.00 4.58
3467 3885 3.074836 TCCTTTCCTTGGTTTATTCGGGT 59.925 43.478 0.00 0.00 0.00 5.28
3468 3886 3.830178 CCTTTCCTTGGTTTATTCGGGTT 59.170 43.478 0.00 0.00 0.00 4.11
3564 3983 8.418662 GGTTTCCTGTATTTCTTTACCAGTTTT 58.581 33.333 0.00 0.00 0.00 2.43
3565 3984 9.459640 GTTTCCTGTATTTCTTTACCAGTTTTC 57.540 33.333 0.00 0.00 0.00 2.29
3567 3986 6.717997 TCCTGTATTTCTTTACCAGTTTTCCC 59.282 38.462 0.00 0.00 0.00 3.97
3569 3988 7.232737 CCTGTATTTCTTTACCAGTTTTCCCTT 59.767 37.037 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.948886 TCTCAAGCCTATATATTCCGTCTTCT 59.051 38.462 0.00 0.00 0.00 2.85
47 48 8.982723 TGACCTAATCTCAAGCCTATATATTCC 58.017 37.037 0.00 0.00 0.00 3.01
59 60 4.677584 CCTTCGTCTGACCTAATCTCAAG 58.322 47.826 1.55 0.00 0.00 3.02
78 79 2.430367 GTGGGTTCCACGAGCCTT 59.570 61.111 1.01 0.00 44.95 4.35
89 90 1.151450 CCCTGTGAGCTTGTGGGTT 59.849 57.895 6.81 0.00 33.49 4.11
128 130 1.377333 GGCCACAAGTCTGGGTAGC 60.377 63.158 0.00 0.00 0.00 3.58
131 133 2.839098 CAGGCCACAAGTCTGGGT 59.161 61.111 5.01 0.00 0.00 4.51
136 138 2.113986 ACCAGCAGGCCACAAGTC 59.886 61.111 5.01 0.00 39.06 3.01
137 139 2.203394 CACCAGCAGGCCACAAGT 60.203 61.111 5.01 0.00 39.06 3.16
146 148 2.045536 GAGAAGGGCCACCAGCAG 60.046 66.667 6.18 0.00 46.50 4.24
149 151 4.101448 CCGGAGAAGGGCCACCAG 62.101 72.222 6.18 0.84 40.13 4.00
164 166 5.613358 AATACTGAAGAAAAGAACTGCCG 57.387 39.130 0.00 0.00 0.00 5.69
202 204 9.389570 CGGACGAAACTTTACAGAAATTATTTT 57.610 29.630 0.00 0.00 0.00 1.82
206 208 7.894376 ATCGGACGAAACTTTACAGAAATTA 57.106 32.000 0.00 0.00 0.00 1.40
207 209 6.796705 ATCGGACGAAACTTTACAGAAATT 57.203 33.333 0.00 0.00 0.00 1.82
210 212 4.687483 GGAATCGGACGAAACTTTACAGAA 59.313 41.667 0.00 0.00 0.00 3.02
219 221 1.652619 GTTCTCGGAATCGGACGAAAC 59.347 52.381 0.00 0.00 38.79 2.78
224 226 2.888594 TGAATGTTCTCGGAATCGGAC 58.111 47.619 0.00 0.00 36.95 4.79
228 230 5.163723 TGCAGAAATGAATGTTCTCGGAATC 60.164 40.000 0.00 0.00 32.96 2.52
229 231 4.701651 TGCAGAAATGAATGTTCTCGGAAT 59.298 37.500 0.00 0.00 32.96 3.01
233 235 4.934075 TCTGCAGAAATGAATGTTCTCG 57.066 40.909 15.67 0.00 32.96 4.04
239 241 7.201496 GGTGCTATTTTTCTGCAGAAATGAATG 60.201 37.037 35.66 25.40 42.83 2.67
240 242 6.815142 GGTGCTATTTTTCTGCAGAAATGAAT 59.185 34.615 35.66 31.72 42.83 2.57
243 245 5.472148 TGGTGCTATTTTTCTGCAGAAATG 58.528 37.500 35.66 26.01 42.83 2.32
253 255 8.193438 AGCAGAATAATCTTGGTGCTATTTTTC 58.807 33.333 0.00 0.00 31.51 2.29
261 263 4.970662 TTCAGCAGAATAATCTTGGTGC 57.029 40.909 0.00 0.00 34.78 5.01
277 279 1.202245 TGGCTTGACGTTGTTTTCAGC 60.202 47.619 0.00 0.00 0.00 4.26
290 292 4.724399 TGAATGAAACTAACCTGGCTTGA 58.276 39.130 0.00 0.00 0.00 3.02
294 296 6.024552 TGATTTGAATGAAACTAACCTGGC 57.975 37.500 0.00 0.00 0.00 4.85
