Multiple sequence alignment - TraesCS2D01G600800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G600800 chr2D 100.000 5878 0 0 1 5878 651411474 651417351 0.000000e+00 10855.0
1 TraesCS2D01G600800 chr2D 98.246 114 2 0 2713 2826 529636499 529636386 3.590000e-47 200.0
2 TraesCS2D01G600800 chr2D 98.230 113 2 0 2717 2829 111321516 111321404 1.290000e-46 198.0
3 TraesCS2D01G600800 chr2D 95.868 121 3 2 2720 2839 176518118 176517999 1.670000e-45 195.0
4 TraesCS2D01G600800 chr2D 97.391 115 2 1 2720 2833 617397751 617397865 1.670000e-45 195.0
5 TraesCS2D01G600800 chr2A 88.758 3149 186 66 2825 5878 776221494 776218419 0.000000e+00 3699.0
6 TraesCS2D01G600800 chr2A 92.295 2362 135 27 382 2721 776223829 776221493 0.000000e+00 3310.0
7 TraesCS2D01G600800 chr2A 89.591 269 18 5 1 269 776224192 776223934 3.390000e-87 333.0
8 TraesCS2D01G600800 chr2A 95.082 122 4 2 2711 2832 758757252 758757133 2.160000e-44 191.0
9 TraesCS2D01G600800 chr1B 93.245 2265 116 16 469 2704 559574959 559577215 0.000000e+00 3301.0
10 TraesCS2D01G600800 chr1B 91.145 2157 126 30 2825 4967 559577227 559579332 0.000000e+00 2865.0
11 TraesCS2D01G600800 chr1B 94.989 439 21 1 1 439 559574523 559574960 0.000000e+00 688.0
12 TraesCS2D01G600800 chr1B 98.058 103 2 0 4996 5098 559579328 559579430 4.680000e-41 180.0
13 TraesCS2D01G600800 chr1B 98.077 52 1 0 5827 5878 559585617 559585668 2.260000e-14 91.6
14 TraesCS2D01G600800 chr2B 89.329 1668 91 32 3545 5168 780821014 780822638 0.000000e+00 2013.0
15 TraesCS2D01G600800 chr2B 94.136 1279 49 13 729 2000 780818088 780819347 0.000000e+00 1923.0
16 TraesCS2D01G600800 chr2B 93.234 739 37 6 2825 3562 780820103 780820829 0.000000e+00 1075.0
17 TraesCS2D01G600800 chr2B 90.921 749 43 13 1982 2721 780819372 780820104 0.000000e+00 983.0
18 TraesCS2D01G600800 chr1D 85.488 379 22 15 4105 4473 493954689 493954334 1.200000e-96 364.0
19 TraesCS2D01G600800 chr1D 98.246 114 2 0 2715 2828 414643353 414643240 3.590000e-47 200.0
20 TraesCS2D01G600800 chr3B 86.235 247 18 7 3640 3877 360429163 360428924 2.720000e-63 254.0
21 TraesCS2D01G600800 chr7B 99.091 110 1 0 2718 2827 730205112 730205221 1.290000e-46 198.0
22 TraesCS2D01G600800 chr6A 92.481 133 7 3 2715 2846 70424070 70423940 2.800000e-43 187.0
23 TraesCS2D01G600800 chr3D 93.130 131 4 5 2720 2848 552761381 552761254 2.800000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G600800 chr2D 651411474 651417351 5877 False 10855.000000 10855 100.000000 1 5878 1 chr2D.!!$F2 5877
1 TraesCS2D01G600800 chr2A 776218419 776224192 5773 True 2447.333333 3699 90.214667 1 5878 3 chr2A.!!$R2 5877
2 TraesCS2D01G600800 chr1B 559574523 559579430 4907 False 1758.500000 3301 94.359250 1 5098 4 chr1B.!!$F2 5097
3 TraesCS2D01G600800 chr2B 780818088 780822638 4550 False 1498.500000 2013 91.905000 729 5168 4 chr2B.!!$F1 4439

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 494 0.786581 CGTGAGCTATAATGCTGCGG 59.213 55.0 0.0 0.00 44.17 5.69 F
1608 1669 0.963962 AGGAGCTTGTTTCGTACCGA 59.036 50.0 0.0 0.00 0.00 4.69 F
2730 2862 0.331954 TTCTCTGCTACTCCCTCCGT 59.668 55.0 0.0 0.00 0.00 4.69 F
3565 3722 0.517316 GTGGTGATCACTGAAACGCC 59.483 55.0 24.5 6.78 42.86 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 2498 0.606401 CAGCTCAACAACGGGACCAT 60.606 55.0 0.00 0.00 0.00 3.55 R
2808 2940 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.30 R
3919 4288 0.401356 TGAATTGGCAGAGCACCTGA 59.599 50.0 9.90 0.00 45.78 3.86 R
5059 5467 0.806868 AAGTTGATCTGCATGCGTGG 59.193 50.0 14.09 6.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.635268 CTCTTCCACTGCCCCCTGC 62.635 68.421 0.00 0.00 41.77 4.85
189 190 2.894387 GCGAGCTCCAGCATCCAC 60.894 66.667 8.47 0.00 45.16 4.02
230 232 1.134401 CACCGGTCTAGCCATTCACAT 60.134 52.381 2.59 0.00 36.97 3.21
312 314 2.223537 TACATGCTACAGCGGTGATG 57.776 50.000 23.44 16.26 45.83 3.07
337 339 4.320608 ACCTTTGTATGCCAAACTGTTG 57.679 40.909 0.00 0.00 38.12 3.33
371 395 5.939296 TGTCATTGAACTGATGCAATACAGA 59.061 36.000 20.23 4.09 37.54 3.41
440 492 1.151668 CCCGTGAGCTATAATGCTGC 58.848 55.000 0.00 0.00 44.17 5.25
442 494 0.786581 CGTGAGCTATAATGCTGCGG 59.213 55.000 0.00 0.00 44.17 5.69
456 508 1.372087 CTGCGGGACTTGATTGAGCC 61.372 60.000 0.00 0.00 0.00 4.70
468 523 7.702348 GGACTTGATTGAGCCATTTGTTATTAC 59.298 37.037 0.00 0.00 0.00 1.89
525 580 4.853196 CAGAATATTTTTGTGGAGTGTGCG 59.147 41.667 0.00 0.00 0.00 5.34
551 606 3.052944 CCTCCATTTTATTCCTGGGTCCA 60.053 47.826 0.00 0.00 0.00 4.02
666 721 3.386768 TCTAGCTGCTGAAACTTCGTT 57.613 42.857 13.43 0.00 0.00 3.85
678 733 4.924462 TGAAACTTCGTTGTTTGTTTTCCC 59.076 37.500 11.76 0.00 39.86 3.97
715 770 4.902448 TGGTAAGCCCCACTTTACAATTTT 59.098 37.500 0.00 0.00 39.97 1.82
891 952 5.989249 TGAGCAATTTATCAAATCGATCCG 58.011 37.500 0.00 0.00 35.39 4.18
895 956 8.099364 AGCAATTTATCAAATCGATCCGTTAT 57.901 30.769 0.00 0.00 35.39 1.89
896 957 8.230486 AGCAATTTATCAAATCGATCCGTTATC 58.770 33.333 0.00 0.00 35.39 1.75
922 983 6.405842 GGTTCTTTATATGCAGGACCCTTTTG 60.406 42.308 0.00 0.00 0.00 2.44
937 998 6.661805 GGACCCTTTTGAATTCAAGTATACCA 59.338 38.462 19.64 1.87 37.15 3.25
961 1022 1.132500 GGGTCTCAGTTGGATAGGGG 58.868 60.000 0.00 0.00 0.00 4.79
1050 1111 1.075536 GACAATGGGGGTGGTCTTCTT 59.924 52.381 0.00 0.00 0.00 2.52
1230 1291 2.093869 TGACCGTGGCTACCTTATCAAC 60.094 50.000 0.00 0.00 0.00 3.18
1608 1669 0.963962 AGGAGCTTGTTTCGTACCGA 59.036 50.000 0.00 0.00 0.00 4.69
1647 1708 3.662078 TGAGACCCTCCTCATTGATGAT 58.338 45.455 0.00 0.00 38.18 2.45
