Multiple sequence alignment - TraesCS3A01G001600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G001600 chr3A 100.000 6255 0 0 1 6255 1060496 1054242 0.000000e+00 11551.0
1 TraesCS3A01G001600 chr3A 89.222 167 18 0 6089 6255 1046612 1046446 6.350000e-50 209.0
2 TraesCS3A01G001600 chr3A 92.857 56 3 1 2143 2198 45603289 45603343 5.200000e-11 80.5
3 TraesCS3A01G001600 chr3D 97.166 3282 76 5 2988 6255 3564968 3561690 0.000000e+00 5529.0
4 TraesCS3A01G001600 chr3D 94.552 2111 73 15 893 2987 3567098 3565014 0.000000e+00 3223.0
5 TraesCS3A01G001600 chr3D 88.089 1889 196 18 3981 5858 3628489 3626619 0.000000e+00 2215.0
6 TraesCS3A01G001600 chr3D 89.907 1179 89 14 971 2140 3632366 3631209 0.000000e+00 1491.0
7 TraesCS3A01G001600 chr3D 91.377 777 56 7 3173 3945 3629260 3628491 0.000000e+00 1053.0
8 TraesCS3A01G001600 chr3D 97.984 248 5 0 2262 2509 3631069 3630822 1.250000e-116 431.0
9 TraesCS3A01G001600 chr3D 91.892 259 19 2 3 260 3567924 3567667 1.660000e-95 361.0
10 TraesCS3A01G001600 chr3D 91.915 235 19 0 2753 2987 3629705 3629471 4.670000e-86 329.0
11 TraesCS3A01G001600 chr3D 90.419 167 16 0 6089 6255 3560065 3559899 2.940000e-53 220.0
12 TraesCS3A01G001600 chr3D 89.286 168 6 4 621 788 3632616 3632461 3.820000e-47 200.0
13 TraesCS3A01G001600 chr3D 91.216 148 9 2 627 770 3567313 3567166 1.380000e-46 198.0
14 TraesCS3A01G001600 chr3D 89.024 82 8 1 712 792 3633326 3633245 3.990000e-17 100.0
15 TraesCS3A01G001600 chr3D 92.727 55 4 0 2143 2197 547927095 547927149 5.200000e-11 80.5
16 TraesCS3A01G001600 chr3B 90.276 1450 111 13 3173 4610 371563 370132 0.000000e+00 1869.0
17 TraesCS3A01G001600 chr3B 90.256 1447 117 14 3173 4610 16460268 16458837 0.000000e+00 1869.0
18 TraesCS3A01G001600 chr3B 89.173 1173 101 9 973 2142 16463231 16462082 0.000000e+00 1439.0
19 TraesCS3A01G001600 chr3B 89.443 1042 76 14 4599 5637 16458800 16457790 0.000000e+00 1284.0
20 TraesCS3A01G001600 chr3B 94.168 703 41 0 4599 5301 370111 369409 0.000000e+00 1072.0
21 TraesCS3A01G001600 chr3B 88.659 820 56 22 843 1651 373880 373087 0.000000e+00 965.0
22 TraesCS3A01G001600 chr3B 88.521 453 34 7 2277 2729 372513 372079 3.320000e-147 532.0
23 TraesCS3A01G001600 chr3B 86.323 446 40 11 1707 2142 373069 372635 3.410000e-127 466.0
24 TraesCS3A01G001600 chr3B 90.938 320 24 1 2262 2581 16461961 16461647 5.800000e-115 425.0
25 TraesCS3A01G001600 chr3B 89.147 258 27 1 2734 2991 372027 371771 2.810000e-83 320.0
26 TraesCS3A01G001600 chr3B 95.652 161 7 0 2827 2987 16460650 16460490 6.220000e-65 259.0
27 TraesCS3A01G001600 chr3B 88.485 165 16 2 2993 3156 371711 371549 4.950000e-46 196.0
28 TraesCS3A01G001600 chr3B 85.795 176 11 7 2993 3156 16460427 16460254 2.320000e-39 174.0
29 TraesCS3A01G001600 chr3B 85.227 176 11 4 613 788 16463490 16463330 3.880000e-37 167.0
30 TraesCS3A01G001600 chr1D 84.524 84 11 2 85 167 13796130 13796048 1.450000e-11 82.4
31 TraesCS3A01G001600 chr1B 92.857 56 4 0 2143 2198 419204944 419204889 1.450000e-11 82.4
32 TraesCS3A01G001600 chr1B 100.000 29 0 0 2193 2221 61493983 61494011 3.000000e-03 54.7
33 TraesCS3A01G001600 chr5D 92.727 55 4 0 2143 2197 439643693 439643639 5.200000e-11 80.5
34 TraesCS3A01G001600 chr5D 100.000 32 0 0 2193 2224 24356358 24356327 6.770000e-05 60.2
35 TraesCS3A01G001600 chr5D 91.111 45 2 2 108 151 537628276 537628233 6.770000e-05 60.2
36 TraesCS3A01G001600 chr5B 92.727 55 4 0 2143 2197 243412318 243412264 5.200000e-11 80.5
37 TraesCS3A01G001600 chr5B 90.476 42 2 2 2190 2230 13377341 13377301 3.000000e-03 54.7
38 TraesCS3A01G001600 chr2B 92.727 55 4 0 2143 2197 73555149 73555095 5.200000e-11 80.5
39 TraesCS3A01G001600 chrUn 92.593 54 4 0 2143 2196 29813987 29814040 1.870000e-10 78.7
40 TraesCS3A01G001600 chr5A 92.727 55 3 1 2143 2197 622999403 622999350 1.870000e-10 78.7
41 TraesCS3A01G001600 chr7A 97.297 37 1 0 1286 1322 697007919 697007955 5.230000e-06 63.9
42 TraesCS3A01G001600 chr4A 85.484 62 6 3 91 151 631672822 631672763 1.880000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G001600 chr3A 1054242 1060496 6254 True 11551.000000 11551 100.000000 1 6255 1 chr3A.!!$R2 6254
1 TraesCS3A01G001600 chr3D 3559899 3567924 8025 True 1906.200000 5529 93.049000 3 6255 5 chr3D.!!$R1 6252
2 TraesCS3A01G001600 chr3D 3626619 3633326 6707 True 831.285714 2215 91.083143 621 5858 7 chr3D.!!$R2 5237
3 TraesCS3A01G001600 chr3B 16457790 16463490 5700 True 802.428571 1869 89.497714 613 5637 7 chr3B.!!$R2 5024
4 TraesCS3A01G001600 chr3B 369409 373880 4471 True 774.285714 1869 89.368429 843 5301 7 chr3B.!!$R1 4458

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 443 0.029700 ACCAAAAACCGCAACGTAGC 59.970 50.000 0.0 0.0 0.00 3.58 F
463 464 0.170116 TTTCGATTGCATTGTCCCGC 59.830 50.000 0.0 0.0 0.00 6.13 F
535 536 0.247736 CCCTCACAAAGACTCTCCGG 59.752 60.000 0.0 0.0 0.00 5.14 F
584 585 0.322997 CGGCTGGACCCCACAAATAA 60.323 55.000 0.0 0.0 33.26 1.40 F
1100 1209 1.229209 TCCTCTTCGCCCTCCTGTT 60.229 57.895 0.0 0.0 0.00 3.16 F
2045 2178 1.458639 GCAAAAGCAGCAGGACAGGT 61.459 55.000 0.0 0.0 0.00 4.00 F
3155 4630 0.251341 GGCCCACTGGTCAAAGACAT 60.251 55.000 0.0 0.0 35.79 3.06 F
4910 6460 0.462937 TGTGTTTGAGGTCACCCGTG 60.463 55.000 0.0 0.0 35.12 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1781 0.895530 TGATGAAGGTCCAGTCGTCC 59.104 55.000 10.71 0.00 0.00 4.79 R
1909 2036 2.360483 TGGTGTACGTGACGACCTTAAA 59.640 45.455 13.70 0.00 33.08 1.52 R
2275 2478 3.052082 CAGACACCCTTGCCTGCG 61.052 66.667 0.00 0.00 0.00 5.18 R
2392 2595 3.669036 CTGCAGGTCTCGTCGTCGG 62.669 68.421 5.57 0.00 37.69 4.79 R