297 299 8.408043 TGTCATGATTTGAATGAAACTAACCT 57.592 30.769 0.00 0.00 35.87 3.50
298 300 9.643693 AATGTCATGATTTGAATGAAACTAACC 57.356 29.630 0.00 0.00 35.87 2.85
356 359 8.913487 TGATACGTCTCCAACATATCTACTTA 57.087 34.615 0.00 0.00 34.78 2.24
366 369 2.232941 GGGAACTGATACGTCTCCAACA 59.767 50.000 0.00 0.00 0.00 3.33
376 379 2.092429 TCTTGGGCATGGGAACTGATAC 60.092 50.000 0.00 0.00 0.00 2.24
398 401 1.749258 CTAAAGACCCCGCCTTGCC 60.749 63.158 0.00 0.00 0.00 4.52
407 410 3.002965 CCAACAAACGTCACTAAAGACCC 59.997 47.826 0.00 0.00 35.07 4.46
414 417 2.605837 TGCTCCAACAAACGTCACTA 57.394 45.000 0.00 0.00 0.00 2.74
419 422 0.667993 CACCATGCTCCAACAAACGT 59.332 50.000 0.00 0.00 0.00 3.99
442 445 8.162880 GTCTATGGAAATCGAAGCAATAATACG 58.837 37.037 0.00 0.00 0.00 3.06
448 451 5.647658 TGTTGTCTATGGAAATCGAAGCAAT 59.352 36.000 0.00 0.00 0.00 3.56
499 519 4.728608 GTGTTCGACAACTTCACATTTCAC 59.271 41.667 0.00 0.00 33.17 3.18
505 525 3.186909 CTGAGTGTTCGACAACTTCACA 58.813 45.455 0.97 0.00 33.17 3.58
552 572 4.471904 AGCATCCAGTTGAGAACGAATA 57.528 40.909 0.00 0.00 36.23 1.75
574 594 3.437052 GGATGTTTGGGATTAGGCTGGAT 60.437 47.826 0.00 0.00 0.00 3.41
675 695 5.316167 TCAATGTTATGTGGAAGCTTGAGT 58.684 37.500 2.10 0.00 0.00 3.41
679 699 7.701539 TTACATCAATGTTATGTGGAAGCTT 57.298 32.000 0.00 0.00 41.97 3.74
711 731 1.664151 GCCTCCGTGGTATTCTTTTCG 59.336 52.381 0.00 0.00 38.35 3.46
722 742 0.455815 GCTAAAAATGGCCTCCGTGG 59.544 55.000 3.32 0.00 39.35 4.94
726 746 3.524541 CAATGTGCTAAAAATGGCCTCC 58.475 45.455 3.32 0.00 0.00 4.30
790 810 5.239359 TCACATAGCTTCATTGCATCAAC 57.761 39.130 0.00 0.00 34.99 3.18
797 817 8.768955 GTTTAGGTCTATCACATAGCTTCATTG 58.231 37.037 0.00 0.00 32.85 2.82
832 852 1.701031 TTTCTGTCCTCGGGTTGCCA 61.701 55.000 0.00 0.00 0.00 4.92
852 872 1.117150 CCCTTGGCATCCTCCAATTG 58.883 55.000 0.00 0.00 44.39 2.32
931 951 3.757493 CCTACGGTACATGGATCCTAGTC 59.243 52.174 14.23 5.84 0.00 2.59
955 976 7.238933 CCCTCAGTTTATATAAATACAGGGGGA 59.761 40.741 24.74 10.95 35.48 4.81
961 982 7.642094 AGGCCCCTCAGTTTATATAAATACA 57.358 36.000 11.00 0.00 0.00 2.29
965 986 5.850028 AGCTAGGCCCCTCAGTTTATATAAA 59.150 40.000 0.00 3.71 0.00 1.40
1032 1053 2.683968 TCATTGCGTTGGAGTGAGTAC 58.316 47.619 0.00 0.00 0.00 2.73
1041 1062 1.130955 GCTTGTGTTCATTGCGTTGG 58.869 50.000 0.00 0.00 0.00 3.77
1060 1081 0.966920 AGATAATACCGGGCGTCCTG 59.033 55.000 6.32 0.00 0.00 3.86
1067 1088 2.180276 CTCTGGGGAGATAATACCGGG 58.820 57.143 6.32 0.00 41.86 5.73
1068 1089 3.093057 CTCTCTGGGGAGATAATACCGG 58.907 54.545 0.00 0.00 46.14 5.28
1069 1090 2.494073 GCTCTCTGGGGAGATAATACCG 59.506 54.545 1.13 0.00 46.14 4.02
1071 1092 3.513515 CAGGCTCTCTGGGGAGATAATAC 59.486 52.174 1.13 0.00 46.14 1.89
1082 1103 1.118838 CCTAGGTTCAGGCTCTCTGG 58.881 60.000 0.00 0.00 43.53 3.86