1802 1868 5.653769 AGTGTGGACCAATTTCAGGATAATG 59.346 40.000 0.00 0.00 0.00 1.90
1850 1917 3.554960 GGAAAGACCAACCAGGAATTTGC 60.555 47.826 0.00 0.00 41.22 3.68
1993 2063 1.956477 TCTTGCTGAAAACAGAAGGGC 59.044 47.619 0.00 0.00 0.00 5.19
1996 2066 2.318908 TGCTGAAAACAGAAGGGCAAT 58.681 42.857 0.00 0.00 0.00 3.56
2082 2195 5.881923 ACTTGGTTAGACAGGTTGTAGAA 57.118 39.130 0.00 0.00 0.00 2.10
2127 2240 5.426689 TGATAGCTTCAAACAGAGATGGT 57.573 39.130 0.00 0.00 0.00 3.55
2188 2301 3.266510 TGCACAAGCTTAGACTATGGG 57.733 47.619 0.00 0.00 42.74 4.00
2290 2404 4.345288 CAAATGCAAGATCACCATGTACG 58.655 43.478 0.00 0.00 0.00 3.67
2292 2406 2.616960 TGCAAGATCACCATGTACGTC 58.383 47.619 0.00 0.00 0.00 4.34
2319 2434 5.982890 CTGAATGGTCAGGTATTTGGTTT 57.017 39.130 0.00 0.00 46.55 3.27
2344 2459 8.675705 TTGTTCAGTTGAGAAGATATGACAAA 57.324 30.769 0.00 0.00 0.00 2.83
2375 2498 2.742348 TCCGGTCTGAATAGCTGGTTA 58.258 47.619 0.00 0.00 32.01 2.85
2403 2527 3.305131 CCGTTGTTGAGCTGTGAGTACTA 60.305 47.826 0.00 0.00 0.00 1.82
2446 2570 5.355910 GGGTTTATTCCAGCGAAGTCAAATA 59.644 40.000 0.00 0.00 0.00 1.40
2511 2635 8.824756 TGGACAGAGATATCAGTTAGTACTTT 57.175 34.615 0.00 0.00 30.26 2.66
2547 2671 5.104982 AGTTGGTTGATTGGTTGAACACATT 60.105 36.000 0.00 0.00 0.00 2.71
2548 2672 4.691175 TGGTTGATTGGTTGAACACATTG 58.309 39.130 0.00 0.00 0.00 2.82
2579 2703 7.876936 ATCTGCTCATCTATGTTTGACATTT 57.123 32.000 0.00 0.00 39.88 2.32
2683 2814 6.072175 TGTTTTTCAAGCACCATATACTGTCC 60.072 38.462 0.00 0.00 0.00 4.02
2685 2816 4.672587 TCAAGCACCATATACTGTCCTC 57.327 45.455 0.00 0.00 0.00 3.71
2719 2851 4.101741 AGTCAAACACTACCTTTCTCTGCT 59.898 41.667 0.00 0.00 31.37 4.24
2720 2852 5.304614 AGTCAAACACTACCTTTCTCTGCTA 59.695 40.000 0.00 0.00 31.37 3.49
2721 2853 5.405873 GTCAAACACTACCTTTCTCTGCTAC 59.594 44.000 0.00 0.00 0.00 3.58
2722 2854 5.304614 TCAAACACTACCTTTCTCTGCTACT 59.695 40.000 0.00 0.00 0.00 2.57
2723 2855 5.394224 AACACTACCTTTCTCTGCTACTC 57.606 43.478 0.00 0.00 0.00 2.59
2724 2856 3.764972 ACACTACCTTTCTCTGCTACTCC 59.235 47.826 0.00 0.00 0.00 3.85
2725 2857 3.131400 CACTACCTTTCTCTGCTACTCCC 59.869 52.174 0.00 0.00 0.00 4.30
2726 2858 2.632763 ACCTTTCTCTGCTACTCCCT 57.367 50.000 0.00 0.00 0.00 4.20
2727 2859 2.462723 ACCTTTCTCTGCTACTCCCTC 58.537 52.381 0.00 0.00 0.00 4.30
2728 2860 1.760029 CCTTTCTCTGCTACTCCCTCC 59.240 57.143 0.00 0.00 0.00 4.30
2729 2861 1.407258 CTTTCTCTGCTACTCCCTCCG 59.593 57.143 0.00 0.00 0.00 4.63
2730 2862 0.331954 TTCTCTGCTACTCCCTCCGT 59.668 55.000 0.00 0.00 0.00 4.69
2731 2863 0.331954 TCTCTGCTACTCCCTCCGTT 59.668 55.000 0.00 0.00 0.00 4.44
2732 2864 0.741915 CTCTGCTACTCCCTCCGTTC 59.258 60.000 0.00 0.00 0.00 3.95
2733 2865 1.030488 TCTGCTACTCCCTCCGTTCG 61.030 60.000 0.00 0.00 0.00 3.95
2734 2866 2.005960 CTGCTACTCCCTCCGTTCGG 62.006 65.000 4.74 4.74 0.00 4.30
2735 2867 1.751927 GCTACTCCCTCCGTTCGGA 60.752 63.158 13.34 13.34 0.00 4.55
2736 2868 1.318158 GCTACTCCCTCCGTTCGGAA 61.318 60.000 14.79 0.04 33.41 4.30
2737 2869 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
2738 2870 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2739 2871 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2740 2872 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2741 2873 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2742 2874 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2743 2875 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2744 2876 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2745 2877 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2746 2878 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
2747 2879 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
2748 2880 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2749 2881 2.156117 CGTTCGGAATTACTTGTCGCAA 59.844 45.455 0.00 0.00 0.00 4.85
2750 2882 3.363182 CGTTCGGAATTACTTGTCGCAAA 60.363 43.478 0.00 0.00 0.00 3.68
2751 2883 4.529446 GTTCGGAATTACTTGTCGCAAAA 58.471 39.130 0.00 0.00 0.00 2.44
2752 2884 4.815040 TCGGAATTACTTGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
2753 2885 5.365403 TCGGAATTACTTGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
2754 2886 5.150683 TCGGAATTACTTGTCGCAAAAATG 58.849 37.500 0.00 0.00 0.00 2.32
2755 2887 4.323336 CGGAATTACTTGTCGCAAAAATGG 59.677 41.667 0.00 0.00 0.00 3.16
2756 2888 5.465935 GGAATTACTTGTCGCAAAAATGGA 58.534 37.500 0.00 0.00 0.00 3.41
2757 2889 6.099341 GGAATTACTTGTCGCAAAAATGGAT 58.901 36.000 0.00 0.00 0.00 3.41
2758 2890 6.034898 GGAATTACTTGTCGCAAAAATGGATG 59.965 38.462 0.00 0.00 0.00 3.51
2759 2891 5.446143 TTACTTGTCGCAAAAATGGATGT 57.554 34.783 0.00 0.00 0.00 3.06
2760 2892 6.561737 TTACTTGTCGCAAAAATGGATGTA 57.438 33.333 0.00 0.00 0.00 2.29
2761 2893 5.643379 ACTTGTCGCAAAAATGGATGTAT 57.357 34.783 0.00 0.00 0.00 2.29
2762 2894 5.640732 ACTTGTCGCAAAAATGGATGTATC 58.359 37.500 0.00 0.00 0.00 2.24
2763 2895 5.415701 ACTTGTCGCAAAAATGGATGTATCT 59.584 36.000 0.00 0.00 0.00 1.98
2764 2896 6.597672 ACTTGTCGCAAAAATGGATGTATCTA 59.402 34.615 0.00 0.00 0.00 1.98
2765 2897 6.358118 TGTCGCAAAAATGGATGTATCTAC 57.642 37.500 0.00 0.00 0.00 2.59
2766 2898 5.877564 TGTCGCAAAAATGGATGTATCTACA 59.122 36.000 0.00 0.00 40.98 2.74
2767 2899 6.372937 TGTCGCAAAAATGGATGTATCTACAA 59.627 34.615 0.00 0.00 39.99 2.41
2768 2900 6.687105 GTCGCAAAAATGGATGTATCTACAAC 59.313 38.462 0.00 0.00 39.99 3.32
2769 2901 6.597672 TCGCAAAAATGGATGTATCTACAACT 59.402 34.615 0.00 0.00 39.99 3.16
2770 2902 7.766738 TCGCAAAAATGGATGTATCTACAACTA 59.233 33.333 0.00 0.00 39.99 2.24
