Multiple sequence alignment - TraesCS2D01G601500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G601500 chr2D 100.000 3495 0 0 1 3495 651692283 651695777 0.000000e+00 6455.0
1 TraesCS2D01G601500 chr2D 76.000 250 41 14 3225 3465 171435815 171436054 1.030000e-20 111.0
2 TraesCS2D01G601500 chr2A 91.796 2633 124 41 535 3107 775982575 775979975 0.000000e+00 3581.0
3 TraesCS2D01G601500 chr2A 86.449 428 26 17 3092 3495 775979455 775979036 1.150000e-119 440.0
4 TraesCS2D01G601500 chr2A 79.070 258 34 12 3224 3464 3900241 3899987 3.610000e-35 159.0
5 TraesCS2D01G601500 chr2A 93.333 105 6 1 3092 3196 775979735 775979632 1.680000e-33 154.0
6 TraesCS2D01G601500 chr2A 80.272 147 10 7 2351 2497 775980572 775980445 3.710000e-15 93.5
7 TraesCS2D01G601500 chr2A 81.301 123 13 8 3339 3455 643021912 643022030 1.340000e-14 91.6
8 TraesCS2D01G601500 chr2B 90.772 2189 98 34 788 2923 781585918 781583781 0.000000e+00 2828.0
9 TraesCS2D01G601500 chr2B 86.733 603 50 11 2918 3495 781583559 781582962 0.000000e+00 643.0
10 TraesCS2D01G601500 chr2B 76.215 391 44 25 426 779 781586337 781585959 1.000000e-35 161.0
11 TraesCS2D01G601500 chr7D 88.800 375 18 3 80 431 106311526 106311153 4.140000e-119 438.0
12 TraesCS2D01G601500 chr7D 88.441 372 21 1 83 432 550885124 550885495 2.490000e-116 429.0
13 TraesCS2D01G601500 chr7D 89.167 360 16 2 88 425 106023501 106023143 8.960000e-116 427.0
14 TraesCS2D01G601500 chr7D 96.842 95 3 0 335 429 495329913 495329819 3.610000e-35 159.0
15 TraesCS2D01G601500 chr7D 97.802 91 2 0 335 425 126710181 126710091 1.300000e-34 158.0
16 TraesCS2D01G601500 chrUn 88.333 360 20 1 88 425 27572482 27572841 2.510000e-111 412.0
17 TraesCS2D01G601500 chrUn 88.056 360 20 2 88 425 27580582 27580940 4.200000e-109 405.0
18 TraesCS2D01G601500 chrUn 94.400 250 14 0 88 337 68212161 68211912 5.470000e-103 385.0
19 TraesCS2D01G601500 chr6D 87.683 341 38 2 87 427 63764034 63763698 9.090000e-106 394.0
20 TraesCS2D01G601500 chr6D 91.968 249 20 0 88 336 20346502 20346254 2.000000e-92 350.0
21 TraesCS2D01G601500 chr6D 97.849 93 2 0 335 427 302038184 302038276 1.000000e-35 161.0
22 TraesCS2D01G601500 chr6D 97.849 93 2 0 335 427 319353035 319353127 1.000000e-35 161.0
23 TraesCS2D01G601500 chr6D 97.802 91 2 0 335 425 373278837 373278747 1.300000e-34 158.0
24 TraesCS2D01G601500 chr6D 82.090 67 11 1 3349 3414 30242808 30242742 4.870000e-04 56.5
25 TraesCS2D01G601500 chr3D 92.000 250 20 0 88 337 573993178 573992929 5.550000e-93 351.0
26 TraesCS2D01G601500 chr6B 80.193 414 50 12 1564 1972 440982774 440983160 7.390000e-72 281.0
27 TraesCS2D01G601500 chr3A 79.562 411 55 10 1564 1972 499570118 499570501 2.070000e-67 267.0
28 TraesCS2D01G601500 chr3A 88.991 109 4 5 1968 2075 499570537 499570638 1.020000e-25 128.0
29 TraesCS2D01G601500 chr3A 75.519 241 32 18 3223 3455 138704681 138704902 3.710000e-15 93.5
30 TraesCS2D01G601500 chr1D 97.802 91 2 0 335 425 80835413 80835323 1.300000e-34 158.0
31 TraesCS2D01G601500 chr1D 79.389 131 18 8 3338 3465 342115675 342115551 2.240000e-12 84.2
32 TraesCS2D01G601500 chr3B 79.739 153 19 10 3338 3486 448763323 448763179 2.220000e-17 100.0
33 TraesCS2D01G601500 chr7A 75.258 194 37 10 3221 3406 655041087 655040897 8.040000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G601500 chr2D 651692283 651695777 3494 False 6455.000000 6455 100.000000 1 3495 1 chr2D.!!$F2 3494
1 TraesCS2D01G601500 chr2A 775979036 775982575 3539 True 1067.125000 3581 87.962500 535 3495 4 chr2A.!!$R2 2960
2 TraesCS2D01G601500 chr2B 781582962 781586337 3375 True 1210.666667 2828 84.573333 426 3495 3 chr2B.!!$R1 3069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 384 0.025384 GCACGGAAATACGCGGTAAC 59.975 55.0 12.47 0.00 37.37 2.50 F
393 394 0.034863 ACGCGGTAACCATGGGAAAT 60.035 50.0 18.09 1.59 0.00 2.17 F
916 993 0.530288 GCCGTGTGCATTATTTGGGT 59.470 50.0 0.00 0.00 40.77 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2137 0.183492 AAGTTCAGAACCAGCAGGCA 59.817 50.000 9.85 0.0 39.06 4.75 R
2141 2256 1.028130 TGAGCGCGATCTTGATCTCT 58.972 50.000 26.10 0.0 0.00 3.10 R
2528 2690 1.139853 ACATCAAGGAGATCGGAAGCC 59.860 52.381 0.00 0.0 33.72 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.575885 CCTCTCCGAGGTTTAATTGAACA 58.424 43.478 14.30 0.00 44.25 3.18
27 28 5.001232 CCTCTCCGAGGTTTAATTGAACAA 58.999 41.667 14.30 0.00 44.25 2.83
28 29 5.472137 CCTCTCCGAGGTTTAATTGAACAAA 59.528 40.000 14.30 0.00 44.25 2.83
29 30 6.151144 CCTCTCCGAGGTTTAATTGAACAAAT 59.849 38.462 14.30 0.71 44.25 2.32
30 31 6.908825 TCTCCGAGGTTTAATTGAACAAATG 58.091 36.000 14.30 2.19 0.00 2.32
31 32 6.712998 TCTCCGAGGTTTAATTGAACAAATGA 59.287 34.615 14.30 5.32 0.00 2.57
32 33 6.674066 TCCGAGGTTTAATTGAACAAATGAC 58.326 36.000 14.30 0.00 0.00 3.06
33 34 6.263392 TCCGAGGTTTAATTGAACAAATGACA 59.737 34.615 14.30 0.00 0.00 3.58
34 35 6.920758 CCGAGGTTTAATTGAACAAATGACAA 59.079 34.615 14.30 0.00 0.00 3.18
35 36 7.114811 CCGAGGTTTAATTGAACAAATGACAAG 59.885 37.037 14.30 0.00 0.00 3.16
36 37 7.860373 CGAGGTTTAATTGAACAAATGACAAGA 59.140 33.333 14.30 0.00 0.00 3.02
37 38 9.528018 GAGGTTTAATTGAACAAATGACAAGAA 57.472 29.630 14.30 0.00 0.00 2.52
38 39 9.883142 AGGTTTAATTGAACAAATGACAAGAAA 57.117 25.926 14.30 0.00 0.00 2.52
43 44 8.424274 AATTGAACAAATGACAAGAAAGTTCC 57.576 30.769 0.00 0.00 34.55 3.62
44 45 5.901552 TGAACAAATGACAAGAAAGTTCCC 58.098 37.500 0.00 0.00 34.55 3.97
45 46 4.568152 ACAAATGACAAGAAAGTTCCCG 57.432 40.909 0.00 0.00 0.00 5.14
46 47 4.204012 ACAAATGACAAGAAAGTTCCCGA 58.796 39.130 0.00 0.00 0.00 5.14
47 48 4.642885 ACAAATGACAAGAAAGTTCCCGAA 59.357 37.500 0.00 0.00 0.00 4.30
48 49 5.126384 ACAAATGACAAGAAAGTTCCCGAAA 59.874 36.000 0.00 0.00 0.00 3.46
49 50 5.845391 AATGACAAGAAAGTTCCCGAAAA 57.155 34.783 0.00 0.00 0.00 2.29
50 51 5.845391 ATGACAAGAAAGTTCCCGAAAAA 57.155 34.783 0.00 0.00 0.00 1.94
51 52 5.243426 TGACAAGAAAGTTCCCGAAAAAG 57.757 39.130 0.00 0.00 0.00 2.27
52 53 4.041740 ACAAGAAAGTTCCCGAAAAAGC 57.958 40.909 0.00 0.00 0.00 3.51
53 54 3.042887 CAAGAAAGTTCCCGAAAAAGCG 58.957 45.455 0.00 0.00 0.00 4.68
60 61 4.371975 CCGAAAAAGCGGTGGAGA 57.628 55.556 0.00 0.00 46.07 3.71
61 62 2.854522 CCGAAAAAGCGGTGGAGAT 58.145 52.632 0.00 0.00 46.07 2.75
62 63 0.727398 CCGAAAAAGCGGTGGAGATC 59.273 55.000 0.00 0.00 46.07 2.75
63 64 0.370273 CGAAAAAGCGGTGGAGATCG 59.630 55.000 0.00 0.00 0.00 3.69
64 65 1.722011 GAAAAAGCGGTGGAGATCGA 58.278 50.000 0.00 0.00 0.00 3.59
65 66 1.393883 GAAAAAGCGGTGGAGATCGAC 59.606 52.381 0.00 0.00 0.00 4.20
66 67 0.608640 AAAAGCGGTGGAGATCGACT 59.391 50.000 0.00 0.00 0.00 4.18
67 68 0.608640 AAAGCGGTGGAGATCGACTT 59.391 50.000 0.00 0.00 0.00 3.01
68 69 0.108615 AAGCGGTGGAGATCGACTTG 60.109 55.000 0.00 0.00 0.00 3.16
69 70 1.519455 GCGGTGGAGATCGACTTGG 60.519 63.158 0.00 0.00 0.00 3.61
70 71 1.519455 CGGTGGAGATCGACTTGGC 60.519 63.158 0.00 0.00 0.00 4.52
71 72 1.596934 GGTGGAGATCGACTTGGCA 59.403 57.895 0.00 0.00 0.00 4.92
72 73 0.460987 GGTGGAGATCGACTTGGCAG 60.461 60.000 0.00 0.00 0.00 4.85
73 74 0.460987 GTGGAGATCGACTTGGCAGG 60.461 60.000 0.00 0.00 0.00 4.85
74 75 1.144936 GGAGATCGACTTGGCAGGG 59.855 63.158 0.44 0.00 0.00 4.45
75 76 1.617947 GGAGATCGACTTGGCAGGGT 61.618 60.000 0.44 0.00 0.00 4.34
76 77 0.460987 GAGATCGACTTGGCAGGGTG 60.461 60.000 0.44 0.00 0.00 4.61
77 78 1.194781 AGATCGACTTGGCAGGGTGT 61.195 55.000 0.44 0.00 0.00 4.16
78 79 0.321653 GATCGACTTGGCAGGGTGTT 60.322 55.000 0.44 0.00 0.00 3.32
79 80 0.981183 ATCGACTTGGCAGGGTGTTA 59.019 50.000 0.44 0.00 0.00 2.41
80 81 0.981183 TCGACTTGGCAGGGTGTTAT 59.019 50.000 0.44 0.00 0.00 1.89
81 82 2.181125 TCGACTTGGCAGGGTGTTATA 58.819 47.619 0.44 0.00 0.00 0.98
82 83 2.167693 TCGACTTGGCAGGGTGTTATAG 59.832 50.000 0.44 0.00 0.00 1.31
