Multiple sequence alignment - TraesCS3A01G001900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G001900 chr3A 100.000 2672 0 0 1 2672 1327660 1324989 0.000000e+00 4935.0
1 TraesCS3A01G001900 chr3B 86.700 1015 37 29 938 1918 1463771 1462821 0.000000e+00 1037.0
2 TraesCS3A01G001900 chr3B 86.890 328 18 7 2298 2605 1462183 1461861 7.080000e-91 344.0
3 TraesCS3A01G001900 chr3B 84.549 233 11 7 2036 2266 1462757 1462548 9.690000e-50 207.0
4 TraesCS3A01G001900 chrUn 87.687 601 30 26 1350 1934 43310131 43310703 0.000000e+00 660.0
5 TraesCS3A01G001900 chrUn 87.500 368 21 7 2285 2632 43311134 43311496 4.140000e-108 401.0
6 TraesCS3A01G001900 chrUn 90.588 255 20 4 942 1195 43308695 43308946 4.260000e-88 335.0
7 TraesCS3A01G001900 chrUn 86.580 231 7 9 2035 2265 43310755 43310961 1.600000e-57 233.0
8 TraesCS3A01G001900 chrUn 97.727 44 1 0 2629 2672 43311519 43311562 2.850000e-10 76.8
9 TraesCS3A01G001900 chr6A 87.119 427 38 6 320 746 99090173 99089764 4.030000e-128 468.0
10 TraesCS3A01G001900 chr6A 83.766 154 21 2 50 203 502338987 502339136 2.770000e-30 143.0
11 TraesCS3A01G001900 chr4B 86.150 426 43 7 318 743 116170491 116170900 1.890000e-121 446.0
12 TraesCS3A01G001900 chr4B 81.924 343 33 17 1 315 71917516 71917857 2.040000e-66 263.0
13 TraesCS3A01G001900 chr4B 87.554 233 18 6 49 277 116169231 116169456 2.640000e-65 259.0
14 TraesCS3A01G001900 chr4A 85.421 439 45 8 318 755 492522716 492523136 3.160000e-119 438.0
15 TraesCS3A01G001900 chr4A 83.904 292 30 14 1 277 492388328 492388617 2.040000e-66 263.0
16 TraesCS3A01G001900 chr4A 100.000 34 0 0 579 612 196768463 196768496 2.220000e-06 63.9
17 TraesCS3A01G001900 chr1B 84.691 405 43 8 318 722 667052444 667052059 1.160000e-103 387.0
18 TraesCS3A01G001900 chr4D 87.647 340 25 6 318 657 82270715 82271037 1.940000e-101 379.0
19 TraesCS3A01G001900 chr4D 84.068 295 28 13 1 277 82269379 82269672 1.580000e-67 267.0
20 TraesCS3A01G001900 chr4D 90.840 131 12 0 620 750 481417648 481417778 2.730000e-40 176.0
21 TraesCS3A01G001900 chr4D 85.577 104 14 1 653 755 82285458 82285561 1.010000e-19 108.0
22 TraesCS3A01G001900 chr1A 83.951 405 37 10 318 722 575186527 575186151 1.960000e-96 363.0
23 TraesCS3A01G001900 chr7A 84.701 268 24 13 26 277 643179387 643179121 4.420000e-63 252.0
24 TraesCS3A01G001900 chr2D 81.944 216 31 7 70 279 71467763 71467976 2.730000e-40 176.0
25 TraesCS3A01G001900 chr2D 82.581 155 23 2 50 204 27617283 27617133 1.670000e-27 134.0
26 TraesCS3A01G001900 chr2D 80.000 150 26 2 50 199 372180143 372180288 1.010000e-19 108.0
27 TraesCS3A01G001900 chr5B 77.083 288 50 13 1 273 705334264 705334550 4.610000e-33 152.0
28 TraesCS3A01G001900 chr5B 76.736 288 51 14 1 273 705343719 705344005 2.140000e-31 147.0
29 TraesCS3A01G001900 chr7B 77.481 262 26 14 1716 1974 210656902 210657133 2.790000e-25 126.0
30 TraesCS3A01G001900 chr6D 77.922 154 26 7 492 644 451798348 451798202 3.660000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G001900 chr3A 1324989 1327660 2671 True 4935.000000 4935 100.000000 1 2672 1 chr3A.!!$R1 2671
1 TraesCS3A01G001900 chr3B 1461861 1463771 1910 True 529.333333 1037 86.046333 938 2605 3 chr3B.!!$R1 1667
2 TraesCS3A01G001900 chrUn 43308695 43311562 2867 False 341.160000 660 90.016400 942 2672 5 chrUn.!!$F1 1730
3 TraesCS3A01G001900 chr4B 116169231 116170900 1669 False 352.500000 446 86.852000 49 743 2 chr4B.!!$F2 694
4 TraesCS3A01G001900 chr4D 82269379 82271037 1658 False 323.000000 379 85.857500 1 657 2 chr4D.!!$F3 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 1701 0.031314 GATGGATTCGAGAGCTGCGA 59.969 55.0 4.31 4.31 35.76 5.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 4144 0.550914 TCAGGGGACAGCAAAAGTGT 59.449 50.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.689383 ACAACACCAACTTATGTGATGTC 57.311 39.130 0.00 0.00 42.52 3.06
69 87 4.761235 ATGCAAAGGAATCATAGATGCG 57.239 40.909 0.00 0.00 35.18 4.73
70 88 3.807553 TGCAAAGGAATCATAGATGCGA 58.192 40.909 0.00 0.00 35.18 5.10
71 89 3.811497 TGCAAAGGAATCATAGATGCGAG 59.189 43.478 0.00 0.00 35.18 5.03
153 171 7.667635 TCATGGTGAAAGATGTGTATACCAAAA 59.332 33.333 0.00 0.00 39.82 2.44
154 172 7.447374 TGGTGAAAGATGTGTATACCAAAAG 57.553 36.000 0.00 0.00 34.12 2.27
155 173 6.432783 TGGTGAAAGATGTGTATACCAAAAGG 59.567 38.462 0.00 0.00 34.12 3.11
156 174 6.657541 GGTGAAAGATGTGTATACCAAAAGGA 59.342 38.462 0.00 0.00 0.00 3.36
157 175 7.148239 GGTGAAAGATGTGTATACCAAAAGGAG 60.148 40.741 0.00 0.00 0.00 3.69
207 229 5.334319 TCATTGTTTCAATCTTGCATAGCG 58.666 37.500 0.00 0.00 0.00 4.26
211 233 5.767269 TGTTTCAATCTTGCATAGCGAAAA 58.233 33.333 0.00 0.00 0.00 2.29
239 261 5.125097 CCTGGCATCTTATTGATAATCCAGC 59.875 44.000 0.00 0.00 40.75 4.85
267 289 6.693315 TTATGTGCAACTATCCTAAAAGCC 57.307 37.500 0.00 0.00 38.04 4.35
274 309 5.629366 GCAACTATCCTAAAAGCCAGGTAGT 60.629 44.000 0.00 0.00 34.38 2.73
294 329 4.636249 AGTTCTCTTGAGTGCTACTTTGG 58.364 43.478 0.00 0.00 0.00 3.28
297 332 5.489792 TCTCTTGAGTGCTACTTTGGAAT 57.510 39.130 0.00 0.00 0.00 3.01
346 1375 2.465210 GCGGCAGCTAATGAAAGAAG 57.535 50.000 0.00 0.00 41.01 2.85
347 1376 1.740025 GCGGCAGCTAATGAAAGAAGT 59.260 47.619 0.00 0.00 41.01 3.01
349 1378 2.744202 CGGCAGCTAATGAAAGAAGTGT 59.256 45.455 0.00 0.00 0.00 3.55
350 1379 3.425359 CGGCAGCTAATGAAAGAAGTGTG 60.425 47.826 0.00 0.00 0.00 3.82
351 1380 3.496155 GCAGCTAATGAAAGAAGTGTGC 58.504 45.455 0.00 0.00 0.00 4.57
352 1381 3.740590 CAGCTAATGAAAGAAGTGTGCG 58.259 45.455 0.00 0.00 0.00 5.34
354 1383 3.433615 AGCTAATGAAAGAAGTGTGCGAC 59.566 43.478 0.00 0.00 0.00 5.19
355 1384 3.186409 GCTAATGAAAGAAGTGTGCGACA 59.814 43.478 0.00 0.00 0.00 4.35
378 1407 7.633621 ACACATTATATGATTCTTTCACAGCG 58.366 34.615 0.00 0.00 37.11 5.18
437 1467 2.034066 TGTGGGCTGTAGCAAGGC 59.966 61.111 6.18 0.00 44.36 4.35
441 1471 3.127533 GGCTGTAGCAAGGCCGTG 61.128 66.667 15.06 15.06 44.36 4.94
455 1485 1.674611 GCCGTGTCGTGATCAACTCG 61.675 60.000 12.73 12.73 36.93 4.18
456 1486 0.109919 CCGTGTCGTGATCAACTCGA 60.110 55.000 18.65 11.94 41.17 4.04
473 1503 2.997897 ACCGGACAGTCTGGAGGC 60.998 66.667 32.12 0.00 45.95 4.70
478 1508 0.533032 GGACAGTCTGGAGGCAGTAC 59.467 60.000 4.53 0.00 0.00 2.73
484 1514 1.825474 GTCTGGAGGCAGTACAAGCTA 59.175 52.381 9.72 0.00 0.00 3.32
490 1520 3.491792 GGAGGCAGTACAAGCTATGAGAC 60.492 52.174 9.72 0.00 0.00 3.36
507 1537 3.686241 TGAGACATGGCAATTCTTCTTCG 59.314 43.478 0.00 0.00 0.00 3.79
521 1551 2.518112 TTCGGTGGCAAGCAAGCA 60.518 55.556 0.00 0.00 35.83 3.91
544 1574 9.256477 AGCACAATTATTGATGATTGCTATTTG 57.744 29.630 15.24 0.17 37.30 2.32
566 1596 5.139727 TGATGCCCTCGGATTTTAATCATT 58.860 37.500 4.97 0.00 37.15 2.57
