Multiple sequence alignment - TraesCS2D01G600300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G600300 chr2D 100.000 5948 0 0 1 5948 651073052 651067105 0.000000e+00 10984.0
1 TraesCS2D01G600300 chr2D 79.720 143 29 0 2130 2272 514946923 514947065 2.930000e-18 104.0
2 TraesCS2D01G600300 chr2D 79.439 107 20 2 2152 2257 548632169 548632274 2.300000e-09 75.0
3 TraesCS2D01G600300 chr2D 100.000 29 0 0 5059 5087 101985538 101985566 3.000000e-03 54.7
4 TraesCS2D01G600300 chr2D 100.000 29 0 0 5059 5087 536530892 536530864 3.000000e-03 54.7
5 TraesCS2D01G600300 chr2B 92.779 2839 129 29 1 2832 780018025 780015256 0.000000e+00 4037.0
6 TraesCS2D01G600300 chr2B 94.684 1900 73 10 4054 5948 780013731 780011855 0.000000e+00 2924.0
7 TraesCS2D01G600300 chr2B 88.487 912 89 9 3032 3934 780015261 780014357 0.000000e+00 1088.0
8 TraesCS2D01G600300 chr2B 80.420 143 28 0 2130 2272 606613516 606613658 6.300000e-20 110.0
9 TraesCS2D01G600300 chr2B 97.059 34 1 0 5061 5094 431775458 431775491 2.320000e-04 58.4
10 TraesCS2D01G600300 chr2B 100.000 30 0 0 5059 5088 638766080 638766051 8.330000e-04 56.5
11 TraesCS2D01G600300 chr2A 92.562 2662 126 18 1 2623 776599157 776601785 0.000000e+00 3753.0
12 TraesCS2D01G600300 chr2A 91.663 2063 137 17 3032 5074 776601953 776604000 0.000000e+00 2824.0
13 TraesCS2D01G600300 chr2A 90.575 817 74 3 5134 5948 776604007 776604822 0.000000e+00 1079.0
14 TraesCS2D01G600300 chr2A 88.732 142 11 3 3031 3172 737498129 737498265 1.030000e-37 169.0
15 TraesCS2D01G600300 chr2A 83.333 132 22 0 2130 2261 658907476 658907607 8.100000e-24 122.0
16 TraesCS2D01G600300 chr3B 85.773 731 95 9 5141 5867 79271994 79271269 0.000000e+00 765.0
17 TraesCS2D01G600300 chr3B 81.865 193 25 8 3032 3221 685258348 685258163 2.870000e-33 154.0
18 TraesCS2D01G600300 chr3B 73.234 269 57 10 1253 1515 13246286 13246545 3.820000e-12 84.2
19 TraesCS2D01G600300 chr3B 100.000 29 0 0 5061 5089 815158540 815158512 3.000000e-03 54.7
20 TraesCS2D01G600300 chr3D 85.914 717 82 12 5207 5906 49774798 49774084 0.000000e+00 747.0
21 TraesCS2D01G600300 chr3D 72.826 276 57 13 1255 1522 5409970 5409705 1.780000e-10 78.7
22 TraesCS2D01G600300 chr3D 77.500 120 27 0 2151 2270 5329782 5329901 8.270000e-09 73.1
23 TraesCS2D01G600300 chr3D 100.000 30 0 0 1024 1053 573935092 573935063 8.330000e-04 56.5
24 TraesCS2D01G600300 chr5B 83.478 805 113 18 5141 5935 619035 619829 0.000000e+00 732.0
25 TraesCS2D01G600300 chr4B 82.996 841 108 17 5137 5948 3910883 3910049 0.000000e+00 728.0
26 TraesCS2D01G600300 chr4B 90.667 75 7 0 2758 2832 368106065 368106139 3.790000e-17 100.0
27 TraesCS2D01G600300 chr7A 82.759 841 110 15 5137 5948 217582913 217583747 0.000000e+00 717.0
28 TraesCS2D01G600300 chr7A 82.682 179 24 6 3019 3194 156116724 156116898 1.030000e-32 152.0
29 TraesCS2D01G600300 chr5D 85.217 690 90 9 5137 5820 396813388 396812705 0.000000e+00 699.0
30 TraesCS2D01G600300 chr1B 85.316 681 89 10 5137 5810 407306716 407307392 0.000000e+00 693.0
31 TraesCS2D01G600300 chr6A 90.476 147 11 1 3031 3177 601961210 601961353 2.190000e-44 191.0
32 TraesCS2D01G600300 chr6A 88.889 153 12 3 3032 3183 588600968 588601116 3.660000e-42 183.0
33 TraesCS2D01G600300 chr6D 88.889 153 12 3 3032 3183 440639578 440639726 3.660000e-42 183.0
34 TraesCS2D01G600300 chr3A 84.324 185 22 5 3019 3202 744684658 744684836 2.200000e-39 174.0
35 TraesCS2D01G600300 chr3A 72.924 277 59 11 1253 1522 16009474 16009741 1.370000e-11 82.4
36 TraesCS2D01G600300 chr3A 77.500 120 27 0 2146 2265 17332573 17332692 8.270000e-09 73.1
37 TraesCS2D01G600300 chr3A 77.391 115 26 0 2151 2265 16233504 16233390 1.070000e-07 69.4
38 TraesCS2D01G600300 chr4D 91.781 73 6 0 2760 2832 77229263 77229191 1.050000e-17 102.0
39 TraesCS2D01G600300 chr4D 91.429 70 4 2 2764 2832 109270155 109270223 1.760000e-15 95.3
40 TraesCS2D01G600300 chr7D 92.754 69 4 1 2764 2832 135255172 135255239 1.360000e-16 99.0
41 TraesCS2D01G600300 chr7D 100.000 30 0 0 1024 1053 60588173 60588144 8.330000e-04 56.5
42 TraesCS2D01G600300 chr1A 87.952 83 8 2 2750 2832 14087457 14087377 4.910000e-16 97.1
43 TraesCS2D01G600300 chr1A 88.000 75 9 0 2758 2832 14115838 14115764 8.210000e-14 89.8
44 TraesCS2D01G600300 chr1D 89.333 75 8 0 2758 2832 12174669 12174595 1.760000e-15 95.3
45 TraesCS2D01G600300 chr1D 88.000 75 9 0 2758 2832 12232350 12232276 8.210000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G600300 chr2D 651067105 651073052 5947 True 10984 10984 100.000000 1 5948 1 chr2D.!!$R2 5947
1 TraesCS2D01G600300 chr2B 780011855 780018025 6170 True 2683 4037 91.983333 1 5948 3 chr2B.!!$R2 5947
2 TraesCS2D01G600300 chr2A 776599157 776604822 5665 False 2552 3753 91.600000 1 5948 3 chr2A.!!$F3 5947
3 TraesCS2D01G600300 chr3B 79271269 79271994 725 True 765 765 85.773000 5141 5867 1 chr3B.!!$R1 726
4 TraesCS2D01G600300 chr3D 49774084 49774798 714 True 747 747 85.914000 5207 5906 1 chr3D.!!$R2 699
5 TraesCS2D01G600300 chr5B 619035 619829 794 False 732 732 83.478000 5141 5935 1 chr5B.!!$F1 794
6 TraesCS2D01G600300 chr4B 3910049 3910883 834 True 728 728 82.996000 5137 5948 1 chr4B.!!$R1 811
7 TraesCS2D01G600300 chr7A 217582913 217583747 834 False 717 717 82.759000 5137 5948 1 chr7A.!!$F2 811
8 TraesCS2D01G600300 chr5D 396812705 396813388 683 True 699 699 85.217000 5137 5820 1 chr5D.!!$R1 683
9 TraesCS2D01G600300 chr1B 407306716 407307392 676 False 693 693 85.316000 5137 5810 1 chr1B.!!$F1 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 926 0.178955 TACCTGGACTCGAACACCCA 60.179 55.0 0.00 0.00 0.00 4.51 F
1581 1610 0.497265 GTCAACAGACGAACGTCACG 59.503 55.0 25.13 18.51 46.76 4.35 F
2927 2977 0.105760 ACACCATGCAACCCCTTCAA 60.106 50.0 0.00 0.00 0.00 2.69 F
2977 3027 0.034059 CATACCGCCTCCATCTGACC 59.966 60.0 0.00 0.00 0.00 4.02 F
2983 3033 0.036022 GCCTCCATCTGACCCTATGC 59.964 60.0 0.00 0.00 0.00 3.14 F
3007 3057 0.173481 TCTCGACACAGTGCATAGGC 59.827 55.0 0.00 0.00 41.68 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 1874 0.035458 CTTGGAGGAAGCAACGGTCT 59.965 55.000 0.00 0.00 0.00 3.85 R
2958 3008 0.034059 GGTCAGATGGAGGCGGTATG 59.966 60.000 0.00 0.00 0.00 2.39 R
4099 4673 0.034670 CCCAGCTCTTTCCTCCCTTG 60.035 60.000 0.00 0.00 0.00 3.61 R
4380 4954 0.458716 GGTCGAAGAAGAAGAGCCCG 60.459 60.000 0.00 0.00 39.69 6.13 R
4698 5272 1.065251 GCGGTTCGGAGAGTAAGTAGG 59.935 57.143 0.00 0.00 38.43 3.18 R