83 84 2.289565 GACTTGGCAGGGTGTTATAGC 58.710 52.381 0.44 0.00 0.00 2.97
84 85 1.633432 ACTTGGCAGGGTGTTATAGCA 59.367 47.619 0.44 0.00 0.00 3.49
85 86 2.041081 ACTTGGCAGGGTGTTATAGCAA 59.959 45.455 0.44 0.00 0.00 3.91
86 87 2.418368 TGGCAGGGTGTTATAGCAAG 57.582 50.000 0.00 0.00 0.00 4.01
87 88 1.025041 GGCAGGGTGTTATAGCAAGC 58.975 55.000 0.00 0.00 0.00 4.01
88 89 1.681780 GGCAGGGTGTTATAGCAAGCA 60.682 52.381 0.00 0.00 32.09 3.91
89 90 2.091541 GCAGGGTGTTATAGCAAGCAA 58.908 47.619 0.00 0.00 0.00 3.91
90 91 2.098117 GCAGGGTGTTATAGCAAGCAAG 59.902 50.000 0.00 0.00 0.00 4.01
91 92 2.684881 CAGGGTGTTATAGCAAGCAAGG 59.315 50.000 0.00 0.00 0.00 3.61
92 93 2.308866 AGGGTGTTATAGCAAGCAAGGT 59.691 45.455 0.00 0.00 0.00 3.50
93 94 3.089284 GGGTGTTATAGCAAGCAAGGTT 58.911 45.455 0.00 0.00 0.00 3.50
94 95 3.509967 GGGTGTTATAGCAAGCAAGGTTT 59.490 43.478 0.00 0.00 0.00 3.27
95 96 4.021456 GGGTGTTATAGCAAGCAAGGTTTT 60.021 41.667 0.00 0.00 0.00 2.43
96 97 4.923281 GGTGTTATAGCAAGCAAGGTTTTG 59.077 41.667 0.00 0.00 37.36 2.44
97 98 4.923281 GTGTTATAGCAAGCAAGGTTTTGG 59.077 41.667 0.00 0.00 34.79 3.28
98 99 4.586841 TGTTATAGCAAGCAAGGTTTTGGT 59.413 37.500 0.00 0.00 46.37 3.67
104 105 2.351706 AGCAAGGTTTTGGTTACCGA 57.648 45.000 0.00 0.00 42.03 4.69
105 106 2.657143 AGCAAGGTTTTGGTTACCGAA 58.343 42.857 0.00 0.00 42.03 4.30
106 107 3.227614 AGCAAGGTTTTGGTTACCGAAT 58.772 40.909 4.72 0.00 42.03 3.34
107 108 3.005367 AGCAAGGTTTTGGTTACCGAATG 59.995 43.478 4.72 1.86 42.03 2.67
108 109 3.004944 GCAAGGTTTTGGTTACCGAATGA 59.995 43.478 4.72 0.00 40.69 2.57
109 110 4.794169 CAAGGTTTTGGTTACCGAATGAG 58.206 43.478 4.72 0.00 40.69 2.90
110 111 3.418047 AGGTTTTGGTTACCGAATGAGG 58.582 45.455 4.72 0.00 40.69 3.86
111 112 2.094906 GGTTTTGGTTACCGAATGAGGC 60.095 50.000 4.72 0.00 33.69 4.70
112 113 2.554893 GTTTTGGTTACCGAATGAGGCA 59.445 45.455 4.72 0.00 33.69 4.75
113 114 2.570415 TTGGTTACCGAATGAGGCAA 57.430 45.000 0.00 0.00 33.69 4.52
114 115 2.799126 TGGTTACCGAATGAGGCAAT 57.201 45.000 0.00 0.00 33.69 3.56
115 116 3.080300 TGGTTACCGAATGAGGCAATT 57.920 42.857 0.00 0.00 33.69 2.32
116 117 3.426615 TGGTTACCGAATGAGGCAATTT 58.573 40.909 0.00 0.00 33.69 1.82
117 118 3.829601 TGGTTACCGAATGAGGCAATTTT 59.170 39.130 0.00 0.00 33.69 1.82
118 119 5.010933 TGGTTACCGAATGAGGCAATTTTA 58.989 37.500 0.00 0.00 33.69 1.52
119 120 5.106078 TGGTTACCGAATGAGGCAATTTTAC 60.106 40.000 0.00 0.00 33.69 2.01
120 121 5.337554 GTTACCGAATGAGGCAATTTTACC 58.662 41.667 0.00 0.00 33.69 2.85
121 122 2.758423 ACCGAATGAGGCAATTTTACCC 59.242 45.455 0.00 0.00 33.69 3.69
122 123 2.757868 CCGAATGAGGCAATTTTACCCA 59.242 45.455 0.00 0.00 0.00 4.51
123 124 3.194542 CCGAATGAGGCAATTTTACCCAA 59.805 43.478 0.00 0.00 0.00 4.12
124 125 4.423732 CGAATGAGGCAATTTTACCCAAG 58.576 43.478 0.00 0.00 0.00 3.61
125 126 4.677779 CGAATGAGGCAATTTTACCCAAGG 60.678 45.833 0.00 0.00 0.00 3.61
126 127 2.534990 TGAGGCAATTTTACCCAAGGG 58.465 47.619 2.91 2.91 42.03 3.95
137 138 4.434483 CCAAGGGGGCTGGTAAAC 57.566 61.111 0.00 0.00 0.00 2.01
138 139 1.462928 CCAAGGGGGCTGGTAAACA 59.537 57.895 0.00 0.00 0.00 2.83
139 140 0.041090 CCAAGGGGGCTGGTAAACAT 59.959 55.000 0.00 0.00 0.00 2.71
140 141 1.185315 CAAGGGGGCTGGTAAACATG 58.815 55.000 0.00 0.00 0.00 3.21
141 142 0.041090 AAGGGGGCTGGTAAACATGG 59.959 55.000 0.00 0.00 0.00 3.66
142 143 1.146544 AGGGGGCTGGTAAACATGGT 61.147 55.000 0.00 0.00 0.00 3.55
143 144 0.252057 GGGGGCTGGTAAACATGGTT 60.252 55.000 0.00 0.00 0.00 3.67
144 145 1.006162 GGGGGCTGGTAAACATGGTTA 59.994 52.381 0.00 0.00 0.00 2.85
145 146 2.097036 GGGGCTGGTAAACATGGTTAC 58.903 52.381 22.97 22.97 33.91 2.50
151 152 2.905959 GTAAACATGGTTACCACGGC 57.094 50.000 20.94 0.00 35.80 5.68
152 153 2.429478 GTAAACATGGTTACCACGGCT 58.571 47.619 20.94 0.00 35.80 5.52
153 154 2.863132 AAACATGGTTACCACGGCTA 57.137 45.000 6.10 0.00 35.80 3.93
154 155 2.103537 AACATGGTTACCACGGCTAC 57.896 50.000 6.10 0.00 35.80 3.58
155 156 0.251073 ACATGGTTACCACGGCTACC 59.749 55.000 6.10 1.22 35.80 3.18
156 157 0.250793 CATGGTTACCACGGCTACCA 59.749 55.000 6.10 11.15 44.17 3.25
157 158 0.985760 ATGGTTACCACGGCTACCAA 59.014 50.000 6.10 0.04 43.35 3.67
158 159 0.322322 TGGTTACCACGGCTACCAAG 59.678 55.000 0.00 0.00 37.71 3.61
159 160 0.392060 GGTTACCACGGCTACCAAGG 60.392 60.000 0.00 0.00 0.00 3.61
160 161 0.609662 GTTACCACGGCTACCAAGGA 59.390 55.000 0.00 0.00 0.00 3.36
161 162 1.002315 GTTACCACGGCTACCAAGGAA 59.998 52.381 0.00 0.00 0.00 3.36
162 163 1.575419 TACCACGGCTACCAAGGAAT 58.425 50.000 0.00 0.00 0.00 3.01
163 164 1.575419 ACCACGGCTACCAAGGAATA 58.425 50.000 0.00 0.00 0.00 1.75
164 165 1.208776 ACCACGGCTACCAAGGAATAC 59.791 52.381 0.00 0.00 0.00 1.89
165 166 1.474498 CCACGGCTACCAAGGAATACC 60.474 57.143 0.00 0.00 0.00 2.73
166 167 0.462789 ACGGCTACCAAGGAATACCG 59.537 55.000 11.10 11.10 44.49 4.02
167 168 0.748450 CGGCTACCAAGGAATACCGA 59.252 55.000 0.00 0.00 41.61 4.69
168 169 1.269621 CGGCTACCAAGGAATACCGAG 60.270 57.143 0.00 0.00 41.61 4.63
169 170 2.037144 GGCTACCAAGGAATACCGAGA 58.963 52.381 0.00 0.00 41.83 4.04
170 171 2.433239 GGCTACCAAGGAATACCGAGAA 59.567 50.000 0.00 0.00 41.83 2.87
171 172 3.071167 GGCTACCAAGGAATACCGAGAAT 59.929 47.826 0.00 0.00 41.83 2.40
172 173 4.282703 GGCTACCAAGGAATACCGAGAATA 59.717 45.833 0.00 0.00 41.83 1.75
173 174 5.046520 GGCTACCAAGGAATACCGAGAATAT 60.047 44.000 0.00 0.00 41.83 1.28
174 175 6.465084 GCTACCAAGGAATACCGAGAATATT 58.535 40.000 0.00 0.00 41.83 1.28
175 176 6.935208 GCTACCAAGGAATACCGAGAATATTT 59.065 38.462 0.00 0.00 41.83 1.40
176 177 7.117956 GCTACCAAGGAATACCGAGAATATTTC 59.882 40.741 0.00 0.00 41.83 2.17
177 178 5.989777 ACCAAGGAATACCGAGAATATTTCG 59.010 40.000 10.96 10.96 41.83 3.46
178 179 6.183360 ACCAAGGAATACCGAGAATATTTCGA 60.183 38.462 16.51 0.00 40.36 3.71
179 180 6.704493 CCAAGGAATACCGAGAATATTTCGAA 59.296 38.462 16.51 0.00 40.36 3.71
180 181 7.307219 CCAAGGAATACCGAGAATATTTCGAAC 60.307 40.741 16.51 0.00 40.36 3.95
181 182 5.919141 AGGAATACCGAGAATATTTCGAACG 59.081 40.000 16.51 0.00 40.36 3.95
182 183 5.916883 GGAATACCGAGAATATTTCGAACGA 59.083 40.000 16.51 0.00 40.36 3.85
183 184 6.418819 GGAATACCGAGAATATTTCGAACGAA 59.581 38.462 16.51 5.53 40.36 3.85
184 185 7.115947 GGAATACCGAGAATATTTCGAACGAAT 59.884 37.037 16.51 0.00 40.36 3.34
185 186 7.941795 ATACCGAGAATATTTCGAACGAATT 57.058 32.000 16.51 9.48 40.36 2.17
186 187 6.657836 ACCGAGAATATTTCGAACGAATTT 57.342 33.333 16.51 5.50 40.36 1.82
187 188 7.068692 ACCGAGAATATTTCGAACGAATTTT 57.931 32.000 16.51 5.19 40.36 1.82
188 189 8.188531 ACCGAGAATATTTCGAACGAATTTTA 57.811 30.769 16.51 4.41 40.36 1.52
189 190 8.823818 ACCGAGAATATTTCGAACGAATTTTAT 58.176 29.630 16.51 4.20 40.36 1.40
227 228 9.743057 AAATTCAAATAAGTGAATGAACGAACA 57.257 25.926 1.41 0.00 45.42 3.18
228 229 9.912634 AATTCAAATAAGTGAATGAACGAACAT 57.087 25.926 1.41 0.00 45.42 2.71
229 230 9.912634 ATTCAAATAAGTGAATGAACGAACATT 57.087 25.926 10.38 10.38 44.65 2.71
243 244 3.320673 GAACATTCGAACCAGAGACCT 57.679 47.619 0.00 0.00 0.00 3.85
244 245 3.254892 GAACATTCGAACCAGAGACCTC 58.745 50.000 0.00 0.00 0.00 3.85
245 246 2.530701 ACATTCGAACCAGAGACCTCT 58.469 47.619 0.00 0.00 41.37 3.69
246 247 2.494073 ACATTCGAACCAGAGACCTCTC 59.506 50.000 0.00 0.00 43.17 3.20
247 248 2.287977 TTCGAACCAGAGACCTCTCA 57.712 50.000 5.13 0.00 45.21 3.27
248 249 2.287977 TCGAACCAGAGACCTCTCAA 57.712 50.000 5.13 0.00 45.21 3.02
249 250 2.594131 TCGAACCAGAGACCTCTCAAA 58.406 47.619 5.13 0.00 45.21 2.69
250 251 2.963101 TCGAACCAGAGACCTCTCAAAA 59.037 45.455 5.13 0.00 45.21 2.44
251 252 3.060602 CGAACCAGAGACCTCTCAAAAC 58.939 50.000 5.13 0.00 45.21 2.43
252 253 3.492656 CGAACCAGAGACCTCTCAAAACA 60.493 47.826 5.13 0.00 45.21 2.83