1084 1105 3.759815 TTACCTAGGTTCAGGCTCTCT 57.240 47.619 22.11 0.00 39.53 3.10
1092 1113 5.007682 GGCACAAGAATTTACCTAGGTTCA 58.992 41.667 22.11 7.52 0.00 3.18
1143 1165 2.400467 TGAGGTAGGGGATCCTAAGC 57.600 55.000 12.58 7.13 46.39 3.09
1167 1189 1.611491 GGACGGAATCAAAACTGGCAA 59.389 47.619 0.00 0.00 0.00 4.52
1170 1192 1.803334 TCGGACGGAATCAAAACTGG 58.197 50.000 0.00 0.00 0.00 4.00
1172 1194 2.747446 CCATTCGGACGGAATCAAAACT 59.253 45.455 5.33 0.00 43.52 2.66
1215 1237 1.043022 AAGCAAAGCAAAGGGTCAGG 58.957 50.000 0.00 0.00 0.00 3.86
1273 1295 8.106247 TGAAAGTATTTTCGCCTACTCAAATT 57.894 30.769 6.27 0.00 44.55 1.82
1274 1296 7.681939 TGAAAGTATTTTCGCCTACTCAAAT 57.318 32.000 6.27 0.00 44.55 2.32
1394 1418 3.492102 AAAGCTGTCAACCTTGCTAGA 57.508 42.857 0.00 0.00 35.09 2.43
1395 1419 5.886960 AATAAAGCTGTCAACCTTGCTAG 57.113 39.130 0.00 0.00 35.09 3.42
1410 1434 4.021544 TGTCCCCATCAACACAAATAAAGC 60.022 41.667 0.00 0.00 0.00 3.51
1437 1461 9.160496 AGTTTTGCAACACAGATAAAATTTCAA 57.840 25.926 17.49 0.00 35.05 2.69
1449 1473 5.984926 ACCAATGATAAGTTTTGCAACACAG 59.015 36.000 17.49 0.00 35.05 3.66
1453 1477 7.865385 TCTTACACCAATGATAAGTTTTGCAAC 59.135 33.333 0.00 0.00 0.00 4.17
1485 1509 2.563179 CGGTATGGATCCTTGGAGGTAG 59.437 54.545 14.23 0.00 36.53 3.18
1524 1548 5.131594 AGGTTCGTAGAAAGTACCAAGTC 57.868 43.478 0.00 0.00 45.90 3.01
1530 1558 5.857822 ATTGCAAGGTTCGTAGAAAGTAC 57.142 39.130 4.94 0.00 45.90 2.73
1531 1559 5.119588 CGAATTGCAAGGTTCGTAGAAAGTA 59.880 40.000 21.42 0.00 45.90 2.24
1532 1560 4.084013 CGAATTGCAAGGTTCGTAGAAAGT 60.084 41.667 21.42 0.00 45.90 2.66
1541 1569 0.171231 GAGCCCGAATTGCAAGGTTC 59.829 55.000 4.94 4.39 0.00 3.62
1546 1574 1.448985 GTAGTGAGCCCGAATTGCAA 58.551 50.000 0.00 0.00 0.00 4.08
1565 1593 3.312421 CAGGTGATATAACAAAGGCACGG 59.688 47.826 0.00 0.00 0.00 4.94
1610 1638 7.604927 ACTTAAAGCTTCCGTTCACATTACATA 59.395 33.333 0.00 0.00 0.00 2.29
1624 1652 8.827677 CCAACATACTATGTACTTAAAGCTTCC 58.172 37.037 0.00 0.00 44.07 3.46
1625 1653 9.379791 ACCAACATACTATGTACTTAAAGCTTC 57.620 33.333 0.00 0.00 44.07 3.86
1635 1663 8.788325 AAGAAGGAAACCAACATACTATGTAC 57.212 34.615 1.98 0.00 44.07 2.90
1639 1667 8.960591 CATGAAAGAAGGAAACCAACATACTAT 58.039 33.333 0.00 0.00 0.00 2.12
1680 1765 9.674824 GAATCTTCATATGGCATCAAAACTAAG 57.325 33.333 1.65 0.15 0.00 2.18
1709 1794 5.308976 TGCACATGGATAGGTGAATATGT 57.691 39.130 0.00 0.00 40.90 2.29
1713 1798 4.603131 AGTTTGCACATGGATAGGTGAAT 58.397 39.130 0.00 0.00 40.90 2.57
1757 1842 3.392616 AGAGCATTAATGACCCCTCGAAT 59.607 43.478 19.73 0.00 0.00 3.34
1820 1905 6.546034 AGGTAAAGAAAGACTGCAAAGCTAAA 59.454 34.615 0.00 0.00 0.00 1.85
1839 1924 9.582648 GGGGAAGCTAAATTAATATGAGGTAAA 57.417 33.333 0.00 0.00 0.00 2.01