5004 5579 6.634805 ACAACACATGGAGTATTCTCTAGTG 58.365 40.000 13.43 13.43 40.29 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
283 284 3.315949 AGGCGGCGGTCCTTGTAA 61.316 61.111 9.78 0.00 0.00 2.41
290 291 1.372004 CGGTCCTTGTAACGCGTGA 60.372 57.895 14.98 0.07 0.00 4.35
324 325 3.089874 CCTGATGAGGCCCCGGAA 61.090 66.667 0.73 0.00 30.52 4.30
360 361 2.859165 TTGTAGGCCTTCCACTTGAG 57.141 50.000 12.58 0.00 33.74 3.02
551 552 3.679389 GTCTTGAATCCTCTTGGCTTGA 58.321 45.455 0.00 0.00 0.00 3.02
553 554 3.328931 TCTTGAATCCTCTTGGCTTGACT 59.671 43.478 0.00 0.00 0.00 3.41
562 563 3.797546 GGCTTGACTCTGCTGCGC 61.798 66.667 0.00 0.00 0.00 6.09
660 663 3.685459 GAGCGCTATCGATCGACAT 57.315 52.632 22.06 8.35 41.41 3.06
661 664 1.254882 GAGCGCTATCGATCGACATG 58.745 55.000 22.06 14.08 41.41 3.21
743 746 1.576527 CGACAAAACAAACGCGCGAG 61.577 55.000 39.36 26.36 0.00 5.03
765 768 3.489180 CCGTCGAGGCTACCATATAAG 57.511 52.381 0.00 0.00 0.00 1.73
766 769 2.818432 CCGTCGAGGCTACCATATAAGT 59.182 50.000 0.00 0.00 0.00 2.24
767 770 4.005650 CCGTCGAGGCTACCATATAAGTA 58.994 47.826 0.00 0.00 0.00 2.24
768 771 4.639310 CCGTCGAGGCTACCATATAAGTAT 59.361 45.833 0.00 0.00 0.00 2.12
769 772 5.819379 CCGTCGAGGCTACCATATAAGTATA 59.181 44.000 0.00 0.00 0.00 1.47
770 773 6.485984 CCGTCGAGGCTACCATATAAGTATAT 59.514 42.308 0.00 0.00 0.00 0.86
771 774 7.658982 CCGTCGAGGCTACCATATAAGTATATA 59.341 40.741 0.00 0.00 0.00 0.86
772 775 9.217278 CGTCGAGGCTACCATATAAGTATATAT 57.783 37.037 0.00 0.00 35.51 0.86
920 926 0.178955 TACCTGGACTCGAACACCCA 60.179 55.000 0.00 0.00 0.00 4.51
982 1011 5.163972 CGACGGCGCCTATATATATCTACTC 60.164 48.000 26.68 0.00 0.00 2.59
988 1017 4.639959 CCTATATATATCTACTCGCGCGC 58.360 47.826 27.95 23.91 0.00 6.86
1023 1052 4.938226 ACCGATCAAGAAGAAAAGATGGAC 59.062 41.667 0.00 0.00 0.00 4.02
1024 1053 4.033358 CCGATCAAGAAGAAAAGATGGACG 59.967 45.833 0.00 0.00 0.00 4.79
1025 1054 4.627467 CGATCAAGAAGAAAAGATGGACGT 59.373 41.667 0.00 0.00 0.00 4.34
1026 1055 5.220303 CGATCAAGAAGAAAAGATGGACGTC 60.220 44.000 7.13 7.13 0.00 4.34
1027 1056 3.987868 TCAAGAAGAAAAGATGGACGTCG 59.012 43.478 9.92 0.00 0.00 5.12
1028 1057 2.338500 AGAAGAAAAGATGGACGTCGC 58.662 47.619 9.92 3.20 0.00 5.19
1243 1272 1.338200 GCTTTCTCCATGTCGGACAGT 60.338 52.381 16.84 2.41 39.64 3.55
1407 1436 1.821061 CGCTCAGCCTCGGGGATTAT 61.821 60.000 4.80 0.00 33.58 1.28
1581 1610 0.497265 GTCAACAGACGAACGTCACG 59.503 55.000 25.13 18.51 46.76 4.35
1670 1699 2.125912 CCACTGGAAGACGAGGCG 60.126 66.667 0.00 0.00 37.43 5.52
1676 1705 2.095252 GGAAGACGAGGCGTGAAGC 61.095 63.158 0.00 0.00 41.37 3.86
1723 1752 2.358737 GCGTCCTTGTCCACTGGG 60.359 66.667 0.00 0.00 0.00 4.45
1805 1834 3.828921 ACCAAAACCCTGAGAACCTAAC 58.171 45.455 0.00 0.00 0.00 2.34
1806 1835 3.203487 ACCAAAACCCTGAGAACCTAACA 59.797 43.478 0.00 0.00 0.00 2.41
1845 1874 1.990060 GTGCAGCTGGGGAGTAGGA 60.990 63.158 17.12 0.00 0.00 2.94
1862 1891 1.671742 GAGACCGTTGCTTCCTCCA 59.328 57.895 0.00 0.00 0.00 3.86
1981 2025 0.610687 AGAAGAAGAGGTTGAGCCGG 59.389 55.000 0.00 0.00 43.70 6.13
2081 2125 1.942677 CCCATGTTCGTACGGCATAA 58.057 50.000 16.52 0.00 0.00 1.90
2108 2152 3.827898 GCGACGAGGCTACCAGCT 61.828 66.667 0.00 0.00 41.99 4.24
2110 2154 2.202810 GACGAGGCTACCAGCTGC 60.203 66.667 8.66 0.00 41.99 5.25
2111 2155 2.997315 ACGAGGCTACCAGCTGCA 60.997 61.111 8.66 0.00 41.99 4.41
2139 2183 3.792047 CTGCGCACCATGACCGTG 61.792 66.667 5.66 0.00 0.00 4.94
2287 2331 1.648756 GACGCTCGAGATGACGACG 60.649 63.158 18.75 10.74 39.99 5.12
2288 2332 2.021964 GACGCTCGAGATGACGACGA 62.022 60.000 18.75 0.00 38.75 4.20
2289 2333 1.648756 CGCTCGAGATGACGACGAC 60.649 63.158 18.75 0.00 38.21 4.34
2297 2341 1.403972 GATGACGACGACTTCACGGC 61.404 60.000 0.00 0.00 38.00 5.68
2315 2359 2.125106 GGAATCAACCGAGCGGCT 60.125 61.111 0.00 0.00 39.32 5.52
2317 2361 0.461339 GGAATCAACCGAGCGGCTTA 60.461 55.000 9.14 0.00 39.32 3.09
2334 2378 2.481449 GCTTATCGGTGTCGTCAGGAAT 60.481 50.000 0.00 0.00 37.69 3.01
2568 2612 2.162809 GGTTGGTCGTGTTGTTGACTTT 59.837 45.455 0.00 0.00 35.45 2.66
2628 2672 3.623060 CCACGTCAATGGTAAGGAATCTG 59.377 47.826 0.00 0.00 34.77 2.90
2782 2830 9.713713 ATTTGTGTACAAGGTTACTTTGTTTTT 57.286 25.926 17.47 0.00 37.15 1.94
2783 2831 8.745464 TTGTGTACAAGGTTACTTTGTTTTTC 57.255 30.769 17.47 7.58 33.81 2.29
2784 2832 7.022384 TGTGTACAAGGTTACTTTGTTTTTCG 58.978 34.615 17.47 0.00 33.81 3.46
2787 2835 4.860352 ACAAGGTTACTTTGTTTTTCGTGC 59.140 37.500 7.04 0.00 33.81 5.34
2793 2841 2.997303 ACTTTGTTTTTCGTGCCAAACC 59.003 40.909 0.00 0.00 32.76 3.27
2815 2863 9.758651 AAACCTTGACTTATAATTTTGGTCAAC 57.241 29.630 11.25 0.00 40.47 3.18
2818 2866 9.757227 CCTTGACTTATAATTTTGGTCAACAAA 57.243 29.630 11.25 0.00 46.82 2.83
2867 2917 4.637771 AAAGGGATCTTTCCGCCG 57.362 55.556 0.00 0.00 43.63 6.46
2868 2918 1.988015 AAAGGGATCTTTCCGCCGA 59.012 52.632 0.00 0.00 43.63 5.54
2869 2919 0.546598 AAAGGGATCTTTCCGCCGAT 59.453 50.000 0.00 0.00 43.63 4.18
2870 2920 0.546598 AAGGGATCTTTCCGCCGATT 59.453 50.000 0.00 0.00 43.63 3.34
2871 2921 0.546598 AGGGATCTTTCCGCCGATTT 59.453 50.000 0.00 0.00 43.63 2.17
2872 2922 0.945099 GGGATCTTTCCGCCGATTTC 59.055 55.000 0.00 0.00 43.63 2.17
2873 2923 1.663695 GGATCTTTCCGCCGATTTCA 58.336 50.000 0.00 0.00 30.72 2.69
2874 2924 2.222027 GGATCTTTCCGCCGATTTCAT 58.778 47.619 0.00 0.00 30.72 2.57
2875 2925 2.618709 GGATCTTTCCGCCGATTTCATT 59.381 45.455 0.00 0.00 30.72 2.57
2876 2926 3.813166 GGATCTTTCCGCCGATTTCATTA 59.187 43.478 0.00 0.00 30.72 1.90
2877 2927 4.274950 GGATCTTTCCGCCGATTTCATTAA 59.725 41.667 0.00 0.00 30.72 1.40
2878 2928 4.609691 TCTTTCCGCCGATTTCATTAAC 57.390 40.909 0.00 0.00 0.00 2.01
2879 2929 3.062909 TCTTTCCGCCGATTTCATTAACG 59.937 43.478 0.00 0.00 0.00 3.18
2880 2930 2.296831 TCCGCCGATTTCATTAACGA 57.703 45.000 0.00 0.00 0.00 3.85
2881 2931 2.619147 TCCGCCGATTTCATTAACGAA 58.381 42.857 0.00 0.00 0.00 3.85
2882 2932 3.001414 TCCGCCGATTTCATTAACGAAA 58.999 40.909 0.00 0.00 39.13 3.46
2883 2933 3.095738 CCGCCGATTTCATTAACGAAAC 58.904 45.455 0.00 0.00 37.69 2.78
2884 2934 3.095738 CGCCGATTTCATTAACGAAACC 58.904 45.455 0.00 0.00 37.69 3.27
2885 2935 3.425094 CGCCGATTTCATTAACGAAACCA 60.425 43.478 0.00 0.00 37.69 3.67
2886 2936 4.668289 GCCGATTTCATTAACGAAACCAT 58.332 39.130 0.00 0.00 37.69 3.55
2887 2937 4.499040 GCCGATTTCATTAACGAAACCATG 59.501 41.667 0.00 0.00 37.69 3.66
2888 2938 4.499040 CCGATTTCATTAACGAAACCATGC 59.501 41.667 0.00 0.00 37.69 4.06
2889 2939 5.092105 CGATTTCATTAACGAAACCATGCA 58.908 37.500 0.00 0.00 37.69 3.96