2956 4363 1.038681 TTCATGCTTGATGGCCGCAT 61.039 50.000 9.03 9.03 44.53 4.73 R
3297 4773 0.108041 TTGGCGGTATTTCTCCGGAC 60.108 55.000 0.00 0.00 46.90 4.79 R
4986 6536 2.230508 GTCGTCACTGGGATGAACACTA 59.769 50.000 2.84 0.00 43.00 2.74 R
5879 7435 4.576463 GTCCATACTTTCAGTTAGCCCATG 59.424 45.833 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 2.093235 AGAGAAATCTAGTGGCAGTGGC 60.093 50.000 10.30 10.30 40.13 5.01
138 139 4.306600 GTGAGGCAAAAATAAACCAGTGG 58.693 43.478 7.91 7.91 0.00 4.00
148 149 0.398318 AAACCAGTGGGAGAGAGTGC 59.602 55.000 15.21 0.00 38.05 4.40
149 150 1.821061 AACCAGTGGGAGAGAGTGCG 61.821 60.000 15.21 0.00 38.05 5.34
150 151 1.979155 CCAGTGGGAGAGAGTGCGA 60.979 63.158 0.00 0.00 35.59 5.10
169 170 3.938963 GCGAGGATGTGAGGTGAAAATAA 59.061 43.478 0.00 0.00 0.00 1.40
207 208 1.417288 AACCTGTATACCGGGCTACC 58.583 55.000 16.69 0.00 44.28 3.18
211 212 2.037144 CTGTATACCGGGCTACCAACT 58.963 52.381 6.32 0.00 36.13 3.16
223 224 2.547990 CTACCAACTCCCCCTTAGTGT 58.452 52.381 0.00 0.00 0.00 3.55
225 226 0.618981 CCAACTCCCCCTTAGTGTCC 59.381 60.000 0.00 0.00 0.00 4.02
235 236 2.280628 CCTTAGTGTCCGCCAAGATTC 58.719 52.381 0.00 0.00 0.00 2.52
247 248 2.268298 CCAAGATTCTACAACGACCCG 58.732 52.381 0.00 0.00 0.00 5.28
262 263 4.090588 CCGAGGTTTAGCGGGCCA 62.091 66.667 4.39 0.00 43.67 5.36
263 264 2.818274 CGAGGTTTAGCGGGCCAC 60.818 66.667 4.39 0.00 0.00 5.01
264 265 2.349755 GAGGTTTAGCGGGCCACA 59.650 61.111 4.39 0.00 0.00 4.17
265 266 1.077716 GAGGTTTAGCGGGCCACAT 60.078 57.895 4.39 0.00 0.00 3.21
267 268 2.489751 GTTTAGCGGGCCACATGC 59.510 61.111 4.39 2.17 40.16 4.06
277 278 3.034569 GCCACATGCCAAATCGAAC 57.965 52.632 0.00 0.00 0.00 3.95
278 279 0.458370 GCCACATGCCAAATCGAACC 60.458 55.000 0.00 0.00 0.00 3.62
279 280 0.179166 CCACATGCCAAATCGAACCG 60.179 55.000 0.00 0.00 0.00 4.44
280 281 0.521291 CACATGCCAAATCGAACCGT 59.479 50.000 0.00 0.00 0.00 4.83
281 282 1.735018 CACATGCCAAATCGAACCGTA 59.265 47.619 0.00 0.00 0.00 4.02
285 286 1.205179 TGCCAAATCGAACCGTAGCTA 59.795 47.619 0.00 0.00 0.00 3.32
286 287 1.591619 GCCAAATCGAACCGTAGCTAC 59.408 52.381 14.19 14.19 0.00 3.58
287 288 2.199236 CCAAATCGAACCGTAGCTACC 58.801 52.381 18.16 3.14 0.00 3.18
288 289 2.159142 CCAAATCGAACCGTAGCTACCT 60.159 50.000 18.16 2.92 0.00 3.08
289 290 3.518590 CAAATCGAACCGTAGCTACCTT 58.481 45.455 18.16 9.50 0.00 3.50
290 291 2.865343 ATCGAACCGTAGCTACCTTG 57.135 50.000 18.16 9.40 0.00 3.61
291 292 1.538047 TCGAACCGTAGCTACCTTGT 58.462 50.000 18.16 10.03 0.00 3.16
293 294 1.068055 CGAACCGTAGCTACCTTGTGT 60.068 52.381 18.16 5.25 0.00 3.72
294 295 2.162208 CGAACCGTAGCTACCTTGTGTA 59.838 50.000 18.16 0.00 0.00 2.90
295 296 3.505836 GAACCGTAGCTACCTTGTGTAC 58.494 50.000 18.16 5.58 0.00 2.90
297 298 2.097825 CCGTAGCTACCTTGTGTACCT 58.902 52.381 18.16 0.00 0.00 3.08
298 299 2.098770 CCGTAGCTACCTTGTGTACCTC 59.901 54.545 18.16 0.00 0.00 3.85
304 305 5.459505 AGCTACCTTGTGTACCTCATATCT 58.540 41.667 0.00 0.00 0.00 1.98
305 306 5.303078 AGCTACCTTGTGTACCTCATATCTG 59.697 44.000 0.00 0.00 0.00 2.90
306 307 5.509840 GCTACCTTGTGTACCTCATATCTGG 60.510 48.000 0.00 0.00 0.00 3.86
307 308 3.711704 ACCTTGTGTACCTCATATCTGGG 59.288 47.826 0.00 0.00 0.00 4.45
308 309 3.967326 CCTTGTGTACCTCATATCTGGGA 59.033 47.826 0.00 0.00 0.00 4.37
311 312 4.620723 TGTGTACCTCATATCTGGGAACT 58.379 43.478 0.00 0.00 0.00 3.01
312 313 4.405680 TGTGTACCTCATATCTGGGAACTG 59.594 45.833 0.00 0.00 0.00 3.16
313 314 4.649674 GTGTACCTCATATCTGGGAACTGA 59.350 45.833 0.00 0.00 42.86 3.41
314 315 5.128827 GTGTACCTCATATCTGGGAACTGAA 59.871 44.000 0.00 0.00 41.93 3.02
317 318 4.164988 ACCTCATATCTGGGAACTGAAAGG 59.835 45.833 0.00 0.00 41.93 3.11
318 319 4.410228 CCTCATATCTGGGAACTGAAAGGA 59.590 45.833 0.00 0.00 41.93 3.36
319 320 5.454471 CCTCATATCTGGGAACTGAAAGGAG 60.454 48.000 0.00 0.00 41.93 3.69
323 324 5.527026 ATCTGGGAACTGAAAGGAGAATT 57.473 39.130 0.00 0.00 41.93 2.17
324 325 4.911390 TCTGGGAACTGAAAGGAGAATTC 58.089 43.478 0.00 0.00 39.30 2.17
325 326 4.350816 TCTGGGAACTGAAAGGAGAATTCA 59.649 41.667 8.44 0.00 39.30 2.57
326 327 5.014544 TCTGGGAACTGAAAGGAGAATTCAT 59.985 40.000 8.44 0.00 39.30 2.57
327 328 5.256474 TGGGAACTGAAAGGAGAATTCATC 58.744 41.667 8.44 2.52 39.30 2.92
330 331 6.127786 GGGAACTGAAAGGAGAATTCATCAAG 60.128 42.308 8.44 0.00 39.30 3.02
333 334 6.310149 ACTGAAAGGAGAATTCATCAAGGTT 58.690 36.000 8.44 0.00 39.30 3.50
334 335 6.432472 ACTGAAAGGAGAATTCATCAAGGTTC 59.568 38.462 8.44 2.86 39.30 3.62
336 337 6.950041 TGAAAGGAGAATTCATCAAGGTTCAT 59.050 34.615 8.44 0.00 32.10 2.57
337 338 7.452501 TGAAAGGAGAATTCATCAAGGTTCATT 59.547 33.333 8.44 0.00 32.10 2.57
338 339 7.787623 AAGGAGAATTCATCAAGGTTCATTT 57.212 32.000 8.44 0.00 0.00 2.32
339 340 7.166691 AGGAGAATTCATCAAGGTTCATTTG 57.833 36.000 8.44 0.00 0.00 2.32
340 341 6.950041 AGGAGAATTCATCAAGGTTCATTTGA 59.050 34.615 8.44 0.00 38.76 2.69
341 342 7.122353 AGGAGAATTCATCAAGGTTCATTTGAG 59.878 37.037 8.44 0.00 37.91 3.02
342 343 6.628185 AGAATTCATCAAGGTTCATTTGAGC 58.372 36.000 8.44 0.00 37.91 4.26
343 344 4.424061 TTCATCAAGGTTCATTTGAGCG 57.576 40.909 0.00 0.00 37.91 5.03
344 345 3.673902 TCATCAAGGTTCATTTGAGCGA 58.326 40.909 0.00 0.00 37.91 4.93
349 350 1.153353 GGTTCATTTGAGCGACGGAA 58.847 50.000 0.00 0.00 0.00 4.30
351 352 2.031508 GGTTCATTTGAGCGACGGAAAA 60.032 45.455 0.00 0.00 0.00 2.29
353 354 1.196808 TCATTTGAGCGACGGAAAAGC 59.803 47.619 0.00 0.00 0.00 3.51
356 357 0.812014 TTGAGCGACGGAAAAGCACA 60.812 50.000 0.00 0.00 0.00 4.57
357 358 1.221466 TGAGCGACGGAAAAGCACAG 61.221 55.000 0.00 0.00 0.00 3.66
358 359 1.901650 GAGCGACGGAAAAGCACAGG 61.902 60.000 0.00 0.00 0.00 4.00