2771 2903 8.394877 CGCAAAAATGGATGTATCTACAACTAA 58.605 33.333 0.00 0.00 39.99 2.24
2801 2933 9.553064 ACATCTAGATACATTCATTTCTTGGAC 57.447 33.333 4.54 0.00 0.00 4.02
2802 2934 8.706936 CATCTAGATACATTCATTTCTTGGACG 58.293 37.037 4.54 0.00 0.00 4.79
2803 2935 8.007405 TCTAGATACATTCATTTCTTGGACGA 57.993 34.615 0.00 0.00 0.00 4.20
2804 2936 8.138074 TCTAGATACATTCATTTCTTGGACGAG 58.862 37.037 0.00 0.00 0.00 4.18
2805 2937 6.644347 AGATACATTCATTTCTTGGACGAGT 58.356 36.000 0.00 0.00 0.00 4.18
2806 2938 7.782049 AGATACATTCATTTCTTGGACGAGTA 58.218 34.615 0.00 0.00 0.00 2.59
2807 2939 8.258007 AGATACATTCATTTCTTGGACGAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
2808 2940 8.964476 ATACATTCATTTCTTGGACGAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
2809 2941 7.687941 ACATTCATTTCTTGGACGAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
2810 2942 7.752695 ACATTCATTTCTTGGACGAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
2811 2943 6.737254 TTCATTTCTTGGACGAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
2812 2944 4.868171 TCATTTCTTGGACGAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
2813 2945 4.524316 TTTCTTGGACGAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
2814 2946 4.524316 TTCTTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2815 2947 3.841643 TCTTGGACGAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2816 2948 2.267188 TGGACGAGTAATTCCGAACG 57.733 50.000 0.00 0.00 0.00 3.95
2817 2949 1.135315 TGGACGAGTAATTCCGAACGG 60.135 52.381 6.94 6.94 0.00 4.44
2818 2950 1.133025 GGACGAGTAATTCCGAACGGA 59.867 52.381 12.04 12.04 43.52 4.69
2819 2951 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
2820 2952 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
2821 2953 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
2822 2954 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
2823 2955 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2955 3087 7.287696 ACATACAAGAAAGGGTTTGTCAAAGAT 59.712 33.333 0.00 0.00 38.41 2.40
3096 3228 4.636648 TCCTGTGTTTTTGTTACATGTCGT 59.363 37.500 0.00 0.00 0.00 4.34
3203 3339 5.920193 TTTCATCCAATTGATCTGGGTTC 57.080 39.130 7.12 0.00 34.46 3.62
3208 3344 2.819608 CCAATTGATCTGGGTTCGTGTT 59.180 45.455 7.12 0.00 0.00 3.32
3240 3376 6.436027 TGTCTCCTATACCTTCTTCATCTGT 58.564 40.000 0.00 0.00 0.00 3.41
3241 3377 6.547880 TGTCTCCTATACCTTCTTCATCTGTC 59.452 42.308 0.00 0.00 0.00 3.51
3242 3378 6.015772 GTCTCCTATACCTTCTTCATCTGTCC 60.016 46.154 0.00 0.00 0.00 4.02
3243 3379 5.777449 TCCTATACCTTCTTCATCTGTCCA 58.223 41.667 0.00 0.00 0.00 4.02
3244 3380 5.598830 TCCTATACCTTCTTCATCTGTCCAC 59.401 44.000 0.00 0.00 0.00 4.02
3245 3381 5.600484 CCTATACCTTCTTCATCTGTCCACT 59.400 44.000 0.00 0.00 0.00 4.00
3246 3382 6.778069 CCTATACCTTCTTCATCTGTCCACTA 59.222 42.308 0.00 0.00 0.00 2.74
3336 3480 3.525862 ACTCAAGGACCCTGAATCTCTT 58.474 45.455 0.00 0.00 0.00 2.85
3342 3486 4.434195 AGGACCCTGAATCTCTTTCTCTT 58.566 43.478 0.00 0.00 35.23 2.85
3364 3519 1.691434 CTAGCCCCCTCTCATTGAGAC 59.309 57.143 12.38 2.96 45.39 3.36
3424 3580 8.474831 CAAGGATCCCGAACCTAATTTAATTTT 58.525 33.333 8.55 0.00 35.25 1.82
3452 3608 9.880157 CACCCTTAATGAAAATGATTTCTCAAT 57.120 29.630 0.00 0.00 44.32 2.57
3466 3622 8.883954 TGATTTCTCAATCAGACATATCAGAC 57.116 34.615 0.00 0.00 43.32 3.51
3467 3623 8.480501 TGATTTCTCAATCAGACATATCAGACA 58.519 33.333 0.00 0.00 43.32 3.41
3538 3695 3.611433 GCATTCCGCAATGTCTGTC 57.389 52.632 0.20 0.00 41.51 3.51
3556 3713 4.275689 TCTGTCAAAATGTGTGGTGATCAC 59.724 41.667 17.91 17.91 46.23 3.06
3565 3722 0.517316 GTGGTGATCACTGAAACGCC 59.483 55.000 24.50 6.78 42.86 5.68
3570 3929 0.716108 GATCACTGAAACGCCGTCAG 59.284 55.000 4.58 4.58 46.59 3.51
3573 3932 0.934496 CACTGAAACGCCGTCAGAAA 59.066 50.000 12.26 0.00 44.44 2.52
3578 3937 3.395639 TGAAACGCCGTCAGAAAGTATT 58.604 40.909 0.00 0.00 0.00 1.89
3664 4025 6.434028 AGGCTTTGCATTTTGATACAACTAGA 59.566 34.615 0.00 0.00 0.00 2.43
3669 4030 6.245408 TGCATTTTGATACAACTAGAAGGGT 58.755 36.000 0.00 0.00 0.00 4.34
3671 4032 7.552687 TGCATTTTGATACAACTAGAAGGGTAG 59.447 37.037 0.00 0.00 0.00 3.18
3689 4050 7.208064 AGGGTAGCCTAGAAAATACATTTGA 57.792 36.000 12.99 0.00 0.00 2.69
3693 4054 7.719633 GGTAGCCTAGAAAATACATTTGATGGA 59.280 37.037 0.00 0.00 33.60 3.41
3694 4055 7.573968 AGCCTAGAAAATACATTTGATGGAC 57.426 36.000 0.00 0.00 33.60 4.02
3695 4056 6.260936 AGCCTAGAAAATACATTTGATGGACG 59.739 38.462 0.00 0.00 33.60 4.79
3696 4057 6.260050 GCCTAGAAAATACATTTGATGGACGA 59.740 38.462 0.00 0.00 33.60 4.20
3698 4059 8.122952 CCTAGAAAATACATTTGATGGACGAAC 58.877 37.037 0.00 0.00 33.60 3.95
3699 4060 6.542852 AGAAAATACATTTGATGGACGAACG 58.457 36.000 0.00 0.00 33.60 3.95
3782 4144 8.852671 TTTGATTATTCAGAAAATATGGGGGT 57.147 30.769 0.00 0.00 32.27 4.95
3783 4145 9.944079 TTTGATTATTCAGAAAATATGGGGGTA 57.056 29.630 0.00 0.00 32.27 3.69
3784 4146 9.586732 TTGATTATTCAGAAAATATGGGGGTAG 57.413 33.333 0.00 0.00 32.27 3.18
3785 4147 8.732854 TGATTATTCAGAAAATATGGGGGTAGT 58.267 33.333 0.00 0.00 0.00 2.73
3786 4148 9.588096 GATTATTCAGAAAATATGGGGGTAGTT 57.412 33.333 0.00 0.00 0.00 2.24
3787 4149 9.951866 ATTATTCAGAAAATATGGGGGTAGTTT 57.048 29.630 0.00 0.00 0.00 2.66
3788 4150 9.777008 TTATTCAGAAAATATGGGGGTAGTTTT 57.223 29.630 0.00 0.00 0.00 2.43
3789 4151 7.475137 TTCAGAAAATATGGGGGTAGTTTTG 57.525 36.000 0.00 0.00 0.00 2.44
3790 4152 5.420739 TCAGAAAATATGGGGGTAGTTTTGC 59.579 40.000 0.00 0.00 0.00 3.68
3866 4234 7.397892 TTTTGATGGACAACAAAACAGTCTA 57.602 32.000 14.02 0.00 39.81 2.59