2890 2940 5.227805 CGATTTCATTAACGAAACCATGCAG 59.772 40.000 0.00 0.00 37.69 4.41
2891 2941 5.446143 TTTCATTAACGAAACCATGCAGT 57.554 34.783 0.00 0.00 30.00 4.40
2892 2942 5.446143 TTCATTAACGAAACCATGCAGTT 57.554 34.783 0.00 0.00 0.00 3.16
2893 2943 5.446143 TCATTAACGAAACCATGCAGTTT 57.554 34.783 3.90 3.90 42.56 2.66
2894 2944 5.218885 TCATTAACGAAACCATGCAGTTTG 58.781 37.500 8.65 4.72 40.01 2.93
2895 2945 4.902443 TTAACGAAACCATGCAGTTTGA 57.098 36.364 8.65 0.00 40.01 2.69
2896 2946 5.446143 TTAACGAAACCATGCAGTTTGAT 57.554 34.783 8.65 0.82 40.01 2.57
2897 2947 6.561737 TTAACGAAACCATGCAGTTTGATA 57.438 33.333 8.65 0.06 40.01 2.15
2898 2948 5.643379 AACGAAACCATGCAGTTTGATAT 57.357 34.783 8.65 0.00 40.01 1.63
2899 2949 6.751514 AACGAAACCATGCAGTTTGATATA 57.248 33.333 8.65 0.00 40.01 0.86
2900 2950 6.363577 ACGAAACCATGCAGTTTGATATAG 57.636 37.500 8.65 0.00 40.01 1.31
2901 2951 5.207768 CGAAACCATGCAGTTTGATATAGC 58.792 41.667 8.65 0.00 40.01 2.97
2902 2952 5.520376 AAACCATGCAGTTTGATATAGCC 57.480 39.130 3.47 0.00 38.51 3.93
2903 2953 4.169059 ACCATGCAGTTTGATATAGCCA 57.831 40.909 0.00 0.00 0.00 4.75
2904 2954 4.535781 ACCATGCAGTTTGATATAGCCAA 58.464 39.130 0.00 0.00 0.00 4.52
2905 2955 4.955450 ACCATGCAGTTTGATATAGCCAAA 59.045 37.500 0.00 0.00 0.00 3.28
2906 2956 5.421693 ACCATGCAGTTTGATATAGCCAAAA 59.578 36.000 0.00 0.00 35.57 2.44
2907 2957 5.750067 CCATGCAGTTTGATATAGCCAAAAC 59.250 40.000 0.00 1.44 35.57 2.43
2908 2958 5.973899 TGCAGTTTGATATAGCCAAAACA 57.026 34.783 6.68 3.73 35.57 2.83
2909 2959 5.708948 TGCAGTTTGATATAGCCAAAACAC 58.291 37.500 6.68 0.69 35.57 3.32
2910 2960 5.242615 TGCAGTTTGATATAGCCAAAACACA 59.757 36.000 6.68 2.71 35.57 3.72
2911 2961 5.572896 GCAGTTTGATATAGCCAAAACACAC 59.427 40.000 6.68 0.00 35.57 3.82
2912 2962 6.092748 CAGTTTGATATAGCCAAAACACACC 58.907 40.000 6.68 0.00 35.57 4.16
2913 2963 5.772672 AGTTTGATATAGCCAAAACACACCA 59.227 36.000 6.68 0.00 35.57 4.17
2914 2964 6.437162 AGTTTGATATAGCCAAAACACACCAT 59.563 34.615 6.68 0.00 35.57 3.55
2915 2965 5.833406 TGATATAGCCAAAACACACCATG 57.167 39.130 0.00 0.00 0.00 3.66
2916 2966 4.097741 TGATATAGCCAAAACACACCATGC 59.902 41.667 0.00 0.00 0.00 4.06
2917 2967 1.697284 TAGCCAAAACACACCATGCA 58.303 45.000 0.00 0.00 0.00 3.96
2918 2968 0.829333 AGCCAAAACACACCATGCAA 59.171 45.000 0.00 0.00 0.00 4.08
2919 2969 0.936600 GCCAAAACACACCATGCAAC 59.063 50.000 0.00 0.00 0.00 4.17
2920 2970 1.580815 CCAAAACACACCATGCAACC 58.419 50.000 0.00 0.00 0.00 3.77
2921 2971 1.580815 CAAAACACACCATGCAACCC 58.419 50.000 0.00 0.00 0.00 4.11
2922 2972 0.467804 AAAACACACCATGCAACCCC 59.532 50.000 0.00 0.00 0.00 4.95
2923 2973 0.398381 AAACACACCATGCAACCCCT 60.398 50.000 0.00 0.00 0.00 4.79
2924 2974 0.398381 AACACACCATGCAACCCCTT 60.398 50.000 0.00 0.00 0.00 3.95
2925 2975 0.827507 ACACACCATGCAACCCCTTC 60.828 55.000 0.00 0.00 0.00 3.46
2926 2976 0.827089 CACACCATGCAACCCCTTCA 60.827 55.000 0.00 0.00 0.00 3.02
2927 2977 0.105760 ACACCATGCAACCCCTTCAA 60.106 50.000 0.00 0.00 0.00 2.69
2928 2978 0.318120 CACCATGCAACCCCTTCAAC 59.682 55.000 0.00 0.00 0.00 3.18
2929 2979 1.178534 ACCATGCAACCCCTTCAACG 61.179 55.000 0.00 0.00 0.00 4.10
2930 2980 0.893270 CCATGCAACCCCTTCAACGA 60.893 55.000 0.00 0.00 0.00 3.85
2931 2981 0.240945 CATGCAACCCCTTCAACGAC 59.759 55.000 0.00 0.00 0.00 4.34
2932 2982 0.893727 ATGCAACCCCTTCAACGACC 60.894 55.000 0.00 0.00 0.00 4.79
2933 2983 2.265904 GCAACCCCTTCAACGACCC 61.266 63.158 0.00 0.00 0.00 4.46
2934 2984 1.964373 CAACCCCTTCAACGACCCG 60.964 63.158 0.00 0.00 0.00 5.28
2935 2985 3.837570 AACCCCTTCAACGACCCGC 62.838 63.158 0.00 0.00 0.00 6.13
2936 2986 4.016706 CCCCTTCAACGACCCGCT 62.017 66.667 0.00 0.00 0.00 5.52
2937 2987 2.652095 CCCCTTCAACGACCCGCTA 61.652 63.158 0.00 0.00 0.00 4.26
2938 2988 1.294138 CCCTTCAACGACCCGCTAA 59.706 57.895 0.00 0.00 0.00 3.09
2939 2989 0.320946 CCCTTCAACGACCCGCTAAA 60.321 55.000 0.00 0.00 0.00 1.85
2940 2990 0.794473 CCTTCAACGACCCGCTAAAC 59.206 55.000 0.00 0.00 0.00 2.01
2941 2991 1.504359 CTTCAACGACCCGCTAAACA 58.496 50.000 0.00 0.00 0.00 2.83
2942 2992 2.073816 CTTCAACGACCCGCTAAACAT 58.926 47.619 0.00 0.00 0.00 2.71
2943 2993 1.434555 TCAACGACCCGCTAAACATG 58.565 50.000 0.00 0.00 0.00 3.21
2944 2994 0.179200 CAACGACCCGCTAAACATGC 60.179 55.000 0.00 0.00 0.00 4.06
2945 2995 0.604243 AACGACCCGCTAAACATGCA 60.604 50.000 0.00 0.00 0.00 3.96
2946 2996 1.296056 ACGACCCGCTAAACATGCAC 61.296 55.000 0.00 0.00 0.00 4.57
2947 2997 1.800681 GACCCGCTAAACATGCACC 59.199 57.895 0.00 0.00 0.00 5.01
2948 2998 1.654023 GACCCGCTAAACATGCACCC 61.654 60.000 0.00 0.00 0.00 4.61
2949 2999 1.378514 CCCGCTAAACATGCACCCT 60.379 57.895 0.00 0.00 0.00 4.34
2950 3000 0.965363 CCCGCTAAACATGCACCCTT 60.965 55.000 0.00 0.00 0.00 3.95
2951 3001 0.451783 CCGCTAAACATGCACCCTTC 59.548 55.000 0.00 0.00 0.00 3.46
2952 3002 1.164411 CGCTAAACATGCACCCTTCA 58.836 50.000 0.00 0.00 0.00 3.02
2953 3003 1.539388 CGCTAAACATGCACCCTTCAA 59.461 47.619 0.00 0.00 0.00 2.69
2954 3004 2.030363 CGCTAAACATGCACCCTTCAAA 60.030 45.455 0.00 0.00 0.00 2.69
2955 3005 3.578688 GCTAAACATGCACCCTTCAAAG 58.421 45.455 0.00 0.00 0.00 2.77
2956 3006 2.531522 AAACATGCACCCTTCAAAGC 57.468 45.000 0.00 0.00 0.00 3.51
2957 3007 0.314935 AACATGCACCCTTCAAAGCG 59.685 50.000 0.00 0.00 0.00 4.68
2958 3008 1.444895 CATGCACCCTTCAAAGCGC 60.445 57.895 0.00 0.00 0.00 5.92
2959 3009 1.902918 ATGCACCCTTCAAAGCGCA 60.903 52.632 11.47 0.00 0.00 6.09
2960 3010 1.252904 ATGCACCCTTCAAAGCGCAT 61.253 50.000 11.47 0.00 33.15 4.73
2961 3011 0.607762 TGCACCCTTCAAAGCGCATA 60.608 50.000 11.47 0.00 0.00 3.14
2962 3012 0.179163 GCACCCTTCAAAGCGCATAC 60.179 55.000 11.47 0.00 0.00 2.39
2963 3013 0.451783 CACCCTTCAAAGCGCATACC 59.548 55.000 11.47 0.00 0.00 2.73
2964 3014 1.024579 ACCCTTCAAAGCGCATACCG 61.025 55.000 11.47 0.00 40.75 4.02
2973 3023 2.737180 CGCATACCGCCTCCATCT 59.263 61.111 0.00 0.00 37.30 2.90
2974 3024 1.665916 CGCATACCGCCTCCATCTG 60.666 63.158 0.00 0.00 37.30 2.90
2975 3025 1.748403 GCATACCGCCTCCATCTGA 59.252 57.895 0.00 0.00 32.94 3.27
2976 3026 0.601311 GCATACCGCCTCCATCTGAC 60.601 60.000 0.00 0.00 32.94 3.51
2977 3027 0.034059 CATACCGCCTCCATCTGACC 59.966 60.000 0.00 0.00 0.00 4.02
2978 3028 1.122019 ATACCGCCTCCATCTGACCC 61.122 60.000 0.00 0.00 0.00 4.46
2979 3029 2.238319 TACCGCCTCCATCTGACCCT 62.238 60.000 0.00 0.00 0.00 4.34
2980 3030 1.457643 CCGCCTCCATCTGACCCTA 60.458 63.158 0.00 0.00 0.00 3.53