617 1647 8.721478 AGTGTAATAAAGTAGCACATGAACTTG 58.279 33.333 0.00 0.00 33.85 3.16
618 1648 8.504005 GTGTAATAAAGTAGCACATGAACTTGT 58.496 33.333 0.00 0.00 33.85 3.16
636 1666 9.959749 TGAACTTGTTAGGCTAGTTAAATTTTG 57.040 29.630 0.00 0.00 41.80 2.44
645 1675 7.010771 AGGCTAGTTAAATTTTGTCCTCCTTT 58.989 34.615 0.00 0.00 0.00 3.11
660 1690 5.532779 GTCCTCCTTTTGTATGGATGGATTC 59.467 44.000 0.00 0.00 34.59 2.52
662 1692 5.366482 TCCTTTTGTATGGATGGATTCGA 57.634 39.130 0.00 0.00 0.00 3.71
663 1693 5.368145 TCCTTTTGTATGGATGGATTCGAG 58.632 41.667 0.00 0.00 0.00 4.04
665 1695 5.468072 CCTTTTGTATGGATGGATTCGAGAG 59.532 44.000 0.00 0.00 0.00 3.20
670 1700 0.943359 GGATGGATTCGAGAGCTGCG 60.943 60.000 0.00 0.00 0.00 5.18
671 1701 0.031314 GATGGATTCGAGAGCTGCGA 59.969 55.000 4.31 4.31 35.76 5.10
676 1706 1.080501 TTCGAGAGCTGCGAAGGTG 60.081 57.895 14.85 0.00 42.17 4.00
681 1711 1.669115 GAGCTGCGAAGGTGCTTCA 60.669 57.895 0.00 0.00 40.17 3.02
695 1725 6.327279 AGGTGCTTCAATTACTTGTAAACC 57.673 37.500 0.00 0.00 33.87 3.27
700 1730 6.015519 TGCTTCAATTACTTGTAAACCATGCT 60.016 34.615 0.00 0.00 33.87 3.79
701 1731 6.308766 GCTTCAATTACTTGTAAACCATGCTG 59.691 38.462 0.00 0.00 33.87 4.41
703 1733 3.822594 TTACTTGTAAACCATGCTGCG 57.177 42.857 0.00 0.00 0.00 5.18
704 1734 0.881118 ACTTGTAAACCATGCTGCGG 59.119 50.000 0.00 0.00 0.00 5.69
743 1773 6.850752 AAAGGAGGAGAAGTTTGTCAAAAA 57.149 33.333 0.00 0.00 0.00 1.94
767 1797 4.654091 AAAATCATCGGTGGCATAAAGG 57.346 40.909 0.00 0.00 0.00 3.11
768 1798 3.297134 AATCATCGGTGGCATAAAGGT 57.703 42.857 0.00 0.00 0.00 3.50
769 1799 2.799126 TCATCGGTGGCATAAAGGTT 57.201 45.000 0.00 0.00 0.00 3.50
770 1800 3.080300 TCATCGGTGGCATAAAGGTTT 57.920 42.857 0.00 0.00 0.00 3.27
771 1801 3.426615 TCATCGGTGGCATAAAGGTTTT 58.573 40.909 0.00 0.00 0.00 2.43
772 1802 3.829601 TCATCGGTGGCATAAAGGTTTTT 59.170 39.130 0.00 0.00 0.00 1.94
824 1854 4.463050 TTTTTGTAGGAATCACAGGGGT 57.537 40.909 0.00 0.00 0.00 4.95
825 1855 3.433306 TTTGTAGGAATCACAGGGGTG 57.567 47.619 0.00 0.00 46.66 4.61
826 1856 2.038863 TGTAGGAATCACAGGGGTGT 57.961 50.000 0.00 0.00 45.45 4.16
827 1857 2.344592 TGTAGGAATCACAGGGGTGTT 58.655 47.619 0.00 0.00 45.45 3.32
828 1858 2.714250 TGTAGGAATCACAGGGGTGTTT 59.286 45.455 0.00 0.00 45.45 2.83
829 1859 3.911260 TGTAGGAATCACAGGGGTGTTTA 59.089 43.478 0.00 0.00 45.45 2.01
830 1860 3.721087 AGGAATCACAGGGGTGTTTAG 57.279 47.619 0.00 0.00 45.45 1.85
831 1861 2.986728 AGGAATCACAGGGGTGTTTAGT 59.013 45.455 0.00 0.00 45.45 2.24
832 1862 3.397955 AGGAATCACAGGGGTGTTTAGTT 59.602 43.478 0.00 0.00 45.45 2.24
833 1863 3.506067 GGAATCACAGGGGTGTTTAGTTG 59.494 47.826 0.00 0.00 45.45 3.16
834 1864 2.649531 TCACAGGGGTGTTTAGTTGG 57.350 50.000 0.00 0.00 45.45 3.77
835 1865 2.128535 TCACAGGGGTGTTTAGTTGGA 58.871 47.619 0.00 0.00 45.45 3.53
836 1866 2.158726 TCACAGGGGTGTTTAGTTGGAC 60.159 50.000 0.00 0.00 45.45 4.02
837 1867 1.144298 ACAGGGGTGTTTAGTTGGACC 59.856 52.381 0.00 0.00 0.00 4.46
838 1868 0.399075 AGGGGTGTTTAGTTGGACCG 59.601 55.000 0.00 0.00 0.00 4.79
839 1869 0.109153 GGGGTGTTTAGTTGGACCGT 59.891 55.000 0.00 0.00 0.00 4.83
840 1870 1.347378 GGGGTGTTTAGTTGGACCGTA 59.653 52.381 0.00 0.00 0.00 4.02
841 1871 2.613725 GGGGTGTTTAGTTGGACCGTAG 60.614 54.545 0.00 0.00 0.00 3.51
842 1872 2.037641 GGGTGTTTAGTTGGACCGTAGT 59.962 50.000 0.00 0.00 0.00 2.73
843 1873 3.258123 GGGTGTTTAGTTGGACCGTAGTA 59.742 47.826 0.00 0.00 0.00 1.82
844 1874 4.262420 GGGTGTTTAGTTGGACCGTAGTAA 60.262 45.833 0.00 0.00 0.00 2.24
845 1875 4.925646 GGTGTTTAGTTGGACCGTAGTAAG 59.074 45.833 0.00 0.00 0.00 2.34
846 1876 5.509670 GGTGTTTAGTTGGACCGTAGTAAGT 60.510 44.000 0.00 0.00 0.00 2.24
847 1877 6.294508 GGTGTTTAGTTGGACCGTAGTAAGTA 60.295 42.308 0.00 0.00 0.00 2.24
848 1878 7.315890 GTGTTTAGTTGGACCGTAGTAAGTAT 58.684 38.462 0.00 0.00 0.00 2.12
849 1879 7.814587 GTGTTTAGTTGGACCGTAGTAAGTATT 59.185 37.037 0.00 0.00 0.00 1.89
850 1880 8.367156 TGTTTAGTTGGACCGTAGTAAGTATTT 58.633 33.333 0.00 0.00 0.00 1.40
851 1881 9.208022 GTTTAGTTGGACCGTAGTAAGTATTTT 57.792 33.333 0.00 0.00 0.00 1.82
852 1882 8.761575 TTAGTTGGACCGTAGTAAGTATTTTG 57.238 34.615 0.00 0.00 0.00 2.44
853 1883 6.762333 AGTTGGACCGTAGTAAGTATTTTGT 58.238 36.000 0.00 0.00 0.00 2.83
854 1884 6.647895 AGTTGGACCGTAGTAAGTATTTTGTG 59.352 38.462 0.00 0.00 0.00 3.33
855 1885 5.481105 TGGACCGTAGTAAGTATTTTGTGG 58.519 41.667 0.00 0.00 0.00 4.17
856 1886 4.872124 GGACCGTAGTAAGTATTTTGTGGG 59.128 45.833 0.00 0.00 0.00 4.61
857 1887 4.256110 ACCGTAGTAAGTATTTTGTGGGC 58.744 43.478 0.00 0.00 0.00 5.36
858 1888 4.019950 ACCGTAGTAAGTATTTTGTGGGCT 60.020 41.667 0.00 0.00 0.00 5.19
859 1889 4.331717 CCGTAGTAAGTATTTTGTGGGCTG 59.668 45.833 0.00 0.00 0.00 4.85
860 1890 4.201783 CGTAGTAAGTATTTTGTGGGCTGC 60.202 45.833 0.00 0.00 0.00 5.25
861 1891 2.747446 AGTAAGTATTTTGTGGGCTGCG 59.253 45.455 0.00 0.00 0.00 5.18
862 1892 0.887933 AAGTATTTTGTGGGCTGCGG 59.112 50.000 0.00 0.00 0.00 5.69
863 1893 1.153842 GTATTTTGTGGGCTGCGGC 60.154 57.895 9.72 9.72 37.82 6.53
879 1909 2.910360 GCCCAAAATGCCATCCCC 59.090 61.111 0.00 0.00 0.00 4.81
880 1910 1.994507 GCCCAAAATGCCATCCCCA 60.995 57.895 0.00 0.00 0.00 4.96
881 1911 1.347243 GCCCAAAATGCCATCCCCAT 61.347 55.000 0.00 0.00 0.00 4.00
882 1912 0.760572 CCCAAAATGCCATCCCCATC 59.239 55.000 0.00 0.00 0.00 3.51
883 1913 0.760572 CCAAAATGCCATCCCCATCC 59.239 55.000 0.00 0.00 0.00 3.51
884 1914 1.693404 CCAAAATGCCATCCCCATCCT 60.693 52.381 0.00 0.00 0.00 3.24
885 1915 2.426121 CCAAAATGCCATCCCCATCCTA 60.426 50.000 0.00 0.00 0.00 2.94
886 1916 3.307506 CAAAATGCCATCCCCATCCTAA 58.692 45.455 0.00 0.00 0.00 2.69
887 1917 3.704545 AAATGCCATCCCCATCCTAAA 57.295 42.857 0.00 0.00 0.00 1.85
888 1918 3.704545 AATGCCATCCCCATCCTAAAA 57.295 42.857 0.00 0.00 0.00 1.52
889 1919 2.452600 TGCCATCCCCATCCTAAAAC 57.547 50.000 0.00 0.00 0.00 2.43
890 1920 1.063266 TGCCATCCCCATCCTAAAACC 60.063 52.381 0.00 0.00 0.00 3.27
891 1921 1.063266 GCCATCCCCATCCTAAAACCA 60.063 52.381 0.00 0.00 0.00 3.67
892 1922 2.625617 GCCATCCCCATCCTAAAACCAA 60.626 50.000 0.00 0.00 0.00 3.67
893 1923 3.031013 CCATCCCCATCCTAAAACCAAC 58.969 50.000 0.00 0.00 0.00 3.77
894 1924 2.911552 TCCCCATCCTAAAACCAACC 57.088 50.000 0.00 0.00 0.00 3.77
895 1925 2.074579 TCCCCATCCTAAAACCAACCA 58.925 47.619 0.00 0.00 0.00 3.67
896 1926 2.451273 TCCCCATCCTAAAACCAACCAA 59.549 45.455 0.00 0.00 0.00 3.67
897 1927 2.565391 CCCCATCCTAAAACCAACCAAC 59.435 50.000 0.00 0.00 0.00 3.77
898 1928 2.565391 CCCATCCTAAAACCAACCAACC 59.435 50.000 0.00 0.00 0.00 3.77
899 1929 2.565391 CCATCCTAAAACCAACCAACCC 59.435 50.000 0.00 0.00 0.00 4.11
900 1930 3.235200 CATCCTAAAACCAACCAACCCA 58.765 45.455 0.00 0.00 0.00 4.51