3877 4246 9.220767 ACAACAAAACAGTCTATCTTATCCTTC 57.779 33.333 0.00 0.00 0.00 3.46
3878 4247 8.669243 CAACAAAACAGTCTATCTTATCCTTCC 58.331 37.037 0.00 0.00 0.00 3.46
3893 4262 1.004862 CCTTCCCTTTCCTTCTGTCCC 59.995 57.143 0.00 0.00 0.00 4.46
3903 4272 3.551846 TCCTTCTGTCCCAAAAGTGTTC 58.448 45.455 0.00 0.00 0.00 3.18
3919 4288 5.319140 AGTGTTCTTTTTACCGCAAAAGT 57.681 34.783 6.82 0.00 42.26 2.66
4015 4393 2.364632 TCCCACAAGCATTACCAATCG 58.635 47.619 0.00 0.00 0.00 3.34
4090 4469 7.572523 TTGATGTATTTTGGATCAGATGGAC 57.427 36.000 0.00 0.00 0.00 4.02
4174 4568 7.381139 CAGGATAACGTTAATTTGTGCAAGTTT 59.619 33.333 12.81 0.00 0.00 2.66
4202 4596 2.544685 CGATTCCACCTACTGCTTCAG 58.455 52.381 0.00 0.00 37.52 3.02
4236 4630 4.585879 TCCCTTCTGCAATGGTAAGTAAC 58.414 43.478 0.00 0.00 0.00 2.50
4372 4768 3.402058 TGTTTTGTCGTTAAACGGTGG 57.598 42.857 0.00 0.00 42.81 4.61
4382 4778 2.752903 GTTAAACGGTGGAATGCCTGAT 59.247 45.455 0.00 0.00 34.31 2.90
4396 4792 2.507058 TGCCTGATGCTATCTTGACCTT 59.493 45.455 0.00 0.00 42.00 3.50
4405 4801 1.009829 ATCTTGACCTTTGATCGCGC 58.990 50.000 0.00 0.00 0.00 6.86
4409 4805 2.799540 GACCTTTGATCGCGCGACC 61.800 63.158 37.37 28.98 0.00 4.79
4534 4939 2.915869 AGGGACAGTGTTATCTCCCAA 58.084 47.619 17.00 0.00 39.75 4.12
4536 4941 3.852578 AGGGACAGTGTTATCTCCCAATT 59.147 43.478 17.00 0.00 39.75 2.32
4630 5036 5.278561 CGAGGAGTACCAGGTGAAGATAATC 60.279 48.000 0.76 0.00 38.94 1.75
4651 5057 4.734398 CTCTCAAGAGAAGTATGTGCCT 57.266 45.455 0.47 0.00 44.74 4.75
4652 5058 5.083533 CTCTCAAGAGAAGTATGTGCCTT 57.916 43.478 0.47 0.00 44.74 4.35
4826 5232 2.343246 GTCGATGTGCGTTACGAAATCA 59.657 45.455 9.62 1.56 41.80 2.57
4962 5369 4.020039 TGCGAATTAGGGGTTTGTCTTCTA 60.020 41.667 0.00 0.00 0.00 2.10
5059 5467 1.106285 GGTTGTCTTCCCCATGCATC 58.894 55.000 0.00 0.00 0.00 3.91
5082 5502 2.247637 CGCATGCAGATCAACTTTGTG 58.752 47.619 19.57 0.00 0.00 3.33
5154 5574 6.600822 CAGATTTTCCTGAGGATTTTCTAGCA 59.399 38.462 0.04 0.00 36.29 3.49
5156 5576 3.550437 TCCTGAGGATTTTCTAGCAGC 57.450 47.619 0.00 0.00 0.00 5.25
5165 5585 1.538047 TTTCTAGCAGCCCTTTGCAG 58.462 50.000 0.52 0.00 46.47 4.41
5166 5586 0.692476 TTCTAGCAGCCCTTTGCAGA 59.308 50.000 0.52 0.00 46.47 4.26
5169 5589 1.888512 CTAGCAGCCCTTTGCAGAAAA 59.111 47.619 0.52 0.00 46.47 2.29
5170 5590 1.345063 AGCAGCCCTTTGCAGAAAAT 58.655 45.000 0.52 0.00 46.47 1.82
5173 5593 2.224784 GCAGCCCTTTGCAGAAAATTTG 59.775 45.455 0.00 0.00 44.83 2.32
5174 5594 3.469739 CAGCCCTTTGCAGAAAATTTGT 58.530 40.909 0.00 0.00 44.83 2.83
5175 5595 3.249080 CAGCCCTTTGCAGAAAATTTGTG 59.751 43.478 0.00 0.00 44.83 3.33
5177 5597 3.248363 GCCCTTTGCAGAAAATTTGTGTC 59.752 43.478 4.79 0.00 40.77 3.67
5182 5606 6.480981 CCTTTGCAGAAAATTTGTGTCAAGAT 59.519 34.615 13.68 0.00 0.00 2.40
5185 5609 8.939201 TTGCAGAAAATTTGTGTCAAGATAAA 57.061 26.923 4.79 0.00 0.00 1.40
5207 5631 4.362932 TTTGTGTCGTGATTGCAGAAAA 57.637 36.364 0.00 0.00 0.00 2.29
5231 5655 2.097466 AGTTCGTGAAGTTTGGCTGTTG 59.903 45.455 0.00 0.00 0.00 3.33
5242 5666 7.768120 TGAAGTTTGGCTGTTGAAATAACAATT 59.232 29.630 0.00 0.00 32.36 2.32
5248 5672 7.914465 TGGCTGTTGAAATAACAATTTGAAAC 58.086 30.769 2.79 0.00 32.36 2.78
5250 5674 8.611757 GGCTGTTGAAATAACAATTTGAAACTT 58.388 29.630 2.79 0.00 32.36 2.66
5251 5675 9.424659 GCTGTTGAAATAACAATTTGAAACTTG 57.575 29.630 2.79 0.00 32.36 3.16
5273 5697 7.775561 ACTTGTGTGAAATAACCTTCTTTCTCT 59.224 33.333 0.00 0.00 33.50 3.10
5318 5742 5.010012 GTGGTGTCCTTGAAATTCAGTGATT 59.990 40.000 0.00 0.00 0.00 2.57
5320 5744 5.241506 GGTGTCCTTGAAATTCAGTGATTCA 59.758 40.000 5.27 5.27 0.00 2.57
5328 5752 5.352293 TGAAATTCAGTGATTCACTCCATCG 59.648 40.000 16.39 5.63 43.43 3.84
5345 5770 2.590092 GGCCTCCTGCGTACCATT 59.410 61.111 0.00 0.00 42.61 3.16
5346 5771 1.819632 GGCCTCCTGCGTACCATTG 60.820 63.158 0.00 0.00 42.61 2.82
5361 5786 6.961554 GCGTACCATTGAAATTCAAAGTAGAG 59.038 38.462 12.75 13.43 40.12 2.43
5384 5809 9.750125 AGAGTTGAATCAAAGTTAAATTTGGTC 57.250 29.630 23.72 20.59 39.99 4.02
5400 5827 5.462530 TTTGGTCAGAAACGAGATGACTA 57.537 39.130 12.12 6.01 42.36 2.59
5403 5830 3.444388 GGTCAGAAACGAGATGACTACCT 59.556 47.826 12.12 0.00 42.36 3.08
5415 5842 4.702131 AGATGACTACCTGAATTTTGGTGC 59.298 41.667 11.96 4.37 37.74 5.01
5416 5843 2.811431 TGACTACCTGAATTTTGGTGCG 59.189 45.455 11.96 6.87 37.74 5.34
5417 5844 2.159382 ACTACCTGAATTTTGGTGCGG 58.841 47.619 11.96 6.29 37.74 5.69
5418 5845 2.159382 CTACCTGAATTTTGGTGCGGT 58.841 47.619 11.96 0.00 37.74 5.68
5419 5846 1.408969 ACCTGAATTTTGGTGCGGTT 58.591 45.000 2.99 0.00 34.90 4.44
5420 5847 1.760029 ACCTGAATTTTGGTGCGGTTT 59.240 42.857 2.99 0.00 34.90 3.27
5421 5848 2.134346 CCTGAATTTTGGTGCGGTTTG 58.866 47.619 0.00 0.00 0.00 2.93
5422 5849 2.223923 CCTGAATTTTGGTGCGGTTTGA 60.224 45.455 0.00 0.00 0.00 2.69
5423 5850 3.452474 CTGAATTTTGGTGCGGTTTGAA 58.548 40.909 0.00 0.00 0.00 2.69
5424 5851 3.861840 TGAATTTTGGTGCGGTTTGAAA 58.138 36.364 0.00 0.00 0.00 2.69
5426 5853 5.601662 TGAATTTTGGTGCGGTTTGAAATA 58.398 33.333 0.00 0.00 0.00 1.40
5427 5854 5.694006 TGAATTTTGGTGCGGTTTGAAATAG 59.306 36.000 0.00 0.00 0.00 1.73
5428 5855 4.920640 TTTTGGTGCGGTTTGAAATAGA 57.079 36.364 0.00 0.00 0.00 1.98
5430 5857 5.461032 TTTGGTGCGGTTTGAAATAGATT 57.539 34.783 0.00 0.00 0.00 2.40
5431 5858 5.461032 TTGGTGCGGTTTGAAATAGATTT 57.539 34.783 0.00 0.00 0.00 2.17
5432 5859 4.804108 TGGTGCGGTTTGAAATAGATTTG 58.196 39.130 0.00 0.00 0.00 2.32
5433 5860 4.520874 TGGTGCGGTTTGAAATAGATTTGA 59.479 37.500 0.00 0.00 0.00 2.69