2981 3031 0.833834 CCGCCTCCATCTGACCCTAT 60.834 60.000 0.00 0.00 0.00 2.57
2982 3032 0.319728 CGCCTCCATCTGACCCTATG 59.680 60.000 0.00 0.00 0.00 2.23
2983 3033 0.036022 GCCTCCATCTGACCCTATGC 59.964 60.000 0.00 0.00 0.00 3.14
2984 3034 1.427809 CCTCCATCTGACCCTATGCA 58.572 55.000 0.00 0.00 0.00 3.96
2985 3035 1.071385 CCTCCATCTGACCCTATGCAC 59.929 57.143 0.00 0.00 0.00 4.57
2986 3036 1.071385 CTCCATCTGACCCTATGCACC 59.929 57.143 0.00 0.00 0.00 5.01
2987 3037 0.839277 CCATCTGACCCTATGCACCA 59.161 55.000 0.00 0.00 0.00 4.17
2988 3038 1.422781 CCATCTGACCCTATGCACCAT 59.577 52.381 0.00 0.00 0.00 3.55
2989 3039 2.551721 CCATCTGACCCTATGCACCATC 60.552 54.545 0.00 0.00 0.00 3.51
2990 3040 2.180946 TCTGACCCTATGCACCATCT 57.819 50.000 0.00 0.00 0.00 2.90
2991 3041 2.042464 TCTGACCCTATGCACCATCTC 58.958 52.381 0.00 0.00 0.00 2.75
2992 3042 0.752658 TGACCCTATGCACCATCTCG 59.247 55.000 0.00 0.00 0.00 4.04
2993 3043 1.040646 GACCCTATGCACCATCTCGA 58.959 55.000 0.00 0.00 0.00 4.04
2994 3044 0.753262 ACCCTATGCACCATCTCGAC 59.247 55.000 0.00 0.00 0.00 4.20
2995 3045 0.752658 CCCTATGCACCATCTCGACA 59.247 55.000 0.00 0.00 0.00 4.35
2996 3046 1.539065 CCCTATGCACCATCTCGACAC 60.539 57.143 0.00 0.00 0.00 3.67
2997 3047 1.136891 CCTATGCACCATCTCGACACA 59.863 52.381 0.00 0.00 0.00 3.72
2998 3048 2.467838 CTATGCACCATCTCGACACAG 58.532 52.381 0.00 0.00 0.00 3.66
2999 3049 0.610174 ATGCACCATCTCGACACAGT 59.390 50.000 0.00 0.00 0.00 3.55
3000 3050 0.319813 TGCACCATCTCGACACAGTG 60.320 55.000 0.00 0.00 0.00 3.66
3001 3051 1.630244 GCACCATCTCGACACAGTGC 61.630 60.000 0.00 9.34 43.14 4.40
3002 3052 0.319813 CACCATCTCGACACAGTGCA 60.320 55.000 0.00 0.00 0.00 4.57
3003 3053 0.610174 ACCATCTCGACACAGTGCAT 59.390 50.000 0.00 0.00 0.00 3.96
3004 3054 1.824852 ACCATCTCGACACAGTGCATA 59.175 47.619 0.00 0.00 0.00 3.14
3005 3055 2.159184 ACCATCTCGACACAGTGCATAG 60.159 50.000 0.00 0.00 0.00 2.23
3006 3056 2.467838 CATCTCGACACAGTGCATAGG 58.532 52.381 0.00 0.00 0.00 2.57
3007 3057 0.173481 TCTCGACACAGTGCATAGGC 59.827 55.000 0.00 0.00 41.68 3.93
3023 3073 6.251655 GCATAGGCAAGGAGAAAGAATATG 57.748 41.667 0.00 0.00 40.72 1.78
3024 3074 6.000219 GCATAGGCAAGGAGAAAGAATATGA 59.000 40.000 0.00 0.00 40.72 2.15
3025 3075 6.149142 GCATAGGCAAGGAGAAAGAATATGAG 59.851 42.308 0.00 0.00 40.72 2.90
3026 3076 5.707066 AGGCAAGGAGAAAGAATATGAGT 57.293 39.130 0.00 0.00 0.00 3.41
3027 3077 6.072199 AGGCAAGGAGAAAGAATATGAGTT 57.928 37.500 0.00 0.00 0.00 3.01
3028 3078 7.200434 AGGCAAGGAGAAAGAATATGAGTTA 57.800 36.000 0.00 0.00 0.00 2.24
3029 3079 7.810260 AGGCAAGGAGAAAGAATATGAGTTAT 58.190 34.615 0.00 0.00 0.00 1.89
3030 3080 8.938883 AGGCAAGGAGAAAGAATATGAGTTATA 58.061 33.333 0.00 0.00 0.00 0.98
3078 3128 6.417635 TCATCGAAAAGTTCTTTGAAATGTGC 59.582 34.615 0.00 0.00 0.00 4.57
3079 3129 5.645624 TCGAAAAGTTCTTTGAAATGTGCA 58.354 33.333 0.00 0.00 0.00 4.57
3082 3132 6.346040 CGAAAAGTTCTTTGAAATGTGCATCC 60.346 38.462 0.00 0.00 0.00 3.51
3090 3140 5.408880 TTGAAATGTGCATCCAATGACAT 57.591 34.783 0.00 0.00 34.67 3.06
3092 3142 5.893687 TGAAATGTGCATCCAATGACATAC 58.106 37.500 0.00 0.00 33.66 2.39
3095 3145 4.968812 TGTGCATCCAATGACATACTTG 57.031 40.909 0.00 0.00 0.00 3.16
3104 3154 4.082081 CCAATGACATACTTGTTGTGGCAT 60.082 41.667 0.00 2.65 46.74 4.40
3105 3155 5.125257 CCAATGACATACTTGTTGTGGCATA 59.875 40.000 7.33 0.00 44.08 3.14
3106 3156 6.260377 CAATGACATACTTGTTGTGGCATAG 58.740 40.000 7.33 0.00 44.08 2.23
3177 3227 6.770785 TCCAAATATGAAGTGGCCTTGTATAC 59.229 38.462 3.32 0.00 32.10 1.47
3181 3231 9.860650 AAATATGAAGTGGCCTTGTATACATAA 57.139 29.630 6.36 0.00 0.00 1.90
3183 3233 6.995511 TGAAGTGGCCTTGTATACATAAAC 57.004 37.500 6.36 2.01 0.00 2.01
3238 3294 9.801873 TTTAAGAACTGCTTTAATTCCATATGC 57.198 29.630 0.00 0.00 38.05 3.14
3266 3324 5.415065 TCAGGTATTACCCCATGAGATCAT 58.585 41.667 9.31 0.00 39.75 2.45
3276 3334 3.021695 CCATGAGATCATTGTTGCCAGT 58.978 45.455 0.00 0.00 33.61 4.00
3292 3350 2.935676 GCCAGTAAGGAACACTACAGCC 60.936 54.545 0.00 0.00 41.22 4.85
3312 3370 0.178953 AACTGCAGGCTGAAATGGGT 60.179 50.000 20.86 0.00 0.00 4.51
3319 3377 0.967380 GGCTGAAATGGGTGACTGGG 60.967 60.000 0.00 0.00 0.00 4.45
3341 3399 1.202428 GGAGGAGGACAGCGTTGATAC 60.202 57.143 6.16 0.00 0.00 2.24
3345 3403 2.531206 GAGGACAGCGTTGATACTCAC 58.469 52.381 6.16 0.00 0.00 3.51
3354 3412 3.309954 GCGTTGATACTCACCAAGAATCC 59.690 47.826 0.00 0.00 0.00 3.01
3365 3423 0.379669 CAAGAATCCGGTGATGCTGC 59.620 55.000 0.00 0.00 35.67 5.25
3374 3432 1.755179 GGTGATGCTGCTGTGGTATT 58.245 50.000 0.00 0.00 0.00 1.89
3389 3447 7.549134 TGCTGTGGTATTTATCTAGAAACACTG 59.451 37.037 10.17 10.33 0.00 3.66
3441 3499 8.062448 GCATCACAAAACCGTATCTTACTAATC 58.938 37.037 0.00 0.00 0.00 1.75
3450 3508 5.405571 CCGTATCTTACTAATCATGTGGCAC 59.594 44.000 11.55 11.55 0.00 5.01
3520 3581 2.056906 ATATCCAAGGCGCCAGGGTC 62.057 60.000 31.54 0.00 0.00 4.46
3556 3617 6.053650 CAGTTCTGCTAATGAATCAGATGGA 58.946 40.000 0.00 0.00 36.81 3.41
3652 3716 4.744570 CTCGAGCCAAGTTGTATCTTGTA 58.255 43.478 0.00 0.00 42.01 2.41
3754 3818 1.136500 GGTGGTAGTCACGAAGATCCC 59.864 57.143 0.00 0.00 46.96 3.85
3756 3820 2.232941 GTGGTAGTCACGAAGATCCCAA 59.767 50.000 0.00 0.00 36.56 4.12
3757 3821 3.104512 TGGTAGTCACGAAGATCCCAAT 58.895 45.455 0.00 0.00 0.00 3.16
3762 3826 3.005897 AGTCACGAAGATCCCAATATCGG 59.994 47.826 0.00 0.00 37.81 4.18
3763 3827 2.069273 CACGAAGATCCCAATATCGGC 58.931 52.381 0.00 0.00 37.81 5.54
3766 3830 1.002087 GAAGATCCCAATATCGGCGGT 59.998 52.381 7.21 0.65 0.00 5.68
3771 3835 2.633657 CAATATCGGCGGTGCTGC 59.366 61.111 7.21 0.00 34.49 5.25
3792 3856 1.006102 CGGAGGTCGTGTTTGCTCT 60.006 57.895 0.00 0.00 0.00 4.09
3793 3857 1.284982 CGGAGGTCGTGTTTGCTCTG 61.285 60.000 0.00 0.00 0.00 3.35
3820 3884 1.134699 AGAAGCGATGAGAATGGCGAA 60.135 47.619 0.00 0.00 0.00 4.70
3821 3885 1.665679 GAAGCGATGAGAATGGCGAAA 59.334 47.619 0.00 0.00 0.00 3.46
3843 3907 0.872021 GATGTCGAGGATGCGGTGAC 60.872 60.000 0.00 0.82 0.00 3.67
3855 3919 3.677527 GGTGACGTCGGGAGAAGA 58.322 61.111 11.62 0.00 42.89 2.87
3868 3932 0.667792 GAGAAGACGCCACTGGTGAC 60.668 60.000 15.85 9.27 36.58 3.67
3871 3935 2.694829 AAGACGCCACTGGTGACGAC 62.695 60.000 15.85 9.66 38.76 4.34
3875 3939 2.428569 CCACTGGTGACGACGACG 60.429 66.667 5.58 5.58 45.75 5.12
3883 3947 0.179324 GTGACGACGACGCGTTAAAC 60.179 55.000 15.53 0.00 45.72 2.01
3892 3956 2.660900 CGACGCGTTAAACTTCCCAAAG 60.661 50.000 15.53 0.00 38.54 2.77
3916 3980 2.574018 CGTGGTGCAGAGTCCTCCA 61.574 63.158 0.00 0.00 0.00 3.86