901 1931 3.399952 TCCTAAAACCAACCAACCCAA 57.600 42.857 0.00 0.00 0.00 4.12
902 1932 3.032459 TCCTAAAACCAACCAACCCAAC 58.968 45.455 0.00 0.00 0.00 3.77
903 1933 2.103432 CCTAAAACCAACCAACCCAACC 59.897 50.000 0.00 0.00 0.00 3.77
904 1934 0.913205 AAAACCAACCAACCCAACCC 59.087 50.000 0.00 0.00 0.00 4.11
905 1935 0.043485 AAACCAACCAACCCAACCCT 59.957 50.000 0.00 0.00 0.00 4.34
906 1936 0.935194 AACCAACCAACCCAACCCTA 59.065 50.000 0.00 0.00 0.00 3.53
907 1937 0.481128 ACCAACCAACCCAACCCTAG 59.519 55.000 0.00 0.00 0.00 3.02
908 1938 0.898326 CCAACCAACCCAACCCTAGC 60.898 60.000 0.00 0.00 0.00 3.42
909 1939 0.898326 CAACCAACCCAACCCTAGCC 60.898 60.000 0.00 0.00 0.00 3.93
910 1940 2.089116 AACCAACCCAACCCTAGCCC 62.089 60.000 0.00 0.00 0.00 5.19
911 1941 2.359011 CAACCCAACCCTAGCCCC 59.641 66.667 0.00 0.00 0.00 5.80
912 1942 2.944954 AACCCAACCCTAGCCCCC 60.945 66.667 0.00 0.00 0.00 5.40
913 1943 3.533717 AACCCAACCCTAGCCCCCT 62.534 63.158 0.00 0.00 0.00 4.79
914 1944 2.617215 CCCAACCCTAGCCCCCTT 60.617 66.667 0.00 0.00 0.00 3.95
915 1945 2.246126 CCCAACCCTAGCCCCCTTT 61.246 63.158 0.00 0.00 0.00 3.11
916 1946 1.000359 CCAACCCTAGCCCCCTTTG 60.000 63.158 0.00 0.00 0.00 2.77
917 1947 1.774300 CAACCCTAGCCCCCTTTGT 59.226 57.895 0.00 0.00 0.00 2.83
918 1948 0.323451 CAACCCTAGCCCCCTTTGTC 60.323 60.000 0.00 0.00 0.00 3.18
919 1949 0.477795 AACCCTAGCCCCCTTTGTCT 60.478 55.000 0.00 0.00 0.00 3.41
920 1950 0.914902 ACCCTAGCCCCCTTTGTCTC 60.915 60.000 0.00 0.00 0.00 3.36
921 1951 1.636769 CCCTAGCCCCCTTTGTCTCC 61.637 65.000 0.00 0.00 0.00 3.71
922 1952 0.914417 CCTAGCCCCCTTTGTCTCCA 60.914 60.000 0.00 0.00 0.00 3.86
923 1953 0.253327 CTAGCCCCCTTTGTCTCCAC 59.747 60.000 0.00 0.00 0.00 4.02
924 1954 0.178873 TAGCCCCCTTTGTCTCCACT 60.179 55.000 0.00 0.00 0.00 4.00
925 1955 1.002011 GCCCCCTTTGTCTCCACTC 60.002 63.158 0.00 0.00 0.00 3.51
926 1956 1.779061 GCCCCCTTTGTCTCCACTCA 61.779 60.000 0.00 0.00 0.00 3.41
927 1957 0.771127 CCCCCTTTGTCTCCACTCAA 59.229 55.000 0.00 0.00 0.00 3.02
928 1958 1.271597 CCCCCTTTGTCTCCACTCAAG 60.272 57.143 0.00 0.00 0.00 3.02
929 1959 1.699634 CCCCTTTGTCTCCACTCAAGA 59.300 52.381 0.00 0.00 0.00 3.02
930 1960 2.551071 CCCCTTTGTCTCCACTCAAGAC 60.551 54.545 0.00 0.00 42.83 3.01
931 1961 2.370189 CCCTTTGTCTCCACTCAAGACT 59.630 50.000 5.03 0.00 42.93 3.24
932 1962 3.397482 CCTTTGTCTCCACTCAAGACTG 58.603 50.000 5.03 0.00 42.93 3.51
933 1963 3.070159 CCTTTGTCTCCACTCAAGACTGA 59.930 47.826 5.03 0.00 42.93 3.41
934 1964 4.443457 CCTTTGTCTCCACTCAAGACTGAA 60.443 45.833 5.03 0.46 42.93 3.02
935 1965 3.735237 TGTCTCCACTCAAGACTGAAC 57.265 47.619 5.03 0.00 42.93 3.18
936 1966 2.365617 TGTCTCCACTCAAGACTGAACC 59.634 50.000 5.03 0.00 42.93 3.62
1197 2237 4.729918 CTCAGGGCCCAGCACCAC 62.730 72.222 27.56 0.00 28.43 4.16
1239 3381 0.344790 AGGTGGATGTGGAGGAGGAT 59.655 55.000 0.00 0.00 0.00 3.24
1248 3390 2.303022 TGTGGAGGAGGATCTTGTTCAC 59.697 50.000 0.00 0.00 33.73 3.18
1249 3391 2.303022 GTGGAGGAGGATCTTGTTCACA 59.697 50.000 0.00 0.00 33.73 3.58
1250 3392 2.568956 TGGAGGAGGATCTTGTTCACAG 59.431 50.000 0.00 0.00 33.73 3.66
1251 3393 2.626840 GAGGAGGATCTTGTTCACAGC 58.373 52.381 0.00 0.00 33.73 4.40
1252 3394 1.280421 AGGAGGATCTTGTTCACAGCC 59.720 52.381 0.00 0.00 33.73 4.85
1253 3395 1.680249 GGAGGATCTTGTTCACAGCCC 60.680 57.143 0.00 0.00 33.73 5.19
1254 3396 1.280421 GAGGATCTTGTTCACAGCCCT 59.720 52.381 0.00 0.00 0.00 5.19
1255 3397 1.707427 AGGATCTTGTTCACAGCCCTT 59.293 47.619 0.00 0.00 0.00 3.95
1256 3398 1.815003 GGATCTTGTTCACAGCCCTTG 59.185 52.381 0.00 0.00 0.00 3.61
1257 3399 2.508526 GATCTTGTTCACAGCCCTTGT 58.491 47.619 0.00 0.00 41.94 3.16
1289 3431 0.682855 AGTGAGAGGAAGCGGAGGAG 60.683 60.000 0.00 0.00 0.00 3.69
1321 3463 2.375766 CGTGTCGTCAAGCAGGAGC 61.376 63.158 0.00 0.00 42.56 4.70
1322 3464 1.300931 GTGTCGTCAAGCAGGAGCA 60.301 57.895 0.00 0.00 45.49 4.26
1323 3465 0.880278 GTGTCGTCAAGCAGGAGCAA 60.880 55.000 0.00 0.00 45.49 3.91
1324 3466 0.601046 TGTCGTCAAGCAGGAGCAAG 60.601 55.000 0.00 0.00 45.49 4.01
1325 3467 0.319900 GTCGTCAAGCAGGAGCAAGA 60.320 55.000 0.00 0.00 45.49 3.02
1326 3468 0.610174 TCGTCAAGCAGGAGCAAGAT 59.390 50.000 0.00 0.00 45.49 2.40
1327 3469 0.725686 CGTCAAGCAGGAGCAAGATG 59.274 55.000 0.00 0.00 45.49 2.90
1328 3470 1.818642 GTCAAGCAGGAGCAAGATGT 58.181 50.000 0.00 0.00 45.49 3.06
1329 3471 1.736681 GTCAAGCAGGAGCAAGATGTC 59.263 52.381 0.00 0.00 45.49 3.06
1330 3472 1.093159 CAAGCAGGAGCAAGATGTCC 58.907 55.000 0.00 0.00 45.49 4.02
1331 3473 0.034670 AAGCAGGAGCAAGATGTCCC 60.035 55.000 0.00 0.00 45.49 4.46
1332 3474 0.913451 AGCAGGAGCAAGATGTCCCT 60.913 55.000 0.00 0.00 45.49 4.20
1333 3475 0.034670 GCAGGAGCAAGATGTCCCTT 60.035 55.000 0.00 0.00 41.58 3.95
1334 3476 1.615384 GCAGGAGCAAGATGTCCCTTT 60.615 52.381 0.00 0.00 41.58 3.11
1335 3477 2.089980 CAGGAGCAAGATGTCCCTTTG 58.910 52.381 0.00 0.00 32.70 2.77
1336 3478 1.988107 AGGAGCAAGATGTCCCTTTGA 59.012 47.619 0.00 0.00 32.70 2.69
1337 3479 2.579860 AGGAGCAAGATGTCCCTTTGAT 59.420 45.455 0.00 0.00 32.70 2.57
1338 3480 2.948315 GGAGCAAGATGTCCCTTTGATC 59.052 50.000 0.00 0.00 0.00 2.92
1339 3481 2.948315 GAGCAAGATGTCCCTTTGATCC 59.052 50.000 0.00 0.00 0.00 3.36
1340 3482 2.309755 AGCAAGATGTCCCTTTGATCCA 59.690 45.455 0.00 0.00 0.00 3.41
1341 3483 3.091545 GCAAGATGTCCCTTTGATCCAA 58.908 45.455 0.00 0.00 0.00 3.53
1342 3484 3.119352 GCAAGATGTCCCTTTGATCCAAC 60.119 47.826 0.00 0.00 0.00 3.77
1343 3485 4.338879 CAAGATGTCCCTTTGATCCAACT 58.661 43.478 0.00 0.00 0.00 3.16
1344 3486 4.227864 AGATGTCCCTTTGATCCAACTC 57.772 45.455 0.00 0.00 0.00 3.01
1345 3487 2.879103 TGTCCCTTTGATCCAACTCC 57.121 50.000 0.00 0.00 0.00 3.85
1346 3488 2.061848 TGTCCCTTTGATCCAACTCCA 58.938 47.619 0.00 0.00 0.00 3.86
1347 3489 2.445145 TGTCCCTTTGATCCAACTCCAA 59.555 45.455 0.00 0.00 0.00 3.53
1348 3490 2.820197 GTCCCTTTGATCCAACTCCAAC 59.180 50.000 0.00 0.00 0.00 3.77
1349 3491 2.445145 TCCCTTTGATCCAACTCCAACA 59.555 45.455 0.00 0.00 0.00 3.33
1350 3492 2.821969 CCCTTTGATCCAACTCCAACAG 59.178 50.000 0.00 0.00 0.00 3.16
1407 3585 3.140144 TCAGTTTGGTTCCCAGGAAGAAT 59.860 43.478 0.00 0.00 33.81 2.40
1414 3592 4.849810 TGGTTCCCAGGAAGAATAAGAAGA 59.150 41.667 0.00 0.00 34.49 2.87
1417 3595 6.296489 GGTTCCCAGGAAGAATAAGAAGAAGA 60.296 42.308 0.00 0.00 34.49 2.87
1439 3620 3.103742 AGGAGGAGGAGAAAGACATCAC 58.896 50.000 0.00 0.00 0.00 3.06
1491 3672 2.437359 GAGCCGGAGCAGCACAAT 60.437 61.111 5.05 0.00 43.56 2.71
1552 3736 6.016777 GGTGAAGAAAGAAGAAGCTGATTTCA 60.017 38.462 0.00 0.00 33.36 2.69
1588 3772 2.028930 GGGAGCGACAAGAAGAAGAAGA 60.029 50.000 0.00 0.00 0.00 2.87