1853 1938 3.089284 CTGGAAAACGGGGAAGCTAAAT 58.911 45.455 0.00 0.00 0.00 1.40
1864 1949 0.250989 TAAGGCCCACTGGAAAACGG 60.251 55.000 0.00 0.00 0.00 4.44
1865 1950 0.879090 GTAAGGCCCACTGGAAAACG 59.121 55.000 0.00 0.00 0.00 3.60
1871 1956 2.039879 AGTTAGTTGTAAGGCCCACTGG 59.960 50.000 0.00 0.00 0.00 4.00
1872 1957 3.418684 AGTTAGTTGTAAGGCCCACTG 57.581 47.619 0.00 0.00 0.00 3.66
1873 1958 5.774102 AATAGTTAGTTGTAAGGCCCACT 57.226 39.130 0.00 0.00 0.00 4.00
1874 1959 7.012989 CCATAAATAGTTAGTTGTAAGGCCCAC 59.987 40.741 0.00 0.00 0.00 4.61
1907 2025 0.451783 CTTATGGCGTTCTTGCACCC 59.548 55.000 0.00 0.00 36.28 4.61
1937 2055 1.697982 GTGTCCTTGGGTGTCCTAACT 59.302 52.381 0.00 0.00 0.00 2.24
1944 2062 1.214175 TGATGTTGTGTCCTTGGGTGT 59.786 47.619 0.00 0.00 0.00 4.16
1953 2071 8.935844 TCAAGAATGTAGTAATGATGTTGTGTC 58.064 33.333 0.00 0.00 0.00 3.67
2010 2128 2.271800 GCAGGTTCCATCGTAGAACAG 58.728 52.381 13.91 8.67 44.40 3.16
2019 2137 0.537188 TCTTCCTCGCAGGTTCCATC 59.463 55.000 2.68 0.00 36.53 3.51
2028 2146 0.321564 CCACAATGGTCTTCCTCGCA 60.322 55.000 0.00 0.00 31.35 5.10
2030 2148 0.324943 ACCCACAATGGTCTTCCTCG 59.675 55.000 0.00 0.00 35.17 4.63
2038 2156 0.188342 AGGAAAGCACCCACAATGGT 59.812 50.000 0.00 0.00 39.96 3.55
2051 2169 6.238869 GGCCATAAGCAAGATAAGAAGGAAAG 60.239 42.308 0.00 0.00 46.50 2.62
2101 2219 5.456497 CACTATAGCAAAAATGCCGATGTTG 59.544 40.000 0.00 0.00 34.90 3.33
2104 2222 5.173774 ACACTATAGCAAAAATGCCGATG 57.826 39.130 0.00 0.00 34.90 3.84
2108 2226 5.469479 ACACAACACTATAGCAAAAATGCC 58.531 37.500 0.00 0.00 34.90 4.40
2117 2235 7.411588 GCACAAGTACTAACACAACACTATAGC 60.412 40.741 0.00 0.00 0.00 2.97
2156 2274 7.615365 ACAAGTACCATCAATGTGGATAACAAT 59.385 33.333 8.46 0.00 43.61 2.71
2257 2375 2.092429 TCATTCTCCCTACCCATGCAAC 60.092 50.000 0.00 0.00 0.00 4.17
2276 2394 3.171949 TGCATGTCGGCAATCATCA 57.828 47.368 0.00 0.00 41.65 3.07
2405 2523 9.944663 GTAAACGATTATGCCATCTTTTAATGA 57.055 29.630 0.00 0.00 31.97 2.57
2448 2566 0.179089 CTTGGAGGGAGAGTCGCATG 60.179 60.000 0.00 0.00 0.00 4.06
2457 2575 6.096564 ACGAAATAGTAGTAACTTGGAGGGAG 59.903 42.308 0.00 0.00 37.15 4.30
2461 2579 9.666626 CATCTACGAAATAGTAGTAACTTGGAG 57.333 37.037 0.00 0.00 43.31 3.86
2484 2602 1.805120 GCATGTTGCTGCCCAATCATC 60.805 52.381 0.00 0.00 40.96 2.92
2495 2613 8.803204 CCAGATTGGTACTAGAGCATGTTGCT 62.803 46.154 0.81 0.81 44.64 3.91
2496 2614 4.272018 CAGATTGGTACTAGAGCATGTTGC 59.728 45.833 0.00 0.00 45.46 4.17
2497 2615 4.813161 CCAGATTGGTACTAGAGCATGTTG 59.187 45.833 0.00 0.00 34.92 3.33
2499 2617 3.389329 CCCAGATTGGTACTAGAGCATGT 59.611 47.826 0.00 0.00 35.17 3.21
2503 2621 3.031736 TCACCCAGATTGGTACTAGAGC 58.968 50.000 0.00 0.00 36.67 4.09
2504 2622 5.878406 AATCACCCAGATTGGTACTAGAG 57.122 43.478 0.00 0.00 45.11 2.43