3936 4000 3.497763 CCAGACCACCATTACCTTGACAA 60.498 47.826 0.00 0.00 0.00 3.18
3955 4019 1.295101 CATGGACCAGGTACGTGCA 59.705 57.895 11.42 3.13 35.94 4.57
3966 4030 1.578583 GTACGTGCACCAAGACAAGT 58.421 50.000 12.15 3.01 33.13 3.16
3969 4033 0.592247 CGTGCACCAAGACAAGTTGC 60.592 55.000 12.15 0.00 0.00 4.17
3972 4036 1.312815 GCACCAAGACAAGTTGCTCT 58.687 50.000 1.81 2.61 0.00 4.09
3976 4040 4.747810 CACCAAGACAAGTTGCTCTTTTT 58.252 39.130 14.29 5.71 33.63 1.94
3979 4043 4.142182 CCAAGACAAGTTGCTCTTTTTCCA 60.142 41.667 14.29 0.00 33.63 3.53
3982 4046 3.365472 ACAAGTTGCTCTTTTTCCACCT 58.635 40.909 1.81 0.00 33.63 4.00
3993 4311 6.239036 GCTCTTTTTCCACCTTACTTTCACAT 60.239 38.462 0.00 0.00 0.00 3.21
4026 4345 8.700051 TCATTTTCCAATGGTAGTTTTCTTCAA 58.300 29.630 0.00 0.00 40.41 2.69
4065 4639 6.220726 AGAAACAAACATTAACCAGTGCTT 57.779 33.333 0.00 0.00 0.00 3.91
4075 4649 6.091986 ACATTAACCAGTGCTTTTTGTTGTTG 59.908 34.615 0.00 0.00 0.00 3.33
4085 4659 6.250315 GTGCTTTTTGTTGTTGGCAAATAAAC 59.750 34.615 0.00 8.05 35.99 2.01
4111 4685 1.593296 GCAGCAGCAAGGGAGGAAAG 61.593 60.000 0.00 0.00 41.58 2.62
4120 4694 0.912006 AGGGAGGAAAGAGCTGGGTC 60.912 60.000 0.00 0.00 0.00 4.46
4182 4756 0.695347 CCAGGTTGGCCTCTCTCTTT 59.305 55.000 3.32 0.00 44.97 2.52
4185 4759 3.339141 CAGGTTGGCCTCTCTCTTTTAC 58.661 50.000 3.32 0.00 44.97 2.01
4186 4760 3.008485 CAGGTTGGCCTCTCTCTTTTACT 59.992 47.826 3.32 0.00 44.97 2.24
4197 4771 8.041919 GCCTCTCTCTTTTACTACCTATTGTTT 58.958 37.037 0.00 0.00 0.00 2.83
4220 4794 6.058827 TCATGTAATTAACGTCCATGCATG 57.941 37.500 20.19 20.19 34.36 4.06
4221 4795 4.285807 TGTAATTAACGTCCATGCATGC 57.714 40.909 21.69 11.82 0.00 4.06
4222 4796 3.691609 TGTAATTAACGTCCATGCATGCA 59.308 39.130 25.04 25.04 0.00 3.96
4223 4797 4.337836 TGTAATTAACGTCCATGCATGCAT 59.662 37.500 27.46 27.46 37.08 3.96
4272 4846 0.963856 ACTGGCATCGACGACCTACA 60.964 55.000 0.00 0.00 0.00 2.74
4273 4847 0.385751 CTGGCATCGACGACCTACAT 59.614 55.000 0.00 0.00 0.00 2.29
4274 4848 0.384309 TGGCATCGACGACCTACATC 59.616 55.000 0.00 0.00 0.00 3.06
4287 4861 5.164233 CGACCTACATCGATCTTATGCATT 58.836 41.667 3.54 0.00 45.13 3.56
4308 4882 6.447162 CATTCTTGCAGATACCATCTACGTA 58.553 40.000 0.00 0.00 37.58 3.57
4314 4888 0.877071 ATACCATCTACGTACGGGCG 59.123 55.000 21.06 7.28 37.94 6.13
4476 5050 1.000896 CCTCCGCCTGAACCCAAAT 60.001 57.895 0.00 0.00 0.00 2.32
4597 5171 4.382541 TCTCCCTCCAGGCGCTCA 62.383 66.667 7.64 0.00 34.51 4.26
4656 5230 3.493830 GACACTGGTCGACACGCCA 62.494 63.158 18.91 4.99 33.68 5.69
4698 5272 1.576356 CCTACAGCGAGAATGCCTTC 58.424 55.000 0.00 0.00 34.65 3.46
5031 5606 3.262420 AGAATACTCCATGTGTTGTCGC 58.738 45.455 0.00 0.00 30.01 5.19
5032 5607 3.055819 AGAATACTCCATGTGTTGTCGCT 60.056 43.478 0.00 0.00 30.01 4.93
5033 5608 2.078849 TACTCCATGTGTTGTCGCTG 57.921 50.000 0.00 0.00 0.00 5.18
5034 5609 0.392706 ACTCCATGTGTTGTCGCTGA 59.607 50.000 0.00 0.00 0.00 4.26
5035 5610 1.073964 CTCCATGTGTTGTCGCTGAG 58.926 55.000 0.00 0.00 0.00 3.35
5036 5611 0.678950 TCCATGTGTTGTCGCTGAGA 59.321 50.000 0.00 0.00 0.00 3.27
5037 5612 1.069978 TCCATGTGTTGTCGCTGAGAA 59.930 47.619 0.00 0.00 0.00 2.87
5038 5613 2.079158 CCATGTGTTGTCGCTGAGAAT 58.921 47.619 0.00 0.00 0.00 2.40
5039 5614 2.485426 CCATGTGTTGTCGCTGAGAATT 59.515 45.455 0.00 0.00 0.00 2.17
5040 5615 3.058016 CCATGTGTTGTCGCTGAGAATTT 60.058 43.478 0.00 0.00 0.00 1.82
5041 5616 3.878086 TGTGTTGTCGCTGAGAATTTC 57.122 42.857 0.00 0.00 0.00 2.17
5042 5617 3.466836 TGTGTTGTCGCTGAGAATTTCT 58.533 40.909 0.00 0.00 0.00 2.52
5043 5618 3.876914 TGTGTTGTCGCTGAGAATTTCTT 59.123 39.130 0.00 0.00 0.00 2.52
5044 5619 4.214437 GTGTTGTCGCTGAGAATTTCTTG 58.786 43.478 0.00 0.00 0.00 3.02
5045 5620 3.876914 TGTTGTCGCTGAGAATTTCTTGT 59.123 39.130 0.00 0.00 0.00 3.16
5074 5660 2.265367 TGAGTAAGGGCATCTCCAACA 58.735 47.619 0.00 0.00 36.21 3.33
5083 5669 1.911766 ATCTCCAACACCGACCCGT 60.912 57.895 0.00 0.00 0.00 5.28
5090 5676 3.072944 CCAACACCGACCCGTAAATTTA 58.927 45.455 0.00 0.00 0.00 1.40
5093 5679 3.588955 ACACCGACCCGTAAATTTACTC 58.411 45.455 22.57 14.06 0.00 2.59
5104 5690 5.006746 CCGTAAATTTACTCCAGCATCTGTC 59.993 44.000 22.57 0.00 0.00 3.51
5107 5693 7.201644 CGTAAATTTACTCCAGCATCTGTCAAT 60.202 37.037 22.57 0.00 0.00 2.57
5226 5813 3.181483 GGAACAGCATATCAAGCCCAAAG 60.181 47.826 0.00 0.00 0.00 2.77
5367 5960 1.130054 AGCAGCACCTCCAAGAAGGA 61.130 55.000 0.00 0.00 46.75 3.36
5439 6033 4.097361 GCGGAAGGGAGTGGGGAC 62.097 72.222 0.00 0.00 0.00 4.46
5449 6043 1.152183 AGTGGGGACGGGTAACACT 60.152 57.895 0.00 0.00 37.55 3.55
5589 6184 2.040544 CAACTTGCCACCCGCTAGG 61.041 63.158 0.00 0.00 43.72 3.02
5735 6331 3.716195 CCTCCCCACCATCGTGCA 61.716 66.667 0.00 0.00 38.79 4.57
5771 6367 2.464459 GCACCATCACAGTAGCCGC 61.464 63.158 0.00 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
283 284 4.969196 CACCAGGCAGTCACGCGT 62.969 66.667 5.58 5.58 0.00 6.01
290 291 2.606587 GGACCATCCACCAGGCAGT 61.607 63.158 0.00 0.00 36.28 4.40
324 325 1.529244 AAAGAGCAGCGGCAAACCT 60.529 52.632 12.44 0.00 44.61 3.50
562 563 4.081642 TCAAATTGTAGAGAAGGAGGACGG 60.082 45.833 0.00 0.00 0.00 4.79
610 611 0.752009 TCGGCTTCTACTCGCCATCT 60.752 55.000 0.00 0.00 46.62 2.90
612 613 1.542030 CTATCGGCTTCTACTCGCCAT 59.458 52.381 0.00 0.00 46.62 4.40
613 614 0.952280 CTATCGGCTTCTACTCGCCA 59.048 55.000 0.00 0.00 46.62 5.69
630 631 1.425694 TAGCGCTCTCTCTCCCTCTA 58.574 55.000 16.34 0.00 0.00 2.43
964 993 4.639959 GCGCGAGTAGATATATATAGGCG 58.360 47.826 12.10 16.73 42.43 5.52
1007 1036 2.737252 GCGACGTCCATCTTTTCTTCTT 59.263 45.455 10.58 0.00 0.00 2.52
1296 1325 1.733399 GAGGTCGAGCGTTGTGGTC 60.733 63.158 9.28 0.00 41.76 4.02
1337 1366 1.074775 CCCCCGATGACTTCCCCTA 60.075 63.158 0.00 0.00 0.00 3.53
1407 1436 2.425592 CCTTGCCCAGACACGACA 59.574 61.111 0.00 0.00 0.00 4.35
1581 1610 1.222113 GCTCAGCCCAGGGTAGAAC 59.778 63.158 7.55 0.00 0.00 3.01
1590 1619 3.695606 GAGGTGACGCTCAGCCCA 61.696 66.667 11.73 0.00 45.34 5.36
1670 1699 3.998672 TCACCGTCCCCGCTTCAC 61.999 66.667 0.00 0.00 0.00 3.18
1676 1705 4.388499 CCTTGGTCACCGTCCCCG 62.388 72.222 0.00 0.00 0.00 5.73
1845 1874 0.035458 CTTGGAGGAAGCAACGGTCT 59.965 55.000 0.00 0.00 0.00 3.85
1981 2025 4.232248 GGTTAACGATGGCGGCGC 62.232 66.667 26.17 26.17 43.17 6.53
2253 2297 0.102300 CGTCGATGACATACTGCCCA 59.898 55.000 0.00 0.00 32.09 5.36
2287 2331 0.442699 GTTGATTCCGCCGTGAAGTC 59.557 55.000 0.00 0.00 0.00 3.01