253 254 4.451900 GAACCAGAGACCTCTCAAAACAA 58.548 43.478 5.13 0.00 45.21 2.83
254 255 4.078639 ACCAGAGACCTCTCAAAACAAG 57.921 45.455 5.13 0.00 45.21 3.16
255 256 3.711704 ACCAGAGACCTCTCAAAACAAGA 59.288 43.478 5.13 0.00 45.21 3.02
256 257 4.164221 ACCAGAGACCTCTCAAAACAAGAA 59.836 41.667 5.13 0.00 45.21 2.52
257 258 4.513318 CCAGAGACCTCTCAAAACAAGAAC 59.487 45.833 5.13 0.00 45.21 3.01
258 259 5.363939 CAGAGACCTCTCAAAACAAGAACT 58.636 41.667 5.13 0.00 45.21 3.01
259 260 6.463049 CCAGAGACCTCTCAAAACAAGAACTA 60.463 42.308 5.13 0.00 45.21 2.24
260 261 6.644592 CAGAGACCTCTCAAAACAAGAACTAG 59.355 42.308 5.13 0.00 45.21 2.57
261 262 5.859495 AGACCTCTCAAAACAAGAACTAGG 58.141 41.667 0.00 0.00 0.00 3.02
262 263 5.367060 AGACCTCTCAAAACAAGAACTAGGT 59.633 40.000 0.00 0.00 0.00 3.08
263 264 6.002653 ACCTCTCAAAACAAGAACTAGGTT 57.997 37.500 0.00 0.00 0.00 3.50
264 265 6.424032 ACCTCTCAAAACAAGAACTAGGTTT 58.576 36.000 0.00 0.00 36.37 3.27
265 266 6.542735 ACCTCTCAAAACAAGAACTAGGTTTC 59.457 38.462 0.00 0.00 33.91 2.78
266 267 6.768381 CCTCTCAAAACAAGAACTAGGTTTCT 59.232 38.462 0.00 0.00 37.44 2.52
267 268 7.931948 CCTCTCAAAACAAGAACTAGGTTTCTA 59.068 37.037 0.00 0.00 34.60 2.10
268 269 9.495572 CTCTCAAAACAAGAACTAGGTTTCTAT 57.504 33.333 0.00 0.00 34.60 1.98
269 270 9.490379 TCTCAAAACAAGAACTAGGTTTCTATC 57.510 33.333 0.00 0.00 34.60 2.08
270 271 9.273016 CTCAAAACAAGAACTAGGTTTCTATCA 57.727 33.333 0.00 0.00 34.60 2.15
271 272 9.621629 TCAAAACAAGAACTAGGTTTCTATCAA 57.378 29.630 0.00 0.00 34.60 2.57
272 273 9.665264 CAAAACAAGAACTAGGTTTCTATCAAC 57.335 33.333 0.00 0.00 34.60 3.18
273 274 8.974060 AAACAAGAACTAGGTTTCTATCAACA 57.026 30.769 0.00 0.00 34.60 3.33
274 275 7.964604 ACAAGAACTAGGTTTCTATCAACAC 57.035 36.000 0.00 0.00 34.60 3.32
275 276 6.645415 ACAAGAACTAGGTTTCTATCAACACG 59.355 38.462 0.00 0.00 34.60 4.49
276 277 6.342338 AGAACTAGGTTTCTATCAACACGT 57.658 37.500 0.00 0.00 33.89 4.49
277 278 6.388278 AGAACTAGGTTTCTATCAACACGTC 58.612 40.000 0.00 0.00 33.89 4.34
278 279 5.717078 ACTAGGTTTCTATCAACACGTCA 57.283 39.130 0.00 0.00 0.00 4.35
279 280 5.710984 ACTAGGTTTCTATCAACACGTCAG 58.289 41.667 0.00 0.00 0.00 3.51
280 281 4.866508 AGGTTTCTATCAACACGTCAGA 57.133 40.909 0.00 0.00 0.00 3.27
281 282 5.209818 AGGTTTCTATCAACACGTCAGAA 57.790 39.130 0.00 0.00 0.00 3.02
282 283 4.989168 AGGTTTCTATCAACACGTCAGAAC 59.011 41.667 0.00 0.00 0.00 3.01
283 284 4.151867 GGTTTCTATCAACACGTCAGAACC 59.848 45.833 0.00 0.00 0.00 3.62
284 285 4.594123 TTCTATCAACACGTCAGAACCA 57.406 40.909 0.00 0.00 0.00 3.67
285 286 4.594123 TCTATCAACACGTCAGAACCAA 57.406 40.909 0.00 0.00 0.00 3.67
286 287 4.304110 TCTATCAACACGTCAGAACCAAC 58.696 43.478 0.00 0.00 0.00 3.77
287 288 2.684001 TCAACACGTCAGAACCAACT 57.316 45.000 0.00 0.00 0.00 3.16
288 289 2.546778 TCAACACGTCAGAACCAACTC 58.453 47.619 0.00 0.00 0.00 3.01
289 290 2.167693 TCAACACGTCAGAACCAACTCT 59.832 45.455 0.00 0.00 0.00 3.24
290 291 2.510768 ACACGTCAGAACCAACTCTC 57.489 50.000 0.00 0.00 0.00 3.20
291 292 1.754803 ACACGTCAGAACCAACTCTCA 59.245 47.619 0.00 0.00 0.00 3.27
292 293 2.365617 ACACGTCAGAACCAACTCTCAT 59.634 45.455 0.00 0.00 0.00 2.90
293 294 2.733552 CACGTCAGAACCAACTCTCATG 59.266 50.000 0.00 0.00 0.00 3.07
294 295 2.289072 ACGTCAGAACCAACTCTCATGG 60.289 50.000 0.00 0.00 43.84 3.66
295 296 2.079925 GTCAGAACCAACTCTCATGGC 58.920 52.381 0.00 0.00 41.89 4.40
296 297 1.699083 TCAGAACCAACTCTCATGGCA 59.301 47.619 0.00 0.00 41.89 4.92
297 298 2.306805 TCAGAACCAACTCTCATGGCAT 59.693 45.455 0.00 0.00 41.89 4.40
298 299 3.087031 CAGAACCAACTCTCATGGCATT 58.913 45.455 0.00 0.00 41.89 3.56
299 300 4.019411 TCAGAACCAACTCTCATGGCATTA 60.019 41.667 0.00 0.00 41.89 1.90
300 301 4.701651 CAGAACCAACTCTCATGGCATTAA 59.298 41.667 0.00 0.00 41.89 1.40
301 302 5.359009 CAGAACCAACTCTCATGGCATTAAT 59.641 40.000 0.00 0.00 41.89 1.40
302 303 5.954150 AGAACCAACTCTCATGGCATTAATT 59.046 36.000 0.00 0.00 41.89 1.40
303 304 7.067372 CAGAACCAACTCTCATGGCATTAATTA 59.933 37.037 0.00 0.00 41.89 1.40
304 305 6.949352 ACCAACTCTCATGGCATTAATTAG 57.051 37.500 0.00 0.00 41.89 1.73
305 306 6.662755 ACCAACTCTCATGGCATTAATTAGA 58.337 36.000 0.00 0.00 41.89 2.10
306 307 6.543831 ACCAACTCTCATGGCATTAATTAGAC 59.456 38.462 0.00 0.00 41.89 2.59
307 308 6.016777 CCAACTCTCATGGCATTAATTAGACC 60.017 42.308 0.00 0.00 0.00 3.85
308 309 5.625150 ACTCTCATGGCATTAATTAGACCC 58.375 41.667 0.00 0.00 0.00 4.46
309 310 5.370880 ACTCTCATGGCATTAATTAGACCCT 59.629 40.000 0.00 0.00 0.00 4.34
310 311 6.558775 ACTCTCATGGCATTAATTAGACCCTA 59.441 38.462 0.00 0.00 0.00 3.53
311 312 6.769512 TCTCATGGCATTAATTAGACCCTAC 58.230 40.000 0.00 0.00 0.00 3.18
312 313 5.547465 TCATGGCATTAATTAGACCCTACG 58.453 41.667 0.00 0.00 0.00 3.51
313 314 5.071250 TCATGGCATTAATTAGACCCTACGT 59.929 40.000 0.00 0.00 0.00 3.57
314 315 6.268158 TCATGGCATTAATTAGACCCTACGTA 59.732 38.462 0.00 0.00 0.00 3.57
315 316 5.846203 TGGCATTAATTAGACCCTACGTAC 58.154 41.667 0.00 0.00 0.00 3.67
316 317 5.599656 TGGCATTAATTAGACCCTACGTACT 59.400 40.000 0.00 0.00 0.00 2.73
317 318 6.098695 TGGCATTAATTAGACCCTACGTACTT 59.901 38.462 0.00 0.00 0.00 2.24
318 319 6.988580 GGCATTAATTAGACCCTACGTACTTT 59.011 38.462 0.00 0.00 0.00 2.66
319 320 8.143835 GGCATTAATTAGACCCTACGTACTTTA 58.856 37.037 0.00 0.00 0.00 1.85
320 321 8.972349 GCATTAATTAGACCCTACGTACTTTAC 58.028 37.037 0.00 0.00 0.00 2.01
329 330 9.632638 AGACCCTACGTACTTTACTATAAATCA 57.367 33.333 0.00 0.00 0.00 2.57
332 333 9.189723 CCCTACGTACTTTACTATAAATCAAGC 57.810 37.037 0.00 0.00 0.00 4.01
333 334 8.899776 CCTACGTACTTTACTATAAATCAAGCG 58.100 37.037 0.00 0.00 0.00 4.68
334 335 9.443283 CTACGTACTTTACTATAAATCAAGCGT 57.557 33.333 0.00 0.00 0.00 5.07
335 336 8.693542 ACGTACTTTACTATAAATCAAGCGTT 57.306 30.769 0.00 0.00 0.00 4.84
336 337 9.143631 ACGTACTTTACTATAAATCAAGCGTTT 57.856 29.630 0.00 0.00 0.00 3.60
337 338 9.962759 CGTACTTTACTATAAATCAAGCGTTTT 57.037 29.630 0.00 0.00 0.00 2.43
340 341 9.124807 ACTTTACTATAAATCAAGCGTTTTTGC 57.875 29.630 0.00 0.00 0.00 3.68
349 350 2.723124 AGCGTTTTTGCTTGGTATGG 57.277 45.000 0.00 0.00 44.46 2.74
350 351 2.235016 AGCGTTTTTGCTTGGTATGGA 58.765 42.857 0.00 0.00 44.46 3.41
351 352 2.228822 AGCGTTTTTGCTTGGTATGGAG 59.771 45.455 0.00 0.00 44.46 3.86
352 353 2.227865 GCGTTTTTGCTTGGTATGGAGA 59.772 45.455 0.00 0.00 0.00 3.71
353 354 3.119495 GCGTTTTTGCTTGGTATGGAGAT 60.119 43.478 0.00 0.00 0.00 2.75
354 355 4.618227 GCGTTTTTGCTTGGTATGGAGATT 60.618 41.667 0.00 0.00 0.00 2.40
355 356 5.469479 CGTTTTTGCTTGGTATGGAGATTT 58.531 37.500 0.00 0.00 0.00 2.17
356 357 6.616947 CGTTTTTGCTTGGTATGGAGATTTA 58.383 36.000 0.00 0.00 0.00 1.40
357 358 6.526674 CGTTTTTGCTTGGTATGGAGATTTAC 59.473 38.462 0.00 0.00 0.00 2.01
358 359 6.524101 TTTTGCTTGGTATGGAGATTTACC 57.476 37.500 0.00 0.00 38.68 2.85
359 360 3.804036 TGCTTGGTATGGAGATTTACCG 58.196 45.455 0.00 0.00 40.68 4.02
360 361 3.452990 TGCTTGGTATGGAGATTTACCGA 59.547 43.478 0.00 0.00 40.68 4.69
361 362 4.058817 GCTTGGTATGGAGATTTACCGAG 58.941 47.826 10.70 10.70 46.42 4.63
362 363 4.632153 CTTGGTATGGAGATTTACCGAGG 58.368 47.826 8.05 0.00 42.63 4.63
363 364 2.969950 TGGTATGGAGATTTACCGAGGG 59.030 50.000 0.00 0.00 40.68 4.30
364 365 2.302157 GGTATGGAGATTTACCGAGGGG 59.698 54.545 0.00 0.00 40.11 4.79
365 366 0.765510 ATGGAGATTTACCGAGGGGC 59.234 55.000 0.00 0.00 36.48 5.80
366 367 0.619255 TGGAGATTTACCGAGGGGCA 60.619 55.000 0.00 0.00 36.48 5.36
367 368 0.179054 GGAGATTTACCGAGGGGCAC 60.179 60.000 0.00 0.00 36.48 5.01
368 369 0.529992 GAGATTTACCGAGGGGCACG 60.530 60.000 0.00 0.00 36.48 5.34
375 376 4.120085 CGAGGGGCACGGAAATAC 57.880 61.111 0.00 0.00 0.00 1.89
376 377 1.881252 CGAGGGGCACGGAAATACG 60.881 63.158 0.00 0.00 40.31 3.06
377 378 2.124860 AGGGGCACGGAAATACGC 60.125 61.111 0.00 0.00 37.37 4.42