359 360 1.959226 GCGACGGAAAAGCACAGGA 60.959 57.895 0.00 0.00 0.00 3.86
360 361 1.860078 CGACGGAAAAGCACAGGAC 59.140 57.895 0.00 0.00 0.00 3.85
361 362 0.878523 CGACGGAAAAGCACAGGACA 60.879 55.000 0.00 0.00 0.00 4.02
363 364 1.166531 ACGGAAAAGCACAGGACAGC 61.167 55.000 0.00 0.00 0.00 4.40
364 365 1.856265 CGGAAAAGCACAGGACAGCC 61.856 60.000 0.00 0.00 0.00 4.85
365 366 1.576421 GAAAAGCACAGGACAGCCG 59.424 57.895 0.00 0.00 39.96 5.52
366 367 2.463675 GAAAAGCACAGGACAGCCGC 62.464 60.000 0.00 0.00 39.96 6.53
377 378 4.201679 CAGCCGCCGTCGTCCATA 62.202 66.667 0.00 0.00 0.00 2.74
380 381 1.885850 GCCGCCGTCGTCCATAAAT 60.886 57.895 0.00 0.00 0.00 1.40
382 383 1.011333 CCGCCGTCGTCCATAAATTT 58.989 50.000 0.00 0.00 0.00 1.82
386 387 3.242608 CGCCGTCGTCCATAAATTTTCAT 60.243 43.478 0.00 0.00 0.00 2.57
388 389 4.035208 GCCGTCGTCCATAAATTTTCATCT 59.965 41.667 0.00 0.00 0.00 2.90
389 390 5.738370 CCGTCGTCCATAAATTTTCATCTC 58.262 41.667 0.00 0.00 0.00 2.75
391 392 6.017934 CCGTCGTCCATAAATTTTCATCTCAT 60.018 38.462 0.00 0.00 0.00 2.90
392 393 7.065894 CGTCGTCCATAAATTTTCATCTCATC 58.934 38.462 0.00 0.00 0.00 2.92
394 395 8.562892 GTCGTCCATAAATTTTCATCTCATCAT 58.437 33.333 0.00 0.00 0.00 2.45
396 397 9.177304 CGTCCATAAATTTTCATCTCATCATTG 57.823 33.333 0.00 0.00 0.00 2.82
402 403 7.649533 AATTTTCATCTCATCATTGTAGGCA 57.350 32.000 0.00 0.00 0.00 4.75
404 405 7.465353 TTTTCATCTCATCATTGTAGGCAAA 57.535 32.000 0.00 0.00 38.21 3.68
406 407 5.748402 TCATCTCATCATTGTAGGCAAACT 58.252 37.500 0.00 0.00 38.21 2.66
407 408 6.182627 TCATCTCATCATTGTAGGCAAACTT 58.817 36.000 0.00 0.00 38.21 2.66
408 409 5.885230 TCTCATCATTGTAGGCAAACTTG 57.115 39.130 0.00 0.00 38.21 3.16
423 424 3.147132 TTGCCAAGGCGAGAGACA 58.853 55.556 6.60 0.00 46.78 3.41
426 427 3.059982 CCAAGGCGAGAGACACCA 58.940 61.111 0.00 0.00 46.78 4.17
428 429 0.250295 CCAAGGCGAGAGACACCAAA 60.250 55.000 0.00 0.00 46.78 3.28
432 433 0.591659 GGCGAGAGACACCAAAAACC 59.408 55.000 0.00 0.00 40.66 3.27
435 436 1.305201 GAGAGACACCAAAAACCGCA 58.695 50.000 0.00 0.00 0.00 5.69
437 438 1.404035 AGAGACACCAAAAACCGCAAC 59.596 47.619 0.00 0.00 0.00 4.17
438 439 0.099791 AGACACCAAAAACCGCAACG 59.900 50.000 0.00 0.00 0.00 4.10
439 440 0.179158 GACACCAAAAACCGCAACGT 60.179 50.000 0.00 0.00 0.00 3.99
440 441 1.063764 GACACCAAAAACCGCAACGTA 59.936 47.619 0.00 0.00 0.00 3.57
441 442 1.064357 ACACCAAAAACCGCAACGTAG 59.936 47.619 0.00 0.00 0.00 3.51
442 443 0.029700 ACCAAAAACCGCAACGTAGC 59.970 50.000 0.00 0.00 0.00 3.58
443 444 0.309612 CCAAAAACCGCAACGTAGCT 59.690 50.000 0.00 0.00 0.00 3.32
444 445 1.268845 CCAAAAACCGCAACGTAGCTT 60.269 47.619 0.00 0.00 0.00 3.74
445 446 2.456010 CAAAAACCGCAACGTAGCTTT 58.544 42.857 0.00 0.00 0.00 3.51
446 447 2.855370 CAAAAACCGCAACGTAGCTTTT 59.145 40.909 0.00 0.00 0.00 2.27
447 448 2.394545 AAACCGCAACGTAGCTTTTC 57.605 45.000 0.00 0.00 0.00 2.29
451 452 1.127951 CCGCAACGTAGCTTTTCGATT 59.872 47.619 11.42 1.95 0.00 3.34
452 453 2.158143 CGCAACGTAGCTTTTCGATTG 58.842 47.619 11.42 11.70 0.00 2.67
455 456 3.747193 CAACGTAGCTTTTCGATTGCAT 58.253 40.909 11.42 0.00 0.00 3.96
456 457 4.158384 CAACGTAGCTTTTCGATTGCATT 58.842 39.130 11.42 0.00 0.00 3.56
458 459 3.188460 ACGTAGCTTTTCGATTGCATTGT 59.812 39.130 11.42 0.82 0.00 2.71
459 460 3.780801 CGTAGCTTTTCGATTGCATTGTC 59.219 43.478 0.00 0.00 0.00 3.18
460 461 3.221964 AGCTTTTCGATTGCATTGTCC 57.778 42.857 7.39 0.00 0.00 4.02
461 462 2.094545 AGCTTTTCGATTGCATTGTCCC 60.095 45.455 7.39 0.00 0.00 4.46
463 464 0.170116 TTTCGATTGCATTGTCCCGC 59.830 50.000 0.00 0.00 0.00 6.13
481 482 3.975992 CAATGTTGCCACTACGAGC 57.024 52.632 0.00 0.00 0.00 5.03
482 483 0.447801 CAATGTTGCCACTACGAGCC 59.552 55.000 0.00 0.00 0.00 4.70
484 485 3.488090 GTTGCCACTACGAGCCGC 61.488 66.667 0.00 0.00 0.00 6.53
502 503 2.124736 CGGCATCAACCACCGGAT 60.125 61.111 9.46 0.00 43.23 4.18
503 504 1.145156 CGGCATCAACCACCGGATA 59.855 57.895 9.46 0.00 43.23 2.59
504 505 0.250295 CGGCATCAACCACCGGATAT 60.250 55.000 9.46 0.00 43.23 1.63
506 507 1.238439 GCATCAACCACCGGATATGG 58.762 55.000 9.46 8.57 43.43 2.74
508 509 2.553028 GCATCAACCACCGGATATGGAT 60.553 50.000 16.09 1.40 39.87 3.41
509 510 3.307410 GCATCAACCACCGGATATGGATA 60.307 47.826 16.09 1.87 39.87 2.59
510 511 4.507710 CATCAACCACCGGATATGGATAG 58.492 47.826 16.09 5.66 39.87 2.08
512 513 3.832490 TCAACCACCGGATATGGATAGAG 59.168 47.826 16.09 1.93 39.87 2.43
515 516 4.489737 ACCACCGGATATGGATAGAGAAA 58.510 43.478 16.09 0.00 39.87 2.52
516 517 4.283722 ACCACCGGATATGGATAGAGAAAC 59.716 45.833 16.09 0.00 39.87 2.78
519 520 4.097418 CCGGATATGGATAGAGAAACCCT 58.903 47.826 0.00 0.00 0.00 4.34
520 521 4.160626 CCGGATATGGATAGAGAAACCCTC 59.839 50.000 0.00 0.00 42.28 4.30
521 522 4.772624 CGGATATGGATAGAGAAACCCTCA 59.227 45.833 0.00 0.00 44.40 3.86
522 523 5.336849 CGGATATGGATAGAGAAACCCTCAC 60.337 48.000 0.00 0.00 44.40 3.51
523 524 5.544176 GGATATGGATAGAGAAACCCTCACA 59.456 44.000 0.00 0.00 44.40 3.58
524 525 6.043243 GGATATGGATAGAGAAACCCTCACAA 59.957 42.308 0.00 0.00 44.40 3.33
525 526 5.779241 ATGGATAGAGAAACCCTCACAAA 57.221 39.130 0.00 0.00 44.40 2.83
529 530 5.046231 GGATAGAGAAACCCTCACAAAGACT 60.046 44.000 0.00 0.00 44.40 3.24
530 531 4.344359 AGAGAAACCCTCACAAAGACTC 57.656 45.455 0.00 0.00 44.40 3.36
531 532 3.970640 AGAGAAACCCTCACAAAGACTCT 59.029 43.478 0.00 0.00 44.40 3.24
533 534 3.071747 AGAAACCCTCACAAAGACTCTCC 59.928 47.826 0.00 0.00 0.00 3.71
535 536 0.247736 CCCTCACAAAGACTCTCCGG 59.752 60.000 0.00 0.00 0.00 5.14
536 537 0.969894 CCTCACAAAGACTCTCCGGT 59.030 55.000 0.00 0.00 0.00 5.28
537 538 1.337260 CCTCACAAAGACTCTCCGGTG 60.337 57.143 0.00 0.00 0.00 4.94