1589 3773 3.555168 GGGAGCGACAAGAAGAAGAAGAA 60.555 47.826 0.00 0.00 0.00 2.52
1590 3774 3.677596 GGAGCGACAAGAAGAAGAAGAAG 59.322 47.826 0.00 0.00 0.00 2.85
1591 3775 4.551388 GAGCGACAAGAAGAAGAAGAAGA 58.449 43.478 0.00 0.00 0.00 2.87
1628 3812 2.485582 CAGAGATGGCGACGACGT 59.514 61.111 9.33 0.00 41.98 4.34
1656 3858 4.292186 AGAAGCAGAGCATACCAAGAAA 57.708 40.909 0.00 0.00 0.00 2.52
1682 3884 5.921408 AGCAGCGCAAGTAGTAATAATACTC 59.079 40.000 11.47 0.00 39.70 2.59
1686 3888 7.324856 CAGCGCAAGTAGTAATAATACTCTCTG 59.675 40.741 11.47 0.00 39.70 3.35
1687 3889 6.583050 GCGCAAGTAGTAATAATACTCTCTGG 59.417 42.308 0.30 0.00 39.70 3.86
1688 3890 7.085116 CGCAAGTAGTAATAATACTCTCTGGG 58.915 42.308 0.64 1.69 41.49 4.45
1689 3891 7.040617 CGCAAGTAGTAATAATACTCTCTGGGA 60.041 40.741 0.64 0.00 41.49 4.37
1757 3959 3.084039 GCAAATGTGTCATGAGGAGGAA 58.916 45.455 0.00 0.00 0.00 3.36
1758 3960 3.128242 GCAAATGTGTCATGAGGAGGAAG 59.872 47.826 0.00 0.00 0.00 3.46
1759 3961 4.582869 CAAATGTGTCATGAGGAGGAAGA 58.417 43.478 0.00 0.00 0.00 2.87
1847 4055 9.778741 TTATTATTCTAGTACAATTGGAGGCTG 57.221 33.333 10.83 0.00 0.00 4.85
1869 4077 0.109342 AAAGACAGGCCACTCTGGTG 59.891 55.000 5.01 0.00 40.46 4.17
1889 4098 3.065371 GTGGACTCTGTTTTGTCTTGTGG 59.935 47.826 0.00 0.00 34.01 4.17
1895 4104 1.748493 TGTTTTGTCTTGTGGCACCTC 59.252 47.619 16.26 3.50 0.00 3.85
1922 4131 3.688694 ATGCAATGCCATTGTCTTGTT 57.311 38.095 18.10 0.00 42.20 2.83
1942 4151 9.160496 TCTTGTTGCAATGAAATTTACACTTTT 57.840 25.926 0.59 0.00 31.22 2.27
1943 4152 9.212687 CTTGTTGCAATGAAATTTACACTTTTG 57.787 29.630 0.59 0.00 31.22 2.44
1944 4153 7.185453 TGTTGCAATGAAATTTACACTTTTGC 58.815 30.769 0.59 14.11 31.22 3.68
1945 4154 7.065563 TGTTGCAATGAAATTTACACTTTTGCT 59.934 29.630 0.59 0.00 31.22 3.91
1946 4155 6.946165 TGCAATGAAATTTACACTTTTGCTG 58.054 32.000 17.93 0.00 31.22 4.41
1947 4156 6.538021 TGCAATGAAATTTACACTTTTGCTGT 59.462 30.769 17.93 0.00 31.22 4.40
1948 4157 7.065283 GCAATGAAATTTACACTTTTGCTGTC 58.935 34.615 13.91 0.00 31.22 3.51
1949 4158 7.566709 CAATGAAATTTACACTTTTGCTGTCC 58.433 34.615 0.00 0.00 31.22 4.02
1950 4159 5.596845 TGAAATTTACACTTTTGCTGTCCC 58.403 37.500 0.00 0.00 0.00 4.46
1951 4160 4.600692 AATTTACACTTTTGCTGTCCCC 57.399 40.909 0.00 0.00 0.00 4.81
1953 4162 2.270352 TACACTTTTGCTGTCCCCTG 57.730 50.000 0.00 0.00 0.00 4.45
1954 4163 0.550914 ACACTTTTGCTGTCCCCTGA 59.449 50.000 0.00 0.00 0.00 3.86
1955 4164 1.064017 ACACTTTTGCTGTCCCCTGAA 60.064 47.619 0.00 0.00 0.00 3.02
1956 4165 2.031120 CACTTTTGCTGTCCCCTGAAA 58.969 47.619 0.00 0.00 0.00 2.69
1957 4166 2.629617 CACTTTTGCTGTCCCCTGAAAT 59.370 45.455 0.00 0.00 0.00 2.17
1958 4167 2.629617 ACTTTTGCTGTCCCCTGAAATG 59.370 45.455 0.00 0.00 0.00 2.32
1959 4168 2.673775 TTTGCTGTCCCCTGAAATGA 57.326 45.000 0.00 0.00 0.00 2.57
1960 4169 2.905415 TTGCTGTCCCCTGAAATGAT 57.095 45.000 0.00 0.00 0.00 2.45
1961 4170 2.905415 TGCTGTCCCCTGAAATGATT 57.095 45.000 0.00 0.00 0.00 2.57
1962 4171 2.726821 TGCTGTCCCCTGAAATGATTC 58.273 47.619 0.00 0.00 36.04 2.52
1963 4172 2.041485 TGCTGTCCCCTGAAATGATTCA 59.959 45.455 0.00 0.00 43.18 2.57
1964 4173 2.424956 GCTGTCCCCTGAAATGATTCAC 59.575 50.000 0.00 0.00 40.59 3.18
1965 4174 3.875369 GCTGTCCCCTGAAATGATTCACT 60.875 47.826 0.00 0.00 40.59 3.41
1966 4175 4.626287 GCTGTCCCCTGAAATGATTCACTA 60.626 45.833 0.00 0.00 40.59 2.74
1967 4176 5.102953 TGTCCCCTGAAATGATTCACTAG 57.897 43.478 0.00 0.00 40.59 2.57
1968 4177 4.536090 TGTCCCCTGAAATGATTCACTAGT 59.464 41.667 0.00 0.00 40.59 2.57
1969 4178 5.014123 TGTCCCCTGAAATGATTCACTAGTT 59.986 40.000 0.00 0.00 40.59 2.24
1970 4179 5.946377 GTCCCCTGAAATGATTCACTAGTTT 59.054 40.000 0.00 0.00 40.59 2.66
1971 4180 6.094186 GTCCCCTGAAATGATTCACTAGTTTC 59.906 42.308 0.00 4.30 40.59 2.78
1972 4181 5.945784 CCCCTGAAATGATTCACTAGTTTCA 59.054 40.000 10.94 10.94 40.59 2.69
1973 4182 6.604795 CCCCTGAAATGATTCACTAGTTTCAT 59.395 38.462 11.56 0.00 40.59 2.57
1974 4183 7.775093 CCCCTGAAATGATTCACTAGTTTCATA 59.225 37.037 11.56 0.00 40.59 2.15
1975 4184 9.347240 CCCTGAAATGATTCACTAGTTTCATAT 57.653 33.333 11.56 3.01 40.59 1.78
1986 4195 9.534565 TTCACTAGTTTCATATTATGCTCACTC 57.465 33.333 0.00 0.00 0.00 3.51
1987 4196 8.918116 TCACTAGTTTCATATTATGCTCACTCT 58.082 33.333 0.00 0.00 0.00 3.24
1992 4201 8.700051 AGTTTCATATTATGCTCACTCTACTGT 58.300 33.333 0.00 0.00 0.00 3.55
1993 4202 9.319143 GTTTCATATTATGCTCACTCTACTGTT 57.681 33.333 0.00 0.00 0.00 3.16
1994 4203 9.890629 TTTCATATTATGCTCACTCTACTGTTT 57.109 29.630 0.00 0.00 0.00 2.83
1995 4204 8.877808 TCATATTATGCTCACTCTACTGTTTG 57.122 34.615 0.00 0.00 0.00 2.93
1996 4205 8.478066 TCATATTATGCTCACTCTACTGTTTGT 58.522 33.333 0.00 0.00 0.00 2.83
1997 4206 6.974932 ATTATGCTCACTCTACTGTTTGTG 57.025 37.500 0.00 0.00 0.00 3.33
2020 4229 4.319177 GCTTATGAGGATGTGTATGACCC 58.681 47.826 0.00 0.00 0.00 4.46
2021 4230 4.804261 GCTTATGAGGATGTGTATGACCCC 60.804 50.000 0.00 0.00 0.00 4.95
2023 4232 2.845659 TGAGGATGTGTATGACCCCTT 58.154 47.619 0.00 0.00 29.43 3.95
2024 4233 3.189606 TGAGGATGTGTATGACCCCTTT 58.810 45.455 0.00 0.00 29.43 3.11
2025 4234 3.054434 TGAGGATGTGTATGACCCCTTTG 60.054 47.826 0.00 0.00 29.43 2.77
2026 4235 2.919602 AGGATGTGTATGACCCCTTTGT 59.080 45.455 0.00 0.00 0.00 2.83
2027 4236 4.108570 AGGATGTGTATGACCCCTTTGTA 58.891 43.478 0.00 0.00 0.00 2.41
2028 4237 4.164221 AGGATGTGTATGACCCCTTTGTAG 59.836 45.833 0.00 0.00 0.00 2.74
2029 4238 4.080526 GGATGTGTATGACCCCTTTGTAGT 60.081 45.833 0.00 0.00 0.00 2.73
2030 4239 4.280436 TGTGTATGACCCCTTTGTAGTG 57.720 45.455 0.00 0.00 0.00 2.74
2031 4240 3.904965 TGTGTATGACCCCTTTGTAGTGA 59.095 43.478 0.00 0.00 0.00 3.41
2032 4241 4.348461 TGTGTATGACCCCTTTGTAGTGAA 59.652 41.667 0.00 0.00 0.00 3.18
2033 4242 5.163184 TGTGTATGACCCCTTTGTAGTGAAA 60.163 40.000 0.00 0.00 0.00 2.69
2082 4293 5.564550 ACAGGTGCCATATATGAGATTTCC 58.435 41.667 14.54 7.52 0.00 3.13
2083 4294 4.633126 CAGGTGCCATATATGAGATTTCCG 59.367 45.833 14.54 0.00 0.00 4.30
2095 4306 5.165961 TGAGATTTCCGACCTTCAGATTT 57.834 39.130 0.00 0.00 0.00 2.17
2155 4366 4.645535 TCAACTTCTTCTTAGTGCAGCAT 58.354 39.130 0.00 0.00 0.00 3.79
2156 4367 5.065914 TCAACTTCTTCTTAGTGCAGCATT 58.934 37.500 0.00 0.00 0.00 3.56
2157 4368 6.230472 TCAACTTCTTCTTAGTGCAGCATTA 58.770 36.000 0.00 0.00 0.00 1.90
2158 4369 6.881065 TCAACTTCTTCTTAGTGCAGCATTAT 59.119 34.615 0.00 0.00 0.00 1.28
2159 4370 7.391554 TCAACTTCTTCTTAGTGCAGCATTATT 59.608 33.333 0.00 0.00 0.00 1.40
2160 4371 7.081526 ACTTCTTCTTAGTGCAGCATTATTG 57.918 36.000 0.00 0.00 0.00 1.90
2161 4372 6.656693 ACTTCTTCTTAGTGCAGCATTATTGT 59.343 34.615 0.00 0.00 0.00 2.71
2162 4373 6.668541 TCTTCTTAGTGCAGCATTATTGTC 57.331 37.500 0.00 0.00 0.00 3.18