378 379 3.569690 GGGGCACGGAAATACGCG 61.570 66.667 3.53 3.53 37.37 6.01
379 380 3.569690 GGGCACGGAAATACGCGG 61.570 66.667 12.47 0.00 37.37 6.46
380 381 2.816520 GGCACGGAAATACGCGGT 60.817 61.111 12.47 0.00 37.37 5.68
381 382 1.519013 GGCACGGAAATACGCGGTA 60.519 57.895 12.47 0.25 37.37 4.02
382 383 1.083242 GGCACGGAAATACGCGGTAA 61.083 55.000 12.47 0.00 37.37 2.85
383 384 0.025384 GCACGGAAATACGCGGTAAC 59.975 55.000 12.47 0.00 37.37 2.50
384 385 0.646895 CACGGAAATACGCGGTAACC 59.353 55.000 12.47 6.30 37.37 2.85
385 386 0.246086 ACGGAAATACGCGGTAACCA 59.754 50.000 12.47 0.00 37.37 3.67
386 387 1.134729 ACGGAAATACGCGGTAACCAT 60.135 47.619 12.47 0.00 37.37 3.55
387 388 1.259507 CGGAAATACGCGGTAACCATG 59.740 52.381 12.47 0.00 0.00 3.66
388 389 1.600485 GGAAATACGCGGTAACCATGG 59.400 52.381 11.19 11.19 0.00 3.66
389 390 1.600485 GAAATACGCGGTAACCATGGG 59.400 52.381 18.09 0.00 0.00 4.00
390 391 0.831966 AATACGCGGTAACCATGGGA 59.168 50.000 18.09 0.00 0.00 4.37
391 392 0.831966 ATACGCGGTAACCATGGGAA 59.168 50.000 18.09 0.00 0.00 3.97
392 393 0.612229 TACGCGGTAACCATGGGAAA 59.388 50.000 18.09 0.00 0.00 3.13
393 394 0.034863 ACGCGGTAACCATGGGAAAT 60.035 50.000 18.09 1.59 0.00 2.17
394 395 0.661020 CGCGGTAACCATGGGAAATC 59.339 55.000 18.09 0.00 0.00 2.17
395 396 1.745827 CGCGGTAACCATGGGAAATCT 60.746 52.381 18.09 0.00 0.00 2.40
396 397 1.947456 GCGGTAACCATGGGAAATCTC 59.053 52.381 18.09 0.00 0.00 2.75
397 398 2.210116 CGGTAACCATGGGAAATCTCG 58.790 52.381 18.09 6.68 0.00 4.04
398 399 2.159014 CGGTAACCATGGGAAATCTCGA 60.159 50.000 18.09 0.00 0.00 4.04
399 400 3.680475 CGGTAACCATGGGAAATCTCGAA 60.680 47.826 18.09 0.00 0.00 3.71
400 401 4.266714 GGTAACCATGGGAAATCTCGAAA 58.733 43.478 18.09 0.00 0.00 3.46
401 402 4.887655 GGTAACCATGGGAAATCTCGAAAT 59.112 41.667 18.09 0.00 0.00 2.17
402 403 5.359860 GGTAACCATGGGAAATCTCGAAATT 59.640 40.000 18.09 0.00 0.00 1.82
403 404 6.127451 GGTAACCATGGGAAATCTCGAAATTT 60.127 38.462 18.09 0.00 0.00 1.82
404 405 5.582689 ACCATGGGAAATCTCGAAATTTC 57.417 39.130 18.09 14.57 42.41 2.17
418 419 4.486574 GAAATTTCGACCGGTAACCAAA 57.513 40.909 7.34 4.53 0.00 3.28
419 420 4.857799 GAAATTTCGACCGGTAACCAAAA 58.142 39.130 7.34 4.39 0.00 2.44
420 421 3.902261 ATTTCGACCGGTAACCAAAAC 57.098 42.857 7.34 0.00 0.00 2.43
421 422 1.592064 TTCGACCGGTAACCAAAACC 58.408 50.000 7.34 0.00 0.00 3.27
422 423 0.758123 TCGACCGGTAACCAAAACCT 59.242 50.000 7.34 0.00 34.66 3.50
423 424 1.140652 TCGACCGGTAACCAAAACCTT 59.859 47.619 7.34 0.00 34.66 3.50
424 425 1.264826 CGACCGGTAACCAAAACCTTG 59.735 52.381 7.34 0.00 34.66 3.61
430 431 3.754323 CGGTAACCAAAACCTTGATAGCA 59.246 43.478 0.00 0.00 34.14 3.49
431 432 4.216687 CGGTAACCAAAACCTTGATAGCAA 59.783 41.667 0.00 0.00 34.14 3.91
452 453 0.605319 CCGTGCTTTGCTCCTACCAA 60.605 55.000 0.00 0.00 0.00 3.67
472 480 2.526432 AGACTGGTATCTCACGGTTGT 58.474 47.619 0.00 0.00 0.00 3.32
477 485 3.404899 TGGTATCTCACGGTTGTTTTCC 58.595 45.455 0.00 0.00 0.00 3.13
520 529 1.203994 CGTGGTGTTCCTCGGAGTAAT 59.796 52.381 4.02 0.00 44.01 1.89
530 551 2.656002 CTCGGAGTAATGAGGAGGTCA 58.344 52.381 0.00 0.00 40.38 4.02
632 664 7.265647 TGAATTGTTGATTTTCTTGGTCGTA 57.734 32.000 0.00 0.00 0.00 3.43
717 749 4.202161 ACTGTCACAGAGAGTAAACACCTG 60.202 45.833 13.14 0.00 34.38 4.00
718 750 3.958147 TGTCACAGAGAGTAAACACCTGA 59.042 43.478 0.00 0.00 0.00 3.86
719 751 4.404394 TGTCACAGAGAGTAAACACCTGAA 59.596 41.667 0.00 0.00 0.00 3.02
720 752 4.985409 GTCACAGAGAGTAAACACCTGAAG 59.015 45.833 0.00 0.00 0.00 3.02
721 753 4.893524 TCACAGAGAGTAAACACCTGAAGA 59.106 41.667 0.00 0.00 0.00 2.87
726 758 7.233757 ACAGAGAGTAAACACCTGAAGATAAGT 59.766 37.037 0.00 0.00 0.00 2.24
727 759 8.091449 CAGAGAGTAAACACCTGAAGATAAGTT 58.909 37.037 0.00 0.00 0.00 2.66
728 760 8.652290 AGAGAGTAAACACCTGAAGATAAGTTT 58.348 33.333 0.00 0.00 34.11 2.66
729 761 8.608844 AGAGTAAACACCTGAAGATAAGTTTG 57.391 34.615 0.00 0.00 32.23 2.93
733 765 4.460263 ACACCTGAAGATAAGTTTGTGCA 58.540 39.130 0.00 0.00 0.00 4.57
735 767 4.074970 ACCTGAAGATAAGTTTGTGCAGG 58.925 43.478 0.00 0.00 45.36 4.85
736 768 4.074970 CCTGAAGATAAGTTTGTGCAGGT 58.925 43.478 0.00 0.00 37.48 4.00
738 770 3.253188 TGAAGATAAGTTTGTGCAGGTGC 59.747 43.478 0.00 0.00 42.50 5.01
779 814 4.618489 GGTGCAAAGATGACAAGAAAATCG 59.382 41.667 0.00 0.00 0.00 3.34
780 815 5.451908 GTGCAAAGATGACAAGAAAATCGA 58.548 37.500 0.00 0.00 0.00 3.59
781 816 5.566774 GTGCAAAGATGACAAGAAAATCGAG 59.433 40.000 0.00 0.00 0.00 4.04
782 817 5.469760 TGCAAAGATGACAAGAAAATCGAGA 59.530 36.000 0.00 0.00 0.00 4.04
783 818 6.017192 TGCAAAGATGACAAGAAAATCGAGAA 60.017 34.615 0.00 0.00 0.00 2.87
857 934 1.331138 GTCGACCGAGTCATAGTCAGG 59.669 57.143 3.51 0.00 32.09 3.86
858 935 1.208776 TCGACCGAGTCATAGTCAGGA 59.791 52.381 5.15 0.00 32.09 3.86
859 936 1.331138 CGACCGAGTCATAGTCAGGAC 59.669 57.143 5.15 0.00 35.69 3.85
861 938 0.663688 CCGAGTCATAGTCAGGACGG 59.336 60.000 0.00 0.00 40.40 4.79
862 939 1.664873 CGAGTCATAGTCAGGACGGA 58.335 55.000 0.00 0.00 40.40 4.69
902 979 2.639286 GTGAACCAGCTTGCCGTG 59.361 61.111 0.00 0.00 0.00 4.94
903 980 2.186826 GTGAACCAGCTTGCCGTGT 61.187 57.895 0.00 0.00 0.00 4.49
916 993 0.530288 GCCGTGTGCATTATTTGGGT 59.470 50.000 0.00 0.00 40.77 4.51
917 994 1.735369 GCCGTGTGCATTATTTGGGTG 60.735 52.381 0.00 0.00 40.77 4.61
918 995 1.627879 CGTGTGCATTATTTGGGTGC 58.372 50.000 0.00 0.00 39.26 5.01
919 996 1.067985 CGTGTGCATTATTTGGGTGCA 60.068 47.619 0.00 0.00 45.69 4.57
979 1056 1.660264 GGCGCAACAAACCTTTCCG 60.660 57.895 10.83 0.00 0.00 4.30
985 1062 3.113322 GCAACAAACCTTTCCGTTTCTC 58.887 45.455 0.00 0.00 33.69 2.87
996 1078 8.857694 ACCTTTCCGTTTCTCTTTCAATAATA 57.142 30.769 0.00 0.00 0.00 0.98
1363 1455 3.763360 CCCTTTCTTGGTTGCATGTATGA 59.237 43.478 0.00 0.00 0.00 2.15
1421 1524 0.595053 CTATGTAGCTGACCGCGGTG 60.595 60.000 39.65 24.18 45.59 4.94
1451 1562 3.445450 TCACTACTGAATCTGTCTCTGCC 59.555 47.826 0.00 0.00 0.00 4.85
1465 1577 0.662619 TCTGCCTGCGTGTTCTTTTG 59.337 50.000 0.00 0.00 0.00 2.44
1554 1666 7.308229 GCACCTGATTATCATGTTGTCCTATTC 60.308 40.741 0.44 0.00 0.00 1.75
1621 1733 4.832266 ACTAGATCTCCGATCTGATTGCTT 59.168 41.667 14.81 0.00 0.00 3.91
1738 1850 4.179298 CACCTATGCATAGATCGTCCATG 58.821 47.826 31.14 15.29 32.05 3.66
1825 1940 1.519719 GAGCGAGCCTGAGTGGAAT 59.480 57.895 0.00 0.00 38.35 3.01
1844 1959 1.338107 TGAGACCTTCTTCTTCGCCA 58.662 50.000 0.00 0.00 0.00 5.69
1935 2050 1.406069 CGGAGAAGCATGGCAAGTACT 60.406 52.381 0.00 0.00 0.00 2.73
1938 2053 3.198872 GAGAAGCATGGCAAGTACTACC 58.801 50.000 7.74 7.74 0.00 3.18
1939 2054 2.571653 AGAAGCATGGCAAGTACTACCA 59.428 45.455 17.40 17.40 37.99 3.25
1940 2055 3.200825 AGAAGCATGGCAAGTACTACCAT 59.799 43.478 19.82 19.82 45.08 3.55
1972 2087 2.359531 CTCCTGTACTCTCGGATCCAAC 59.640 54.545 13.41 0.29 0.00 3.77
2020 2135 0.588252 CAGAACACCCGTTTCAGCTG 59.412 55.000 7.63 7.63 34.75 4.24
2021 2136 1.166531 AGAACACCCGTTTCAGCTGC 61.167 55.000 9.47 0.00 34.75 5.25
2022 2137 1.152963 AACACCCGTTTCAGCTGCT 60.153 52.632 9.47 0.00 28.09 4.24
2023 2138 1.447317 AACACCCGTTTCAGCTGCTG 61.447 55.000 23.31 23.31 28.09 4.41
2024 2139 2.980233 ACCCGTTTCAGCTGCTGC 60.980 61.111 24.38 7.62 40.05 5.25
2025 2140 3.741476 CCCGTTTCAGCTGCTGCC 61.741 66.667 24.38 13.16 40.80 4.85
2026 2141 2.670934 CCGTTTCAGCTGCTGCCT 60.671 61.111 24.38 0.00 40.80 4.75
2087 2202 2.347490 GAGGCGGTGCTTCAGGAA 59.653 61.111 0.00 0.00 34.72 3.36
2191 2306 3.050619 CGGCAGAGGTAATCGAACATAC 58.949 50.000 0.00 0.00 0.00 2.39
2192 2307 3.243434 CGGCAGAGGTAATCGAACATACT 60.243 47.826 0.00 0.00 0.00 2.12
2372 2503 7.716998 TCTGTCATAATGGATAGAAAGGCTTTC 59.283 37.037 28.32 28.32 39.96 2.62
2389 2520 4.433615 GCTTTCGATCTCCTTGATGTGTA 58.566 43.478 0.00 0.00 35.14 2.90