538 539 1.341531 CTCACAAAGACTCTCCGGTGT 59.658 52.381 0.00 0.00 0.00 4.16
539 540 1.760613 TCACAAAGACTCTCCGGTGTT 59.239 47.619 0.00 0.00 0.00 3.32
540 541 2.135933 CACAAAGACTCTCCGGTGTTC 58.864 52.381 0.00 0.34 0.00 3.18
542 543 2.135933 CAAAGACTCTCCGGTGTTCAC 58.864 52.381 0.00 0.00 0.00 3.18
543 544 1.705873 AAGACTCTCCGGTGTTCACT 58.294 50.000 0.00 0.00 0.00 3.41
547 548 2.295349 GACTCTCCGGTGTTCACTACAA 59.705 50.000 0.00 0.00 38.80 2.41
548 549 2.897969 ACTCTCCGGTGTTCACTACAAT 59.102 45.455 0.00 0.00 38.80 2.71
551 552 1.067425 TCCGGTGTTCACTACAATCCG 60.067 52.381 0.00 0.00 42.80 4.18
552 553 1.337447 CCGGTGTTCACTACAATCCGT 60.337 52.381 0.00 0.00 42.05 4.69
567 568 3.020627 CGTAGGTCGAGTAGCCGG 58.979 66.667 0.00 0.00 42.86 6.13
569 570 1.823041 GTAGGTCGAGTAGCCGGCT 60.823 63.158 34.85 34.85 34.15 5.52
570 571 1.822613 TAGGTCGAGTAGCCGGCTG 60.823 63.158 38.98 22.19 34.15 4.85
572 573 3.138798 GTCGAGTAGCCGGCTGGA 61.139 66.667 38.98 25.26 37.49 3.86
573 574 3.138798 TCGAGTAGCCGGCTGGAC 61.139 66.667 38.98 28.88 37.49 4.02
574 575 4.208686 CGAGTAGCCGGCTGGACC 62.209 72.222 38.98 22.21 37.49 4.46
575 576 3.851128 GAGTAGCCGGCTGGACCC 61.851 72.222 38.98 17.57 37.49 4.46
581 582 4.278513 CCGGCTGGACCCCACAAA 62.279 66.667 5.28 0.00 37.49 2.83
582 583 2.035626 CGGCTGGACCCCACAAAT 59.964 61.111 0.00 0.00 33.26 2.32
584 585 0.322997 CGGCTGGACCCCACAAATAA 60.323 55.000 0.00 0.00 33.26 1.40
585 586 1.684869 CGGCTGGACCCCACAAATAAT 60.685 52.381 0.00 0.00 33.26 1.28
586 587 2.031870 GGCTGGACCCCACAAATAATC 58.968 52.381 0.00 0.00 0.00 1.75
587 588 2.622977 GGCTGGACCCCACAAATAATCA 60.623 50.000 0.00 0.00 0.00 2.57
590 591 2.042297 TGGACCCCACAAATAATCAGCA 59.958 45.455 0.00 0.00 0.00 4.41
592 593 2.099756 GACCCCACAAATAATCAGCAGC 59.900 50.000 0.00 0.00 0.00 5.25
593 594 2.101783 CCCCACAAATAATCAGCAGCA 58.898 47.619 0.00 0.00 0.00 4.41
594 595 2.496871 CCCCACAAATAATCAGCAGCAA 59.503 45.455 0.00 0.00 0.00 3.91
596 597 4.365723 CCCACAAATAATCAGCAGCAATC 58.634 43.478 0.00 0.00 0.00 2.67
597 598 4.142116 CCCACAAATAATCAGCAGCAATCA 60.142 41.667 0.00 0.00 0.00 2.57
598 599 5.041287 CCACAAATAATCAGCAGCAATCAG 58.959 41.667 0.00 0.00 0.00 2.90
602 603 7.491372 CACAAATAATCAGCAGCAATCAGATTT 59.509 33.333 0.00 0.00 31.89 2.17
603 604 8.038944 ACAAATAATCAGCAGCAATCAGATTTT 58.961 29.630 0.00 0.00 31.89 1.82
605 606 9.745880 AAATAATCAGCAGCAATCAGATTTTAG 57.254 29.630 0.00 0.00 31.89 1.85
607 608 4.592942 TCAGCAGCAATCAGATTTTAGGT 58.407 39.130 0.00 0.00 0.00 3.08
608 609 4.397103 TCAGCAGCAATCAGATTTTAGGTG 59.603 41.667 0.00 6.74 0.00 4.00
609 610 3.698040 AGCAGCAATCAGATTTTAGGTGG 59.302 43.478 11.23 0.00 0.00 4.61
611 612 4.019174 CAGCAATCAGATTTTAGGTGGGT 58.981 43.478 0.00 0.00 0.00 4.51
788 893 5.188434 GGATCCTGACTGATTGATTGTGAA 58.812 41.667 3.84 0.00 0.00 3.18
789 894 5.296283 GGATCCTGACTGATTGATTGTGAAG 59.704 44.000 3.84 0.00 0.00 3.02
790 895 5.233083 TCCTGACTGATTGATTGTGAAGT 57.767 39.130 0.00 0.00 0.00 3.01
791 896 6.358974 TCCTGACTGATTGATTGTGAAGTA 57.641 37.500 0.00 0.00 0.00 2.24
792 897 6.950842 TCCTGACTGATTGATTGTGAAGTAT 58.049 36.000 0.00 0.00 0.00 2.12
793 898 8.078060 TCCTGACTGATTGATTGTGAAGTATA 57.922 34.615 0.00 0.00 0.00 1.47
794 899 8.539544 TCCTGACTGATTGATTGTGAAGTATAA 58.460 33.333 0.00 0.00 0.00 0.98
795 900 9.166173 CCTGACTGATTGATTGTGAAGTATAAA 57.834 33.333 0.00 0.00 0.00 1.40
822 927 8.080417 TGAGTATAACTATGACTGTAAATCGGC 58.920 37.037 0.00 0.00 0.00 5.54
823 928 7.948357 AGTATAACTATGACTGTAAATCGGCA 58.052 34.615 0.00 0.00 0.00 5.69
824 929 8.082852 AGTATAACTATGACTGTAAATCGGCAG 58.917 37.037 0.00 0.00 38.58 4.85
825 930 5.339008 AACTATGACTGTAAATCGGCAGA 57.661 39.130 0.00 0.00 36.62 4.26
826 931 5.537300 ACTATGACTGTAAATCGGCAGAT 57.463 39.130 0.00 0.00 39.12 2.90
827 932 6.650427 ACTATGACTGTAAATCGGCAGATA 57.350 37.500 0.00 0.00 35.74 1.98
828 933 7.050970 ACTATGACTGTAAATCGGCAGATAA 57.949 36.000 0.00 0.00 35.74 1.75
829 934 7.497595 ACTATGACTGTAAATCGGCAGATAAA 58.502 34.615 0.00 0.00 35.74 1.40
830 935 8.150945 ACTATGACTGTAAATCGGCAGATAAAT 58.849 33.333 0.00 0.00 35.74 1.40
831 936 9.639601 CTATGACTGTAAATCGGCAGATAAATA 57.360 33.333 0.00 0.00 35.74 1.40
832 937 7.946655 TGACTGTAAATCGGCAGATAAATAG 57.053 36.000 0.00 2.14 35.74 1.73
833 938 6.423905 TGACTGTAAATCGGCAGATAAATAGC 59.576 38.462 0.00 0.00 35.74 2.97
834 939 6.525629 ACTGTAAATCGGCAGATAAATAGCT 58.474 36.000 0.00 0.00 35.74 3.32
835 940 7.667557 ACTGTAAATCGGCAGATAAATAGCTA 58.332 34.615 0.00 0.00 35.74 3.32
836 941 8.314751 ACTGTAAATCGGCAGATAAATAGCTAT 58.685 33.333 0.00 0.00 35.74 2.97
837 942 8.479313 TGTAAATCGGCAGATAAATAGCTATG 57.521 34.615 7.09 0.00 35.74 2.23
838 943 8.311109 TGTAAATCGGCAGATAAATAGCTATGA 58.689 33.333 7.09 0.00 35.74 2.15
839 944 7.602517 AAATCGGCAGATAAATAGCTATGAC 57.397 36.000 7.09 0.00 35.74 3.06
840 945 5.984695 TCGGCAGATAAATAGCTATGACT 57.015 39.130 7.09 2.07 0.00 3.41
991 1100 2.495270 CACACATAGTCTGTCTGCCTCT 59.505 50.000 0.00 0.00 35.29 3.69
1059 1168 1.522580 GAGGACGGCATGGAAGCTC 60.523 63.158 0.00 0.00 34.17 4.09
1100 1209 1.229209 TCCTCTTCGCCCTCCTGTT 60.229 57.895 0.00 0.00 0.00 3.16
1206 1315 4.011698 TGTGGATCCTCAACATGAACATG 58.988 43.478 14.08 12.43 44.15 3.21
1322 1441 7.701501 CGTTCTTATACTTCTTTACAGAGGGAC 59.298 40.741 0.00 0.00 30.09 4.46
1329 1448 6.995364 ACTTCTTTACAGAGGGACTAGTTTC 58.005 40.000 0.00 0.00 41.55 2.78
1501 1620 2.865308 CGTGCTACGTCTCCGACA 59.135 61.111 0.00 0.00 36.74 4.35
1659 1781 3.479269 GCCGGCGACAACTTCTCG 61.479 66.667 12.58 0.00 0.00 4.04
1697 1819 5.597182 TCATCAAGGTTAGCTAATACCGTCT 59.403 40.000 9.88 0.00 39.46 4.18