2515 2633 6.777580 ACAAAGTTTTAGACAATCACCCAGAT 59.222 34.615 0.00 0.00 39.09 2.90
2516 2634 6.126409 ACAAAGTTTTAGACAATCACCCAGA 58.874 36.000 0.00 0.00 0.00 3.86
2517 2635 6.391227 ACAAAGTTTTAGACAATCACCCAG 57.609 37.500 0.00 0.00 0.00 4.45
2519 2637 8.573035 TGAATACAAAGTTTTAGACAATCACCC 58.427 33.333 0.00 0.00 0.00 4.61
2520 2638 9.959749 TTGAATACAAAGTTTTAGACAATCACC 57.040 29.630 0.00 0.00 32.73 4.02
2547 2682 6.975196 TGTATTTCCCATAACATCCCAATG 57.025 37.500 0.00 0.00 38.93 2.82
2635 2771 5.063944 CGTGCTAGCAGAGTGTCAAAAATAT 59.936 40.000 20.03 0.00 0.00 1.28
2639 2775 2.135139 CGTGCTAGCAGAGTGTCAAAA 58.865 47.619 20.03 0.00 0.00 2.44
2658 2794 9.110617 GACATTATCAAATAACAAGATGATGCG 57.889 33.333 0.00 0.00 38.55 4.73
2705 2841 3.544684 TCGGTGATATGTACGTACTGGT 58.455 45.455 25.12 14.03 0.00 4.00
2706 2842 3.562973 ACTCGGTGATATGTACGTACTGG 59.437 47.826 25.12 6.85 0.00 4.00
2707 2843 4.034858 ACACTCGGTGATATGTACGTACTG 59.965 45.833 25.12 13.15 36.96 2.74
2708 2844 4.194640 ACACTCGGTGATATGTACGTACT 58.805 43.478 25.12 13.70 36.96 2.73
2709 2845 4.521943 GACACTCGGTGATATGTACGTAC 58.478 47.826 18.90 18.90 36.96 3.67
2710 2846 3.561310 GGACACTCGGTGATATGTACGTA 59.439 47.826 10.46 0.00 36.96 3.57
2712 2848 2.356695 TGGACACTCGGTGATATGTACG 59.643 50.000 10.46 0.00 36.96 3.67
2713 2849 3.129813 TGTGGACACTCGGTGATATGTAC 59.870 47.826 10.46 0.00 36.96 2.90
2718 3133 2.521126 TCTTGTGGACACTCGGTGATA 58.479 47.619 10.46 0.00 36.96 2.15
2740 3155 2.225727 CCTCGGTTAGTTTTTGAGCACC 59.774 50.000 0.00 0.00 0.00 5.01
2756 3171 0.534412 ATCTCTGTCTTGTGCCTCGG 59.466 55.000 0.00 0.00 0.00 4.63
2769 3184 2.226896 CGCCTCGTCGCAATCTCTG 61.227 63.158 0.00 0.00 0.00 3.35
2793 3208 5.473504 CCTGGCACTATTCAACTTTTACACT 59.526 40.000 0.00 0.00 0.00 3.55
2818 3236 5.491078 AGGACCATTAAAACCATAGACCTCA 59.509 40.000 0.00 0.00 0.00 3.86
2836 3254 3.581332 ACAATCGAACCTTAAGAGGACCA 59.419 43.478 3.36 0.00 46.74 4.02
2839 3257 3.581332 ACCACAATCGAACCTTAAGAGGA 59.419 43.478 3.36 0.00 46.74 3.71
2858 3276 4.905456 TCTTCTTCTTCTTCCCTTACACCA 59.095 41.667 0.00 0.00 0.00 4.17
2860 3278 6.760291 TCTTCTTCTTCTTCTTCCCTTACAC 58.240 40.000 0.00 0.00 0.00 2.90
2865 3283 6.556874 TCTTCTTCTTCTTCTTCTTCTTCCCT 59.443 38.462 0.00 0.00 0.00 4.20
2879 3297 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2880 3298 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2881 3299 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2882 3300 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2883 3301 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2884 3302 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2885 3303 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2886 3304 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2887 3305 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2888 3306 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2889 3307 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2890 3308 9.898152 TTTCTTCTTCTTCTTCTTCTTCTTCTT 57.102 29.630 0.00 0.00 0.00 2.52