2288 2332 0.953960 GGTTGATTCCGCCGTGAAGT 60.954 55.000 0.00 0.00 0.00 3.01
2289 2333 1.794222 GGTTGATTCCGCCGTGAAG 59.206 57.895 0.00 0.00 0.00 3.02
2300 2344 1.583054 GATAAGCCGCTCGGTTGATT 58.417 50.000 10.24 3.40 37.65 2.57
2309 2353 2.104331 CGACACCGATAAGCCGCT 59.896 61.111 0.00 0.00 38.22 5.52
2315 2359 3.021695 AGATTCCTGACGACACCGATAA 58.978 45.455 0.00 0.00 39.50 1.75
2317 2361 1.475403 AGATTCCTGACGACACCGAT 58.525 50.000 0.00 0.00 39.50 4.18
2334 2378 3.558321 CCGTGTGGTCCTTGGAATTTAGA 60.558 47.826 0.00 0.00 0.00 2.10
2568 2612 0.249120 CTTGGATGTGGCCGTCACTA 59.751 55.000 4.47 0.00 46.20 2.74
2760 2807 7.007636 CACGAAAAACAAAGTAACCTTGTACAC 59.992 37.037 0.00 0.00 0.00 2.90
2761 2808 7.022384 CACGAAAAACAAAGTAACCTTGTACA 58.978 34.615 0.00 0.00 0.00 2.90
2762 2809 6.021232 GCACGAAAAACAAAGTAACCTTGTAC 60.021 38.462 0.00 0.00 0.00 2.90
2767 2815 3.444388 TGGCACGAAAAACAAAGTAACCT 59.556 39.130 0.00 0.00 0.00 3.50
2771 2819 4.082136 AGGTTTGGCACGAAAAACAAAGTA 60.082 37.500 0.00 0.00 37.89 2.24
2776 2824 2.231478 TCAAGGTTTGGCACGAAAAACA 59.769 40.909 0.00 0.00 37.89 2.83
2777 2825 2.601314 GTCAAGGTTTGGCACGAAAAAC 59.399 45.455 0.00 0.00 34.79 2.43
2782 2830 2.623878 TAAGTCAAGGTTTGGCACGA 57.376 45.000 0.00 0.00 37.85 4.35
2783 2831 5.560966 ATTATAAGTCAAGGTTTGGCACG 57.439 39.130 0.00 0.00 37.85 5.34
2784 2832 7.117667 CCAAAATTATAAGTCAAGGTTTGGCAC 59.882 37.037 0.00 0.00 37.87 5.01
2787 2835 8.364142 TGACCAAAATTATAAGTCAAGGTTTGG 58.636 33.333 9.65 9.65 45.91 3.28
2850 2900 0.546598 ATCGGCGGAAAGATCCCTTT 59.453 50.000 7.21 0.00 43.37 3.11
2851 2901 0.546598 AATCGGCGGAAAGATCCCTT 59.453 50.000 7.21 0.00 43.37 3.95
2852 2902 0.546598 AAATCGGCGGAAAGATCCCT 59.453 50.000 7.21 0.00 43.37 4.20
2853 2903 0.945099 GAAATCGGCGGAAAGATCCC 59.055 55.000 7.21 0.00 43.37 3.85
2854 2904 1.663695 TGAAATCGGCGGAAAGATCC 58.336 50.000 7.21 0.00 42.80 3.36
2855 2905 3.971032 AATGAAATCGGCGGAAAGATC 57.029 42.857 7.21 0.00 0.00 2.75
2856 2906 4.260620 CGTTAATGAAATCGGCGGAAAGAT 60.261 41.667 7.21 0.00 0.00 2.40
2857 2907 3.062909 CGTTAATGAAATCGGCGGAAAGA 59.937 43.478 7.21 0.00 0.00 2.52
2858 2908 3.062909 TCGTTAATGAAATCGGCGGAAAG 59.937 43.478 7.21 0.00 0.00 2.62
2859 2909 3.001414 TCGTTAATGAAATCGGCGGAAA 58.999 40.909 7.21 0.00 0.00 3.13
2860 2910 2.619147 TCGTTAATGAAATCGGCGGAA 58.381 42.857 7.21 0.00 0.00 4.30
2861 2911 2.296831 TCGTTAATGAAATCGGCGGA 57.703 45.000 7.21 0.00 0.00 5.54
2862 2912 3.095738 GTTTCGTTAATGAAATCGGCGG 58.904 45.455 22.33 0.00 39.80 6.13
2863 2913 3.095738 GGTTTCGTTAATGAAATCGGCG 58.904 45.455 22.33 0.00 39.80 6.46
2864 2914 4.086199 TGGTTTCGTTAATGAAATCGGC 57.914 40.909 22.33 11.57 40.97 5.54
2865 2915 4.499040 GCATGGTTTCGTTAATGAAATCGG 59.501 41.667 22.33 18.44 40.97 4.18
2866 2916 5.092105 TGCATGGTTTCGTTAATGAAATCG 58.908 37.500 22.33 12.96 40.97 3.34
2867 2917 6.092748 ACTGCATGGTTTCGTTAATGAAATC 58.907 36.000 22.33 21.95 39.80 2.17
2868 2918 6.024552 ACTGCATGGTTTCGTTAATGAAAT 57.975 33.333 22.33 7.38 39.80 2.17
2869 2919 5.446143 ACTGCATGGTTTCGTTAATGAAA 57.554 34.783 17.06 17.06 35.58 2.69
2870 2920 5.446143 AACTGCATGGTTTCGTTAATGAA 57.554 34.783 6.00 6.00 0.00 2.57
2871 2921 5.009110 TCAAACTGCATGGTTTCGTTAATGA 59.991 36.000 1.33 0.00 37.32 2.57
2872 2922 5.218885 TCAAACTGCATGGTTTCGTTAATG 58.781 37.500 1.33 0.00 37.32 1.90
2873 2923 5.446143 TCAAACTGCATGGTTTCGTTAAT 57.554 34.783 1.33 0.00 37.32 1.40
2874 2924 4.902443 TCAAACTGCATGGTTTCGTTAA 57.098 36.364 1.33 0.00 37.32 2.01
2875 2925 6.751514 ATATCAAACTGCATGGTTTCGTTA 57.248 33.333 1.33 0.23 37.32 3.18
2876 2926 5.643379 ATATCAAACTGCATGGTTTCGTT 57.357 34.783 1.33 0.00 37.32 3.85
2877 2927 5.220854 GCTATATCAAACTGCATGGTTTCGT 60.221 40.000 1.33 0.00 37.32 3.85
2878 2928 5.207768 GCTATATCAAACTGCATGGTTTCG 58.792 41.667 1.33 0.00 37.32 3.46
2879 2929 5.067674 TGGCTATATCAAACTGCATGGTTTC 59.932 40.000 1.33 0.00 37.32 2.78
2880 2930 4.955450 TGGCTATATCAAACTGCATGGTTT 59.045 37.500 0.00 0.00 39.62 3.27
2881 2931 4.535781 TGGCTATATCAAACTGCATGGTT 58.464 39.130 0.00 0.00 0.00 3.67
2882 2932 4.169059 TGGCTATATCAAACTGCATGGT 57.831 40.909 0.00 0.00 0.00 3.55
2883 2933 5.518848 TTTGGCTATATCAAACTGCATGG 57.481 39.130 0.00 0.00 0.00 3.66
2884 2934 6.254157 GTGTTTTGGCTATATCAAACTGCATG 59.746 38.462 0.00 0.00 34.34 4.06
2885 2935 6.071447 TGTGTTTTGGCTATATCAAACTGCAT 60.071 34.615 0.00 0.00 34.34 3.96
2886 2936 5.242615 TGTGTTTTGGCTATATCAAACTGCA 59.757 36.000 0.00 0.00 34.34 4.41
2887 2937 5.572896 GTGTGTTTTGGCTATATCAAACTGC 59.427 40.000 0.00 0.00 34.34 4.40
2888 2938 6.092748 GGTGTGTTTTGGCTATATCAAACTG 58.907 40.000 0.00 0.00 34.34 3.16
2889 2939 5.772672 TGGTGTGTTTTGGCTATATCAAACT 59.227 36.000 0.00 0.00 34.34 2.66
2890 2940 6.019779 TGGTGTGTTTTGGCTATATCAAAC 57.980 37.500 2.15 0.00 34.34 2.93
2891 2941 6.629128 CATGGTGTGTTTTGGCTATATCAAA 58.371 36.000 0.00 0.00 32.96 2.69
2892 2942 5.394005 GCATGGTGTGTTTTGGCTATATCAA 60.394 40.000 0.00 0.00 0.00 2.57
2893 2943 4.097741 GCATGGTGTGTTTTGGCTATATCA 59.902 41.667 0.00 0.00 0.00 2.15
2894 2944 4.097741 TGCATGGTGTGTTTTGGCTATATC 59.902 41.667 0.00 0.00 0.00 1.63
2895 2945 4.022603 TGCATGGTGTGTTTTGGCTATAT 58.977 39.130 0.00 0.00 0.00 0.86
2896 2946 3.425659 TGCATGGTGTGTTTTGGCTATA 58.574 40.909 0.00 0.00 0.00 1.31
2897 2947 2.246469 TGCATGGTGTGTTTTGGCTAT 58.754 42.857 0.00 0.00 0.00 2.97
2898 2948 1.697284 TGCATGGTGTGTTTTGGCTA 58.303 45.000 0.00 0.00 0.00 3.93
2899 2949 0.829333 TTGCATGGTGTGTTTTGGCT 59.171 45.000 0.00 0.00 0.00 4.75
2900 2950 0.936600 GTTGCATGGTGTGTTTTGGC 59.063 50.000 0.00 0.00 0.00 4.52
2901 2951 1.580815 GGTTGCATGGTGTGTTTTGG 58.419 50.000 0.00 0.00 0.00 3.28
2902 2952 1.580815 GGGTTGCATGGTGTGTTTTG 58.419 50.000 0.00 0.00 0.00 2.44
2903 2953 0.467804 GGGGTTGCATGGTGTGTTTT 59.532 50.000 0.00 0.00 0.00 2.43
2904 2954 0.398381 AGGGGTTGCATGGTGTGTTT 60.398 50.000 0.00 0.00 0.00 2.83
2905 2955 0.398381 AAGGGGTTGCATGGTGTGTT 60.398 50.000 0.00 0.00 0.00 3.32
2906 2956 0.827507 GAAGGGGTTGCATGGTGTGT 60.828 55.000 0.00 0.00 0.00 3.72
2907 2957 0.827089 TGAAGGGGTTGCATGGTGTG 60.827 55.000 0.00 0.00 0.00 3.82
2908 2958 0.105760 TTGAAGGGGTTGCATGGTGT 60.106 50.000 0.00 0.00 0.00 4.16
2909 2959 0.318120 GTTGAAGGGGTTGCATGGTG 59.682 55.000 0.00 0.00 0.00 4.17
2910 2960 1.178534 CGTTGAAGGGGTTGCATGGT 61.179 55.000 0.00 0.00 0.00 3.55
2911 2961 0.893270 TCGTTGAAGGGGTTGCATGG 60.893 55.000 0.00 0.00 0.00 3.66
2912 2962 0.240945 GTCGTTGAAGGGGTTGCATG 59.759 55.000 0.00 0.00 0.00 4.06