1698 1820 5.258456 TCAAGGTTAGCTAATACCGTCTG 57.742 43.478 9.88 8.37 39.46 3.51
1909 2036 2.746375 GGGACCATCCTGCCATCGT 61.746 63.158 0.00 0.00 36.57 3.73
1972 2099 2.063266 GGATTCGCACGTAACAACAGA 58.937 47.619 0.00 0.00 0.00 3.41
2045 2178 1.458639 GCAAAAGCAGCAGGACAGGT 61.459 55.000 0.00 0.00 0.00 4.00
2146 2279 6.108687 TGAATGTTCTGGTCAGTAGCATAAG 58.891 40.000 0.00 0.00 31.47 1.73
2164 2297 5.854338 GCATAAGAGCGTCTAGATCACTAAC 59.146 44.000 0.00 0.00 37.82 2.34
2275 2478 1.508632 ACTGTCACCGTGTAATGCAC 58.491 50.000 0.00 0.00 44.36 4.57
2392 2595 4.416738 GTGCCTCCTGCTGGGGTC 62.417 72.222 8.91 0.00 42.00 4.46
2519 2722 4.813161 CACACCATCAACTCCATCATCTAC 59.187 45.833 0.00 0.00 0.00 2.59
2524 2727 6.060136 CCATCAACTCCATCATCTACAACAT 58.940 40.000 0.00 0.00 0.00 2.71
2525 2728 7.147497 ACCATCAACTCCATCATCTACAACATA 60.147 37.037 0.00 0.00 0.00 2.29
2526 2729 7.172190 CCATCAACTCCATCATCTACAACATAC 59.828 40.741 0.00 0.00 0.00 2.39
2527 2730 7.181569 TCAACTCCATCATCTACAACATACA 57.818 36.000 0.00 0.00 0.00 2.29
2528 2731 7.267857 TCAACTCCATCATCTACAACATACAG 58.732 38.462 0.00 0.00 0.00 2.74
2865 4272 6.491394 CATCGGTGTGTTTAGAAACTTTTCA 58.509 36.000 6.69 0.00 39.61 2.69
3146 4621 3.063650 AGGAATAATATGGCCCACTGGT 58.936 45.455 0.00 0.00 0.00 4.00
3155 4630 0.251341 GGCCCACTGGTCAAAGACAT 60.251 55.000 0.00 0.00 35.79 3.06
3188 4663 3.356529 AAGGACTGGCCAAAGACATAG 57.643 47.619 7.01 0.00 40.02 2.23
3247 4723 1.226542 TCCTACGAGGATCTGCGGT 59.773 57.895 11.33 0.03 40.06 5.68
3297 4773 3.570125 TCGAGTCAGCCAGGAACATATAG 59.430 47.826 0.00 0.00 0.00 1.31
3336 4812 5.299949 CCAAGTCCAATGATCGACATATCA 58.700 41.667 0.00 0.00 40.07 2.15
3743 5236 2.750350 CCTCCAGTTCCGGCAGTT 59.250 61.111 0.00 0.00 0.00 3.16
4532 6034 5.696724 ACAAACTTTATCTTCGTGTCCTCAG 59.303 40.000 0.00 0.00 0.00 3.35
4572 6074 2.820059 TGATGTATCTCCATCGTGCC 57.180 50.000 0.00 0.00 43.39 5.01
4579 6081 5.297547 TGTATCTCCATCGTGCCTTTTATC 58.702 41.667 0.00 0.00 0.00 1.75
4771 6321 4.985538 ACAACTTTGTGGAGTACATGGAT 58.014 39.130 0.00 0.00 40.49 3.41
4910 6460 0.462937 TGTGTTTGAGGTCACCCGTG 60.463 55.000 0.00 0.00 35.12 4.94
4986 6536 3.199946 TGGTTCACCTTTGACTCTTCACT 59.800 43.478 0.00 0.00 36.82 3.41
5092 6642 7.231925 TGGATGATAACAGGAAATCATGATTGG 59.768 37.037 21.39 13.34 41.70 3.16
5126 6676 6.070881 TGGAGAATTTATTTGTTGTGGATGGG 60.071 38.462 0.00 0.00 0.00 4.00
5127 6677 5.733676 AGAATTTATTTGTTGTGGATGGGC 58.266 37.500 0.00 0.00 0.00 5.36
5696 7252 8.456471 TGAATCACAAATCAAGAATTAGCTCTG 58.544 33.333 0.00 0.00 0.00 3.35
5752 7308 6.249260 GCACGAATCATTCACTTTGTTATCAC 59.751 38.462 0.00 0.00 0.00 3.06
5789 7345 8.506196 TTAGCTTTATCACCCATAGATAAGGT 57.494 34.615 0.00 0.00 38.69 3.50
5879 7435 6.806751 TCACTATGTGCATAAGTCCTTCTAC 58.193 40.000 0.00 0.00 32.98 2.59
5885 7441 3.142174 GCATAAGTCCTTCTACATGGGC 58.858 50.000 0.00 0.00 0.00 5.36
5926 7482 8.928270 ACTCCTAATATAGACGAAAACAACTG 57.072 34.615 0.00 0.00 0.00 3.16
5980 7536 2.303163 TTCCACGATTCCACCATACG 57.697 50.000 0.00 0.00 0.00 3.06
6150 7706 8.972127 TCATGCTACTCCTAGATTATGATTACC 58.028 37.037 0.00 0.00 0.00 2.85
6151 7707 8.976353 CATGCTACTCCTAGATTATGATTACCT 58.024 37.037 0.00 0.00 0.00 3.08
6234 7790 8.679288 AAAATCGCAATTGAGTGAGAAATAAG 57.321 30.769 10.34 0.00 30.81 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.420002 CATGTACGGATTCAATTCAATCACAT 58.580 34.615 4.36 3.04 34.84 3.21
15 16 4.022416 TGCTTTCTTTTGCATGTACGGATT 60.022 37.500 0.00 0.00 33.94 3.01
21 22 6.815641 TCTTTTTGTGCTTTCTTTTGCATGTA 59.184 30.769 0.00 0.00 41.45 2.29
88 89 2.012673 CAGCCACTGCCACTAGATTTC 58.987 52.381 0.00 0.00 38.69 2.17
96 97 2.753043 CCCATCAGCCACTGCCAC 60.753 66.667 0.00 0.00 38.69 5.01
106 107 0.329261 TTTGCCTCACCTCCCATCAG 59.671 55.000 0.00 0.00 0.00 2.90
138 139 0.102120 CACATCCTCGCACTCTCTCC 59.898 60.000 0.00 0.00 0.00 3.71
148 149 5.163754 GGTTTATTTTCACCTCACATCCTCG 60.164 44.000 0.00 0.00 0.00 4.63
149 150 5.163754 CGGTTTATTTTCACCTCACATCCTC 60.164 44.000 0.00 0.00 0.00 3.71
150 151 4.700213 CGGTTTATTTTCACCTCACATCCT 59.300 41.667 0.00 0.00 0.00 3.24
207 208 0.249398 CGGACACTAAGGGGGAGTTG 59.751 60.000 0.00 0.00 0.00 3.16
211 212 2.686106 GGCGGACACTAAGGGGGA 60.686 66.667 0.00 0.00 0.00 4.81
223 224 1.546923 TCGTTGTAGAATCTTGGCGGA 59.453 47.619 0.00 0.00 0.00 5.54
225 226 1.659098 GGTCGTTGTAGAATCTTGGCG 59.341 52.381 0.00 0.00 0.00 5.69
235 236 2.872370 CTAAACCTCGGGTCGTTGTAG 58.128 52.381 0.00 0.00 33.12 2.74
247 248 1.077716 ATGTGGCCCGCTAAACCTC 60.078 57.895 0.00 0.00 0.00 3.85
261 262 0.521291 ACGGTTCGATTTGGCATGTG 59.479 50.000 0.00 0.00 0.00 3.21
262 263 2.006888 CTACGGTTCGATTTGGCATGT 58.993 47.619 0.00 0.00 0.00 3.21
263 264 1.268032 GCTACGGTTCGATTTGGCATG 60.268 52.381 0.00 0.00 0.00 4.06
264 265 1.014352 GCTACGGTTCGATTTGGCAT 58.986 50.000 0.00 0.00 0.00 4.40
265 266 0.036765 AGCTACGGTTCGATTTGGCA 60.037 50.000 0.00 0.00 0.00 4.92
267 268 2.159142 AGGTAGCTACGGTTCGATTTGG 60.159 50.000 17.48 0.00 0.00 3.28
268 269 3.160777 AGGTAGCTACGGTTCGATTTG 57.839 47.619 17.48 0.00 0.00 2.32
271 272 2.097825 ACAAGGTAGCTACGGTTCGAT 58.902 47.619 17.48 0.00 0.00 3.59
273 274 1.068055 ACACAAGGTAGCTACGGTTCG 60.068 52.381 17.48 8.47 0.00 3.95
276 277 1.821136 GGTACACAAGGTAGCTACGGT 59.179 52.381 17.48 12.37 45.01 4.83
277 278 2.573941 GGTACACAAGGTAGCTACGG 57.426 55.000 17.48 11.75 45.01 4.02
285 286 3.711704 CCCAGATATGAGGTACACAAGGT 59.288 47.826 0.00 0.00 29.57 3.50
286 287 3.967326 TCCCAGATATGAGGTACACAAGG 59.033 47.826 0.00 0.00 29.57 3.61
287 288 5.129485 AGTTCCCAGATATGAGGTACACAAG 59.871 44.000 0.00 0.00 29.57 3.16
288 289 5.030147 AGTTCCCAGATATGAGGTACACAA 58.970 41.667 0.00 0.00 29.57 3.33