5434 5861 5.184864 TGGTGCGGTTTGAAATAGATTTGAT 59.815 36.000 0.00 0.00 0.00 2.57
5495 5928 1.545582 CATGTAACCTGCAAAGTGGGG 59.454 52.381 0.00 0.00 0.00 4.96
5504 5937 2.115266 AAAGTGGGGCCAGGAACG 59.885 61.111 4.39 0.00 0.00 3.95
5517 5979 3.611766 GCCAGGAACGGATTCTTTTTGTC 60.612 47.826 0.00 0.00 34.98 3.18
5518 5980 3.568007 CCAGGAACGGATTCTTTTTGTCA 59.432 43.478 0.00 0.00 34.98 3.58
5519 5981 4.037446 CCAGGAACGGATTCTTTTTGTCAA 59.963 41.667 0.00 0.00 34.98 3.18
5522 5984 6.533367 CAGGAACGGATTCTTTTTGTCAAAAA 59.467 34.615 19.69 19.69 37.99 1.94
5531 5993 7.462109 TTCTTTTTGTCAAAAACATGATCGG 57.538 32.000 17.56 7.49 37.82 4.18
5534 5996 5.766150 TTTGTCAAAAACATGATCGGACT 57.234 34.783 0.00 0.00 37.82 3.85
5535 5997 4.747540 TGTCAAAAACATGATCGGACTG 57.252 40.909 0.00 0.00 31.20 3.51
5617 6081 2.126228 GCAACCGTCCGATCGTGA 60.126 61.111 15.09 8.26 0.00 4.35
5622 6086 0.316204 ACCGTCCGATCGTGAAAACT 59.684 50.000 15.09 0.00 0.00 2.66
5709 6173 2.150218 CCGATTCGTCCACGTCACG 61.150 63.158 9.79 9.79 40.80 4.35
5712 6176 3.215597 ATTCGTCCACGTCACGCCA 62.216 57.895 10.99 2.18 40.80 5.69
5713 6177 2.702751 ATTCGTCCACGTCACGCCAA 62.703 55.000 10.99 3.17 40.80 4.52
5718 6182 4.354212 CACGTCACGCCAACGCTG 62.354 66.667 0.00 0.00 45.53 5.18
5722 6186 1.372499 GTCACGCCAACGCTGTAGA 60.372 57.895 0.00 0.00 45.53 2.59
5775 6239 0.038526 CCTCGTCCTGCAACGTACTT 60.039 55.000 10.50 0.00 43.08 2.24
5776 6240 1.060713 CTCGTCCTGCAACGTACTTG 58.939 55.000 10.50 0.00 43.08 3.16
5777 6241 0.319211 TCGTCCTGCAACGTACTTGG 60.319 55.000 10.50 0.00 43.08 3.61
5778 6242 0.319211 CGTCCTGCAACGTACTTGGA 60.319 55.000 2.74 0.00 37.86 3.53
5780 6244 0.320421 TCCTGCAACGTACTTGGAGC 60.320 55.000 15.92 3.82 44.89 4.70
5781 6245 0.320771 CCTGCAACGTACTTGGAGCT 60.321 55.000 15.92 0.00 44.89 4.09
5782 6246 1.067142 CCTGCAACGTACTTGGAGCTA 60.067 52.381 15.92 0.00 44.89 3.32
5783 6247 2.263077 CTGCAACGTACTTGGAGCTAG 58.737 52.381 11.48 0.00 40.97 3.42
5784 6248 1.000145 GCAACGTACTTGGAGCTAGC 59.000 55.000 6.62 6.62 0.00 3.42
5785 6249 1.404315 GCAACGTACTTGGAGCTAGCT 60.404 52.381 19.45 19.45 0.00 3.32
5786 6250 2.931320 GCAACGTACTTGGAGCTAGCTT 60.931 50.000 20.42 4.72 0.00 3.74
5788 6252 1.477295 ACGTACTTGGAGCTAGCTTCC 59.523 52.381 20.67 20.41 0.00 3.46
5789 6253 1.476891 CGTACTTGGAGCTAGCTTCCA 59.523 52.381 23.79 23.79 0.00 3.53
5802 6269 1.478510 AGCTTCCAGACGACATCGATT 59.521 47.619 8.54 0.00 43.02 3.34
5832 6299 4.505217 CATGGCTCGCGCGACAAC 62.505 66.667 31.40 21.38 36.88 3.32
5841 6308 4.000557 CGCGACAACGTTGCTGCT 62.001 61.111 30.39 14.57 40.50 4.24
5852 6319 3.958147 TTGCTGCTCGGGCTACTGC 62.958 63.158 9.62 8.52 39.59 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.650950 GCAGGGGGCAGTGGAAGA 61.651 66.667 0.00 0.00 43.97 2.87
230 232 9.166173 CAACTCAATCAATTATCTGTACCTTGA 57.834 33.333 0.00 0.00 0.00 3.02
337 339 7.677276 GCATCAGTTCAATGACATTGTAGTACC 60.677 40.741 23.98 6.55 41.02 3.34
371 395 5.163426 TGGCATCGATCAATTGGCTAAATTT 60.163 36.000 5.42 0.00 36.28 1.82
440 492 1.755179 AATGGCTCAATCAAGTCCCG 58.245 50.000 0.00 0.00 0.00 5.14
442 494 4.525912 AACAAATGGCTCAATCAAGTCC 57.474 40.909 0.00 0.00 0.00 3.85
525 580 2.695147 CCAGGAATAAAATGGAGGGTGC 59.305 50.000 0.00 0.00 36.09 5.01
551 606 2.945456 TCGTATATCAGAGGCAGTGGT 58.055 47.619 0.00 0.00 0.00 4.16
601 656 2.749621 CCACAAGCAGGAAGAATACACC 59.250 50.000 0.00 0.00 0.00 4.16
666 721 4.404073 ACATAGCAACTGGGAAAACAAACA 59.596 37.500 0.00 0.00 0.00 2.83
678 733 3.375299 GGCTTACCAAGACATAGCAACTG 59.625 47.826 0.00 0.00 36.21 3.16
715 770 2.091541 GAAAATCATGGAGCCGGTGAA 58.908 47.619 1.90 0.00 0.00 3.18
891 952 6.147328 GGTCCTGCATATAAAGAACCGATAAC 59.853 42.308 0.00 0.00 0.00 1.89
895 956 3.181458 GGGTCCTGCATATAAAGAACCGA 60.181 47.826 0.00 0.00 0.00 4.69
896 957 3.139077 GGGTCCTGCATATAAAGAACCG 58.861 50.000 0.00 0.00 0.00 4.44
904 965 6.430864 TGAATTCAAAAGGGTCCTGCATATA 58.569 36.000 5.45 0.00 0.00 0.86
905 966 5.271598 TGAATTCAAAAGGGTCCTGCATAT 58.728 37.500 5.45 0.00 0.00 1.78
922 983 5.193679 ACCCAAGCTGGTATACTTGAATTC 58.806 41.667 2.25 0.00 44.89 2.17
937 998 1.366319 ATCCAACTGAGACCCAAGCT 58.634 50.000 0.00 0.00 0.00 3.74
961 1022 6.754675 GGTACTTCTCTCTTATTCAAGTCTGC 59.245 42.308 0.00 0.00 33.20 4.26
1050 1111 1.605165 CCCGCCAAAACCAGCCTTA 60.605 57.895 0.00 0.00 0.00 2.69
1230 1291 3.947132 CTCCCGCTGCACCTCTGTG 62.947 68.421 0.00 0.00 45.65 3.66
1446 1507 4.264253 TGCATTGGGTATGAAAGAGTGAG 58.736 43.478 0.00 0.00 36.26 3.51
1449 1510 4.018960 AGACTGCATTGGGTATGAAAGAGT 60.019 41.667 0.00 0.00 36.26 3.24
1608 1669 5.222007 GGTCTCATCCATGACATTAAGGGAT 60.222 44.000 0.00 0.24 38.87 3.85
1802 1868 9.620660 CATACCAAGGTCACATTTAACTTAAAC 57.379 33.333 0.00 0.00 0.00 2.01
1823 1890 2.307686 TCCTGGTTGGTCTTTCCATACC 59.692 50.000 0.00 9.55 46.60 2.73
1838 1905 2.771372 ACAAAAGGTGCAAATTCCTGGT 59.229 40.909 0.00 0.00 33.97 4.00
1840 1907 6.366877 CAGATTACAAAAGGTGCAAATTCCTG 59.633 38.462 0.00 0.00 33.97 3.86
1846 1913 6.127479 ACAGTTCAGATTACAAAAGGTGCAAA 60.127 34.615 0.00 0.00 0.00 3.68
1850 1917 9.398170 CATTAACAGTTCAGATTACAAAAGGTG 57.602 33.333 0.00 0.00 0.00 4.00
1900 1967 6.498303 AGGTACCATTCTATCAGCACATATGA 59.502 38.462 15.94 0.00 0.00 2.15
1993 2063 3.721087 AAAGTAGGACACAGGGGATTG 57.279 47.619 0.00 0.00 0.00 2.67
1996 2066 3.555117 AGTAAAGTAGGACACAGGGGA 57.445 47.619 0.00 0.00 0.00 4.81
2043 2156 4.263905 ACCAAGTATCCAGGCATTTGAAGA 60.264 41.667 0.00 0.00 0.00 2.87
2082 2195 9.920946 ATCATAACCACAACCATTCTACTAAAT 57.079 29.630 0.00 0.00 0.00 1.40