2913 2963 0.893727 GGTCGTTGAAGGGGTTGCAT 60.894 55.000 0.00 0.00 0.00 3.96
2914 2964 1.527380 GGTCGTTGAAGGGGTTGCA 60.527 57.895 0.00 0.00 0.00 4.08
2915 2965 2.265904 GGGTCGTTGAAGGGGTTGC 61.266 63.158 0.00 0.00 0.00 4.17
2916 2966 1.964373 CGGGTCGTTGAAGGGGTTG 60.964 63.158 0.00 0.00 0.00 3.77
2917 2967 2.428622 CGGGTCGTTGAAGGGGTT 59.571 61.111 0.00 0.00 0.00 4.11
2918 2968 4.324991 GCGGGTCGTTGAAGGGGT 62.325 66.667 0.00 0.00 0.00 4.95
2919 2969 2.175035 TTAGCGGGTCGTTGAAGGGG 62.175 60.000 0.00 0.00 0.00 4.79
2920 2970 0.320946 TTTAGCGGGTCGTTGAAGGG 60.321 55.000 0.00 0.00 0.00 3.95
2921 2971 0.794473 GTTTAGCGGGTCGTTGAAGG 59.206 55.000 0.00 0.00 0.00 3.46
2922 2972 1.504359 TGTTTAGCGGGTCGTTGAAG 58.496 50.000 0.00 0.00 0.00 3.02
2923 2973 1.801771 CATGTTTAGCGGGTCGTTGAA 59.198 47.619 0.00 0.00 0.00 2.69
2924 2974 1.434555 CATGTTTAGCGGGTCGTTGA 58.565 50.000 0.00 0.00 0.00 3.18
2925 2975 0.179200 GCATGTTTAGCGGGTCGTTG 60.179 55.000 0.00 0.00 0.00 4.10
2926 2976 0.604243 TGCATGTTTAGCGGGTCGTT 60.604 50.000 0.00 0.00 33.85 3.85
2927 2977 1.004320 TGCATGTTTAGCGGGTCGT 60.004 52.632 0.00 0.00 33.85 4.34
2928 2978 1.423845 GTGCATGTTTAGCGGGTCG 59.576 57.895 0.00 0.00 33.85 4.79
2929 2979 1.654023 GGGTGCATGTTTAGCGGGTC 61.654 60.000 0.00 0.00 33.85 4.46
2930 2980 1.677633 GGGTGCATGTTTAGCGGGT 60.678 57.895 0.00 0.00 33.85 5.28
2931 2981 0.965363 AAGGGTGCATGTTTAGCGGG 60.965 55.000 0.00 0.00 33.85 6.13
2932 2982 0.451783 GAAGGGTGCATGTTTAGCGG 59.548 55.000 0.00 0.00 33.85 5.52
2933 2983 1.164411 TGAAGGGTGCATGTTTAGCG 58.836 50.000 0.00 0.00 33.85 4.26
2934 2984 3.578688 CTTTGAAGGGTGCATGTTTAGC 58.421 45.455 0.00 0.00 0.00 3.09
2935 2985 3.578688 GCTTTGAAGGGTGCATGTTTAG 58.421 45.455 0.00 0.00 0.00 1.85
2936 2986 2.030363 CGCTTTGAAGGGTGCATGTTTA 60.030 45.455 0.00 0.00 34.59 2.01
2937 2987 1.269726 CGCTTTGAAGGGTGCATGTTT 60.270 47.619 0.00 0.00 34.59 2.83
2938 2988 0.314935 CGCTTTGAAGGGTGCATGTT 59.685 50.000 0.00 0.00 34.59 2.71
2939 2989 1.959085 CGCTTTGAAGGGTGCATGT 59.041 52.632 0.00 0.00 34.59 3.21
2940 2990 1.444895 GCGCTTTGAAGGGTGCATG 60.445 57.895 0.00 0.00 40.70 4.06
2941 2991 1.902918 TGCGCTTTGAAGGGTGCAT 60.903 52.632 9.73 0.00 42.78 3.96
2942 2992 2.518112 TGCGCTTTGAAGGGTGCA 60.518 55.556 9.73 4.80 44.92 4.57
2943 2993 0.179163 GTATGCGCTTTGAAGGGTGC 60.179 55.000 9.73 0.00 40.70 5.01
2944 2994 0.451783 GGTATGCGCTTTGAAGGGTG 59.548 55.000 9.73 0.00 40.70 4.61
2945 2995 1.024579 CGGTATGCGCTTTGAAGGGT 61.025 55.000 9.73 0.00 40.70 4.34
2946 2996 1.721487 CGGTATGCGCTTTGAAGGG 59.279 57.895 9.73 3.66 41.45 3.95
2947 2997 1.062525 GCGGTATGCGCTTTGAAGG 59.937 57.895 9.73 0.00 0.00 3.46
2948 2998 4.670606 GCGGTATGCGCTTTGAAG 57.329 55.556 9.73 0.00 0.00 3.02
2957 3007 0.601311 GTCAGATGGAGGCGGTATGC 60.601 60.000 0.00 0.00 45.38 3.14
2958 3008 0.034059 GGTCAGATGGAGGCGGTATG 59.966 60.000 0.00 0.00 0.00 2.39
2959 3009 1.122019 GGGTCAGATGGAGGCGGTAT 61.122 60.000 0.00 0.00 0.00 2.73
2960 3010 1.760875 GGGTCAGATGGAGGCGGTA 60.761 63.158 0.00 0.00 0.00 4.02
2961 3011 2.238319 TAGGGTCAGATGGAGGCGGT 62.238 60.000 0.00 0.00 0.00 5.68
2962 3012 0.833834 ATAGGGTCAGATGGAGGCGG 60.834 60.000 0.00 0.00 0.00 6.13
2963 3013 0.319728 CATAGGGTCAGATGGAGGCG 59.680 60.000 0.00 0.00 0.00 5.52
2964 3014 0.036022 GCATAGGGTCAGATGGAGGC 59.964 60.000 0.00 0.00 0.00 4.70
2965 3015 1.071385 GTGCATAGGGTCAGATGGAGG 59.929 57.143 0.00 0.00 0.00 4.30
2966 3016 1.071385 GGTGCATAGGGTCAGATGGAG 59.929 57.143 0.00 0.00 0.00 3.86
2967 3017 1.131638 GGTGCATAGGGTCAGATGGA 58.868 55.000 0.00 0.00 0.00 3.41
2968 3018 0.839277 TGGTGCATAGGGTCAGATGG 59.161 55.000 0.00 0.00 0.00 3.51
2969 3019 2.371179 AGATGGTGCATAGGGTCAGATG 59.629 50.000 0.00 0.00 0.00 2.90
2970 3020 2.636893 GAGATGGTGCATAGGGTCAGAT 59.363 50.000 0.00 0.00 0.00 2.90
2971 3021 2.042464 GAGATGGTGCATAGGGTCAGA 58.958 52.381 0.00 0.00 0.00 3.27
2972 3022 1.269988 CGAGATGGTGCATAGGGTCAG 60.270 57.143 0.00 0.00 0.00 3.51
2973 3023 0.752658 CGAGATGGTGCATAGGGTCA 59.247 55.000 0.00 0.00 0.00 4.02
2974 3024 1.040646 TCGAGATGGTGCATAGGGTC 58.959 55.000 0.00 0.00 0.00 4.46
2975 3025 0.753262 GTCGAGATGGTGCATAGGGT 59.247 55.000 0.00 0.00 0.00 4.34
2976 3026 0.752658 TGTCGAGATGGTGCATAGGG 59.247 55.000 0.00 0.00 0.00 3.53
2977 3027 1.136891 TGTGTCGAGATGGTGCATAGG 59.863 52.381 0.00 0.00 0.00 2.57
2978 3028 2.159184 ACTGTGTCGAGATGGTGCATAG 60.159 50.000 0.00 0.00 0.00 2.23
2979 3029 1.824852 ACTGTGTCGAGATGGTGCATA 59.175 47.619 0.00 0.00 0.00 3.14
2980 3030 0.610174 ACTGTGTCGAGATGGTGCAT 59.390 50.000 0.00 0.00 0.00 3.96
2981 3031 0.319813 CACTGTGTCGAGATGGTGCA 60.320 55.000 0.00 0.00 0.00 4.57
2982 3032 1.630244 GCACTGTGTCGAGATGGTGC 61.630 60.000 20.34 20.34 42.04 5.01
2983 3033 0.319813 TGCACTGTGTCGAGATGGTG 60.320 55.000 9.86 11.54 0.00 4.17
2984 3034 0.610174 ATGCACTGTGTCGAGATGGT 59.390 50.000 9.86 0.00 0.00 3.55
2985 3035 2.467838 CTATGCACTGTGTCGAGATGG 58.532 52.381 9.86 0.00 0.00 3.51
2986 3036 2.467838 CCTATGCACTGTGTCGAGATG 58.532 52.381 9.86 0.00 0.00 2.90
2987 3037 1.202463 GCCTATGCACTGTGTCGAGAT 60.202 52.381 9.86 0.00 37.47 2.75
2988 3038 0.173481 GCCTATGCACTGTGTCGAGA 59.827 55.000 9.86 0.00 37.47 4.04
2989 3039 0.108662 TGCCTATGCACTGTGTCGAG 60.109 55.000 9.86 4.12 44.23 4.04
2990 3040 1.971418 TGCCTATGCACTGTGTCGA 59.029 52.632 9.86 0.00 44.23 4.20
2991 3041 4.596311 TGCCTATGCACTGTGTCG 57.404 55.556 9.86 0.00 44.23 4.35
3000 3050 6.000219 TCATATTCTTTCTCCTTGCCTATGC 59.000 40.000 0.00 0.00 38.26 3.14
3001 3051 7.222872 ACTCATATTCTTTCTCCTTGCCTATG 58.777 38.462 0.00 0.00 0.00 2.23
3002 3052 7.385894 ACTCATATTCTTTCTCCTTGCCTAT 57.614 36.000 0.00 0.00 0.00 2.57
3003 3053 6.814954 ACTCATATTCTTTCTCCTTGCCTA 57.185 37.500 0.00 0.00 0.00 3.93
3004 3054 5.707066 ACTCATATTCTTTCTCCTTGCCT 57.293 39.130 0.00 0.00 0.00 4.75
3005 3055 9.732130 ATATAACTCATATTCTTTCTCCTTGCC 57.268 33.333 0.00 0.00 0.00 4.52
3051 3101 9.611284 CACATTTCAAAGAACTTTTCGATGATA 57.389 29.630 14.50 2.05 32.14 2.15
3052 3102 7.115378 GCACATTTCAAAGAACTTTTCGATGAT 59.885 33.333 14.50 0.00 32.14 2.45
3053 3103 6.417635 GCACATTTCAAAGAACTTTTCGATGA 59.582 34.615 14.50 2.82 34.02 2.92
3054 3104 6.198778 TGCACATTTCAAAGAACTTTTCGATG 59.801 34.615 0.00 5.05 34.02 3.84
3055 3105 6.272318 TGCACATTTCAAAGAACTTTTCGAT 58.728 32.000 0.00 0.00 34.02 3.59
3057 3107 5.947503 TGCACATTTCAAAGAACTTTTCG 57.052 34.783 0.00 0.00 34.02 3.46
3059 3109 6.347696 TGGATGCACATTTCAAAGAACTTTT 58.652 32.000 0.00 0.00 0.00 2.27