289 290 4.405680 CAGTTCCCAGATATGAGGTACACA 59.594 45.833 0.00 0.00 0.00 3.72
290 291 4.649674 TCAGTTCCCAGATATGAGGTACAC 59.350 45.833 0.00 0.00 0.00 2.90
291 292 4.878968 TCAGTTCCCAGATATGAGGTACA 58.121 43.478 0.00 0.00 0.00 2.90
293 294 5.366768 CCTTTCAGTTCCCAGATATGAGGTA 59.633 44.000 0.00 0.00 0.00 3.08
294 295 4.164988 CCTTTCAGTTCCCAGATATGAGGT 59.835 45.833 0.00 0.00 0.00 3.85
295 296 4.410228 TCCTTTCAGTTCCCAGATATGAGG 59.590 45.833 0.00 0.00 0.00 3.86
297 298 5.280499 TCTCCTTTCAGTTCCCAGATATGA 58.720 41.667 0.00 0.00 0.00 2.15
298 299 5.620738 TCTCCTTTCAGTTCCCAGATATG 57.379 43.478 0.00 0.00 0.00 1.78
304 305 4.722526 TGAATTCTCCTTTCAGTTCCCA 57.277 40.909 7.05 0.00 0.00 4.37
305 306 5.256474 TGATGAATTCTCCTTTCAGTTCCC 58.744 41.667 7.05 0.00 36.60 3.97
306 307 6.127786 CCTTGATGAATTCTCCTTTCAGTTCC 60.128 42.308 7.05 0.00 36.60 3.62
307 308 6.432472 ACCTTGATGAATTCTCCTTTCAGTTC 59.568 38.462 7.05 0.00 36.60 3.01
308 309 6.310149 ACCTTGATGAATTCTCCTTTCAGTT 58.690 36.000 7.05 0.00 36.60 3.16
311 312 6.306199 TGAACCTTGATGAATTCTCCTTTCA 58.694 36.000 7.05 4.14 37.49 2.69
312 313 6.824305 TGAACCTTGATGAATTCTCCTTTC 57.176 37.500 7.05 1.79 0.00 2.62
313 314 7.787623 AATGAACCTTGATGAATTCTCCTTT 57.212 32.000 7.05 0.00 0.00 3.11
314 315 7.452501 TCAAATGAACCTTGATGAATTCTCCTT 59.547 33.333 7.05 0.00 0.00 3.36
317 318 6.750963 GCTCAAATGAACCTTGATGAATTCTC 59.249 38.462 7.05 2.78 32.53 2.87
318 319 6.624423 CGCTCAAATGAACCTTGATGAATTCT 60.624 38.462 7.05 0.00 32.53 2.40
319 320 5.514204 CGCTCAAATGAACCTTGATGAATTC 59.486 40.000 0.00 0.00 32.53 2.17
323 324 3.436704 GTCGCTCAAATGAACCTTGATGA 59.563 43.478 0.00 0.00 32.53 2.92
324 325 3.725895 CGTCGCTCAAATGAACCTTGATG 60.726 47.826 0.00 0.00 32.53 3.07
325 326 2.416547 CGTCGCTCAAATGAACCTTGAT 59.583 45.455 0.00 0.00 32.53 2.57
326 327 1.798223 CGTCGCTCAAATGAACCTTGA 59.202 47.619 0.00 0.00 0.00 3.02
327 328 1.135972 CCGTCGCTCAAATGAACCTTG 60.136 52.381 0.00 0.00 0.00 3.61
330 331 1.153353 TTCCGTCGCTCAAATGAACC 58.847 50.000 0.00 0.00 0.00 3.62
333 334 1.196808 GCTTTTCCGTCGCTCAAATGA 59.803 47.619 0.00 0.00 0.00 2.57
334 335 1.069296 TGCTTTTCCGTCGCTCAAATG 60.069 47.619 0.00 0.00 0.00 2.32
336 337 0.306533 GTGCTTTTCCGTCGCTCAAA 59.693 50.000 0.00 0.00 0.00 2.69
337 338 0.812014 TGTGCTTTTCCGTCGCTCAA 60.812 50.000 0.00 0.00 0.00 3.02
338 339 1.221466 CTGTGCTTTTCCGTCGCTCA 61.221 55.000 0.00 0.00 0.00 4.26
339 340 1.493311 CTGTGCTTTTCCGTCGCTC 59.507 57.895 0.00 0.00 0.00 5.03
340 341 1.961277 CCTGTGCTTTTCCGTCGCT 60.961 57.895 0.00 0.00 0.00 4.93
341 342 1.959226 TCCTGTGCTTTTCCGTCGC 60.959 57.895 0.00 0.00 0.00 5.19
342 343 0.878523 TGTCCTGTGCTTTTCCGTCG 60.879 55.000 0.00 0.00 0.00 5.12
343 344 0.868406 CTGTCCTGTGCTTTTCCGTC 59.132 55.000 0.00 0.00 0.00 4.79
344 345 1.166531 GCTGTCCTGTGCTTTTCCGT 61.167 55.000 0.00 0.00 0.00 4.69
349 350 2.980233 GCGGCTGTCCTGTGCTTT 60.980 61.111 0.00 0.00 0.00 3.51
363 364 1.011333 AAATTTATGGACGACGGCGG 58.989 50.000 18.49 0.00 43.17 6.13
364 365 2.094575 TGAAAATTTATGGACGACGGCG 59.905 45.455 10.39 10.39 44.79 6.46
365 366 3.750639 TGAAAATTTATGGACGACGGC 57.249 42.857 0.00 0.00 0.00 5.68
366 367 5.293324 TGAGATGAAAATTTATGGACGACGG 59.707 40.000 0.00 0.00 0.00 4.79
367 368 6.344572 TGAGATGAAAATTTATGGACGACG 57.655 37.500 0.00 0.00 0.00 5.12
377 378 8.070034 TGCCTACAATGATGAGATGAAAATTT 57.930 30.769 0.00 0.00 0.00 1.82
380 381 7.177216 AGTTTGCCTACAATGATGAGATGAAAA 59.823 33.333 0.00 0.00 35.21 2.29
382 383 6.182627 AGTTTGCCTACAATGATGAGATGAA 58.817 36.000 0.00 0.00 35.21 2.57
386 387 5.885230 CAAGTTTGCCTACAATGATGAGA 57.115 39.130 0.00 0.00 35.21 3.27
402 403 0.108585 TCTCTCGCCTTGGCAAGTTT 59.891 50.000 24.57 0.00 0.00 2.66
404 405 1.004440 GTCTCTCGCCTTGGCAAGT 60.004 57.895 24.57 0.00 0.00 3.16
406 407 1.301716 GTGTCTCTCGCCTTGGCAA 60.302 57.895 12.45 0.00 0.00 4.52
407 408 2.343758 GTGTCTCTCGCCTTGGCA 59.656 61.111 12.45 0.00 0.00 4.92
408 409 2.435059 GGTGTCTCTCGCCTTGGC 60.435 66.667 0.75 0.75 42.91 4.52
409 410 0.250295 TTTGGTGTCTCTCGCCTTGG 60.250 55.000 0.00 0.00 46.10 3.61
410 411 1.593196 TTTTGGTGTCTCTCGCCTTG 58.407 50.000 0.00 0.00 46.10 3.61
411 412 1.947456 GTTTTTGGTGTCTCTCGCCTT 59.053 47.619 0.00 0.00 46.10 4.35
415 416 0.234884 GCGGTTTTTGGTGTCTCTCG 59.765 55.000 0.00 0.00 0.00 4.04
416 417 1.305201 TGCGGTTTTTGGTGTCTCTC 58.695 50.000 0.00 0.00 0.00 3.20
417 418 1.404035 GTTGCGGTTTTTGGTGTCTCT 59.596 47.619 0.00 0.00 0.00 3.10
418 419 1.835121 GTTGCGGTTTTTGGTGTCTC 58.165 50.000 0.00 0.00 0.00 3.36
420 421 0.179158 ACGTTGCGGTTTTTGGTGTC 60.179 50.000 0.00 0.00 0.00 3.67
421 422 1.064357 CTACGTTGCGGTTTTTGGTGT 59.936 47.619 0.00 0.00 0.00 4.16
423 424 0.029700 GCTACGTTGCGGTTTTTGGT 59.970 50.000 6.17 0.00 0.00 3.67
426 427 2.855660 AAAGCTACGTTGCGGTTTTT 57.144 40.000 16.07 8.49 38.13 1.94
428 429 1.333435 CGAAAAGCTACGTTGCGGTTT 60.333 47.619 20.09 20.09 38.13 3.27
432 433 2.158143 CAATCGAAAAGCTACGTTGCG 58.842 47.619 16.07 2.07 38.13 4.85
435 436 4.158384 CAATGCAATCGAAAAGCTACGTT 58.842 39.130 0.00 0.00 0.00 3.99
437 438 3.747193 ACAATGCAATCGAAAAGCTACG 58.253 40.909 0.00 0.00 0.00 3.51
438 439 4.098416 GGACAATGCAATCGAAAAGCTAC 58.902 43.478 0.00 0.00 0.00 3.58
439 440 3.128589 GGGACAATGCAATCGAAAAGCTA 59.871 43.478 0.00 0.00 0.00 3.32
440 441 2.094545 GGGACAATGCAATCGAAAAGCT 60.095 45.455 0.00 0.00 0.00 3.74
441 442 2.262211 GGGACAATGCAATCGAAAAGC 58.738 47.619 0.00 0.00 0.00 3.51
442 443 2.518949 CGGGACAATGCAATCGAAAAG 58.481 47.619 0.00 0.00 0.00 2.27
443 444 1.402194 GCGGGACAATGCAATCGAAAA 60.402 47.619 0.00 0.00 0.00 2.29
444 445 0.170116 GCGGGACAATGCAATCGAAA 59.830 50.000 0.00 0.00 0.00 3.46