2163 4374 5.586243 TCTTCTTAGTGCAGCATTATTGTCC 59.414 40.000 0.00 0.00 0.00 4.02
2164 4375 5.102953 TCTTAGTGCAGCATTATTGTCCT 57.897 39.130 0.00 0.00 0.00 3.85
2165 4376 4.877823 TCTTAGTGCAGCATTATTGTCCTG 59.122 41.667 0.00 0.00 0.00 3.86
2166 4377 1.747355 AGTGCAGCATTATTGTCCTGC 59.253 47.619 0.00 4.65 38.20 4.85
2167 4378 1.747355 GTGCAGCATTATTGTCCTGCT 59.253 47.619 0.00 0.00 46.72 4.24
2168 4379 2.945008 GTGCAGCATTATTGTCCTGCTA 59.055 45.455 0.00 0.00 44.09 3.49
2169 4380 2.945008 TGCAGCATTATTGTCCTGCTAC 59.055 45.455 12.01 0.00 44.09 3.58
2199 4410 1.065199 CACCTGCCCTCTAATCAAGCA 60.065 52.381 0.00 0.00 0.00 3.91
2234 4445 4.178545 ACCAGCTGTGTGCAAAATAATC 57.821 40.909 13.81 0.00 45.94 1.75
2280 4636 9.973661 TTCATAGGTTCCTTCAAATTAGATTGA 57.026 29.630 0.00 0.00 37.53 2.57
2357 4935 7.222999 AGCATTATTAACTCGCTACTTGTCTTC 59.777 37.037 0.00 0.00 0.00 2.87
2429 5007 9.216117 ACCATGACTGTTATAAACTTCAGTAAC 57.784 33.333 6.47 0.00 40.53 2.50
2459 5048 1.546029 GGACCATGAGCCTGAAAAACC 59.454 52.381 0.00 0.00 0.00 3.27
2470 5059 2.159310 CCTGAAAAACCAACACGAGCAA 60.159 45.455 0.00 0.00 0.00 3.91
2471 5060 3.490761 CCTGAAAAACCAACACGAGCAAT 60.491 43.478 0.00 0.00 0.00 3.56
2472 5061 3.701241 TGAAAAACCAACACGAGCAATC 58.299 40.909 0.00 0.00 0.00 2.67
2473 5062 2.399396 AAAACCAACACGAGCAATCG 57.601 45.000 0.00 0.00 39.31 3.34
2474 5063 0.040425 AAACCAACACGAGCAATCGC 60.040 50.000 0.00 0.00 36.44 4.58
2486 5075 0.374758 GCAATCGCTTCGCTGATTCA 59.625 50.000 0.00 0.00 32.76 2.57
2516 5105 1.471287 TGCAGCTGATTCATTCTGTGC 59.529 47.619 20.43 0.00 34.28 4.57
2546 5135 7.383572 GCCTCAATAGTCATACACTGATAACTG 59.616 40.741 0.00 0.00 36.43 3.16
2607 5197 3.574826 ACCTGTCTGAGTAGTCAACCTTC 59.425 47.826 1.11 0.00 30.14 3.46
2608 5198 3.574396 CCTGTCTGAGTAGTCAACCTTCA 59.426 47.826 1.11 0.00 30.14 3.02
2612 5202 5.164954 GTCTGAGTAGTCAACCTTCACATC 58.835 45.833 1.11 0.00 30.14 3.06
2660 5276 9.696917 AAATATCAACTTTGCTGTTTTAAGAGG 57.303 29.630 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.485378 CACATAAGTTGGTGTTGTTTGCG 59.515 43.478 2.32 0.00 0.00 4.85
15 16 4.518970 GGACATCACATAAGTTGGTGTTGT 59.481 41.667 18.41 18.41 45.54 3.32
17 18 3.751175 CGGACATCACATAAGTTGGTGTT 59.249 43.478 8.71 0.11 36.43 3.32
19 20 3.334691 ACGGACATCACATAAGTTGGTG 58.665 45.455 3.77 3.77 36.36 4.17
37 38 3.641437 TCCTTTGCATTTTGAAGACGG 57.359 42.857 0.00 0.00 0.00 4.79
69 87 2.484264 CCACCAAAAACGAGACATCCTC 59.516 50.000 0.00 0.00 38.55 3.71
70 88 2.504367 CCACCAAAAACGAGACATCCT 58.496 47.619 0.00 0.00 0.00 3.24
71 89 1.539827 CCCACCAAAAACGAGACATCC 59.460 52.381 0.00 0.00 0.00 3.51
80 98 2.612721 GCATCATCACCCCACCAAAAAC 60.613 50.000 0.00 0.00 0.00 2.43
122 140 4.717877 ACACATCTTTCACCATGAGAACA 58.282 39.130 0.00 0.00 0.00 3.18
127 145 6.306643 TGGTATACACATCTTTCACCATGA 57.693 37.500 5.01 0.00 29.89 3.07
153 171 1.010170 AGCCCATACCTCCTTTCTCCT 59.990 52.381 0.00 0.00 0.00 3.69
154 172 1.512735 AGCCCATACCTCCTTTCTCC 58.487 55.000 0.00 0.00 0.00 3.71
155 173 2.505819 TGAAGCCCATACCTCCTTTCTC 59.494 50.000 0.00 0.00 0.00 2.87
156 174 2.507471 CTGAAGCCCATACCTCCTTTCT 59.493 50.000 0.00 0.00 0.00 2.52
157 175 2.422093 CCTGAAGCCCATACCTCCTTTC 60.422 54.545 0.00 0.00 0.00 2.62
211 233 6.210185 GGATTATCAATAAGATGCCAGGCTTT 59.790 38.462 14.15 7.29 37.57 3.51
239 261 9.941664 CTTTTAGGATAGTTGCACATAATGAAG 57.058 33.333 0.00 0.00 0.00 3.02
267 289 3.951775 AGCACTCAAGAGAACTACCTG 57.048 47.619 3.73 0.00 0.00 4.00
274 309 4.955811 TCCAAAGTAGCACTCAAGAGAA 57.044 40.909 3.73 0.00 0.00 2.87
347 1376 7.279758 TGAAAGAATCATATAATGTGTCGCACA 59.720 33.333 13.63 13.63 40.00 4.57
349 1378 7.279758 TGTGAAAGAATCATATAATGTGTCGCA 59.720 33.333 0.00 0.00 40.97 5.10
350 1379 7.630026 TGTGAAAGAATCATATAATGTGTCGC 58.370 34.615 0.00 0.00 40.97 5.19
351 1380 7.795734 GCTGTGAAAGAATCATATAATGTGTCG 59.204 37.037 0.00 0.00 40.97 4.35
352 1381 7.795734 CGCTGTGAAAGAATCATATAATGTGTC 59.204 37.037 0.00 0.00 40.97 3.67
354 1383 7.041848 TCCGCTGTGAAAGAATCATATAATGTG 60.042 37.037 0.00 0.00 40.97 3.21
355 1384 6.992123 TCCGCTGTGAAAGAATCATATAATGT 59.008 34.615 0.00 0.00 40.97 2.71
357 1386 7.308229 GCTTCCGCTGTGAAAGAATCATATAAT 60.308 37.037 0.00 0.00 40.97 1.28
358 1387 6.017934 GCTTCCGCTGTGAAAGAATCATATAA 60.018 38.462 0.00 0.00 40.97 0.98
359 1388 5.466728 GCTTCCGCTGTGAAAGAATCATATA 59.533 40.000 0.00 0.00 40.97 0.86
360 1389 4.274459 GCTTCCGCTGTGAAAGAATCATAT 59.726 41.667 0.00 0.00 40.97 1.78
378 1407 1.911057 ACCTAACTGCCAAAGCTTCC 58.089 50.000 0.00 0.00 40.80 3.46
437 1467 0.109919 TCGAGTTGATCACGACACGG 60.110 55.000 14.58 1.75 42.02 4.94
438 1468 3.378013 TCGAGTTGATCACGACACG 57.622 52.632 10.08 10.08 42.70 4.49
455 1485 3.007973 GCCTCCAGACTGTCCGGTC 62.008 68.421 9.76 0.00 36.56 4.79
456 1486 2.997897 GCCTCCAGACTGTCCGGT 60.998 66.667 9.76 0.00 0.00 5.28
457 1487 2.997315 TGCCTCCAGACTGTCCGG 60.997 66.667 3.57 3.57 0.00 5.14
458 1488 0.965866 TACTGCCTCCAGACTGTCCG 60.966 60.000 3.76 0.00 41.77 4.79
473 1503 3.806521 GCCATGTCTCATAGCTTGTACTG 59.193 47.826 0.00 0.00 0.00 2.74
478 1508 4.579340 AGAATTGCCATGTCTCATAGCTTG 59.421 41.667 0.00 0.00 0.00 4.01
484 1514 4.334759 CGAAGAAGAATTGCCATGTCTCAT 59.665 41.667 0.00 0.00 0.00 2.90
490 1520 2.159338 CCACCGAAGAAGAATTGCCATG 60.159 50.000 0.00 0.00 0.00 3.66
507 1537 0.249996 AATTGTGCTTGCTTGCCACC 60.250 50.000 0.00 0.00 0.00 4.61
544 1574 5.712152 AATGATTAAAATCCGAGGGCATC 57.288 39.130 0.41 0.00 34.50 3.91
617 1647 7.610692 AGGAGGACAAAATTTAACTAGCCTAAC 59.389 37.037 0.00 0.00 0.00 2.34
618 1648 7.696017 AGGAGGACAAAATTTAACTAGCCTAA 58.304 34.615 0.00 0.00 0.00 2.69
636 1666 4.503714 TCCATCCATACAAAAGGAGGAC 57.496 45.455 0.00 0.00 37.90 3.85
645 1675 3.643320 AGCTCTCGAATCCATCCATACAA 59.357 43.478 0.00 0.00 0.00 2.41
660 1690 3.184683 GCACCTTCGCAGCTCTCG 61.185 66.667 0.00 0.00 0.00 4.04
662 1692 1.375268 GAAGCACCTTCGCAGCTCT 60.375 57.895 0.00 0.00 37.70 4.09
663 1693 1.230635 TTGAAGCACCTTCGCAGCTC 61.231 55.000 0.00 0.00 42.78 4.09
665 1695 0.242017 AATTGAAGCACCTTCGCAGC 59.758 50.000 1.07 0.00 42.78 5.25
670 1700 6.861572 GGTTTACAAGTAATTGAAGCACCTTC 59.138 38.462 10.35 0.00 40.54 3.46
671 1701 6.322712 TGGTTTACAAGTAATTGAAGCACCTT 59.677 34.615 10.35 0.00 0.00 3.50
676 1706 6.308766 CAGCATGGTTTACAAGTAATTGAAGC 59.691 38.462 10.35 4.88 0.00 3.86
681 1711 4.380444 CCGCAGCATGGTTTACAAGTAATT 60.380 41.667 0.00 0.00 35.86 1.40
695 1725 0.804364 TCTAGCAAAACCGCAGCATG 59.196 50.000 0.00 0.00 40.87 4.06
700 1730 2.489938 ATTCCTCTAGCAAAACCGCA 57.510 45.000 0.00 0.00 0.00 5.69
701 1731 4.201920 CCTTTATTCCTCTAGCAAAACCGC 60.202 45.833 0.00 0.00 0.00 5.68
703 1733 5.590663 CCTCCTTTATTCCTCTAGCAAAACC 59.409 44.000 0.00 0.00 0.00 3.27