3078 3128 5.643664 CCACAACAAGTATGTCATTGGATG 58.356 41.667 0.00 0.00 39.40 3.51
3079 3129 4.158394 GCCACAACAAGTATGTCATTGGAT 59.842 41.667 0.00 0.00 39.40 3.41
3082 3132 4.502171 TGCCACAACAAGTATGTCATTG 57.498 40.909 0.00 0.00 39.40 2.82
3090 3140 9.590451 GTAAGTTATACTATGCCACAACAAGTA 57.410 33.333 0.00 0.00 0.00 2.24
3092 3142 8.718102 AGTAAGTTATACTATGCCACAACAAG 57.282 34.615 0.00 0.00 0.00 3.16
3153 3203 6.545666 TGTATACAAGGCCACTTCATATTTGG 59.454 38.462 5.01 0.00 33.81 3.28
3154 3204 7.566760 TGTATACAAGGCCACTTCATATTTG 57.433 36.000 5.01 0.00 33.81 2.32
3163 3213 6.308015 TCTGTTTATGTATACAAGGCCACT 57.692 37.500 10.14 0.00 0.00 4.00
3217 3273 8.707938 AAAAGCATATGGAATTAAAGCAGTTC 57.292 30.769 4.56 0.00 0.00 3.01
3232 3288 6.549364 TGGGGTAATACCTGAAAAAGCATATG 59.451 38.462 9.58 0.00 38.64 1.78
3237 3293 4.953579 TCATGGGGTAATACCTGAAAAAGC 59.046 41.667 9.58 0.00 38.64 3.51
3238 3294 6.423182 TCTCATGGGGTAATACCTGAAAAAG 58.577 40.000 9.58 1.47 38.64 2.27
3276 3334 3.805807 GCAGTTGGCTGTAGTGTTCCTTA 60.806 47.826 0.00 0.00 44.32 2.69
3292 3350 0.245539 CCCATTTCAGCCTGCAGTTG 59.754 55.000 13.81 10.88 0.00 3.16
3312 3370 1.229209 GTCCTCCTCCACCCAGTCA 60.229 63.158 0.00 0.00 0.00 3.41
3319 3377 1.374758 CAACGCTGTCCTCCTCCAC 60.375 63.158 0.00 0.00 0.00 4.02
3345 3403 1.019673 CAGCATCACCGGATTCTTGG 58.980 55.000 9.46 0.00 0.00 3.61
3354 3412 0.462581 ATACCACAGCAGCATCACCG 60.463 55.000 0.00 0.00 0.00 4.94
3359 3417 6.425210 TCTAGATAAATACCACAGCAGCAT 57.575 37.500 0.00 0.00 0.00 3.79
3365 3423 8.873830 CACAGTGTTTCTAGATAAATACCACAG 58.126 37.037 0.00 0.00 32.62 3.66
3374 3432 8.967918 AGCTATGTACACAGTGTTTCTAGATAA 58.032 33.333 12.53 0.00 0.00 1.75
3441 3499 7.658982 GGATATATAGGATGTATGTGCCACATG 59.341 40.741 20.36 0.00 39.53 3.21
3450 3508 9.993454 CCTGTGATTGGATATATAGGATGTATG 57.007 37.037 0.00 0.00 0.00 2.39
3520 3581 1.006102 AGAACTGCCACCGTCTTCG 60.006 57.895 0.00 0.00 0.00 3.79
3556 3617 1.890876 TTGTTCTTGTAGCGGCATGT 58.109 45.000 1.45 0.00 0.00 3.21
3652 3716 0.876777 TTGACGACGATGTGCGGTTT 60.877 50.000 0.00 0.00 46.49 3.27
3731 3795 0.963962 TCTTCGTGACTACCACCCAC 59.036 55.000 0.00 0.00 42.76 4.61
3747 3811 1.056660 ACCGCCGATATTGGGATCTT 58.943 50.000 11.19 0.00 0.00 2.40
3754 3818 2.633657 GCAGCACCGCCGATATTG 59.366 61.111 0.00 0.00 0.00 1.90
3784 3848 2.287248 GCTTCTTGTCACCAGAGCAAAC 60.287 50.000 0.00 0.00 0.00 2.93
3788 3852 0.319900 TCGCTTCTTGTCACCAGAGC 60.320 55.000 0.00 0.00 0.00 4.09
3792 3856 1.618343 TCTCATCGCTTCTTGTCACCA 59.382 47.619 0.00 0.00 0.00 4.17
3793 3857 2.370281 TCTCATCGCTTCTTGTCACC 57.630 50.000 0.00 0.00 0.00 4.02
3820 3884 0.179100 CCGCATCCTCGACATCACTT 60.179 55.000 0.00 0.00 0.00 3.16
3821 3885 1.323271 ACCGCATCCTCGACATCACT 61.323 55.000 0.00 0.00 0.00 3.41
3868 3932 0.090178 GGAAGTTTAACGCGTCGTCG 59.910 55.000 14.44 0.00 39.99 5.12
3871 3935 0.860533 TTGGGAAGTTTAACGCGTCG 59.139 50.000 14.44 0.00 0.00 5.12
3883 3947 2.021457 ACCACGTCAAACTTTGGGAAG 58.979 47.619 1.62 0.00 38.87 3.46
3892 3956 0.582005 GACTCTGCACCACGTCAAAC 59.418 55.000 0.00 0.00 0.00 2.93
3901 3965 1.594310 GTCTGGAGGACTCTGCACC 59.406 63.158 0.00 0.00 41.46 5.01
3916 3980 3.137544 TGTTGTCAAGGTAATGGTGGTCT 59.862 43.478 0.00 0.00 0.00 3.85
3936 4000 1.295423 GCACGTACCTGGTCCATGT 59.705 57.895 0.63 5.07 0.00 3.21
3955 4019 4.142160 GGAAAAAGAGCAACTTGTCTTGGT 60.142 41.667 7.13 0.00 38.98 3.67
3966 4030 5.654650 TGAAAGTAAGGTGGAAAAAGAGCAA 59.345 36.000 0.00 0.00 0.00 3.91
3969 4033 6.693315 TGTGAAAGTAAGGTGGAAAAAGAG 57.307 37.500 0.00 0.00 0.00 2.85
3972 4036 6.783708 ACATGTGAAAGTAAGGTGGAAAAA 57.216 33.333 0.00 0.00 0.00 1.94
3976 4040 7.721842 TGATAAAACATGTGAAAGTAAGGTGGA 59.278 33.333 0.00 0.00 0.00 4.02
4037 4356 9.040939 GCACTGGTTAATGTTTGTTTCTTATTT 57.959 29.630 0.00 0.00 0.00 1.40
4038 4357 8.421002 AGCACTGGTTAATGTTTGTTTCTTATT 58.579 29.630 0.00 0.00 0.00 1.40
4045 4364 6.652900 ACAAAAAGCACTGGTTAATGTTTGTT 59.347 30.769 12.54 2.68 31.05 2.83
4052 4371 5.584251 CCAACAACAAAAAGCACTGGTTAAT 59.416 36.000 0.00 0.00 0.00 1.40
4056 4375 2.934801 GCCAACAACAAAAAGCACTGGT 60.935 45.455 0.00 0.00 0.00 4.00
4057 4376 1.665169 GCCAACAACAAAAAGCACTGG 59.335 47.619 0.00 0.00 0.00 4.00
4059 4378 2.758736 TGCCAACAACAAAAAGCACT 57.241 40.000 0.00 0.00 0.00 4.40
4060 4379 3.820777 TTTGCCAACAACAAAAAGCAC 57.179 38.095 0.00 0.00 34.87 4.40
4061 4380 6.150140 AGTTTATTTGCCAACAACAAAAAGCA 59.850 30.769 0.00 0.00 40.19 3.91
4065 4639 5.412594 TGCAGTTTATTTGCCAACAACAAAA 59.587 32.000 0.00 0.00 40.19 2.44
4075 4649 0.607620 TGCCCTGCAGTTTATTTGCC 59.392 50.000 13.81 0.00 40.81 4.52
4099 4673 0.034670 CCCAGCTCTTTCCTCCCTTG 60.035 60.000 0.00 0.00 0.00 3.61
4102 4676 1.201429 TGACCCAGCTCTTTCCTCCC 61.201 60.000 0.00 0.00 0.00 4.30
4111 4685 0.670854 GAACCGTCTTGACCCAGCTC 60.671 60.000 0.00 0.00 0.00 4.09
4120 4694 2.802816 CCACTCTTTCTGAACCGTCTTG 59.197 50.000 0.00 0.00 0.00 3.02
4156 4730 4.002797 GGCCAACCTGGTAAGCTG 57.997 61.111 17.45 5.30 40.46 4.24
4197 4771 5.505489 GCATGCATGGACGTTAATTACATGA 60.505 40.000 27.34 3.15 40.92 3.07
4223 4797 9.378504 AGTTCATTATTCATTGGGGCATTTATA 57.621 29.630 0.00 0.00 0.00 0.98
4238 4812 2.754552 TGCCAGTGCCAGTTCATTATTC 59.245 45.455 0.00 0.00 36.33 1.75
4314 4888 1.732308 GTCCATCCGGTCCTCGTAC 59.268 63.158 0.00 0.00 37.11 3.67
4380 4954 0.458716 GGTCGAAGAAGAAGAGCCCG 60.459 60.000 0.00 0.00 39.69 6.13
4597 5171 1.271840 TAAGGCTGGCCGTTGAGGAT 61.272 55.000 5.28 0.00 45.00 3.24
4698 5272 1.065251 GCGGTTCGGAGAGTAAGTAGG 59.935 57.143 0.00 0.00 38.43 3.18
5004 5579 6.634805 ACAACACATGGAGTATTCTCTAGTG 58.365 40.000 13.43 13.43 40.29 2.74
5074 5660 2.566724 TGGAGTAAATTTACGGGTCGGT 59.433 45.455 19.92 3.58 38.65 4.69
5083 5669 7.067372 CCATTGACAGATGCTGGAGTAAATTTA 59.933 37.037 0.00 0.00 35.51 1.40
5090 5676 1.911357 TCCATTGACAGATGCTGGAGT 59.089 47.619 0.00 0.00 35.51 3.85
5093 5679 2.118313 TGTCCATTGACAGATGCTGG 57.882 50.000 0.00 0.00 46.40 4.85
5104 5690 1.377202 CCCCCACTCGTGTCCATTG 60.377 63.158 0.00 0.00 0.00 2.82
5107 5693 2.603473 CTCCCCCACTCGTGTCCA 60.603 66.667 0.00 0.00 0.00 4.02
5226 5813 6.747739 GGCATTTATCTCGTCTTTCTTTTTCC 59.252 38.462 0.00 0.00 0.00 3.13
5439 6033 2.433664 GGGCGTCAGTGTTACCCG 60.434 66.667 0.00 0.00 0.00 5.28
5589 6184 1.082117 CAAGACCGTGGTGGCGTATC 61.082 60.000 0.00 0.00 43.94 2.24
5648 6243 1.894756 CTCGCTCCGTCCTCTAGGG 60.895 68.421 0.00 0.00 35.41 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.