2519 2681 9.715123 TCAACAATACTTACGCAATTCATAATG 57.285 29.630 0.00 0.00 0.00 1.90
2520 2682 8.957028 CAACAATACTTACGCAATTCATAATGG 58.043 33.333 0.00 0.00 0.00 3.16
2521 2683 8.445275 ACAATACTTACGCAATTCATAATGGA 57.555 30.769 0.00 0.00 0.00 3.41
2522 2684 9.066892 ACAATACTTACGCAATTCATAATGGAT 57.933 29.630 0.00 0.00 0.00 3.41
2526 2688 8.902540 ACTTACGCAATTCATAATGGATAGAA 57.097 30.769 0.00 0.00 0.00 2.10
2527 2689 9.337396 ACTTACGCAATTCATAATGGATAGAAA 57.663 29.630 0.00 0.00 0.00 2.52
2528 2690 9.817365 CTTACGCAATTCATAATGGATAGAAAG 57.183 33.333 0.00 0.00 0.00 2.62
2529 2691 7.206981 ACGCAATTCATAATGGATAGAAAGG 57.793 36.000 0.00 0.00 0.00 3.11
2530 2692 6.088824 CGCAATTCATAATGGATAGAAAGGC 58.911 40.000 0.00 0.00 0.00 4.35
2531 2693 6.072286 CGCAATTCATAATGGATAGAAAGGCT 60.072 38.462 0.00 0.00 0.00 4.58
2532 2694 7.522725 CGCAATTCATAATGGATAGAAAGGCTT 60.523 37.037 0.00 0.00 0.00 4.35
2533 2695 7.811713 GCAATTCATAATGGATAGAAAGGCTTC 59.188 37.037 0.00 0.00 0.00 3.86
2730 2906 5.805728 AGTCCACACCCAGAAAGTAATAAG 58.194 41.667 0.00 0.00 0.00 1.73
2760 2936 5.397447 GGGGGAATTTAATGGAAATGGGTTC 60.397 44.000 0.00 0.00 37.82 3.62
2817 2993 2.892425 GGAGTCTCGGGCGCATTG 60.892 66.667 10.83 0.00 0.00 2.82
2838 3014 3.161450 GCATCCTAGTCCCCGCCA 61.161 66.667 0.00 0.00 0.00 5.69
2861 3037 1.402896 TAATCCCTGGCTGCTCCTCG 61.403 60.000 0.00 0.00 35.26 4.63
3090 3492 8.015185 TCTAAAAGGCTAAATATACGGACACT 57.985 34.615 0.00 0.00 0.00 3.55
3111 4047 9.447040 GACACTGTTACTCTAAACCAATTTTTC 57.553 33.333 0.00 0.00 0.00 2.29
3141 4077 7.614494 AGCATGGCAGTTTATTCTTTAAACAT 58.386 30.769 10.00 0.00 39.24 2.71
3292 4249 4.991776 TGTTTCACACATAGGAATTCCCA 58.008 39.130 21.22 8.16 37.41 4.37
3330 4287 1.068434 GTCCTCCTATGCTGCACTCTC 59.932 57.143 3.57 0.00 0.00 3.20
3331 4288 1.063341 TCCTCCTATGCTGCACTCTCT 60.063 52.381 3.57 0.00 0.00 3.10
3352 4309 0.109272 TACTTGGAGAAGACGCAGCG 60.109 55.000 14.82 14.82 32.98 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.712998 TCATTTGTTCAATTAAACCTCGGAGA 59.287 34.615 6.58 0.00 0.00 3.71
7 8 6.801862 GTCATTTGTTCAATTAAACCTCGGAG 59.198 38.462 0.00 0.00 0.00 4.63
8 9 6.263392 TGTCATTTGTTCAATTAAACCTCGGA 59.737 34.615 0.00 0.00 0.00 4.55
9 10 6.442952 TGTCATTTGTTCAATTAAACCTCGG 58.557 36.000 0.00 0.00 0.00 4.63
10 11 7.860373 TCTTGTCATTTGTTCAATTAAACCTCG 59.140 33.333 0.00 0.00 0.00 4.63
11 12 9.528018 TTCTTGTCATTTGTTCAATTAAACCTC 57.472 29.630 0.00 0.00 0.00 3.85
12 13 9.883142 TTTCTTGTCATTTGTTCAATTAAACCT 57.117 25.926 0.00 0.00 0.00 3.50
17 18 9.528018 GGAACTTTCTTGTCATTTGTTCAATTA 57.472 29.630 0.00 0.00 35.45 1.40
18 19 7.495606 GGGAACTTTCTTGTCATTTGTTCAATT 59.504 33.333 0.00 0.00 35.45 2.32
19 20 6.986231 GGGAACTTTCTTGTCATTTGTTCAAT 59.014 34.615 0.00 0.00 35.45 2.57
20 21 6.337356 GGGAACTTTCTTGTCATTTGTTCAA 58.663 36.000 0.00 0.00 35.45 2.69
21 22 5.449862 CGGGAACTTTCTTGTCATTTGTTCA 60.450 40.000 0.00 0.00 35.45 3.18
22 23 4.976116 CGGGAACTTTCTTGTCATTTGTTC 59.024 41.667 0.00 0.00 33.70 3.18
23 24 4.642885 TCGGGAACTTTCTTGTCATTTGTT 59.357 37.500 0.00 0.00 0.00 2.83
24 25 4.204012 TCGGGAACTTTCTTGTCATTTGT 58.796 39.130 0.00 0.00 0.00 2.83
25 26 4.829064 TCGGGAACTTTCTTGTCATTTG 57.171 40.909 0.00 0.00 0.00 2.32
26 27 5.845391 TTTCGGGAACTTTCTTGTCATTT 57.155 34.783 0.00 0.00 0.00 2.32
27 28 5.845391 TTTTCGGGAACTTTCTTGTCATT 57.155 34.783 0.00 0.00 0.00 2.57
28 29 5.736207 GCTTTTTCGGGAACTTTCTTGTCAT 60.736 40.000 0.00 0.00 0.00 3.06
29 30 4.439563 GCTTTTTCGGGAACTTTCTTGTCA 60.440 41.667 0.00 0.00 0.00 3.58
30 31 4.042398 GCTTTTTCGGGAACTTTCTTGTC 58.958 43.478 0.00 0.00 0.00 3.18
31 32 3.488553 CGCTTTTTCGGGAACTTTCTTGT 60.489 43.478 0.00 0.00 0.00 3.16
32 33 3.042887 CGCTTTTTCGGGAACTTTCTTG 58.957 45.455 0.00 0.00 0.00 3.02
33 34 2.034179 CCGCTTTTTCGGGAACTTTCTT 59.966 45.455 0.00 0.00 45.38 2.52
34 35 1.607148 CCGCTTTTTCGGGAACTTTCT 59.393 47.619 0.00 0.00 45.38 2.52
35 36 2.046283 CCGCTTTTTCGGGAACTTTC 57.954 50.000 0.00 0.00 45.38 2.62
44 45 0.370273 CGATCTCCACCGCTTTTTCG 59.630 55.000 0.00 0.00 0.00 3.46
45 46 1.393883 GTCGATCTCCACCGCTTTTTC 59.606 52.381 0.00 0.00 0.00 2.29
46 47 1.002087 AGTCGATCTCCACCGCTTTTT 59.998 47.619 0.00 0.00 0.00 1.94
47 48 0.608640 AGTCGATCTCCACCGCTTTT 59.391 50.000 0.00 0.00 0.00 2.27
48 49 0.608640 AAGTCGATCTCCACCGCTTT 59.391 50.000 0.00 0.00 0.00 3.51
49 50 0.108615 CAAGTCGATCTCCACCGCTT 60.109 55.000 0.00 0.00 0.00 4.68
50 51 1.513158 CAAGTCGATCTCCACCGCT 59.487 57.895 0.00 0.00 0.00 5.52
51 52 1.519455 CCAAGTCGATCTCCACCGC 60.519 63.158 0.00 0.00 0.00 5.68
52 53 1.519455 GCCAAGTCGATCTCCACCG 60.519 63.158 0.00 0.00 0.00 4.94
53 54 0.460987 CTGCCAAGTCGATCTCCACC 60.461 60.000 0.00 0.00 0.00 4.61
54 55 0.460987 CCTGCCAAGTCGATCTCCAC 60.461 60.000 0.00 0.00 0.00 4.02
55 56 1.617018 CCCTGCCAAGTCGATCTCCA 61.617 60.000 0.00 0.00 0.00 3.86
56 57 1.144936 CCCTGCCAAGTCGATCTCC 59.855 63.158 0.00 0.00 0.00 3.71
57 58 0.460987 CACCCTGCCAAGTCGATCTC 60.461 60.000 0.00 0.00 0.00 2.75
58 59 1.194781 ACACCCTGCCAAGTCGATCT 61.195 55.000 0.00 0.00 0.00 2.75
59 60 0.321653 AACACCCTGCCAAGTCGATC 60.322 55.000 0.00 0.00 0.00 3.69
60 61 0.981183 TAACACCCTGCCAAGTCGAT 59.019 50.000 0.00 0.00 0.00 3.59
61 62 0.981183 ATAACACCCTGCCAAGTCGA 59.019 50.000 0.00 0.00 0.00 4.20
62 63 2.550978 CTATAACACCCTGCCAAGTCG 58.449 52.381 0.00 0.00 0.00 4.18
63 64 2.289565 GCTATAACACCCTGCCAAGTC 58.710 52.381 0.00 0.00 0.00 3.01
64 65 1.633432 TGCTATAACACCCTGCCAAGT 59.367 47.619 0.00 0.00 0.00 3.16
65 66 2.418368 TGCTATAACACCCTGCCAAG 57.582 50.000 0.00 0.00 0.00 3.61
66 67 2.722094 CTTGCTATAACACCCTGCCAA 58.278 47.619 0.00 0.00 0.00 4.52
67 68 1.681780 GCTTGCTATAACACCCTGCCA 60.682 52.381 0.00 0.00 0.00 4.92
68 69 1.025041 GCTTGCTATAACACCCTGCC 58.975 55.000 0.00 0.00 0.00 4.85
69 70 1.750193 TGCTTGCTATAACACCCTGC 58.250 50.000 0.00 0.00 0.00 4.85
70 71 2.684881 CCTTGCTTGCTATAACACCCTG 59.315 50.000 0.00 0.00 0.00 4.45
71 72 2.308866 ACCTTGCTTGCTATAACACCCT 59.691 45.455 0.00 0.00 0.00 4.34
72 73 2.723273 ACCTTGCTTGCTATAACACCC 58.277 47.619 0.00 0.00 0.00 4.61
73 74 4.783764 AAACCTTGCTTGCTATAACACC 57.216 40.909 0.00 0.00 0.00 4.16
74 75 4.923281 CCAAAACCTTGCTTGCTATAACAC 59.077 41.667 0.00 0.00 0.00 3.32
75 76 4.586841 ACCAAAACCTTGCTTGCTATAACA 59.413 37.500 0.00 0.00 0.00 2.41
76 77 5.134202 ACCAAAACCTTGCTTGCTATAAC 57.866 39.130 0.00 0.00 0.00 1.89
77 78 5.799827 AACCAAAACCTTGCTTGCTATAA 57.200 34.783 0.00 0.00 0.00 0.98
78 79 5.184287 GGTAACCAAAACCTTGCTTGCTATA 59.816 40.000 0.00 0.00 33.97 1.31
79 80 4.021456 GGTAACCAAAACCTTGCTTGCTAT 60.021 41.667 0.00 0.00 33.97 2.97
80 81 3.319689 GGTAACCAAAACCTTGCTTGCTA 59.680 43.478 0.00 0.00 33.97 3.49
81 82 2.102420 GGTAACCAAAACCTTGCTTGCT 59.898 45.455 0.00 0.00 33.97 3.91
82 83 2.479837 GGTAACCAAAACCTTGCTTGC 58.520 47.619 0.00 0.00 33.97 4.01
83 84 2.359531 TCGGTAACCAAAACCTTGCTTG 59.640 45.455 0.00 0.00 34.66 4.01
84 85 2.657143 TCGGTAACCAAAACCTTGCTT 58.343 42.857 0.00 0.00 34.66 3.91
85 86 2.351706 TCGGTAACCAAAACCTTGCT 57.648 45.000 0.00 0.00 34.66 3.91
86 87 3.004944 TCATTCGGTAACCAAAACCTTGC 59.995 43.478 0.00 0.00 34.66 4.01
87 88 4.320935 CCTCATTCGGTAACCAAAACCTTG 60.321 45.833 0.00 0.00 34.66 3.61
88 89 3.824443 CCTCATTCGGTAACCAAAACCTT 59.176 43.478 0.00 0.00 34.66 3.50
89 90 3.418047 CCTCATTCGGTAACCAAAACCT 58.582 45.455 0.00 0.00 34.66 3.50
90 91 2.094906 GCCTCATTCGGTAACCAAAACC 60.095 50.000 0.00 0.00 0.00 3.27
91 92 2.554893 TGCCTCATTCGGTAACCAAAAC 59.445 45.455 0.00 0.00 0.00 2.43
92 93 2.865079 TGCCTCATTCGGTAACCAAAA 58.135 42.857 0.00 0.00 0.00 2.44
93 94 2.570415 TGCCTCATTCGGTAACCAAA 57.430 45.000 0.00 0.00 0.00 3.28
94 95 2.570415 TTGCCTCATTCGGTAACCAA 57.430 45.000 0.00 0.00 0.00 3.67