704 1734 6.415573 TCCTCCTTTATTCCTCTAGCAAAAC 58.584 40.000 0.00 0.00 0.00 2.43
745 1775 4.466015 ACCTTTATGCCACCGATGATTTTT 59.534 37.500 0.00 0.00 0.00 1.94
746 1776 4.023291 ACCTTTATGCCACCGATGATTTT 58.977 39.130 0.00 0.00 0.00 1.82
747 1777 3.631250 ACCTTTATGCCACCGATGATTT 58.369 40.909 0.00 0.00 0.00 2.17
748 1778 3.297134 ACCTTTATGCCACCGATGATT 57.703 42.857 0.00 0.00 0.00 2.57
749 1779 3.297134 AACCTTTATGCCACCGATGAT 57.703 42.857 0.00 0.00 0.00 2.45
750 1780 2.799126 AACCTTTATGCCACCGATGA 57.201 45.000 0.00 0.00 0.00 2.92
751 1781 3.866883 AAAACCTTTATGCCACCGATG 57.133 42.857 0.00 0.00 0.00 3.84
803 1833 4.148838 CACCCCTGTGATTCCTACAAAAA 58.851 43.478 0.00 0.00 45.76 1.94
804 1834 3.139397 ACACCCCTGTGATTCCTACAAAA 59.861 43.478 0.00 0.00 45.76 2.44
805 1835 2.714250 ACACCCCTGTGATTCCTACAAA 59.286 45.455 0.00 0.00 45.76 2.83
806 1836 2.344592 ACACCCCTGTGATTCCTACAA 58.655 47.619 0.00 0.00 45.76 2.41
807 1837 2.038863 ACACCCCTGTGATTCCTACA 57.961 50.000 0.00 0.00 45.76 2.74
808 1838 3.434940 AAACACCCCTGTGATTCCTAC 57.565 47.619 0.00 0.00 45.76 3.18
809 1839 4.172807 ACTAAACACCCCTGTGATTCCTA 58.827 43.478 0.00 0.00 45.76 2.94
810 1840 2.986728 ACTAAACACCCCTGTGATTCCT 59.013 45.455 0.00 0.00 45.76 3.36
811 1841 3.434940 ACTAAACACCCCTGTGATTCC 57.565 47.619 0.00 0.00 45.76 3.01
812 1842 3.506067 CCAACTAAACACCCCTGTGATTC 59.494 47.826 0.00 0.00 45.76 2.52
813 1843 3.139397 TCCAACTAAACACCCCTGTGATT 59.861 43.478 0.00 0.00 45.76 2.57
814 1844 2.714250 TCCAACTAAACACCCCTGTGAT 59.286 45.455 0.00 0.00 45.76 3.06
815 1845 2.128535 TCCAACTAAACACCCCTGTGA 58.871 47.619 0.00 0.00 45.76 3.58
817 1847 1.144298 GGTCCAACTAAACACCCCTGT 59.856 52.381 0.00 0.00 0.00 4.00
818 1848 1.880646 CGGTCCAACTAAACACCCCTG 60.881 57.143 0.00 0.00 0.00 4.45
819 1849 0.399075 CGGTCCAACTAAACACCCCT 59.601 55.000 0.00 0.00 0.00 4.79
820 1850 0.109153 ACGGTCCAACTAAACACCCC 59.891 55.000 0.00 0.00 0.00 4.95
821 1851 2.037641 ACTACGGTCCAACTAAACACCC 59.962 50.000 0.00 0.00 0.00 4.61
822 1852 3.391506 ACTACGGTCCAACTAAACACC 57.608 47.619 0.00 0.00 0.00 4.16
823 1853 5.532557 ACTTACTACGGTCCAACTAAACAC 58.467 41.667 0.00 0.00 0.00 3.32
824 1854 5.789643 ACTTACTACGGTCCAACTAAACA 57.210 39.130 0.00 0.00 0.00 2.83
825 1855 8.763049 AAATACTTACTACGGTCCAACTAAAC 57.237 34.615 0.00 0.00 0.00 2.01
826 1856 9.206870 CAAAATACTTACTACGGTCCAACTAAA 57.793 33.333 0.00 0.00 0.00 1.85
827 1857 8.367156 ACAAAATACTTACTACGGTCCAACTAA 58.633 33.333 0.00 0.00 0.00 2.24
828 1858 7.814107 CACAAAATACTTACTACGGTCCAACTA 59.186 37.037 0.00 0.00 0.00 2.24
829 1859 6.647895 CACAAAATACTTACTACGGTCCAACT 59.352 38.462 0.00 0.00 0.00 3.16
830 1860 6.128472 CCACAAAATACTTACTACGGTCCAAC 60.128 42.308 0.00 0.00 0.00 3.77
831 1861 5.933463 CCACAAAATACTTACTACGGTCCAA 59.067 40.000 0.00 0.00 0.00 3.53
832 1862 5.481105 CCACAAAATACTTACTACGGTCCA 58.519 41.667 0.00 0.00 0.00 4.02
833 1863 4.872124 CCCACAAAATACTTACTACGGTCC 59.128 45.833 0.00 0.00 0.00 4.46
834 1864 4.330894 GCCCACAAAATACTTACTACGGTC 59.669 45.833 0.00 0.00 0.00 4.79
835 1865 4.019950 AGCCCACAAAATACTTACTACGGT 60.020 41.667 0.00 0.00 0.00 4.83
836 1866 4.331717 CAGCCCACAAAATACTTACTACGG 59.668 45.833 0.00 0.00 0.00 4.02
837 1867 4.201783 GCAGCCCACAAAATACTTACTACG 60.202 45.833 0.00 0.00 0.00 3.51
838 1868 4.201783 CGCAGCCCACAAAATACTTACTAC 60.202 45.833 0.00 0.00 0.00 2.73
839 1869 3.936453 CGCAGCCCACAAAATACTTACTA 59.064 43.478 0.00 0.00 0.00 1.82
840 1870 2.747446 CGCAGCCCACAAAATACTTACT 59.253 45.455 0.00 0.00 0.00 2.24
841 1871 2.159435 CCGCAGCCCACAAAATACTTAC 60.159 50.000 0.00 0.00 0.00 2.34
842 1872 2.088423 CCGCAGCCCACAAAATACTTA 58.912 47.619 0.00 0.00 0.00 2.24
843 1873 0.887933 CCGCAGCCCACAAAATACTT 59.112 50.000 0.00 0.00 0.00 2.24
844 1874 1.595093 GCCGCAGCCCACAAAATACT 61.595 55.000 0.00 0.00 0.00 2.12
845 1875 1.153842 GCCGCAGCCCACAAAATAC 60.154 57.895 0.00 0.00 0.00 1.89
846 1876 3.283303 GCCGCAGCCCACAAAATA 58.717 55.556 0.00 0.00 0.00 1.40
862 1892 1.347243 ATGGGGATGGCATTTTGGGC 61.347 55.000 0.00 0.00 0.00 5.36
863 1893 0.760572 GATGGGGATGGCATTTTGGG 59.239 55.000 0.00 0.00 0.00 4.12
864 1894 0.760572 GGATGGGGATGGCATTTTGG 59.239 55.000 0.00 0.00 0.00 3.28
865 1895 1.797320 AGGATGGGGATGGCATTTTG 58.203 50.000 0.00 0.00 0.00 2.44
866 1896 3.704545 TTAGGATGGGGATGGCATTTT 57.295 42.857 0.00 0.00 0.00 1.82
867 1897 3.704545 TTTAGGATGGGGATGGCATTT 57.295 42.857 0.00 0.00 0.00 2.32
868 1898 3.308401 GTTTTAGGATGGGGATGGCATT 58.692 45.455 0.00 0.00 0.00 3.56
869 1899 2.426268 GGTTTTAGGATGGGGATGGCAT 60.426 50.000 0.00 0.00 0.00 4.40
870 1900 1.063266 GGTTTTAGGATGGGGATGGCA 60.063 52.381 0.00 0.00 0.00 4.92
871 1901 1.063266 TGGTTTTAGGATGGGGATGGC 60.063 52.381 0.00 0.00 0.00 4.40
872 1902 3.031013 GTTGGTTTTAGGATGGGGATGG 58.969 50.000 0.00 0.00 0.00 3.51
873 1903 3.031013 GGTTGGTTTTAGGATGGGGATG 58.969 50.000 0.00 0.00 0.00 3.51
874 1904 2.657459 TGGTTGGTTTTAGGATGGGGAT 59.343 45.455 0.00 0.00 0.00 3.85
875 1905 2.074579 TGGTTGGTTTTAGGATGGGGA 58.925 47.619 0.00 0.00 0.00 4.81
876 1906 2.565391 GTTGGTTGGTTTTAGGATGGGG 59.435 50.000 0.00 0.00 0.00 4.96
877 1907 2.565391 GGTTGGTTGGTTTTAGGATGGG 59.435 50.000 0.00 0.00 0.00 4.00
878 1908 2.565391 GGGTTGGTTGGTTTTAGGATGG 59.435 50.000 0.00 0.00 0.00 3.51
879 1909 3.235200 TGGGTTGGTTGGTTTTAGGATG 58.765 45.455 0.00 0.00 0.00 3.51
880 1910 3.621682 TGGGTTGGTTGGTTTTAGGAT 57.378 42.857 0.00 0.00 0.00 3.24
881 1911 3.032459 GTTGGGTTGGTTGGTTTTAGGA 58.968 45.455 0.00 0.00 0.00 2.94
882 1912 2.103432 GGTTGGGTTGGTTGGTTTTAGG 59.897 50.000 0.00 0.00 0.00 2.69
883 1913 2.103432 GGGTTGGGTTGGTTGGTTTTAG 59.897 50.000 0.00 0.00 0.00 1.85
884 1914 2.117051 GGGTTGGGTTGGTTGGTTTTA 58.883 47.619 0.00 0.00 0.00 1.52
885 1915 0.913205 GGGTTGGGTTGGTTGGTTTT 59.087 50.000 0.00 0.00 0.00 2.43
886 1916 0.043485 AGGGTTGGGTTGGTTGGTTT 59.957 50.000 0.00 0.00 0.00 3.27
887 1917 0.935194 TAGGGTTGGGTTGGTTGGTT 59.065 50.000 0.00 0.00 0.00 3.67
888 1918 0.481128 CTAGGGTTGGGTTGGTTGGT 59.519 55.000 0.00 0.00 0.00 3.67
889 1919 0.898326 GCTAGGGTTGGGTTGGTTGG 60.898 60.000 0.00 0.00 0.00 3.77
890 1920 0.898326 GGCTAGGGTTGGGTTGGTTG 60.898 60.000 0.00 0.00 0.00 3.77
891 1921 1.463375 GGCTAGGGTTGGGTTGGTT 59.537 57.895 0.00 0.00 0.00 3.67
892 1922 2.544745 GGGCTAGGGTTGGGTTGGT 61.545 63.158 0.00 0.00 0.00 3.67
893 1923 2.359011 GGGCTAGGGTTGGGTTGG 59.641 66.667 0.00 0.00 0.00 3.77
894 1924 2.359011 GGGGCTAGGGTTGGGTTG 59.641 66.667 0.00 0.00 0.00 3.77
895 1925 2.944954 GGGGGCTAGGGTTGGGTT 60.945 66.667 0.00 0.00 0.00 4.11
896 1926 3.533717 AAGGGGGCTAGGGTTGGGT 62.534 63.158 0.00 0.00 0.00 4.51