2891 3309 9.546428 CTTTCTTCTTCTTCTTCTTCTTCTTCT 57.454 33.333 0.00 0.00 0.00 2.85
2892 3310 8.773645 CCTTTCTTCTTCTTCTTCTTCTTCTTC 58.226 37.037 0.00 0.00 0.00 2.87
2893 3311 7.719193 CCCTTTCTTCTTCTTCTTCTTCTTCTT 59.281 37.037 0.00 0.00 0.00 2.52
2894 3312 7.223584 CCCTTTCTTCTTCTTCTTCTTCTTCT 58.776 38.462 0.00 0.00 0.00 2.85
2895 3313 6.429692 CCCCTTTCTTCTTCTTCTTCTTCTTC 59.570 42.308 0.00 0.00 0.00 2.87
2896 3314 6.126332 ACCCCTTTCTTCTTCTTCTTCTTCTT 60.126 38.462 0.00 0.00 0.00 2.52
2897 3315 5.371176 ACCCCTTTCTTCTTCTTCTTCTTCT 59.629 40.000 0.00 0.00 0.00 2.85
2898 3316 5.626142 ACCCCTTTCTTCTTCTTCTTCTTC 58.374 41.667 0.00 0.00 0.00 2.87
2899 3317 5.654901 ACCCCTTTCTTCTTCTTCTTCTT 57.345 39.130 0.00 0.00 0.00 2.52
2900 3318 5.654901 AACCCCTTTCTTCTTCTTCTTCT 57.345 39.130 0.00 0.00 0.00 2.85
2901 3319 5.941058 CCTAACCCCTTTCTTCTTCTTCTTC 59.059 44.000 0.00 0.00 0.00 2.87
2902 3320 5.222151 CCCTAACCCCTTTCTTCTTCTTCTT 60.222 44.000 0.00 0.00 0.00 2.52
2903 3321 4.289934 CCCTAACCCCTTTCTTCTTCTTCT 59.710 45.833 0.00 0.00 0.00 2.85
2904 3322 4.590918 CCCTAACCCCTTTCTTCTTCTTC 58.409 47.826 0.00 0.00 0.00 2.87
2905 3323 3.245300 GCCCTAACCCCTTTCTTCTTCTT 60.245 47.826 0.00 0.00 0.00 2.52
2906 3324 2.309162 GCCCTAACCCCTTTCTTCTTCT 59.691 50.000 0.00 0.00 0.00 2.85
2907 3325 2.309162 AGCCCTAACCCCTTTCTTCTTC 59.691 50.000 0.00 0.00 0.00 2.87
2908 3326 2.359243 AGCCCTAACCCCTTTCTTCTT 58.641 47.619 0.00 0.00 0.00 2.52
2909 3327 2.041755 CAAGCCCTAACCCCTTTCTTCT 59.958 50.000 0.00 0.00 0.00 2.85
2910 3328 2.041216 TCAAGCCCTAACCCCTTTCTTC 59.959 50.000 0.00 0.00 0.00 2.87
2911 3329 2.070573 TCAAGCCCTAACCCCTTTCTT 58.929 47.619 0.00 0.00 0.00 2.52
2912 3330 1.755200 TCAAGCCCTAACCCCTTTCT 58.245 50.000 0.00 0.00 0.00 2.52
2913 3331 2.225041 ACTTCAAGCCCTAACCCCTTTC 60.225 50.000 0.00 0.00 0.00 2.62
2914 3332 1.787058 ACTTCAAGCCCTAACCCCTTT 59.213 47.619 0.00 0.00 0.00 3.11
2915 3333 1.456919 ACTTCAAGCCCTAACCCCTT 58.543 50.000 0.00 0.00 0.00 3.95
2958 3376 7.875327 TTTCCCCATGACTATTAACTTAAGC 57.125 36.000 1.29 0.00 0.00 3.09
2971 3389 1.611491 TCGCAAGTTTTTCCCCATGAC 59.389 47.619 0.00 0.00 39.48 3.06
2989 3407 4.159377 TGATACTTTTTGCCTTTGCTCG 57.841 40.909 0.00 0.00 38.71 5.03
2998 3416 5.768317 TGCACTTACCTTGATACTTTTTGC 58.232 37.500 0.00 0.00 0.00 3.68
3030 3448 5.748402 TCATCTGCCACTGATTCTGTTATT 58.252 37.500 0.00 0.00 0.00 1.40
3031 3449 5.363562 TCATCTGCCACTGATTCTGTTAT 57.636 39.130 0.00 0.00 0.00 1.89