95 96 2.799126 ATTGCCTCATTCGGTAACCA 57.201 45.000 0.00 0.00 31.36 3.67
96 97 4.450082 AAAATTGCCTCATTCGGTAACC 57.550 40.909 0.00 0.00 31.36 2.85
97 98 5.337554 GGTAAAATTGCCTCATTCGGTAAC 58.662 41.667 0.00 0.00 31.36 2.50
98 99 4.399934 GGGTAAAATTGCCTCATTCGGTAA 59.600 41.667 0.28 0.00 33.03 2.85
99 100 3.949113 GGGTAAAATTGCCTCATTCGGTA 59.051 43.478 0.28 0.00 33.03 4.02
100 101 2.758423 GGGTAAAATTGCCTCATTCGGT 59.242 45.455 0.28 0.00 33.03 4.69
101 102 2.757868 TGGGTAAAATTGCCTCATTCGG 59.242 45.455 0.28 0.00 33.03 4.30
102 103 4.423732 CTTGGGTAAAATTGCCTCATTCG 58.576 43.478 0.28 0.00 33.03 3.34
103 104 4.383010 CCCTTGGGTAAAATTGCCTCATTC 60.383 45.833 0.00 0.00 33.03 2.67
104 105 3.519107 CCCTTGGGTAAAATTGCCTCATT 59.481 43.478 0.00 0.00 33.03 2.57
105 106 3.106827 CCCTTGGGTAAAATTGCCTCAT 58.893 45.455 0.00 0.00 33.03 2.90
106 107 2.534990 CCCTTGGGTAAAATTGCCTCA 58.465 47.619 0.00 0.00 33.03 3.86
107 108 1.831106 CCCCTTGGGTAAAATTGCCTC 59.169 52.381 4.84 0.00 38.25 4.70
108 109 1.951209 CCCCTTGGGTAAAATTGCCT 58.049 50.000 4.84 0.00 38.25 4.75
120 121 0.041090 ATGTTTACCAGCCCCCTTGG 59.959 55.000 0.00 0.00 41.60 3.61
121 122 1.185315 CATGTTTACCAGCCCCCTTG 58.815 55.000 0.00 0.00 0.00 3.61
122 123 0.041090 CCATGTTTACCAGCCCCCTT 59.959 55.000 0.00 0.00 0.00 3.95
123 124 1.146544 ACCATGTTTACCAGCCCCCT 61.147 55.000 0.00 0.00 0.00 4.79
124 125 0.252057 AACCATGTTTACCAGCCCCC 60.252 55.000 0.00 0.00 0.00 5.40
125 126 2.097036 GTAACCATGTTTACCAGCCCC 58.903 52.381 1.85 0.00 0.00 5.80
132 133 2.429478 AGCCGTGGTAACCATGTTTAC 58.571 47.619 4.65 4.65 38.76 2.01
133 134 2.863132 AGCCGTGGTAACCATGTTTA 57.137 45.000 0.00 0.00 38.76 2.01
134 135 2.429478 GTAGCCGTGGTAACCATGTTT 58.571 47.619 0.00 0.00 38.76 2.83
135 136 1.339342 GGTAGCCGTGGTAACCATGTT 60.339 52.381 0.00 0.00 38.76 2.71
136 137 0.251073 GGTAGCCGTGGTAACCATGT 59.749 55.000 0.00 0.00 38.76 3.21
137 138 0.250793 TGGTAGCCGTGGTAACCATG 59.749 55.000 9.56 0.00 40.02 3.66
138 139 0.985760 TTGGTAGCCGTGGTAACCAT 59.014 50.000 13.12 0.00 35.28 3.55
139 140 0.322322 CTTGGTAGCCGTGGTAACCA 59.678 55.000 9.56 9.56 0.00 3.67
140 141 0.392060 CCTTGGTAGCCGTGGTAACC 60.392 60.000 5.21 5.21 0.00 2.85
141 142 0.609662 TCCTTGGTAGCCGTGGTAAC 59.390 55.000 0.00 0.00 0.00 2.50
142 143 1.350071 TTCCTTGGTAGCCGTGGTAA 58.650 50.000 0.00 0.00 0.00 2.85
143 144 1.575419 ATTCCTTGGTAGCCGTGGTA 58.425 50.000 0.00 0.00 0.00 3.25
144 145 1.208776 GTATTCCTTGGTAGCCGTGGT 59.791 52.381 0.00 0.00 0.00 4.16
145 146 1.474498 GGTATTCCTTGGTAGCCGTGG 60.474 57.143 0.00 0.00 0.00 4.94
146 147 1.805120 CGGTATTCCTTGGTAGCCGTG 60.805 57.143 0.00 0.00 33.87 4.94
147 148 0.462789 CGGTATTCCTTGGTAGCCGT 59.537 55.000 0.00 0.00 33.87 5.68
148 149 0.748450 TCGGTATTCCTTGGTAGCCG 59.252 55.000 0.00 0.00 39.13 5.52
149 150 2.037144 TCTCGGTATTCCTTGGTAGCC 58.963 52.381 0.00 0.00 0.00 3.93
150 151 3.814005 TTCTCGGTATTCCTTGGTAGC 57.186 47.619 0.00 0.00 0.00 3.58
151 152 7.328737 CGAAATATTCTCGGTATTCCTTGGTAG 59.671 40.741 10.37 0.00 32.62 3.18
152 153 7.014518 TCGAAATATTCTCGGTATTCCTTGGTA 59.985 37.037 15.30 0.00 36.93 3.25
153 154 5.989777 CGAAATATTCTCGGTATTCCTTGGT 59.010 40.000 10.37 0.00 32.62 3.67
154 155 6.220930 TCGAAATATTCTCGGTATTCCTTGG 58.779 40.000 15.30 0.00 36.93 3.61
155 156 7.564988 GTTCGAAATATTCTCGGTATTCCTTG 58.435 38.462 0.00 0.00 36.93 3.61
156 157 6.420008 CGTTCGAAATATTCTCGGTATTCCTT 59.580 38.462 0.00 0.00 36.93 3.36
157 158 5.919141 CGTTCGAAATATTCTCGGTATTCCT 59.081 40.000 0.00 0.00 36.93 3.36
158 159 5.916883 TCGTTCGAAATATTCTCGGTATTCC 59.083 40.000 0.00 0.00 36.93 3.01
159 160 6.981379 TCGTTCGAAATATTCTCGGTATTC 57.019 37.500 0.00 0.00 36.93 1.75
160 161 7.941795 ATTCGTTCGAAATATTCTCGGTATT 57.058 32.000 11.50 0.00 36.93 1.89
161 162 7.941795 AATTCGTTCGAAATATTCTCGGTAT 57.058 32.000 11.50 0.00 36.93 2.73
162 163 7.760131 AAATTCGTTCGAAATATTCTCGGTA 57.240 32.000 11.50 6.19 36.93 4.02
163 164 6.657836 AAATTCGTTCGAAATATTCTCGGT 57.342 33.333 11.50 0.00 36.93 4.69
201 202 9.743057 TGTTCGTTCATTCACTTATTTGAATTT 57.257 25.926 0.00 0.00 42.45 1.82
202 203 9.912634 ATGTTCGTTCATTCACTTATTTGAATT 57.087 25.926 0.00 0.00 42.45 2.17
203 204 9.912634 AATGTTCGTTCATTCACTTATTTGAAT 57.087 25.926 0.00 0.00 45.32 2.57
222 223 6.399758 AGAGGTCTCTGGTTCGAATGTTCG 62.400 50.000 0.00 8.76 44.22 3.95
223 224 3.056465 AGAGGTCTCTGGTTCGAATGTTC 60.056 47.826 0.00 0.00 38.75 3.18
224 225 2.900546 AGAGGTCTCTGGTTCGAATGTT 59.099 45.455 0.00 0.00 38.75 2.71
225 226 2.494073 GAGAGGTCTCTGGTTCGAATGT 59.506 50.000 0.00 0.00 40.61 2.71
226 227 2.493675 TGAGAGGTCTCTGGTTCGAATG 59.506 50.000 0.00 0.00 43.25 2.67
227 228 2.808919 TGAGAGGTCTCTGGTTCGAAT 58.191 47.619 0.00 0.00 43.25 3.34
228 229 2.287977 TGAGAGGTCTCTGGTTCGAA 57.712 50.000 5.09 0.00 43.25 3.71
229 230 2.287977 TTGAGAGGTCTCTGGTTCGA 57.712 50.000 5.09 0.00 43.25 3.71
230 231 3.060602 GTTTTGAGAGGTCTCTGGTTCG 58.939 50.000 5.09 0.00 43.25 3.95
231 232 4.073293 TGTTTTGAGAGGTCTCTGGTTC 57.927 45.455 5.09 0.00 43.25 3.62
232 233 4.164221 TCTTGTTTTGAGAGGTCTCTGGTT 59.836 41.667 5.09 0.00 43.25 3.67
233 234 3.711704 TCTTGTTTTGAGAGGTCTCTGGT 59.288 43.478 5.09 0.00 43.25 4.00
234 235 4.342862 TCTTGTTTTGAGAGGTCTCTGG 57.657 45.455 5.09 0.00 43.25 3.86
235 236 5.363939 AGTTCTTGTTTTGAGAGGTCTCTG 58.636 41.667 5.09 0.00 43.25 3.35
236 237 5.622346 AGTTCTTGTTTTGAGAGGTCTCT 57.378 39.130 8.44 0.00 43.25 3.10
237 238 5.929415 CCTAGTTCTTGTTTTGAGAGGTCTC 59.071 44.000 0.00 0.00 43.15 3.36
238 239 5.367060 ACCTAGTTCTTGTTTTGAGAGGTCT 59.633 40.000 0.00 0.00 0.00 3.85
239 240 5.612351 ACCTAGTTCTTGTTTTGAGAGGTC 58.388 41.667 0.00 0.00 0.00 3.85
240 241 5.632034 ACCTAGTTCTTGTTTTGAGAGGT 57.368 39.130 0.00 0.00 0.00 3.85
241 242 6.768381 AGAAACCTAGTTCTTGTTTTGAGAGG 59.232 38.462 0.00 0.00 34.03 3.69
242 243 7.793927 AGAAACCTAGTTCTTGTTTTGAGAG 57.206 36.000 0.00 0.00 34.03 3.20
243 244 9.490379 GATAGAAACCTAGTTCTTGTTTTGAGA 57.510 33.333 1.31 0.00 38.75 3.27
244 245 9.273016 TGATAGAAACCTAGTTCTTGTTTTGAG 57.727 33.333 1.31 0.00 38.75 3.02
245 246 9.621629 TTGATAGAAACCTAGTTCTTGTTTTGA 57.378 29.630 1.31 0.00 38.75 2.69
246 247 9.665264 GTTGATAGAAACCTAGTTCTTGTTTTG 57.335 33.333 1.31 0.00 38.75 2.44
247 248 9.403583 TGTTGATAGAAACCTAGTTCTTGTTTT 57.596 29.630 1.31 0.00 38.75 2.43
248 249 8.837389 GTGTTGATAGAAACCTAGTTCTTGTTT 58.163 33.333 1.31 0.00 38.75 2.83
249 250 7.170998 CGTGTTGATAGAAACCTAGTTCTTGTT 59.829 37.037 1.31 0.00 38.75 2.83
250 251 6.645415 CGTGTTGATAGAAACCTAGTTCTTGT 59.355 38.462 1.31 0.00 38.75 3.16
251 252 6.645415 ACGTGTTGATAGAAACCTAGTTCTTG 59.355 38.462 1.31 0.00 38.75 3.02
252 253 6.756221 ACGTGTTGATAGAAACCTAGTTCTT 58.244 36.000 1.31 0.00 38.75 2.52
253 254 6.015688 TGACGTGTTGATAGAAACCTAGTTCT 60.016 38.462 0.00 1.65 40.89 3.01
254 255 6.154445 TGACGTGTTGATAGAAACCTAGTTC 58.846 40.000 0.00 0.00 0.00 3.01
255 256 6.015688 TCTGACGTGTTGATAGAAACCTAGTT 60.016 38.462 0.00 0.00 0.00 2.24
256 257 5.475909 TCTGACGTGTTGATAGAAACCTAGT 59.524 40.000 0.00 0.00 0.00 2.57
257 258 5.950883 TCTGACGTGTTGATAGAAACCTAG 58.049 41.667 0.00 0.00 0.00 3.02
258 259 5.970317 TCTGACGTGTTGATAGAAACCTA 57.030 39.130 0.00 0.00 0.00 3.08
259 260 4.866508 TCTGACGTGTTGATAGAAACCT 57.133 40.909 0.00 0.00 0.00 3.50
260 261 4.151867 GGTTCTGACGTGTTGATAGAAACC 59.848 45.833 0.00 0.00 30.78 3.27
261 262 4.748102 TGGTTCTGACGTGTTGATAGAAAC 59.252 41.667 0.00 0.00 36.03 2.78
262 263 4.951254 TGGTTCTGACGTGTTGATAGAAA 58.049 39.130 0.00 0.00 0.00 2.52
263 264 4.594123 TGGTTCTGACGTGTTGATAGAA 57.406 40.909 0.00 0.00 0.00 2.10
264 265 4.038763 AGTTGGTTCTGACGTGTTGATAGA 59.961 41.667 0.00 0.00 0.00 1.98
265 266 4.307432 AGTTGGTTCTGACGTGTTGATAG 58.693 43.478 0.00 0.00 0.00 2.08