897 1927 2.246126 AAAGGGGGCTAGGGTTGGG 61.246 63.158 0.00 0.00 0.00 4.12
898 1928 1.000359 CAAAGGGGGCTAGGGTTGG 60.000 63.158 0.00 0.00 0.00 3.77
899 1929 0.323451 GACAAAGGGGGCTAGGGTTG 60.323 60.000 0.00 0.00 0.00 3.77
900 1930 0.477795 AGACAAAGGGGGCTAGGGTT 60.478 55.000 0.00 0.00 0.00 4.11
901 1931 0.914902 GAGACAAAGGGGGCTAGGGT 60.915 60.000 0.00 0.00 0.00 4.34
902 1932 1.636769 GGAGACAAAGGGGGCTAGGG 61.637 65.000 0.00 0.00 0.00 3.53
903 1933 0.914417 TGGAGACAAAGGGGGCTAGG 60.914 60.000 0.00 0.00 37.44 3.02
904 1934 0.253327 GTGGAGACAAAGGGGGCTAG 59.747 60.000 0.00 0.00 46.06 3.42
905 1935 0.178873 AGTGGAGACAAAGGGGGCTA 60.179 55.000 0.00 0.00 46.06 3.93
906 1936 1.464198 AGTGGAGACAAAGGGGGCT 60.464 57.895 0.00 0.00 46.06 5.19
907 1937 1.002011 GAGTGGAGACAAAGGGGGC 60.002 63.158 0.00 0.00 46.06 5.80
908 1938 0.771127 TTGAGTGGAGACAAAGGGGG 59.229 55.000 0.00 0.00 46.06 5.40
909 1939 1.699634 TCTTGAGTGGAGACAAAGGGG 59.300 52.381 0.00 0.00 46.06 4.79
910 1940 2.370189 AGTCTTGAGTGGAGACAAAGGG 59.630 50.000 6.98 0.00 44.65 3.95
911 1941 3.070159 TCAGTCTTGAGTGGAGACAAAGG 59.930 47.826 6.98 0.00 44.65 3.11
912 1942 4.327982 TCAGTCTTGAGTGGAGACAAAG 57.672 45.455 6.98 0.00 44.65 2.77
913 1943 4.442706 GTTCAGTCTTGAGTGGAGACAAA 58.557 43.478 6.98 0.00 44.65 2.83
914 1944 3.181465 GGTTCAGTCTTGAGTGGAGACAA 60.181 47.826 6.98 0.00 44.65 3.18
915 1945 2.365617 GGTTCAGTCTTGAGTGGAGACA 59.634 50.000 6.98 0.00 44.65 3.41
916 1946 2.365617 TGGTTCAGTCTTGAGTGGAGAC 59.634 50.000 5.72 0.00 42.99 3.36
917 1947 2.677914 TGGTTCAGTCTTGAGTGGAGA 58.322 47.619 5.72 0.00 34.15 3.71
918 1948 3.134458 GTTGGTTCAGTCTTGAGTGGAG 58.866 50.000 5.72 0.00 34.15 3.86
919 1949 2.158813 GGTTGGTTCAGTCTTGAGTGGA 60.159 50.000 5.72 0.00 34.15 4.02
920 1950 2.222027 GGTTGGTTCAGTCTTGAGTGG 58.778 52.381 5.72 0.00 34.15 4.00
921 1951 2.917933 TGGTTGGTTCAGTCTTGAGTG 58.082 47.619 0.00 0.00 34.15 3.51
922 1952 3.279434 GTTGGTTGGTTCAGTCTTGAGT 58.721 45.455 0.00 0.00 34.15 3.41
923 1953 2.618709 GGTTGGTTGGTTCAGTCTTGAG 59.381 50.000 0.00 0.00 34.15 3.02
924 1954 2.025793 TGGTTGGTTGGTTCAGTCTTGA 60.026 45.455 0.00 0.00 0.00 3.02
925 1955 2.374184 TGGTTGGTTGGTTCAGTCTTG 58.626 47.619 0.00 0.00 0.00 3.02
926 1956 2.758423 GTTGGTTGGTTGGTTCAGTCTT 59.242 45.455 0.00 0.00 0.00 3.01
927 1957 2.375146 GTTGGTTGGTTGGTTCAGTCT 58.625 47.619 0.00 0.00 0.00 3.24
928 1958 1.407618 GGTTGGTTGGTTGGTTCAGTC 59.592 52.381 0.00 0.00 0.00 3.51
929 1959 1.272760 TGGTTGGTTGGTTGGTTCAGT 60.273 47.619 0.00 0.00 0.00 3.41
930 1960 1.479709 TGGTTGGTTGGTTGGTTCAG 58.520 50.000 0.00 0.00 0.00 3.02
931 1961 1.827969 CTTGGTTGGTTGGTTGGTTCA 59.172 47.619 0.00 0.00 0.00 3.18
932 1962 1.472552 GCTTGGTTGGTTGGTTGGTTC 60.473 52.381 0.00 0.00 0.00 3.62
933 1963 0.539518 GCTTGGTTGGTTGGTTGGTT 59.460 50.000 0.00 0.00 0.00 3.67
934 1964 0.616111 TGCTTGGTTGGTTGGTTGGT 60.616 50.000 0.00 0.00 0.00 3.67
935 1965 0.104671 CTGCTTGGTTGGTTGGTTGG 59.895 55.000 0.00 0.00 0.00 3.77
936 1966 0.530431 GCTGCTTGGTTGGTTGGTTG 60.530 55.000 0.00 0.00 0.00 3.77
1197 2237 1.669115 CTTGACCTCGTGCTGGTGG 60.669 63.158 0.00 0.00 38.03 4.61
1203 2243 0.951040 CCTTCACCTTGACCTCGTGC 60.951 60.000 0.00 0.00 0.00 5.34
1262 3404 2.849120 CTTCCTCTCACTGGCGGCAG 62.849 65.000 34.75 34.75 0.00 4.85
1263 3405 2.922503 TTCCTCTCACTGGCGGCA 60.923 61.111 12.58 12.58 0.00 5.69
1264 3406 2.125350 CTTCCTCTCACTGGCGGC 60.125 66.667 0.00 0.00 0.00 6.53
1265 3407 2.125350 GCTTCCTCTCACTGGCGG 60.125 66.667 0.00 0.00 0.00 6.13
1266 3408 2.507992 CGCTTCCTCTCACTGGCG 60.508 66.667 0.00 0.00 36.89 5.69
1267 3409 2.125350 CCGCTTCCTCTCACTGGC 60.125 66.667 0.00 0.00 0.00 4.85
1268 3410 1.515020 CTCCGCTTCCTCTCACTGG 59.485 63.158 0.00 0.00 0.00 4.00
1289 3431 1.004440 ACACGCCTCTCTTCCTTGC 60.004 57.895 0.00 0.00 0.00 4.01
1321 3463 4.338879 AGTTGGATCAAAGGGACATCTTG 58.661 43.478 0.00 0.00 0.00 3.02
1322 3464 4.568592 GGAGTTGGATCAAAGGGACATCTT 60.569 45.833 0.00 0.00 0.00 2.40
1323 3465 3.054065 GGAGTTGGATCAAAGGGACATCT 60.054 47.826 0.00 0.00 0.00 2.90
1324 3466 3.282885 GGAGTTGGATCAAAGGGACATC 58.717 50.000 0.00 0.00 0.00 3.06
1325 3467 2.649312 TGGAGTTGGATCAAAGGGACAT 59.351 45.455 0.00 0.00 0.00 3.06
1326 3468 2.061848 TGGAGTTGGATCAAAGGGACA 58.938 47.619 0.00 0.00 0.00 4.02
1327 3469 2.820197 GTTGGAGTTGGATCAAAGGGAC 59.180 50.000 0.00 0.00 0.00 4.46
1328 3470 2.445145 TGTTGGAGTTGGATCAAAGGGA 59.555 45.455 0.00 0.00 0.00 4.20
1329 3471 2.821969 CTGTTGGAGTTGGATCAAAGGG 59.178 50.000 0.00 0.00 0.00 3.95
1330 3472 2.821969 CCTGTTGGAGTTGGATCAAAGG 59.178 50.000 0.00 0.00 34.57 3.11
1331 3473 3.754965 TCCTGTTGGAGTTGGATCAAAG 58.245 45.455 0.00 0.00 37.46 2.77
1332 3474 3.874383 TCCTGTTGGAGTTGGATCAAA 57.126 42.857 0.00 0.00 37.46 2.69
1343 3485 3.003173 CCGCCTCCTCCTGTTGGA 61.003 66.667 0.00 0.00 40.69 3.53
1344 3486 4.785453 GCCGCCTCCTCCTGTTGG 62.785 72.222 0.00 0.00 0.00 3.77
1407 3585 5.538082 TCTCCTCCTCCTTCTTCTTCTTA 57.462 43.478 0.00 0.00 0.00 2.10
1414 3592 3.863086 TGTCTTTCTCCTCCTCCTTCTT 58.137 45.455 0.00 0.00 0.00 2.52
1417 3595 3.517500 GTGATGTCTTTCTCCTCCTCCTT 59.482 47.826 0.00 0.00 0.00 3.36
1439 3620 0.106868 TGCCTCCTGCTTGATGATGG 60.107 55.000 0.00 0.00 42.00 3.51
1491 3672 1.089481 CGGCATGCTTCCGCTTCTTA 61.089 55.000 18.92 0.00 40.46 2.10
1588 3772 5.888161 TGCTCCTCTTGTTTTTCTTCTTCTT 59.112 36.000 0.00 0.00 0.00 2.52
1589 3773 5.440610 TGCTCCTCTTGTTTTTCTTCTTCT 58.559 37.500 0.00 0.00 0.00 2.85
1590 3774 5.529060 TCTGCTCCTCTTGTTTTTCTTCTTC 59.471 40.000 0.00 0.00 0.00 2.87
1591 3775 5.440610 TCTGCTCCTCTTGTTTTTCTTCTT 58.559 37.500 0.00 0.00 0.00 2.52
1628 3812 3.369892 GGTATGCTCTGCTTCTTCTTGGA 60.370 47.826 0.00 0.00 0.00 3.53
1656 3858 6.761714 AGTATTATTACTACTTGCGCTGCTTT 59.238 34.615 9.73 0.00 36.89 3.51
1682 3884 2.255770 AACTAACCTCCCTCCCAGAG 57.744 55.000 0.00 0.00 0.00 3.35
1686 3888 1.489649 GCCTAAACTAACCTCCCTCCC 59.510 57.143 0.00 0.00 0.00 4.30
1687 3889 1.489649 GGCCTAAACTAACCTCCCTCC 59.510 57.143 0.00 0.00 0.00 4.30
1688 3890 2.479340 AGGCCTAAACTAACCTCCCTC 58.521 52.381 1.29 0.00 0.00 4.30
1689 3891 2.576648 CAAGGCCTAAACTAACCTCCCT 59.423 50.000 5.16 0.00 0.00 4.20
1782 3984 2.301870 ACAGCTAAATCAACCTCACCGA 59.698 45.455 0.00 0.00 0.00 4.69
1847 4055 2.224548 ACCAGAGTGGCCTGTCTTTAAC 60.225 50.000 3.32 0.00 42.67 2.01
1869 4077 2.033424 GCCACAAGACAAAACAGAGTCC 59.967 50.000 0.00 0.00 35.38 3.85
1889 4098 3.314553 GCATTGCATAATGATGAGGTGC 58.685 45.455 3.15 0.00 45.21 5.01
1895 4104 5.538118 AGACAATGGCATTGCATAATGATG 58.462 37.500 33.90 12.71 45.21 3.07
1922 4131 6.538021 ACAGCAAAAGTGTAAATTTCATTGCA 59.462 30.769 18.66 0.00 37.54 4.08