3032 3450 4.824479 TCATCTGCCACTGATTCTGTTA 57.176 40.909 0.00 0.00 0.00 2.41
3033 3451 3.708403 TCATCTGCCACTGATTCTGTT 57.292 42.857 0.00 0.00 0.00 3.16
3034 3452 3.708403 TTCATCTGCCACTGATTCTGT 57.292 42.857 0.00 0.00 0.00 3.41
3035 3453 3.754850 TGTTTCATCTGCCACTGATTCTG 59.245 43.478 0.00 0.00 0.00 3.02
3036 3454 4.025040 TGTTTCATCTGCCACTGATTCT 57.975 40.909 0.00 0.00 0.00 2.40
3037 3455 4.771590 TTGTTTCATCTGCCACTGATTC 57.228 40.909 0.00 0.00 0.00 2.52
3063 3481 5.952347 GGTTCTTCCCCTTGAATTCTAATGT 59.048 40.000 7.05 0.00 31.06 2.71
3064 3482 6.096001 CAGGTTCTTCCCCTTGAATTCTAATG 59.904 42.308 7.05 0.00 36.75 1.90
3065 3483 6.190587 CAGGTTCTTCCCCTTGAATTCTAAT 58.809 40.000 7.05 0.00 36.75 1.73
3066 3484 5.074515 ACAGGTTCTTCCCCTTGAATTCTAA 59.925 40.000 7.05 0.00 36.75 2.10
3067 3485 4.601857 ACAGGTTCTTCCCCTTGAATTCTA 59.398 41.667 7.05 0.00 36.75 2.10
3068 3486 3.399305 ACAGGTTCTTCCCCTTGAATTCT 59.601 43.478 7.05 0.00 36.75 2.40
3069 3487 3.767711 ACAGGTTCTTCCCCTTGAATTC 58.232 45.455 0.00 0.00 36.75 2.17
3070 3488 3.897505 CAACAGGTTCTTCCCCTTGAATT 59.102 43.478 0.00 0.00 36.75 2.17
3071 3489 3.500343 CAACAGGTTCTTCCCCTTGAAT 58.500 45.455 0.00 0.00 36.75 2.57
3072 3490 2.424234 CCAACAGGTTCTTCCCCTTGAA 60.424 50.000 0.00 0.00 36.75 2.69
3073 3491 1.144913 CCAACAGGTTCTTCCCCTTGA 59.855 52.381 0.00 0.00 36.75 3.02
3074 3492 1.620822 CCAACAGGTTCTTCCCCTTG 58.379 55.000 0.00 0.00 36.75 3.61
3075 3493 0.178961 GCCAACAGGTTCTTCCCCTT 60.179 55.000 0.00 0.00 36.75 3.95
3076 3494 1.068352 AGCCAACAGGTTCTTCCCCT 61.068 55.000 0.00 0.00 36.75 4.79
3077 3495 0.609406 GAGCCAACAGGTTCTTCCCC 60.609 60.000 0.00 0.00 36.75 4.81
3078 3496 0.402121 AGAGCCAACAGGTTCTTCCC 59.598 55.000 0.00 0.00 39.65 3.97
3079 3497 1.528129 CAGAGCCAACAGGTTCTTCC 58.472 55.000 0.00 0.00 40.54 3.46
3080 3498 0.877743 GCAGAGCCAACAGGTTCTTC 59.122 55.000 0.00 0.00 40.54 2.87
3081 3499 0.475906 AGCAGAGCCAACAGGTTCTT 59.524 50.000 0.00 0.00 40.54 2.52
3082 3500 0.475906 AAGCAGAGCCAACAGGTTCT 59.524 50.000 0.00 0.00 42.90 3.01
3083 3501 1.268079 GAAAGCAGAGCCAACAGGTTC 59.732 52.381 0.00 0.00 33.26 3.62
3084 3502 1.322442 GAAAGCAGAGCCAACAGGTT 58.678 50.000 0.00 0.00 0.00 3.50
3085 3503 0.538287 GGAAAGCAGAGCCAACAGGT 60.538 55.000 0.00 0.00 0.00 4.00
3086 3504 0.251077 AGGAAAGCAGAGCCAACAGG 60.251 55.000 0.00 0.00 0.00 4.00
3087 3505 1.163554 GAGGAAAGCAGAGCCAACAG 58.836 55.000 0.00 0.00 0.00 3.16
3088 3506 0.767375 AGAGGAAAGCAGAGCCAACA 59.233 50.000 0.00 0.00 0.00 3.33
3089 3507 1.902938 AAGAGGAAAGCAGAGCCAAC 58.097 50.000 0.00 0.00 0.00 3.77
3090 3508 2.664402 AAAGAGGAAAGCAGAGCCAA 57.336 45.000 0.00 0.00 0.00 4.52
3091 3509 2.639839 AGTAAAGAGGAAAGCAGAGCCA 59.360 45.455 0.00 0.00 0.00 4.75