266 267 4.038763 AGAGTTGGTTCTGACGTGTTGATA 59.961 41.667 0.00 0.00 0.00 2.15
267 268 3.131396 GAGTTGGTTCTGACGTGTTGAT 58.869 45.455 0.00 0.00 0.00 2.57
268 269 2.167693 AGAGTTGGTTCTGACGTGTTGA 59.832 45.455 0.00 0.00 0.00 3.18
269 270 2.540101 GAGAGTTGGTTCTGACGTGTTG 59.460 50.000 0.00 0.00 0.00 3.33
270 271 2.167693 TGAGAGTTGGTTCTGACGTGTT 59.832 45.455 0.00 0.00 0.00 3.32
271 272 1.754803 TGAGAGTTGGTTCTGACGTGT 59.245 47.619 0.00 0.00 0.00 4.49
272 273 2.509052 TGAGAGTTGGTTCTGACGTG 57.491 50.000 0.00 0.00 0.00 4.49
273 274 2.289072 CCATGAGAGTTGGTTCTGACGT 60.289 50.000 0.00 0.00 0.00 4.34
274 275 2.341257 CCATGAGAGTTGGTTCTGACG 58.659 52.381 0.00 0.00 0.00 4.35
275 276 2.079925 GCCATGAGAGTTGGTTCTGAC 58.920 52.381 0.00 0.00 36.57 3.51
276 277 1.699083 TGCCATGAGAGTTGGTTCTGA 59.301 47.619 0.00 0.00 36.57 3.27
277 278 2.189594 TGCCATGAGAGTTGGTTCTG 57.810 50.000 0.00 0.00 36.57 3.02
278 279 3.446442 AATGCCATGAGAGTTGGTTCT 57.554 42.857 0.00 0.00 36.57 3.01
279 280 5.841957 ATTAATGCCATGAGAGTTGGTTC 57.158 39.130 0.00 0.00 36.57 3.62
280 281 7.067494 GTCTAATTAATGCCATGAGAGTTGGTT 59.933 37.037 0.00 0.00 36.57 3.67
281 282 6.543831 GTCTAATTAATGCCATGAGAGTTGGT 59.456 38.462 0.00 0.00 36.57 3.67
282 283 6.016777 GGTCTAATTAATGCCATGAGAGTTGG 60.017 42.308 0.00 0.00 37.31 3.77
283 284 6.016777 GGGTCTAATTAATGCCATGAGAGTTG 60.017 42.308 0.00 0.00 0.00 3.16
284 285 6.064717 GGGTCTAATTAATGCCATGAGAGTT 58.935 40.000 0.00 0.00 0.00 3.01
285 286 5.370880 AGGGTCTAATTAATGCCATGAGAGT 59.629 40.000 0.00 0.00 0.00 3.24
286 287 5.874093 AGGGTCTAATTAATGCCATGAGAG 58.126 41.667 0.00 0.00 0.00 3.20
287 288 5.912149 AGGGTCTAATTAATGCCATGAGA 57.088 39.130 0.00 0.00 0.00 3.27
288 289 5.639506 CGTAGGGTCTAATTAATGCCATGAG 59.360 44.000 0.00 0.00 0.00 2.90
289 290 5.071250 ACGTAGGGTCTAATTAATGCCATGA 59.929 40.000 0.00 0.00 0.00 3.07
290 291 5.305585 ACGTAGGGTCTAATTAATGCCATG 58.694 41.667 0.00 0.00 0.00 3.66
291 292 5.562298 ACGTAGGGTCTAATTAATGCCAT 57.438 39.130 0.00 0.00 0.00 4.40
292 293 5.599656 AGTACGTAGGGTCTAATTAATGCCA 59.400 40.000 0.00 0.00 0.00 4.92
293 294 6.094193 AGTACGTAGGGTCTAATTAATGCC 57.906 41.667 0.00 0.00 0.00 4.40
294 295 8.972349 GTAAAGTACGTAGGGTCTAATTAATGC 58.028 37.037 0.00 0.00 0.00 3.56
303 304 9.632638 TGATTTATAGTAAAGTACGTAGGGTCT 57.367 33.333 0.00 0.00 0.00 3.85
306 307 9.189723 GCTTGATTTATAGTAAAGTACGTAGGG 57.810 37.037 0.00 0.00 0.00 3.53
307 308 8.899776 CGCTTGATTTATAGTAAAGTACGTAGG 58.100 37.037 0.00 0.00 0.00 3.18
308 309 9.443283 ACGCTTGATTTATAGTAAAGTACGTAG 57.557 33.333 0.00 0.00 0.00 3.51
309 310 9.787532 AACGCTTGATTTATAGTAAAGTACGTA 57.212 29.630 0.00 0.00 0.00 3.57
310 311 8.693542 AACGCTTGATTTATAGTAAAGTACGT 57.306 30.769 0.00 0.00 0.00 3.57
311 312 9.962759 AAAACGCTTGATTTATAGTAAAGTACG 57.037 29.630 0.00 0.00 0.00 3.67
314 315 9.124807 GCAAAAACGCTTGATTTATAGTAAAGT 57.875 29.630 0.00 0.00 0.00 2.66
315 316 9.341899 AGCAAAAACGCTTGATTTATAGTAAAG 57.658 29.630 0.00 0.00 39.99 1.85
330 331 2.228822 CTCCATACCAAGCAAAAACGCT 59.771 45.455 0.00 0.00 46.67 5.07
331 332 2.227865 TCTCCATACCAAGCAAAAACGC 59.772 45.455 0.00 0.00 0.00 4.84
332 333 4.701956 ATCTCCATACCAAGCAAAAACG 57.298 40.909 0.00 0.00 0.00 3.60
333 334 6.811665 GGTAAATCTCCATACCAAGCAAAAAC 59.188 38.462 0.00 0.00 41.05 2.43
334 335 6.349777 CGGTAAATCTCCATACCAAGCAAAAA 60.350 38.462 3.19 0.00 41.37 1.94
335 336 5.124776 CGGTAAATCTCCATACCAAGCAAAA 59.875 40.000 3.19 0.00 41.37 2.44
336 337 4.638421 CGGTAAATCTCCATACCAAGCAAA 59.362 41.667 3.19 0.00 41.37 3.68
337 338 4.080807 TCGGTAAATCTCCATACCAAGCAA 60.081 41.667 3.19 0.00 41.37 3.91
338 339 3.452990 TCGGTAAATCTCCATACCAAGCA 59.547 43.478 3.19 0.00 41.37 3.91
339 340 4.058817 CTCGGTAAATCTCCATACCAAGC 58.941 47.826 3.19 0.00 41.37 4.01
340 341 4.503296 CCCTCGGTAAATCTCCATACCAAG 60.503 50.000 3.19 0.00 41.37 3.61
341 342 3.389983 CCCTCGGTAAATCTCCATACCAA 59.610 47.826 3.19 0.00 41.37 3.67
342 343 2.969950 CCCTCGGTAAATCTCCATACCA 59.030 50.000 3.19 0.00 41.37 3.25
343 344 2.302157 CCCCTCGGTAAATCTCCATACC 59.698 54.545 0.00 0.00 38.55 2.73
344 345 2.289506 GCCCCTCGGTAAATCTCCATAC 60.290 54.545 0.00 0.00 0.00 2.39
345 346 1.975680 GCCCCTCGGTAAATCTCCATA 59.024 52.381 0.00 0.00 0.00 2.74
346 347 0.765510 GCCCCTCGGTAAATCTCCAT 59.234 55.000 0.00 0.00 0.00 3.41
347 348 0.619255 TGCCCCTCGGTAAATCTCCA 60.619 55.000 0.00 0.00 0.00 3.86
348 349 0.179054 GTGCCCCTCGGTAAATCTCC 60.179 60.000 0.00 0.00 0.00 3.71
349 350 0.529992 CGTGCCCCTCGGTAAATCTC 60.530 60.000 0.00 0.00 0.00 2.75
350 351 1.520666 CGTGCCCCTCGGTAAATCT 59.479 57.895 0.00 0.00 0.00 2.40
351 352 1.523032 CCGTGCCCCTCGGTAAATC 60.523 63.158 0.00 0.00 42.62 2.17
352 353 1.555477 TTCCGTGCCCCTCGGTAAAT 61.555 55.000 4.36 0.00 46.86 1.40
353 354 1.766625 TTTCCGTGCCCCTCGGTAAA 61.767 55.000 4.36 2.21 46.86 2.01
354 355 1.555477 ATTTCCGTGCCCCTCGGTAA 61.555 55.000 4.36 1.98 46.86 2.85
355 356 0.687098 TATTTCCGTGCCCCTCGGTA 60.687 55.000 4.36 0.00 46.86 4.02
356 357 1.991167 TATTTCCGTGCCCCTCGGT 60.991 57.895 4.36 0.00 46.86 4.69
358 359 1.881252 CGTATTTCCGTGCCCCTCG 60.881 63.158 0.00 0.00 0.00 4.63
359 360 2.178235 GCGTATTTCCGTGCCCCTC 61.178 63.158 0.00 0.00 0.00 4.30
360 361 2.124860 GCGTATTTCCGTGCCCCT 60.125 61.111 0.00 0.00 0.00 4.79
361 362 3.569690 CGCGTATTTCCGTGCCCC 61.570 66.667 0.00 0.00 0.00 5.80
362 363 2.904470 TACCGCGTATTTCCGTGCCC 62.904 60.000 4.92 0.00 37.03 5.36
363 364 1.083242 TTACCGCGTATTTCCGTGCC 61.083 55.000 4.92 0.00 37.03 5.01
364 365 0.025384 GTTACCGCGTATTTCCGTGC 59.975 55.000 4.92 0.00 37.03 5.34
365 366 0.646895 GGTTACCGCGTATTTCCGTG 59.353 55.000 4.92 0.00 38.04 4.94
366 367 0.246086 TGGTTACCGCGTATTTCCGT 59.754 50.000 4.92 0.00 0.00 4.69
367 368 1.259507 CATGGTTACCGCGTATTTCCG 59.740 52.381 4.92 0.00 0.00 4.30
368 369 1.600485 CCATGGTTACCGCGTATTTCC 59.400 52.381 4.92 1.35 0.00 3.13
369 370 1.600485 CCCATGGTTACCGCGTATTTC 59.400 52.381 11.73 0.00 0.00 2.17
370 371 1.209990 TCCCATGGTTACCGCGTATTT 59.790 47.619 11.73 0.00 0.00 1.40
371 372 0.831966 TCCCATGGTTACCGCGTATT 59.168 50.000 11.73 0.00 0.00 1.89
372 373 0.831966 TTCCCATGGTTACCGCGTAT 59.168 50.000 11.73 0.00 0.00 3.06
373 374 0.612229 TTTCCCATGGTTACCGCGTA 59.388 50.000 11.73 0.00 0.00 4.42
374 375 0.034863 ATTTCCCATGGTTACCGCGT 60.035 50.000 11.73 0.00 0.00 6.01
375 376 0.661020 GATTTCCCATGGTTACCGCG 59.339 55.000 11.73 0.00 0.00 6.46
376 377 1.947456 GAGATTTCCCATGGTTACCGC 59.053 52.381 11.73 0.00 0.00 5.68
377 378 2.159014 TCGAGATTTCCCATGGTTACCG 60.159 50.000 11.73 5.01 0.00 4.02
378 379 3.553828 TCGAGATTTCCCATGGTTACC 57.446 47.619 11.73 0.00 0.00 2.85
379 380 6.451064 AATTTCGAGATTTCCCATGGTTAC 57.549 37.500 11.73 0.00 0.00 2.50
380 381 7.095695 GAAATTTCGAGATTTCCCATGGTTA 57.904 36.000 23.99 0.00 39.16 2.85
381 382 5.965922 GAAATTTCGAGATTTCCCATGGTT 58.034 37.500 23.99 0.00 39.16 3.67
382 383 5.582689 GAAATTTCGAGATTTCCCATGGT 57.417 39.130 23.99 0.00 39.16 3.55
397 398 4.486574 TTTGGTTACCGGTCGAAATTTC 57.513 40.909 12.40 8.20 0.00 2.17
398 399 4.499526 GGTTTTGGTTACCGGTCGAAATTT 60.500 41.667 12.40 0.00 0.00 1.82
399 400 3.004629 GGTTTTGGTTACCGGTCGAAATT 59.995 43.478 12.40 0.00 0.00 1.82
400 401 2.553602 GGTTTTGGTTACCGGTCGAAAT 59.446 45.455 12.40 0.00 0.00 2.17
401 402 1.946081 GGTTTTGGTTACCGGTCGAAA 59.054 47.619 12.40 6.74 0.00 3.46
402 403 1.140652 AGGTTTTGGTTACCGGTCGAA 59.859 47.619 12.40 0.00 40.69 3.71
403 404 0.758123 AGGTTTTGGTTACCGGTCGA 59.242 50.000 12.40 0.00 40.69 4.20
404 405 1.264826 CAAGGTTTTGGTTACCGGTCG 59.735 52.381 12.40 0.00 40.69 4.79
405 406 2.574450 TCAAGGTTTTGGTTACCGGTC 58.426 47.619 12.40 0.00 40.69 4.79
406 407 2.732844 TCAAGGTTTTGGTTACCGGT 57.267 45.000 13.98 13.98 40.69 5.28
407 408 3.128068 GCTATCAAGGTTTTGGTTACCGG 59.872 47.826 0.00 0.00 40.69 5.28