2151 2264 1.402613 TGCATGAGTGTGTGCATATGC 59.597 47.619 21.09 21.09 45.60 3.14
2319 2434 8.675705 TTTGTCATATCTTCTCAACTGAACAA 57.324 30.769 0.00 0.00 0.00 2.83
2344 2459 2.739943 TCAGACCGGATCAGTCATTCT 58.260 47.619 9.46 0.00 36.68 2.40
2375 2498 0.606401 CAGCTCAACAACGGGACCAT 60.606 55.000 0.00 0.00 0.00 3.55
2414 2538 3.356290 GCTGGAATAAACCCTCACATGT 58.644 45.455 0.00 0.00 0.00 3.21
2415 2539 2.355756 CGCTGGAATAAACCCTCACATG 59.644 50.000 0.00 0.00 0.00 3.21
2511 2635 9.747898 ACCAATCAACCAACTAGTAAATCAATA 57.252 29.630 0.00 0.00 0.00 1.90
2547 2671 5.089434 ACATAGATGAGCAGATATCCACCA 58.911 41.667 0.00 0.00 0.00 4.17
2548 2672 5.674052 ACATAGATGAGCAGATATCCACC 57.326 43.478 0.00 0.00 0.00 4.61
2579 2703 8.229811 CGAAACAGTGTGATCAGAATTATTTCA 58.770 33.333 18.79 1.63 34.08 2.69
2589 2713 1.800805 AGGCGAAACAGTGTGATCAG 58.199 50.000 0.00 0.00 0.00 2.90
2626 2754 5.185454 TGATGGTCACATTGCCTAAACTAG 58.815 41.667 0.00 0.00 37.47 2.57
2683 2814 9.141400 GGTAGTGTTTGACTAACTGATAAAGAG 57.859 37.037 1.57 0.00 41.19 2.85
2719 2851 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2720 2852 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2721 2853 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2722 2854 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2723 2855 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2724 2856 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2725 2857 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
2726 2858 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
2727 2859 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
2728 2860 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2729 2861 3.799137 TTGCGACAAGTAATTCCGAAC 57.201 42.857 0.00 0.00 0.00 3.95
2730 2862 4.815040 TTTTGCGACAAGTAATTCCGAA 57.185 36.364 0.00 0.00 0.00 4.30
2731 2863 4.815040 TTTTTGCGACAAGTAATTCCGA 57.185 36.364 0.00 0.00 0.00 4.55
2732 2864 4.323336 CCATTTTTGCGACAAGTAATTCCG 59.677 41.667 0.00 0.00 0.00 4.30
2733 2865 5.465935 TCCATTTTTGCGACAAGTAATTCC 58.534 37.500 0.00 0.00 0.00 3.01
2734 2866 6.586082 ACATCCATTTTTGCGACAAGTAATTC 59.414 34.615 0.00 0.00 0.00 2.17
2735 2867 6.454795 ACATCCATTTTTGCGACAAGTAATT 58.545 32.000 0.00 0.00 0.00 1.40
2736 2868 6.024552 ACATCCATTTTTGCGACAAGTAAT 57.975 33.333 0.00 0.00 0.00 1.89
2737 2869 5.446143 ACATCCATTTTTGCGACAAGTAA 57.554 34.783 0.00 0.00 0.00 2.24
2738 2870 6.597672 AGATACATCCATTTTTGCGACAAGTA 59.402 34.615 0.00 0.00 0.00 2.24
2739 2871 5.415701 AGATACATCCATTTTTGCGACAAGT 59.584 36.000 0.00 0.00 0.00 3.16
2740 2872 5.883661 AGATACATCCATTTTTGCGACAAG 58.116 37.500 0.00 0.00 0.00 3.16
2741 2873 5.895636 AGATACATCCATTTTTGCGACAA 57.104 34.783 0.00 0.00 0.00 3.18
2742 2874 5.877564 TGTAGATACATCCATTTTTGCGACA 59.122 36.000 0.00 0.00 0.00 4.35
2743 2875 6.358118 TGTAGATACATCCATTTTTGCGAC 57.642 37.500 0.00 0.00 0.00 5.19
2744 2876 6.597672 AGTTGTAGATACATCCATTTTTGCGA 59.402 34.615 0.00 0.00 35.89 5.10
2745 2877 6.785191 AGTTGTAGATACATCCATTTTTGCG 58.215 36.000 0.00 0.00 35.89 4.85
2775 2907 9.553064 GTCCAAGAAATGAATGTATCTAGATGT 57.447 33.333 15.79 0.00 0.00 3.06
2776 2908 8.706936 CGTCCAAGAAATGAATGTATCTAGATG 58.293 37.037 15.79 0.00 0.00 2.90
2777 2909 8.642432 TCGTCCAAGAAATGAATGTATCTAGAT 58.358 33.333 10.73 10.73 0.00 1.98
2778 2910 8.007405 TCGTCCAAGAAATGAATGTATCTAGA 57.993 34.615 0.00 0.00 0.00 2.43
2779 2911 7.923344 ACTCGTCCAAGAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
2780 2912 7.782049 ACTCGTCCAAGAAATGAATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
2781 2913 6.644347 ACTCGTCCAAGAAATGAATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
2782 2914 6.910536 ACTCGTCCAAGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
2783 2915 8.964476 ATTACTCGTCCAAGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
2784 2916 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
2785 2917 7.148239 GGAATTACTCGTCCAAGAAATGAATGT 60.148 37.037 0.00 0.00 33.79 2.71
2786 2918 7.189512 GGAATTACTCGTCCAAGAAATGAATG 58.810 38.462 0.00 0.00 33.79 2.67
2787 2919 6.037172 CGGAATTACTCGTCCAAGAAATGAAT 59.963 38.462 0.00 0.00 33.10 2.57
2788 2920 5.350365 CGGAATTACTCGTCCAAGAAATGAA 59.650 40.000 0.00 0.00 33.10 2.57
2789 2921 4.868171 CGGAATTACTCGTCCAAGAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
2790 2922 4.868171 TCGGAATTACTCGTCCAAGAAATG 59.132 41.667 0.00 0.00 33.10 2.32
2791 2923 5.080969 TCGGAATTACTCGTCCAAGAAAT 57.919 39.130 0.00 0.00 33.10 2.17
2792 2924 4.524316 TCGGAATTACTCGTCCAAGAAA 57.476 40.909 0.00 0.00 33.10 2.52
2793 2925 4.240096 GTTCGGAATTACTCGTCCAAGAA 58.760 43.478 0.00 0.00 33.10 2.52
2794 2926 3.671433 CGTTCGGAATTACTCGTCCAAGA 60.671 47.826 0.00 0.00 33.10 3.02
2795 2927 2.597305 CGTTCGGAATTACTCGTCCAAG 59.403 50.000 0.00 0.00 33.10 3.61
2796 2928 2.598589 CGTTCGGAATTACTCGTCCAA 58.401 47.619 0.00 0.00 33.10 3.53
2797 2929 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
2798 2930 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
2799 2931 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
2800 2932 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
2801 2933 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
2802 2934 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
2803 2935 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2804 2936 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2805 2937 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2806 2938 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2807 2939 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