1934 4143 1.771854 TCAGGGGACAGCAAAAGTGTA 59.228 47.619 0.00 0.00 0.00 2.90
1935 4144 0.550914 TCAGGGGACAGCAAAAGTGT 59.449 50.000 0.00 0.00 0.00 3.55
1936 4145 1.691196 TTCAGGGGACAGCAAAAGTG 58.309 50.000 0.00 0.00 0.00 3.16
1942 4151 2.041485 TGAATCATTTCAGGGGACAGCA 59.959 45.455 0.00 0.00 36.94 4.41
1943 4152 2.424956 GTGAATCATTTCAGGGGACAGC 59.575 50.000 0.00 0.00 42.41 4.40
1944 4153 3.960571 AGTGAATCATTTCAGGGGACAG 58.039 45.455 0.00 0.00 42.41 3.51
1945 4154 4.536090 ACTAGTGAATCATTTCAGGGGACA 59.464 41.667 0.00 0.00 42.41 4.02
1946 4155 5.104259 ACTAGTGAATCATTTCAGGGGAC 57.896 43.478 0.00 0.00 42.41 4.46
1947 4156 5.779241 AACTAGTGAATCATTTCAGGGGA 57.221 39.130 0.00 0.00 42.41 4.81
1948 4157 5.945784 TGAAACTAGTGAATCATTTCAGGGG 59.054 40.000 0.00 0.00 42.41 4.79
1949 4158 7.636150 ATGAAACTAGTGAATCATTTCAGGG 57.364 36.000 13.10 0.00 42.41 4.45
1960 4169 9.534565 GAGTGAGCATAATATGAAACTAGTGAA 57.465 33.333 4.14 0.00 0.00 3.18
1961 4170 8.918116 AGAGTGAGCATAATATGAAACTAGTGA 58.082 33.333 4.14 0.00 0.00 3.41
1966 4175 8.700051 ACAGTAGAGTGAGCATAATATGAAACT 58.300 33.333 4.14 3.82 0.00 2.66
1967 4176 8.879342 ACAGTAGAGTGAGCATAATATGAAAC 57.121 34.615 4.14 0.00 0.00 2.78
1968 4177 9.890629 AAACAGTAGAGTGAGCATAATATGAAA 57.109 29.630 4.14 0.00 0.00 2.69
1969 4178 9.317936 CAAACAGTAGAGTGAGCATAATATGAA 57.682 33.333 4.14 0.00 0.00 2.57
1970 4179 8.478066 ACAAACAGTAGAGTGAGCATAATATGA 58.522 33.333 4.14 0.00 0.00 2.15
1971 4180 8.546244 CACAAACAGTAGAGTGAGCATAATATG 58.454 37.037 0.00 0.00 33.99 1.78
1972 4181 7.712639 CCACAAACAGTAGAGTGAGCATAATAT 59.287 37.037 0.00 0.00 33.99 1.28
1973 4182 7.041721 CCACAAACAGTAGAGTGAGCATAATA 58.958 38.462 0.00 0.00 33.99 0.98
1974 4183 5.877012 CCACAAACAGTAGAGTGAGCATAAT 59.123 40.000 0.00 0.00 33.99 1.28
1975 4184 5.237815 CCACAAACAGTAGAGTGAGCATAA 58.762 41.667 0.00 0.00 33.99 1.90
1976 4185 4.820897 CCACAAACAGTAGAGTGAGCATA 58.179 43.478 0.00 0.00 33.99 3.14
1977 4186 3.668447 CCACAAACAGTAGAGTGAGCAT 58.332 45.455 0.00 0.00 33.99 3.79
1978 4187 2.806745 GCCACAAACAGTAGAGTGAGCA 60.807 50.000 0.00 0.00 33.99 4.26
1979 4188 1.801178 GCCACAAACAGTAGAGTGAGC 59.199 52.381 0.00 0.00 33.99 4.26
1980 4189 3.393089 AGCCACAAACAGTAGAGTGAG 57.607 47.619 0.00 0.00 33.99 3.51
1981 4190 3.838244 AAGCCACAAACAGTAGAGTGA 57.162 42.857 0.00 0.00 33.99 3.41
1982 4191 5.237815 TCATAAGCCACAAACAGTAGAGTG 58.762 41.667 0.00 0.00 0.00 3.51
1983 4192 5.482908 CTCATAAGCCACAAACAGTAGAGT 58.517 41.667 0.00 0.00 0.00 3.24
1984 4193 4.872691 CCTCATAAGCCACAAACAGTAGAG 59.127 45.833 0.00 0.00 0.00 2.43
1985 4194 4.530553 TCCTCATAAGCCACAAACAGTAGA 59.469 41.667 0.00 0.00 0.00 2.59
1986 4195 4.832248 TCCTCATAAGCCACAAACAGTAG 58.168 43.478 0.00 0.00 0.00 2.57
1987 4196 4.901197 TCCTCATAAGCCACAAACAGTA 57.099 40.909 0.00 0.00 0.00 2.74
1988 4197 3.788227 TCCTCATAAGCCACAAACAGT 57.212 42.857 0.00 0.00 0.00 3.55
1989 4198 4.012374 ACATCCTCATAAGCCACAAACAG 58.988 43.478 0.00 0.00 0.00 3.16
1990 4199 3.758023 CACATCCTCATAAGCCACAAACA 59.242 43.478 0.00 0.00 0.00 2.83
1991 4200 3.758554 ACACATCCTCATAAGCCACAAAC 59.241 43.478 0.00 0.00 0.00 2.93
1992 4201 4.032960 ACACATCCTCATAAGCCACAAA 57.967 40.909 0.00 0.00 0.00 2.83
1993 4202 3.719268 ACACATCCTCATAAGCCACAA 57.281 42.857 0.00 0.00 0.00 3.33
1994 4203 4.408596 TCATACACATCCTCATAAGCCACA 59.591 41.667 0.00 0.00 0.00 4.17
1995 4204 4.752101 GTCATACACATCCTCATAAGCCAC 59.248 45.833 0.00 0.00 0.00 5.01
1996 4205 4.202357 GGTCATACACATCCTCATAAGCCA 60.202 45.833 0.00 0.00 0.00 4.75
1997 4206 4.319177 GGTCATACACATCCTCATAAGCC 58.681 47.826 0.00 0.00 0.00 4.35
2056 4265 7.831193 GGAAATCTCATATATGGCACCTGTTAT 59.169 37.037 12.78 0.00 0.00 1.89
2057 4266 7.168219 GGAAATCTCATATATGGCACCTGTTA 58.832 38.462 12.78 0.00 0.00 2.41
2058 4267 6.006449 GGAAATCTCATATATGGCACCTGTT 58.994 40.000 12.78 0.00 0.00 3.16
2059 4268 5.564550 GGAAATCTCATATATGGCACCTGT 58.435 41.667 12.78 0.00 0.00 4.00
2071 4280 6.485830 AATCTGAAGGTCGGAAATCTCATA 57.514 37.500 0.00 0.00 35.07 2.15
2082 4293 4.635765 TCCAAATGCTAAATCTGAAGGTCG 59.364 41.667 0.00 0.00 0.00 4.79
2083 4294 6.515272 TTCCAAATGCTAAATCTGAAGGTC 57.485 37.500 0.00 0.00 0.00 3.85
2137 4348 7.081526 ACAATAATGCTGCACTAAGAAGAAG 57.918 36.000 3.57 0.00 0.00 2.85
2139 4350 5.586243 GGACAATAATGCTGCACTAAGAAGA 59.414 40.000 3.57 0.00 0.00 2.87
2140 4351 5.587844 AGGACAATAATGCTGCACTAAGAAG 59.412 40.000 3.57 0.00 0.00 2.85
2141 4352 5.355071 CAGGACAATAATGCTGCACTAAGAA 59.645 40.000 3.57 0.00 0.00 2.52
2142 4353 4.877823 CAGGACAATAATGCTGCACTAAGA 59.122 41.667 3.57 0.00 0.00 2.10
2155 4366 8.198109 GTGAAGAGATAAGTAGCAGGACAATAA 58.802 37.037 0.00 0.00 0.00 1.40
2156 4367 7.201920 GGTGAAGAGATAAGTAGCAGGACAATA 60.202 40.741 0.00 0.00 0.00 1.90
2157 4368 6.407525 GGTGAAGAGATAAGTAGCAGGACAAT 60.408 42.308 0.00 0.00 0.00 2.71
2158 4369 5.105310 GGTGAAGAGATAAGTAGCAGGACAA 60.105 44.000 0.00 0.00 0.00 3.18
2159 4370 4.402793 GGTGAAGAGATAAGTAGCAGGACA 59.597 45.833 0.00 0.00 0.00 4.02
2160 4371 4.647399 AGGTGAAGAGATAAGTAGCAGGAC 59.353 45.833 0.00 0.00 0.00 3.85
2161 4372 4.646945 CAGGTGAAGAGATAAGTAGCAGGA 59.353 45.833 0.00 0.00 0.00 3.86
2162 4373 4.739137 GCAGGTGAAGAGATAAGTAGCAGG 60.739 50.000 0.00 0.00 0.00 4.85
2163 4374 4.367450 GCAGGTGAAGAGATAAGTAGCAG 58.633 47.826 0.00 0.00 0.00 4.24
2164 4375 3.133003 GGCAGGTGAAGAGATAAGTAGCA 59.867 47.826 0.00 0.00 0.00 3.49
2165 4376 3.493524 GGGCAGGTGAAGAGATAAGTAGC 60.494 52.174 0.00 0.00 0.00 3.58
2166 4377 3.964031 AGGGCAGGTGAAGAGATAAGTAG 59.036 47.826 0.00 0.00 0.00 2.57
2167 4378 3.961408 GAGGGCAGGTGAAGAGATAAGTA 59.039 47.826 0.00 0.00 0.00 2.24
2168 4379 2.769095 GAGGGCAGGTGAAGAGATAAGT 59.231 50.000 0.00 0.00 0.00 2.24
2169 4380 3.037549 AGAGGGCAGGTGAAGAGATAAG 58.962 50.000 0.00 0.00 0.00 1.73
2199 4410 2.230508 CAGCTGGTTTGCAAGATGACAT 59.769 45.455 5.57 0.00 34.07 3.06
2321 4891 6.475727 GCGAGTTAATAATGCTGACTCAGTTA 59.524 38.462 7.89 0.45 37.24 2.24
2325 4895 5.011090 AGCGAGTTAATAATGCTGACTCA 57.989 39.130 0.00 0.00 37.24 3.41
2340 4918 3.728076 TGTGAAGACAAGTAGCGAGTT 57.272 42.857 0.00 0.00 0.00 3.01
2341 4919 3.508012 AGATGTGAAGACAAGTAGCGAGT 59.492 43.478 0.00 0.00 35.11 4.18
2357 4935 5.522824 CACACTTGATCTGTGGATAGATGTG 59.477 44.000 18.61 0.00 37.53 3.21
2429 5007 2.749621 GGCTCATGGTCCAAACTGTAAG 59.250 50.000 0.00 0.00 42.29 2.34
2474 5063 1.392853 GACAGCACTGAATCAGCGAAG 59.607 52.381 10.62 1.16 34.37 3.79
2475 5064 1.001293 AGACAGCACTGAATCAGCGAA 59.999 47.619 10.62 0.00 34.37 4.70
2516 5105 6.108687 TCAGTGTATGACTATTGAGGCAAAG 58.891 40.000 0.00 0.00 46.51 2.77
2546 5135 5.320549 AGGAAAATCATCTCATGCACAAC 57.679 39.130 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.