408 409 3.754323 TGCTATCAAGGTTTTGGTTACCG 59.246 43.478 0.00 0.00 40.69 4.02
409 410 5.709966 CTTGCTATCAAGGTTTTGGTTACC 58.290 41.667 0.00 0.00 44.53 2.85
431 432 1.376037 GTAGGAGCAAAGCACGGCT 60.376 57.895 0.00 0.00 44.48 5.52
452 453 2.526432 ACAACCGTGAGATACCAGTCT 58.474 47.619 0.00 0.00 0.00 3.24
458 466 4.062991 AGTGGAAAACAACCGTGAGATAC 58.937 43.478 0.00 0.00 0.00 2.24
472 480 7.415086 AGAATAGAGGAGTCTAGAGTGGAAAA 58.585 38.462 4.36 0.00 38.73 2.29
477 485 4.451096 GCGAGAATAGAGGAGTCTAGAGTG 59.549 50.000 4.36 0.00 38.73 3.51
520 529 3.052566 AGACCACATAGATGACCTCCTCA 60.053 47.826 0.00 0.00 0.00 3.86
525 534 6.042552 CCATTCTAAGACCACATAGATGACCT 59.957 42.308 0.00 0.00 0.00 3.85
527 536 5.698545 GCCATTCTAAGACCACATAGATGAC 59.301 44.000 0.00 0.00 0.00 3.06
530 551 5.894298 TGCCATTCTAAGACCACATAGAT 57.106 39.130 0.00 0.00 0.00 1.98
632 664 2.969821 TGGCTTGATTGGTTACAGGT 57.030 45.000 0.00 0.00 0.00 4.00
717 749 3.826466 GCACCTGCACAAACTTATCTTC 58.174 45.455 0.00 0.00 41.59 2.87
718 750 3.923017 GCACCTGCACAAACTTATCTT 57.077 42.857 0.00 0.00 41.59 2.40
733 765 2.035066 GCACAAACTCATCTTTGCACCT 59.965 45.455 0.00 0.00 34.93 4.00
735 767 3.047796 CTGCACAAACTCATCTTTGCAC 58.952 45.455 0.00 0.00 35.13 4.57
736 768 2.034939 CCTGCACAAACTCATCTTTGCA 59.965 45.455 0.00 0.00 37.63 4.08
738 770 3.635331 CACCTGCACAAACTCATCTTTG 58.365 45.455 0.00 0.00 37.20 2.77
739 771 2.035066 GCACCTGCACAAACTCATCTTT 59.965 45.455 0.00 0.00 41.59 2.52
740 772 1.610522 GCACCTGCACAAACTCATCTT 59.389 47.619 0.00 0.00 41.59 2.40
741 773 1.242076 GCACCTGCACAAACTCATCT 58.758 50.000 0.00 0.00 41.59 2.90
742 774 3.780925 GCACCTGCACAAACTCATC 57.219 52.632 0.00 0.00 41.59 2.92
779 814 8.200792 ACTCATCCTCATGTGTAGTTATTTCTC 58.799 37.037 0.00 0.00 35.42 2.87
780 815 8.083828 ACTCATCCTCATGTGTAGTTATTTCT 57.916 34.615 0.00 0.00 35.42 2.52
781 816 9.988815 ATACTCATCCTCATGTGTAGTTATTTC 57.011 33.333 0.00 0.00 40.57 2.17
782 817 9.770097 CATACTCATCCTCATGTGTAGTTATTT 57.230 33.333 0.00 0.00 40.57 1.40
783 818 8.928448 ACATACTCATCCTCATGTGTAGTTATT 58.072 33.333 0.00 0.00 40.57 1.40
786 853 6.798427 ACATACTCATCCTCATGTGTAGTT 57.202 37.500 0.00 0.00 40.57 2.24
857 934 6.414987 GCTTTTGCATTTGAATATACTCCGTC 59.585 38.462 0.00 0.00 46.58 4.79
858 935 6.265577 GCTTTTGCATTTGAATATACTCCGT 58.734 36.000 0.00 0.00 46.58 4.69
859 936 6.738352 GCTTTTGCATTTGAATATACTCCG 57.262 37.500 0.00 0.00 46.58 4.63
916 993 2.352821 GGCCAGGAACATGCATGCA 61.353 57.895 26.53 25.04 0.00 3.96
917 994 2.292794 CTGGCCAGGAACATGCATGC 62.293 60.000 26.14 11.82 0.00 4.06
918 995 1.813859 CTGGCCAGGAACATGCATG 59.186 57.895 26.14 25.09 0.00 4.06
919 996 4.349682 CTGGCCAGGAACATGCAT 57.650 55.556 26.14 0.00 0.00 3.96
979 1056 8.943002 TCTTCCGGTTATTATTGAAAGAGAAAC 58.057 33.333 0.00 0.00 0.00 2.78
985 1062 6.458342 GCCAGTCTTCCGGTTATTATTGAAAG 60.458 42.308 0.00 0.00 0.00 2.62
996 1078 1.831652 CTCTGGCCAGTCTTCCGGTT 61.832 60.000 31.58 0.00 0.00 4.44
1319 1402 4.464244 GGATGAAGGTCCGATGATGATCTA 59.536 45.833 0.00 0.00 0.00 1.98
1363 1455 1.498264 ACAGGAGCAGCAGAGATCAT 58.502 50.000 0.00 0.00 0.00 2.45
1451 1562 2.363220 GACGAACAAAAGAACACGCAG 58.637 47.619 0.00 0.00 0.00 5.18
1554 1666 7.216317 CGCTGACGAACTAAAAATTAATTCCTG 59.784 37.037 0.10 0.00 43.93 3.86
1565 1677 1.790623 GCAGACGCTGACGAACTAAAA 59.209 47.619 10.46 0.00 43.93 1.52
1738 1850 5.591099 GAGAGGAGATGACAGTGATTTCTC 58.409 45.833 0.00 4.89 33.63 2.87
1825 1940 1.338107 TGGCGAAGAAGAAGGTCTCA 58.662 50.000 0.00 0.00 0.00 3.27
1935 2050 3.649023 ACAGGAGGTGTGTTTGTATGGTA 59.351 43.478 0.00 0.00 38.28 3.25
1938 2053 4.894784 AGTACAGGAGGTGTGTTTGTATG 58.105 43.478 0.00 0.00 40.69 2.39
1939 2054 4.838986 AGAGTACAGGAGGTGTGTTTGTAT 59.161 41.667 0.00 0.00 40.69 2.29
1940 2055 4.220724 AGAGTACAGGAGGTGTGTTTGTA 58.779 43.478 0.00 0.00 40.69 2.41
1972 2087 3.890756 TGCAGGAATAATAATGTGCCAGG 59.109 43.478 0.00 0.00 0.00 4.45
2020 2135 1.601759 TTCAGAACCAGCAGGCAGC 60.602 57.895 0.00 0.00 46.19 5.25
2021 2136 0.250640 AGTTCAGAACCAGCAGGCAG 60.251 55.000 9.85 0.00 39.06 4.85
2022 2137 0.183492 AAGTTCAGAACCAGCAGGCA 59.817 50.000 9.85 0.00 39.06 4.75
2023 2138 1.322442 AAAGTTCAGAACCAGCAGGC 58.678 50.000 9.85 0.00 39.06 4.85
2024 2139 4.023707 CAGTTAAAGTTCAGAACCAGCAGG 60.024 45.833 9.85 0.00 42.21 4.85
2025 2140 4.816385 TCAGTTAAAGTTCAGAACCAGCAG 59.184 41.667 9.85 0.00 0.00 4.24
2026 2141 4.776349 TCAGTTAAAGTTCAGAACCAGCA 58.224 39.130 9.85 0.00 0.00 4.41
2141 2256 1.028130 TGAGCGCGATCTTGATCTCT 58.972 50.000 26.10 0.00 0.00 3.10
2191 2306 2.094675 CCAAGGGCAAACATGTAGGAG 58.905 52.381 0.00 0.00 0.00 3.69
2192 2307 2.214376 CCAAGGGCAAACATGTAGGA 57.786 50.000 0.00 0.00 0.00 2.94
2372 2503 4.936891 TGTCATACACATCAAGGAGATCG 58.063 43.478 0.00 0.00 33.72 3.69
2389 2520 1.911357 TCTGAATGCCCTGTCTGTCAT 59.089 47.619 0.00 0.00 0.00 3.06
2516 2678 4.349342 AGATCGGAAGCCTTTCTATCCATT 59.651 41.667 0.00 0.00 33.68 3.16
2517 2679 3.906846 AGATCGGAAGCCTTTCTATCCAT 59.093 43.478 0.00 0.00 33.68 3.41
2518 2680 3.309296 AGATCGGAAGCCTTTCTATCCA 58.691 45.455 0.00 0.00 33.68 3.41
2519 2681 3.306433 GGAGATCGGAAGCCTTTCTATCC 60.306 52.174 0.00 0.00 33.68 2.59
2520 2682 3.576550 AGGAGATCGGAAGCCTTTCTATC 59.423 47.826 0.00 0.00 33.68 2.08
2521 2683 3.582164 AGGAGATCGGAAGCCTTTCTAT 58.418 45.455 0.00 0.00 33.68 1.98
2522 2684 3.033659 AGGAGATCGGAAGCCTTTCTA 57.966 47.619 0.00 0.00 33.68 2.10
2523 2685 1.872773 AGGAGATCGGAAGCCTTTCT 58.127 50.000 0.00 0.00 33.68 2.52
2524 2686 2.093447 TCAAGGAGATCGGAAGCCTTTC 60.093 50.000 6.65 0.00 38.63 2.62
2525 2687 1.909302 TCAAGGAGATCGGAAGCCTTT 59.091 47.619 6.65 0.00 38.63 3.11
2526 2688 1.573108 TCAAGGAGATCGGAAGCCTT 58.427 50.000 0.00 0.00 41.22 4.35
2527 2689 1.415659 CATCAAGGAGATCGGAAGCCT 59.584 52.381 0.00 0.00 33.72 4.58
2528 2690 1.139853 ACATCAAGGAGATCGGAAGCC 59.860 52.381 0.00 0.00 33.72 4.35
2529 2691 2.208431 CACATCAAGGAGATCGGAAGC 58.792 52.381 0.00 0.00 33.72 3.86
2530 2692 3.533606 ACACATCAAGGAGATCGGAAG 57.466 47.619 0.00 0.00 33.72 3.46
2531 2693 5.614324 AATACACATCAAGGAGATCGGAA 57.386 39.130 0.00 0.00 33.72 4.30
2532 2694 5.596772 TGTAATACACATCAAGGAGATCGGA 59.403 40.000 0.00 0.00 33.72 4.55
2533 2695 5.842907 TGTAATACACATCAAGGAGATCGG 58.157 41.667 0.00 0.00 33.72 4.18
2715 2891 5.656859 CCCCTTTTCCTTATTACTTTCTGGG 59.343 44.000 0.00 0.00 0.00 4.45
2730 2906 6.381498 TTTCCATTAAATTCCCCCTTTTCC 57.619 37.500 0.00 0.00 0.00 3.13
2748 2924 3.059386 GCGCCGAACCCATTTCCA 61.059 61.111 0.00 0.00 0.00 3.53
2760 2936 1.436983 GGTTTCCTCCTAATGCGCCG 61.437 60.000 4.18 0.00 0.00 6.46
2817 2993 2.210711 CGGGGACTAGGATGCTCCC 61.211 68.421 6.80 6.80 42.88 4.30
2838 3014 1.972660 GAGCAGCCAGGGATTACGGT 61.973 60.000 0.00 0.00 0.00 4.83
2842 3018 1.402896 CGAGGAGCAGCCAGGGATTA 61.403 60.000 0.00 0.00 40.02 1.75
2943 3345 0.798771 CTCGAAGCCGTGCACTACTC 60.799 60.000 16.19 5.24 37.05 2.59
2947 3349 4.379243 CCCTCGAAGCCGTGCACT 62.379 66.667 16.19 0.00 37.05 4.40
3111 4047 6.690194 AAGAATAAACTGCCATGCTTCTAG 57.310 37.500 0.00 0.00 0.00 2.43
3141 4077 9.431887 ACTAAATCTAGAACAACGCTTTCATTA 57.568 29.630 0.00 0.00 0.00 1.90
3202 4138 4.650734 TGGTGTGAAGATGCACTAATGAA 58.349 39.130 0.00 0.00 39.49 2.57
3213 4149 4.734398 TTTGCAACTTTGGTGTGAAGAT 57.266 36.364 0.00 0.00 0.00 2.40
3271 4228 5.336451 GGTTGGGAATTCCTATGTGTGAAAC 60.336 44.000 23.63 10.04 36.20 2.78
3311 4268 1.063341 AGAGAGTGCAGCATAGGAGGA 60.063 52.381 0.00 0.00 0.00 3.71
3320 4277 1.273606 TCCAAGTACAGAGAGTGCAGC 59.726 52.381 0.00 0.00 35.00 5.25
3330 4287 2.600731 CTGCGTCTTCTCCAAGTACAG 58.399 52.381 0.00 0.00 0.00 2.74
3331 4288 1.336887 GCTGCGTCTTCTCCAAGTACA 60.337 52.381 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.