2808 2940 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
2809 2941 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
2810 2942 1.403323 GTAACTACTCCCTCCGTTCGG 59.597 57.143 4.74 4.74 0.00 4.30
2811 2943 2.086869 TGTAACTACTCCCTCCGTTCG 58.913 52.381 0.00 0.00 0.00 3.95
2812 2944 4.525912 TTTGTAACTACTCCCTCCGTTC 57.474 45.455 0.00 0.00 0.00 3.95
2813 2945 4.529377 TCATTTGTAACTACTCCCTCCGTT 59.471 41.667 0.00 0.00 0.00 4.44
2814 2946 4.091549 TCATTTGTAACTACTCCCTCCGT 58.908 43.478 0.00 0.00 0.00 4.69
2815 2947 4.730949 TCATTTGTAACTACTCCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
2816 2948 6.235231 TGATCATTTGTAACTACTCCCTCC 57.765 41.667 0.00 0.00 0.00 4.30
2817 2949 8.738645 ATTTGATCATTTGTAACTACTCCCTC 57.261 34.615 0.00 0.00 0.00 4.30
2818 2950 8.552296 AGATTTGATCATTTGTAACTACTCCCT 58.448 33.333 0.00 0.00 0.00 4.20
2819 2951 8.738645 AGATTTGATCATTTGTAACTACTCCC 57.261 34.615 0.00 0.00 0.00 4.30
2820 2952 9.606631 AGAGATTTGATCATTTGTAACTACTCC 57.393 33.333 0.00 0.00 0.00 3.85
2955 3087 2.093306 ATCGACGTGCTTCATCCAAA 57.907 45.000 0.00 0.00 0.00 3.28
3119 3255 5.349543 GCAAATTCCTGCGAATCAAAATTCT 59.650 36.000 0.00 0.00 37.76 2.40
3203 3339 8.794553 AGGTATAGGAGACATTTAGATAACACG 58.205 37.037 0.00 0.00 0.00 4.49
3336 3480 0.043334 AGAGGGGGCTAGCAAGAGAA 59.957 55.000 18.24 0.00 0.00 2.87
3342 3486 0.326522 TCAATGAGAGGGGGCTAGCA 60.327 55.000 18.24 0.00 0.00 3.49
3424 3580 9.087871 TGAGAAATCATTTTCATTAAGGGTGAA 57.912 29.630 1.74 0.00 43.09 3.18
3460 3616 8.760735 AGCTAGCATCAAGATATTATGTCTGAT 58.239 33.333 18.83 0.00 0.00 2.90
3461 3617 8.131847 AGCTAGCATCAAGATATTATGTCTGA 57.868 34.615 18.83 0.00 0.00 3.27
3462 3618 9.866798 TTAGCTAGCATCAAGATATTATGTCTG 57.133 33.333 18.83 0.00 0.00 3.51
3464 3620 9.311916 CCTTAGCTAGCATCAAGATATTATGTC 57.688 37.037 18.83 0.00 0.00 3.06
3465 3621 9.040259 TCCTTAGCTAGCATCAAGATATTATGT 57.960 33.333 18.83 0.00 0.00 2.29
3556 3713 1.217882 ACTTTCTGACGGCGTTTCAG 58.782 50.000 16.19 18.10 41.72 3.02
3573 3932 9.284968 AGTTTAATGCAACAGAAGTACAATACT 57.715 29.630 0.00 0.00 41.73 2.12
3578 3937 6.058833 TCCAGTTTAATGCAACAGAAGTACA 58.941 36.000 0.00 0.00 0.00 2.90
3664 4025 7.639378 TCAAATGTATTTTCTAGGCTACCCTT 58.361 34.615 0.00 0.00 42.87 3.95
3669 4030 7.441157 CGTCCATCAAATGTATTTTCTAGGCTA 59.559 37.037 0.00 0.00 0.00 3.93
3671 4032 6.260050 TCGTCCATCAAATGTATTTTCTAGGC 59.740 38.462 0.00 0.00 0.00 3.93
3689 4050 1.270094 TGTTTGCTCTCGTTCGTCCAT 60.270 47.619 0.00 0.00 0.00 3.41
3693 4054 4.271533 TGTTTTATGTTTGCTCTCGTTCGT 59.728 37.500 0.00 0.00 0.00 3.85
3694 4055 4.768145 TGTTTTATGTTTGCTCTCGTTCG 58.232 39.130 0.00 0.00 0.00 3.95
3695 4056 7.444558 TTTTGTTTTATGTTTGCTCTCGTTC 57.555 32.000 0.00 0.00 0.00 3.95
3696 4057 7.010091 CCTTTTTGTTTTATGTTTGCTCTCGTT 59.990 33.333 0.00 0.00 0.00 3.85
3698 4059 6.695278 TCCTTTTTGTTTTATGTTTGCTCTCG 59.305 34.615 0.00 0.00 0.00 4.04
3699 4060 8.419076 TTCCTTTTTGTTTTATGTTTGCTCTC 57.581 30.769 0.00 0.00 0.00 3.20
3761 4123 9.951866 AAACTACCCCCATATTTTCTGAATAAT 57.048 29.630 0.00 0.00 0.00 1.28
3764 4126 7.364673 GCAAAACTACCCCCATATTTTCTGAAT 60.365 37.037 0.00 0.00 0.00 2.57
3781 4143 6.976350 CTCTTACAGCAAAAGCAAAACTAC 57.024 37.500 0.00 0.00 0.00 2.73
3813 4175 4.137543 AGACAAGAGAAATTGTGACCCAC 58.862 43.478 0.00 0.00 43.32 4.61
3866 4234 5.733647 ACAGAAGGAAAGGGAAGGATAAGAT 59.266 40.000 0.00 0.00 0.00 2.40
3877 4246 2.675658 TTTGGGACAGAAGGAAAGGG 57.324 50.000 0.00 0.00 42.39 3.95
3893 4262 6.396459 TTTGCGGTAAAAAGAACACTTTTG 57.604 33.333 8.38 0.00 41.19 2.44
3919 4288 0.401356 TGAATTGGCAGAGCACCTGA 59.599 50.000 9.90 0.00 45.78 3.86
3998 4376 4.621068 ATCACGATTGGTAATGCTTGTG 57.379 40.909 0.00 0.00 0.00 3.33
4015 4393 8.884726 GGAAACAGAAGGAAATAGAACTATCAC 58.115 37.037 0.00 0.00 0.00 3.06
4090 4469 7.972832 GCTTCCTTTTCTTTCCAATCTATTCTG 59.027 37.037 0.00 0.00 0.00 3.02
4129 4523 3.430098 CCTGACAGTCATTCAGCCTCTAC 60.430 52.174 2.97 0.00 39.43 2.59
4132 4526 1.552337 TCCTGACAGTCATTCAGCCTC 59.448 52.381 2.97 0.00 39.43 4.70
4174 4568 1.898330 TAGGTGGAATCGCTGCTGCA 61.898 55.000 16.29 0.88 39.64 4.41
4202 4596 2.685388 GCAGAAGGGAAACTAATGAGCC 59.315 50.000 0.00 0.00 0.00 4.70
4382 4778 3.198068 GCGATCAAAGGTCAAGATAGCA 58.802 45.455 0.00 0.00 39.29 3.49
4396 4792 2.813474 CAAGGGTCGCGCGATCAA 60.813 61.111 40.11 15.66 0.00 2.57
4405 4801 1.742761 ATGCATGAGAACAAGGGTCG 58.257 50.000 0.00 0.00 0.00 4.79
4409 4805 1.134907 GCCCAATGCATGAGAACAAGG 60.135 52.381 0.00 0.00 40.77 3.61
4503 4908 3.314693 ACACTGTCCCTTTTCCTACAGA 58.685 45.455 8.21 0.00 41.47 3.41
4516 4921 3.378427 GCAATTGGGAGATAACACTGTCC 59.622 47.826 7.72 0.00 0.00 4.02
4534 4939 0.956902 TGCACGCAGACTCATGCAAT 60.957 50.000 0.00 0.00 46.87 3.56
4536 4941 2.030862 TGCACGCAGACTCATGCA 59.969 55.556 0.00 0.00 46.87 3.96
4630 5036 4.734398 AGGCACATACTTCTCTTGAGAG 57.266 45.455 1.51 1.51 43.36 3.20
4652 5058 5.220777 CGCCAAGACAGAAACAGAGTAAAAA 60.221 40.000 0.00 0.00 0.00 1.94
4751 5157 1.484240 CCTCTCCAGACACCAAGGATC 59.516 57.143 0.00 0.00 0.00 3.36
4804 5210 1.062258 TTTCGTAACGCACATCGACC 58.938 50.000 0.00 0.00 41.67 4.79
4826 5232 0.927767 ACCCCATCTCCTCGTACTCT 59.072 55.000 0.00 0.00 0.00 3.24
4922 5328 1.701704 GCATGCCACTTGCTAAACAC 58.298 50.000 6.36 0.00 42.00 3.32
4962 5369 5.914898 ACTGAACTTGCTAAACCTTTTGT 57.085 34.783 0.00 0.00 0.00 2.83
4974 5381 5.757886 TGTTAGTGCAAATACTGAACTTGC 58.242 37.500 0.00 0.00 41.74 4.01
5059 5467 0.806868 AAGTTGATCTGCATGCGTGG 59.193 50.000 14.09 6.00 0.00 4.94