445 446 0.957888 TGCGGGACAATGCAATCGAA 60.958 50.000 0.00 0.00 38.34 3.71
446 447 0.957888 TTGCGGGACAATGCAATCGA 60.958 50.000 0.00 0.00 45.45 3.59
447 448 1.505807 TTGCGGGACAATGCAATCG 59.494 52.632 0.00 0.00 45.45 3.34
486 487 1.238439 CATATCCGGTGGTTGATGCC 58.762 55.000 0.00 0.00 0.00 4.40
487 488 1.202758 TCCATATCCGGTGGTTGATGC 60.203 52.381 9.27 0.00 37.96 3.91
488 489 2.928801 TCCATATCCGGTGGTTGATG 57.071 50.000 9.27 2.17 37.96 3.07
489 490 4.425772 TCTATCCATATCCGGTGGTTGAT 58.574 43.478 9.27 6.62 37.96 2.57
491 492 3.832490 TCTCTATCCATATCCGGTGGTTG 59.168 47.826 9.27 0.19 37.96 3.77
495 496 4.322801 GGGTTTCTCTATCCATATCCGGTG 60.323 50.000 0.00 0.00 0.00 4.94
496 497 3.838903 GGGTTTCTCTATCCATATCCGGT 59.161 47.826 0.00 0.00 0.00 5.28
500 501 6.672266 TGTGAGGGTTTCTCTATCCATATC 57.328 41.667 0.00 0.00 42.86 1.63
502 503 6.672218 TCTTTGTGAGGGTTTCTCTATCCATA 59.328 38.462 0.00 0.00 42.86 2.74
503 504 5.488919 TCTTTGTGAGGGTTTCTCTATCCAT 59.511 40.000 0.00 0.00 42.86 3.41
504 505 4.844085 TCTTTGTGAGGGTTTCTCTATCCA 59.156 41.667 0.00 0.00 42.86 3.41
506 507 6.043854 AGTCTTTGTGAGGGTTTCTCTATC 57.956 41.667 0.00 0.00 42.86 2.08
508 509 5.148502 AGAGTCTTTGTGAGGGTTTCTCTA 58.851 41.667 0.00 0.00 42.86 2.43
509 510 3.970640 AGAGTCTTTGTGAGGGTTTCTCT 59.029 43.478 0.00 0.00 42.86 3.10
510 511 4.311606 GAGAGTCTTTGTGAGGGTTTCTC 58.688 47.826 0.00 0.00 42.74 2.87
512 513 3.403968 GGAGAGTCTTTGTGAGGGTTTC 58.596 50.000 0.00 0.00 0.00 2.78
515 516 0.969894 CGGAGAGTCTTTGTGAGGGT 59.030 55.000 0.00 0.00 0.00 4.34
516 517 0.247736 CCGGAGAGTCTTTGTGAGGG 59.752 60.000 0.00 0.00 0.00 4.30
519 520 1.410004 ACACCGGAGAGTCTTTGTGA 58.590 50.000 9.46 0.00 0.00 3.58
520 521 2.135933 GAACACCGGAGAGTCTTTGTG 58.864 52.381 9.46 13.15 0.00 3.33
521 522 1.760613 TGAACACCGGAGAGTCTTTGT 59.239 47.619 9.46 0.00 0.00 2.83
522 523 2.135933 GTGAACACCGGAGAGTCTTTG 58.864 52.381 9.46 0.00 0.00 2.77
523 524 2.040178 AGTGAACACCGGAGAGTCTTT 58.960 47.619 9.46 0.00 0.00 2.52
524 525 1.705873 AGTGAACACCGGAGAGTCTT 58.294 50.000 9.46 0.00 0.00 3.01
525 526 2.161030 GTAGTGAACACCGGAGAGTCT 58.839 52.381 9.46 0.00 0.00 3.24
529 530 2.232941 GGATTGTAGTGAACACCGGAGA 59.767 50.000 9.46 0.00 38.00 3.71
530 531 2.618053 GGATTGTAGTGAACACCGGAG 58.382 52.381 9.46 1.26 38.00 4.63
531 532 1.067425 CGGATTGTAGTGAACACCGGA 60.067 52.381 9.46 0.00 41.63 5.14
543 544 2.874701 GCTACTCGACCTACGGATTGTA 59.125 50.000 0.00 0.00 42.82 2.41
547 548 0.883814 CGGCTACTCGACCTACGGAT 60.884 60.000 0.00 0.00 42.82 4.18
548 549 1.522355 CGGCTACTCGACCTACGGA 60.522 63.158 0.00 0.00 42.82 4.69
551 552 1.823041 AGCCGGCTACTCGACCTAC 60.823 63.158 31.86 0.00 0.00 3.18
552 553 1.822613 CAGCCGGCTACTCGACCTA 60.823 63.158 32.30 0.00 0.00 3.08
554 555 4.208686 CCAGCCGGCTACTCGACC 62.209 72.222 32.30 0.00 0.00 4.79
555 556 3.138798 TCCAGCCGGCTACTCGAC 61.139 66.667 32.30 0.00 0.00 4.20
558 559 3.851128 GGGTCCAGCCGGCTACTC 61.851 72.222 32.30 22.05 38.44 2.59
567 568 2.689983 CTGATTATTTGTGGGGTCCAGC 59.310 50.000 0.00 0.00 32.34 4.85
569 570 2.042297 TGCTGATTATTTGTGGGGTCCA 59.958 45.455 0.00 0.00 0.00 4.02
570 571 2.689983 CTGCTGATTATTTGTGGGGTCC 59.310 50.000 0.00 0.00 0.00 4.46
572 573 2.102578 GCTGCTGATTATTTGTGGGGT 58.897 47.619 0.00 0.00 0.00 4.95
573 574 2.101783 TGCTGCTGATTATTTGTGGGG 58.898 47.619 0.00 0.00 0.00 4.96
574 575 3.872511 TTGCTGCTGATTATTTGTGGG 57.127 42.857 0.00 0.00 0.00 4.61
575 576 5.001237 TGATTGCTGCTGATTATTTGTGG 57.999 39.130 0.00 0.00 0.00 4.17
577 578 6.710597 ATCTGATTGCTGCTGATTATTTGT 57.289 33.333 0.00 0.00 0.00 2.83
578 579 8.420374 AAAATCTGATTGCTGCTGATTATTTG 57.580 30.769 3.22 0.00 34.27 2.32
581 582 7.504911 ACCTAAAATCTGATTGCTGCTGATTAT 59.495 33.333 3.22 0.00 34.27 1.28
582 583 6.830324 ACCTAAAATCTGATTGCTGCTGATTA 59.170 34.615 3.22 0.00 34.27 1.75
584 585 5.067413 CACCTAAAATCTGATTGCTGCTGAT 59.933 40.000 3.22 0.00 0.00 2.90
585 586 4.397103 CACCTAAAATCTGATTGCTGCTGA 59.603 41.667 3.22 0.00 0.00 4.26
586 587 4.439700 CCACCTAAAATCTGATTGCTGCTG 60.440 45.833 3.22 0.00 0.00 4.41
587 588 3.698040 CCACCTAAAATCTGATTGCTGCT 59.302 43.478 3.22 0.00 0.00 4.24
590 591 4.263905 TGACCCACCTAAAATCTGATTGCT 60.264 41.667 3.22 0.00 0.00 3.91
592 593 5.008019 CGATGACCCACCTAAAATCTGATTG 59.992 44.000 3.22 0.00 0.00 2.67
593 594 5.126067 CGATGACCCACCTAAAATCTGATT 58.874 41.667 0.00 0.00 0.00 2.57
594 595 4.164221 ACGATGACCCACCTAAAATCTGAT 59.836 41.667 0.00 0.00 0.00 2.90
596 597 3.871594 GACGATGACCCACCTAAAATCTG 59.128 47.826 0.00 0.00 0.00 2.90
597 598 3.517901 TGACGATGACCCACCTAAAATCT 59.482 43.478 0.00 0.00 0.00 2.40
598 599 3.869065 TGACGATGACCCACCTAAAATC 58.131 45.455 0.00 0.00 0.00 2.17
602 603 2.462723 TGATGACGATGACCCACCTAA 58.537 47.619 0.00 0.00 0.00 2.69
603 604 2.153034 TGATGACGATGACCCACCTA 57.847 50.000 0.00 0.00 0.00 3.08
605 606 1.138859 TGATGATGACGATGACCCACC 59.861 52.381 0.00 0.00 0.00 4.61
607 608 2.967887 AGATGATGATGACGATGACCCA 59.032 45.455 0.00 0.00 0.00 4.51
608 609 3.583806 GAGATGATGATGACGATGACCC 58.416 50.000 0.00 0.00 0.00 4.46
609 610 3.006217 TGGAGATGATGATGACGATGACC 59.994 47.826 0.00 0.00 0.00 4.02
611 612 5.479124 AATGGAGATGATGATGACGATGA 57.521 39.130 0.00 0.00 0.00 2.92
709 800 4.824479 TCTGATCTGCTGGATTTACACA 57.176 40.909 0.00 0.00 34.33 3.72
742 837 6.827251 TCCGGTCGATTTATAGTCATAGCTAT 59.173 38.462 0.00 0.00 35.93 2.97
749 844 4.217767 CAGGATCCGGTCGATTTATAGTCA 59.782 45.833 5.98 0.00 0.00 3.41
796 901 8.080417 GCCGATTTACAGTCATAGTTATACTCA 58.920 37.037 0.00 0.00 0.00 3.41
797 902 8.080417 TGCCGATTTACAGTCATAGTTATACTC 58.920 37.037 0.00 0.00 0.00 2.59