3092 3510 3.055458 AGAGTAAAGAGGAAAGCAGAGCC 60.055 47.826 0.00 0.00 0.00 4.70
3093 3511 4.200838 AGAGTAAAGAGGAAAGCAGAGC 57.799 45.455 0.00 0.00 0.00 4.09
3094 3512 5.106752 GCAAAGAGTAAAGAGGAAAGCAGAG 60.107 44.000 0.00 0.00 0.00 3.35
3095 3513 4.757149 GCAAAGAGTAAAGAGGAAAGCAGA 59.243 41.667 0.00 0.00 0.00 4.26
3096 3514 4.377841 CGCAAAGAGTAAAGAGGAAAGCAG 60.378 45.833 0.00 0.00 0.00 4.24
3097 3515 3.498397 CGCAAAGAGTAAAGAGGAAAGCA 59.502 43.478 0.00 0.00 0.00 3.91
3098 3516 3.746492 TCGCAAAGAGTAAAGAGGAAAGC 59.254 43.478 0.00 0.00 0.00 3.51
3099 3517 5.523013 CTCGCAAAGAGTAAAGAGGAAAG 57.477 43.478 0.00 0.00 41.99 2.62
3112 3530 2.157834 TAAAGTTCCGCTCGCAAAGA 57.842 45.000 0.00 0.00 0.00 2.52
3113 3531 2.961522 TTAAAGTTCCGCTCGCAAAG 57.038 45.000 0.00 0.00 0.00 2.77
3114 3532 3.181528 CGTATTAAAGTTCCGCTCGCAAA 60.182 43.478 0.00 0.00 0.00 3.68
3115 3533 2.346244 CGTATTAAAGTTCCGCTCGCAA 59.654 45.455 0.00 0.00 0.00 4.85
3116 3534 1.921887 CGTATTAAAGTTCCGCTCGCA 59.078 47.619 0.00 0.00 0.00 5.10
3117 3535 2.187707 TCGTATTAAAGTTCCGCTCGC 58.812 47.619 0.00 0.00 0.00 5.03
3118 3536 3.000376 GGTTCGTATTAAAGTTCCGCTCG 60.000 47.826 0.00 0.00 0.00 5.03
3119 3537 3.308053 GGGTTCGTATTAAAGTTCCGCTC 59.692 47.826 0.00 0.00 0.00 5.03
3120 3538 3.264947 GGGTTCGTATTAAAGTTCCGCT 58.735 45.455 0.00 0.00 0.00 5.52
3121 3539 2.352651 GGGGTTCGTATTAAAGTTCCGC 59.647 50.000 0.00 0.00 0.00 5.54
3122 3540 3.865446 AGGGGTTCGTATTAAAGTTCCG 58.135 45.455 0.00 0.00 0.00 4.30
3123 3541 4.813161 GCTAGGGGTTCGTATTAAAGTTCC 59.187 45.833 0.00 0.00 0.00 3.62
3124 3542 5.668471 AGCTAGGGGTTCGTATTAAAGTTC 58.332 41.667 0.00 0.00 0.00 3.01
3125 3543 5.424573 AGAGCTAGGGGTTCGTATTAAAGTT 59.575 40.000 0.00 0.00 0.00 2.66
3167 3585 3.334583 TTCCACTACAGCCACAATCTC 57.665 47.619 0.00 0.00 0.00 2.75
3169 3587 3.146066 TGTTTCCACTACAGCCACAATC 58.854 45.455 0.00 0.00 0.00 2.67
3172 3590 1.765904 TCTGTTTCCACTACAGCCACA 59.234 47.619 0.00 0.00 42.12 4.17
3198 3616 4.907875 TGGCCCACTTAAGATAGCTTCTAT 59.092 41.667 10.09 0.00 35.56 1.98
3257 3675 1.064458 GTCGACTAGGAGAAGCGGC 59.936 63.158 8.70 0.00 0.00 6.53
3270 3688 4.792528 AAGTATCACTAGTAGCGTCGAC 57.207 45.455 5.18 5.18 0.00 4.20
3274 3692 3.700038 AGGCAAAGTATCACTAGTAGCGT 59.300 43.478 0.00 0.00 0.00 5.07
3276 3694 4.099573 TGGAGGCAAAGTATCACTAGTAGC 59.900 45.833 0.00 0.00 0.00 3.58
3281 3699 4.962362 TGAGATGGAGGCAAAGTATCACTA 59.038 41.667 0.00 0.00 0.00 2.74
3400 3818 5.163913 CGCTTCAAAACACCACAAAAATGAA 60.164 36.000 0.00 0.00 0.00 2.57
3401 3819 4.328440 CGCTTCAAAACACCACAAAAATGA 59.672 37.500 0.00 0.00 0.00 2.57
3439 3857 7.415206 CCGAATAAACCAAGGAAAGGAACATAG 60.415 40.741 0.00 0.00 0.00 2.23
3516 3935 7.446001 ACCAACACATGAACAAAACAAAAAT 57.554 28.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.