5082 5502 3.057315 CACCCACAACTGAATCCATTCAC 60.057 47.826 0.00 0.00 41.51 3.18
5154 5574 3.118298 ACACAAATTTTCTGCAAAGGGCT 60.118 39.130 0.00 0.00 45.15 5.19
5156 5576 4.440880 TGACACAAATTTTCTGCAAAGGG 58.559 39.130 0.00 0.00 0.00 3.95
5169 5589 8.134895 ACGACACAAATTTATCTTGACACAAAT 58.865 29.630 0.00 0.00 0.00 2.32
5170 5590 7.430793 CACGACACAAATTTATCTTGACACAAA 59.569 33.333 0.00 0.00 0.00 2.83
5173 5593 6.655062 TCACGACACAAATTTATCTTGACAC 58.345 36.000 0.00 0.00 0.00 3.67
5174 5594 6.852858 TCACGACACAAATTTATCTTGACA 57.147 33.333 0.00 0.00 0.00 3.58
5175 5595 7.201266 GCAATCACGACACAAATTTATCTTGAC 60.201 37.037 7.29 0.00 0.00 3.18
5177 5597 6.581919 TGCAATCACGACACAAATTTATCTTG 59.418 34.615 0.00 0.00 0.00 3.02
5182 5606 5.681337 TCTGCAATCACGACACAAATTTA 57.319 34.783 0.00 0.00 0.00 1.40
5185 5609 4.566545 TTTCTGCAATCACGACACAAAT 57.433 36.364 0.00 0.00 0.00 2.32
5190 5614 3.814842 ACTCATTTTCTGCAATCACGACA 59.185 39.130 0.00 0.00 0.00 4.35
5207 5631 2.549754 CAGCCAAACTTCACGAACTCAT 59.450 45.455 0.00 0.00 0.00 2.90
5242 5666 8.062065 AGAAGGTTATTTCACACAAGTTTCAA 57.938 30.769 0.00 0.00 0.00 2.69
5248 5672 8.159344 AGAGAAAGAAGGTTATTTCACACAAG 57.841 34.615 11.34 0.00 39.99 3.16
5250 5674 9.436957 GATAGAGAAAGAAGGTTATTTCACACA 57.563 33.333 11.34 0.42 39.99 3.72
5251 5675 8.884726 GGATAGAGAAAGAAGGTTATTTCACAC 58.115 37.037 11.34 4.08 39.99 3.82
5258 5682 7.829706 GGTGTTTGGATAGAGAAAGAAGGTTAT 59.170 37.037 0.00 0.00 0.00 1.89
5259 5683 7.017254 AGGTGTTTGGATAGAGAAAGAAGGTTA 59.983 37.037 0.00 0.00 0.00 2.85
5273 5697 3.581755 CGTCGAAAGAGGTGTTTGGATA 58.418 45.455 0.00 0.00 43.49 2.59
5318 5742 2.060383 CAGGAGGCCGATGGAGTGA 61.060 63.158 0.00 0.00 0.00 3.41
5320 5744 3.474570 GCAGGAGGCCGATGGAGT 61.475 66.667 0.00 0.00 36.11 3.85
5328 5752 1.819632 CAATGGTACGCAGGAGGCC 60.820 63.158 0.00 0.00 40.31 5.19
5361 5786 9.528018 TCTGACCAAATTTAACTTTGATTCAAC 57.472 29.630 17.24 5.26 38.17 3.18
5370 5795 7.562454 TCTCGTTTCTGACCAAATTTAACTT 57.438 32.000 0.00 0.00 0.00 2.66
5372 5797 7.534239 GTCATCTCGTTTCTGACCAAATTTAAC 59.466 37.037 0.00 0.00 34.55 2.01
5384 5809 4.703645 TCAGGTAGTCATCTCGTTTCTG 57.296 45.455 0.00 0.00 0.00 3.02
5388 5815 5.643777 CCAAAATTCAGGTAGTCATCTCGTT 59.356 40.000 0.00 0.00 0.00 3.85
5400 5827 1.408969 AACCGCACCAAAATTCAGGT 58.591 45.000 0.00 0.00 39.10 4.00
5403 5830 3.526931 TTCAAACCGCACCAAAATTCA 57.473 38.095 0.00 0.00 0.00 2.57
5415 5842 8.438676 AGAGGTATCAAATCTATTTCAAACCG 57.561 34.615 0.00 0.00 31.74 4.44
5418 5845 9.189156 CCCAAGAGGTATCAAATCTATTTCAAA 57.811 33.333 0.00 0.00 0.00 2.69
5419 5846 8.752005 CCCAAGAGGTATCAAATCTATTTCAA 57.248 34.615 0.00 0.00 0.00 2.69
5466 5899 9.638239 CACTTTGCAGGTTACATGTATAAATTT 57.362 29.630 6.36 0.00 0.00 1.82
5471 5904 5.189928 CCCACTTTGCAGGTTACATGTATA 58.810 41.667 6.36 0.00 0.00 1.47
5485 5918 2.203625 TTCCTGGCCCCACTTTGC 60.204 61.111 0.00 0.00 0.00 3.68
5495 5928 2.296190 ACAAAAAGAATCCGTTCCTGGC 59.704 45.455 0.00 0.00 34.81 4.85
5504 5937 8.216453 CGATCATGTTTTTGACAAAAAGAATCC 58.784 33.333 23.11 13.23 42.62 3.01
5517 5979 4.858935 ACAACAGTCCGATCATGTTTTTG 58.141 39.130 0.00 0.00 35.04 2.44
5518 5980 5.067153 TCAACAACAGTCCGATCATGTTTTT 59.933 36.000 0.00 0.00 35.04 1.94
5519 5981 4.578516 TCAACAACAGTCCGATCATGTTTT 59.421 37.500 0.00 0.00 35.04 2.43
5522 5984 3.067106 GTCAACAACAGTCCGATCATGT 58.933 45.455 0.00 0.00 0.00 3.21
5603 6067 0.316204 AGTTTTCACGATCGGACGGT 59.684 50.000 20.98 0.00 37.61 4.83
5617 6081 1.276989 TCGATCTGGGCCGTTAGTTTT 59.723 47.619 0.00 0.00 0.00 2.43
5622 6086 1.721664 CGAGTCGATCTGGGCCGTTA 61.722 60.000 6.73 0.00 0.00 3.18
5658 6122 4.778415 CGGTCTGTCCCACGCGAG 62.778 72.222 15.93 4.16 0.00 5.03
5684 6148 2.202892 GGACGAATCGGAGGTGGC 60.203 66.667 7.80 0.00 0.00 5.01
5709 6173 1.448013 GGAGGTCTACAGCGTTGGC 60.448 63.158 3.74 0.00 40.37 4.52
5712 6176 0.896226 GAAGGGAGGTCTACAGCGTT 59.104 55.000 0.00 0.00 0.00 4.84
5713 6177 1.313812 CGAAGGGAGGTCTACAGCGT 61.314 60.000 0.00 0.00 0.00 5.07
5718 6182 2.104530 GCGCGAAGGGAGGTCTAC 59.895 66.667 12.10 0.00 46.37 2.59
5722 6186 1.906105 TTTATGGCGCGAAGGGAGGT 61.906 55.000 12.10 0.00 46.37 3.85
5775 6239 0.323451 TCGTCTGGAAGCTAGCTCCA 60.323 55.000 25.08 25.08 0.00 3.86
5776 6240 0.101579 GTCGTCTGGAAGCTAGCTCC 59.898 60.000 19.65 20.01 0.00 4.70
5777 6241 0.811915 TGTCGTCTGGAAGCTAGCTC 59.188 55.000 19.65 11.44 0.00 4.09
5778 6242 1.407258 GATGTCGTCTGGAAGCTAGCT 59.593 52.381 12.68 12.68 0.00 3.32
5780 6244 1.671328 TCGATGTCGTCTGGAAGCTAG 59.329 52.381 2.04 0.00 40.80 3.42
5781 6245 1.746470 TCGATGTCGTCTGGAAGCTA 58.254 50.000 2.04 0.00 40.80 3.32
5782 6246 1.107114 ATCGATGTCGTCTGGAAGCT 58.893 50.000 0.00 0.00 40.80 3.74
5783 6247 1.590238 CAATCGATGTCGTCTGGAAGC 59.410 52.381 0.00 0.00 40.80 3.86
5784 6248 3.150848 TCAATCGATGTCGTCTGGAAG 57.849 47.619 0.00 0.00 40.80 3.46
5785 6249 3.706698 GATCAATCGATGTCGTCTGGAA 58.293 45.455 0.00 0.00 40.80 3.53
5786 6250 3.355626 GATCAATCGATGTCGTCTGGA 57.644 47.619 0.00 0.00 40.80 3.86
5824 6291 3.893914 GAGCAGCAACGTTGTCGCG 62.894 63.158 27.78 16.82 41.18 5.87
5830 6297 3.234630 TAGCCCGAGCAGCAACGTT 62.235 57.895 0.00 0.00 43.56 3.99
5832 6299 3.188786 GTAGCCCGAGCAGCAACG 61.189 66.667 0.00 0.00 43.56 4.10
5835 6302 4.457496 GCAGTAGCCCGAGCAGCA 62.457 66.667 0.00 0.00 43.56 4.41
5836 6303 4.154347 AGCAGTAGCCCGAGCAGC 62.154 66.667 0.00 0.00 43.56 5.25
5837 6304 2.105930 GAGCAGTAGCCCGAGCAG 59.894 66.667 0.00 0.00 43.56 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.