798 903 7.948357 TGCCGATTTACAGTCATAGTTATACT 58.052 34.615 0.00 0.00 0.00 2.12
799 904 8.080417 TCTGCCGATTTACAGTCATAGTTATAC 58.920 37.037 0.00 0.00 35.37 1.47
800 905 8.173542 TCTGCCGATTTACAGTCATAGTTATA 57.826 34.615 0.00 0.00 35.37 0.98
801 906 7.050970 TCTGCCGATTTACAGTCATAGTTAT 57.949 36.000 0.00 0.00 35.37 1.89
802 907 6.459670 TCTGCCGATTTACAGTCATAGTTA 57.540 37.500 0.00 0.00 35.37 2.24
803 908 5.339008 TCTGCCGATTTACAGTCATAGTT 57.661 39.130 0.00 0.00 35.37 2.24
804 909 5.537300 ATCTGCCGATTTACAGTCATAGT 57.463 39.130 0.00 0.00 35.37 2.12
805 910 7.946655 TTTATCTGCCGATTTACAGTCATAG 57.053 36.000 0.00 0.00 35.37 2.23
806 911 9.639601 CTATTTATCTGCCGATTTACAGTCATA 57.360 33.333 0.00 0.00 35.37 2.15
807 912 7.118390 GCTATTTATCTGCCGATTTACAGTCAT 59.882 37.037 0.00 0.00 35.37 3.06
808 913 6.423905 GCTATTTATCTGCCGATTTACAGTCA 59.576 38.462 0.00 0.00 35.37 3.41
809 914 6.647067 AGCTATTTATCTGCCGATTTACAGTC 59.353 38.462 0.00 0.00 35.37 3.51
810 915 6.525629 AGCTATTTATCTGCCGATTTACAGT 58.474 36.000 0.00 0.00 35.37 3.55
811 916 8.598924 CATAGCTATTTATCTGCCGATTTACAG 58.401 37.037 2.64 0.00 35.15 2.74
812 917 8.311109 TCATAGCTATTTATCTGCCGATTTACA 58.689 33.333 2.64 0.00 0.00 2.41
813 918 8.596380 GTCATAGCTATTTATCTGCCGATTTAC 58.404 37.037 2.64 0.00 0.00 2.01
814 919 8.531982 AGTCATAGCTATTTATCTGCCGATTTA 58.468 33.333 2.64 0.00 0.00 1.40
815 920 7.332926 CAGTCATAGCTATTTATCTGCCGATTT 59.667 37.037 2.64 0.00 0.00 2.17
816 921 6.815641 CAGTCATAGCTATTTATCTGCCGATT 59.184 38.462 2.64 0.00 0.00 3.34
817 922 6.071108 ACAGTCATAGCTATTTATCTGCCGAT 60.071 38.462 2.64 0.00 0.00 4.18
818 923 5.243954 ACAGTCATAGCTATTTATCTGCCGA 59.756 40.000 2.64 0.00 0.00 5.54
819 924 5.473931 ACAGTCATAGCTATTTATCTGCCG 58.526 41.667 2.64 0.00 0.00 5.69
820 925 8.833231 TTTACAGTCATAGCTATTTATCTGCC 57.167 34.615 2.64 0.00 0.00 4.85
881 986 2.350522 AGATTGTGACTCATGAACCGC 58.649 47.619 0.00 0.00 0.00 5.68
1059 1168 0.387202 AGAGGATGAAGATGTCGGCG 59.613 55.000 0.00 0.00 0.00 6.46
1100 1209 3.936203 GGGACACCACACGGCAGA 61.936 66.667 0.00 0.00 36.50 4.26
1206 1315 1.670083 CCGAACGGGGTTCCACTTC 60.670 63.158 5.25 0.00 39.14 3.01
1315 1434 4.920999 ACGAGTTAGAAACTAGTCCCTCT 58.079 43.478 0.00 1.59 42.57 3.69
1322 1441 5.700846 TCAGCTGAACGAGTTAGAAACTAG 58.299 41.667 15.67 0.00 43.03 2.57
1329 1448 3.791973 ATCCTCAGCTGAACGAGTTAG 57.208 47.619 18.85 3.00 0.00 2.34
1659 1781 0.895530 TGATGAAGGTCCAGTCGTCC 59.104 55.000 10.71 0.00 0.00 4.79
1687 1809 6.482524 AGGCTATGACTATCAGACGGTATTA 58.517 40.000 0.00 0.00 0.00 0.98
1690 1812 4.368565 AGGCTATGACTATCAGACGGTA 57.631 45.455 0.00 0.00 0.00 4.02
1697 1819 6.556495 AGAAAGATGGAAGGCTATGACTATCA 59.444 38.462 0.00 0.00 0.00 2.15
1698 1820 7.003402 AGAAAGATGGAAGGCTATGACTATC 57.997 40.000 0.00 0.00 0.00 2.08
1810 1937 3.315521 CGTCCGCGCTCTCAATCG 61.316 66.667 5.56 0.00 0.00 3.34
1909 2036 2.360483 TGGTGTACGTGACGACCTTAAA 59.640 45.455 13.70 0.00 33.08 1.52
2121 2254 3.930336 TGCTACTGACCAGAACATTCAG 58.070 45.455 3.76 0.00 42.17 3.02
2146 2279 7.640852 TCATTAAGTTAGTGATCTAGACGCTC 58.359 38.462 4.10 0.00 0.00 5.03
2234 2367 9.751542 ACAGTATATGTTGTCAACTATAAGAGC 57.248 33.333 16.45 5.39 39.96 4.09
2275 2478 3.052082 CAGACACCCTTGCCTGCG 61.052 66.667 0.00 0.00 0.00 5.18
2392 2595 3.669036 CTGCAGGTCTCGTCGTCGG 62.669 68.421 5.57 0.00 37.69 4.79
2510 2713 9.411801 GGTATGTACTGTATGTTGTAGATGATG 57.588 37.037 0.00 0.00 0.00 3.07
2519 2722 5.067413 AGGAGACGGTATGTACTGTATGTTG 59.933 44.000 4.16 0.00 45.27 3.33
2524 2727 7.157347 CACTATAGGAGACGGTATGTACTGTA 58.843 42.308 4.43 0.00 45.27 2.74
2526 2729 5.996513 ACACTATAGGAGACGGTATGTACTG 59.003 44.000 4.43 0.00 38.52 2.74
2527 2730 6.043012 AGACACTATAGGAGACGGTATGTACT 59.957 42.308 4.43 0.00 0.00 2.73
2528 2731 6.147492 CAGACACTATAGGAGACGGTATGTAC 59.853 46.154 4.43 0.00 0.00 2.90
2644 4003 9.014297 TGTGTCGAGATGTATCTAATGATATGT 57.986 33.333 0.00 0.00 37.48 2.29
2865 4272 3.688086 GAGTCCAGCGAGTCCACT 58.312 61.111 0.00 0.00 32.98 4.00
2956 4363 1.038681 TTCATGCTTGATGGCCGCAT 61.039 50.000 9.03 9.03 44.53 4.73
3164 4639 3.686016 TGTCTTTGGCCAGTCCTTTATC 58.314 45.455 5.11 0.00 35.26 1.75
3297 4773 0.108041 TTGGCGGTATTTCTCCGGAC 60.108 55.000 0.00 0.00 46.90 4.79
3336 4812 0.537143 TTGCCACTTGGATGCGACTT 60.537 50.000 0.00 0.00 37.39 3.01
3497 4990 2.301346 CATAGGACCAACCAATCTGCC 58.699 52.381 0.00 0.00 42.04 4.85
3743 5236 4.097437 CGTAGAACACTAGGTATGCAAGGA 59.903 45.833 0.00 0.00 0.00 3.36
4174 5669 7.622502 ACCCGGATTACTACCATAAGTAAAT 57.377 36.000 0.73 0.00 43.30 1.40
4532 6034 5.717119 TCAATCTTAAAGGACGGTAGACAC 58.283 41.667 0.00 0.00 0.00 3.67
4642 6192 7.766278 GGTGACAATCATCAAACTAGTAGATGT 59.234 37.037 25.50 15.32 39.96 3.06
4910 6460 3.128242 CCATCTGATGTGCTTTTGTCCTC 59.872 47.826 15.95 0.00 0.00 3.71
4986 6536 2.230508 GTCGTCACTGGGATGAACACTA 59.769 50.000 2.84 0.00 43.00 2.74
5113 6663 2.727123 ATATCGCCCATCCACAACAA 57.273 45.000 0.00 0.00 0.00 2.83
5126 6676 9.503427 GATAAATGGCCAAAAGTATAATATCGC 57.497 33.333 10.96 0.00 0.00 4.58
5297 6847 9.693739 TTACATATCCCAATAGTTGTTCAACAT 57.306 29.630 16.31 6.62 0.00 2.71
5628 7182 7.112528 TGATTCGTTATTCGGTTATGTATGC 57.887 36.000 0.00 0.00 40.32 3.14
5678 7234 6.479884 AGGTGACAGAGCTAATTCTTGATTT 58.520 36.000 0.00 0.00 0.00 2.17
5696 7252 9.134055 AGAGTACATAGTTAATAAGGAGGTGAC 57.866 37.037 0.00 0.00 0.00 3.67
5752 7308 7.492344 GGGTGATAAAGCTAATTTGTGATTTGG 59.508 37.037 0.00 0.00 32.01 3.28
5879 7435 4.576463 GTCCATACTTTCAGTTAGCCCATG 59.424 45.833 0.00 0.00 0.00 3.66
6017 7573 6.233434 TGCCACCTAATAATGATAGAAGCAG 58.767 40.000 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.